Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064061.t1 | XP_003620935.1 | 98.8 | 245 | 3 | 0 | 1 | 245 | 64 | 308 | 2.10E-136 | 495 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064061.t1 | G7KJU8 | 98.8 | 245 | 3 | 0 | 1 | 245 | 64 | 308 | 1.5e-136 | 495.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene064061 | 0.815987 | 6.97E-52 | -1.69E-46 |
| MS.gene049257 | MS.gene064061 | 0.816582 | 5.13E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene064061 | 0.80563 | 1.22E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064061.t1 | MTR_6g092630 | 98.776 | 245 | 3 | 0 | 1 | 245 | 64 | 308 | 0.0 | 501 |
| MS.gene064061.t1 | MTR_6g092630 | 98.198 | 222 | 4 | 0 | 1 | 222 | 64 | 285 | 1.70e-163 | 454 |
| MS.gene064061.t1 | MTR_7g032900 | 40.000 | 205 | 117 | 2 | 32 | 234 | 53 | 253 | 6.77e-46 | 154 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064061.t1 | AT4G29590 | 84.034 | 238 | 38 | 0 | 5 | 242 | 77 | 314 | 7.30e-152 | 426 |
| MS.gene064061.t1 | AT3G01660 | 44.944 | 178 | 94 | 1 | 49 | 226 | 63 | 236 | 1.97e-49 | 163 |
Find 66 sgRNAs with CRISPR-Local
Find 206 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAGAGCAATTCCCCTTTA+AGG | 0.183158 | 6.1:-79609538 | MS.gene064061:CDS |
| TTGGAAATCCTCCTCCTTAA+AGG | 0.202462 | 6.1:+79609524 | None:intergenic |
| TCTTCAATTCTTCTTCATTC+AGG | 0.212937 | 6.1:+79608428 | None:intergenic |
| TACTCCTGGAGTAAGCATTT+TGG | 0.244912 | 6.1:-79608607 | MS.gene064061:CDS |
| ATCACTAACATGTCTGCTTC+TGG | 0.261998 | 6.1:-79610222 | None:intergenic |
| TTACAAAAGCCATTTCTATA+TGG | 0.289442 | 6.1:-79606893 | MS.gene064061:CDS |
| AACTCGTTCTTGCTTGTATC+CGG | 0.295022 | 6.1:+79608462 | None:intergenic |
| TATCTTCAAATGAGAGTTTA+GGG | 0.299222 | 6.1:+79607965 | None:intergenic |
| GGATCCGAGCGTCCAGGATT+TGG | 0.308011 | 6.1:+79606269 | None:intergenic |
| TTATCTTCAAATGAGAGTTT+AGG | 0.310263 | 6.1:+79607964 | None:intergenic |
| TCCTCCTGCATAATGAAAAT+AGG | 0.331325 | 6.1:+79606830 | None:intergenic |
| ACAAGATTGTCACCTCATTA+TGG | 0.338362 | 6.1:+79607591 | None:intergenic |
| TGGAAATCCTCCTCCTTAAA+GGG | 0.361434 | 6.1:+79609525 | None:intergenic |
| CGCTGGTCCCTCTGTTGATC+AGG | 0.373827 | 6.1:-79610166 | MS.gene064061:intron |
| GCTTGTATCCGGGTGGAAAA+TGG | 0.376192 | 6.1:+79608473 | None:intergenic |
| ATTTCTATATGGACATCAAC+CGG | 0.418619 | 6.1:-79606882 | MS.gene064061:CDS |
| GCTGATCATGTTATGATAGT+TGG | 0.426476 | 6.1:-79606855 | MS.gene064061:CDS |
| CAAGAACGAGTTGTAGGATT+AGG | 0.428759 | 6.1:-79608451 | MS.gene064061:CDS |
| TTAGTCAGAGCAGCAATTGC+AGG | 0.435836 | 6.1:+79608660 | None:intergenic |
| TCCTTAAAGGGGAATTGCTC+TGG | 0.443401 | 6.1:+79609537 | None:intergenic |
| CCTAGAGTACACAATGTACA+TGG | 0.454718 | 6.1:+79606247 | None:intergenic |
| CTCATTATGGCCAATCCACC+TGG | 0.458613 | 6.1:+79607604 | None:intergenic |
| AAATGTCAAGAGGCTTTGTC+AGG | 0.471468 | 6.1:+79607653 | None:intergenic |
| ACTCGTTCTTGCTTGTATCC+GGG | 0.477291 | 6.1:+79608463 | None:intergenic |
| GGTTGATGTCCATATAGAAA+TGG | 0.479380 | 6.1:+79606884 | None:intergenic |
| TTTGGATATGTGTAGCAGTT+GGG | 0.481811 | 6.1:-79608589 | MS.gene064061:intron |
| CCATGTACATTGTGTACTCT+AGG | 0.489987 | 6.1:-79606247 | MS.gene064061:CDS |
| GATACTCAAGCCAGGTGGAT+TGG | 0.490478 | 6.1:-79607614 | MS.gene064061:CDS |
| ATCTCCAAATCCTGGACGCT+CGG | 0.500867 | 6.1:-79606273 | MS.gene064061:CDS |
| GCAATTCCCCTTTAAGGAGG+AGG | 0.507491 | 6.1:-79609532 | MS.gene064061:CDS |
| CTCCAGGAGTATTGCTAGGT+GGG | 0.522868 | 6.1:+79608619 | None:intergenic |
| GTGGATATATCTCCAAATCC+TGG | 0.525108 | 6.1:-79606281 | MS.gene064061:CDS |
| TTTGTAGATATTGAAGAATG+TGG | 0.529167 | 6.1:-79609565 | MS.gene064061:intron |
| AGGAGGATTTGAACCTCCTC+AGG | 0.530086 | 6.1:-79606814 | MS.gene064061:intron |
| TTCCCACCTAGCAATACTCC+TGG | 0.531377 | 6.1:-79608621 | MS.gene064061:CDS |
| CATAACATGATCAGCATCCC+CGG | 0.535071 | 6.1:+79606863 | None:intergenic |
| TACAAGCAAGAACGAGTTGT+AGG | 0.540637 | 6.1:-79608457 | MS.gene064061:CDS |
| GAACTTACTCATCATAACGT+TGG | 0.551670 | 6.1:+79609505 | None:intergenic |
| ATCTCCTTGAAAATGTCAAG+AGG | 0.555753 | 6.1:+79607643 | None:intergenic |
| AGAAGAATTGAAGAGGAACC+CGG | 0.559960 | 6.1:-79608419 | MS.gene064061:intron |
| TTTCTATATGGACATCAACC+GGG | 0.564851 | 6.1:-79606881 | MS.gene064061:CDS |
| CATTGTGTACTCTAGGAAGC+TGG | 0.575042 | 6.1:-79606240 | MS.gene064061:CDS |
| TACATGGGATCCGAGCGTCC+AGG | 0.578450 | 6.1:+79606263 | None:intergenic |
| ATATCCAAAATGCTTACTCC+AGG | 0.588855 | 6.1:+79608603 | None:intergenic |
| GTTGCTTCTGTAGGTCCTCA+CGG | 0.591552 | 6.1:-79608016 | MS.gene064061:intron |
| TAGTCAGAGCAGCAATTGCA+GGG | 0.591972 | 6.1:+79608661 | None:intergenic |
| CTTACTCCAGGAGTATTGCT+AGG | 0.592913 | 6.1:+79608615 | None:intergenic |
| TGAATGAAGAAGAATTGAAG+AGG | 0.598010 | 6.1:-79608426 | MS.gene064061:CDS |
| CAGGTGGATTGGCCATAATG+AGG | 0.601130 | 6.1:-79607603 | MS.gene064061:intron |
| ATGAATAGGATACTCAAGCC+AGG | 0.611206 | 6.1:-79607622 | MS.gene064061:CDS |
| CGTTCTTGCTTGTATCCGGG+TGG | 0.620983 | 6.1:+79608466 | None:intergenic |
| GGAAATCCTCCTCCTTAAAG+GGG | 0.624737 | 6.1:+79609526 | None:intergenic |
| AGACAAACCTGATCAACAGA+GGG | 0.625013 | 6.1:+79610159 | None:intergenic |
| AAGTTCGTATTTCTCTTATG+CGG | 0.628409 | 6.1:+79606214 | None:intergenic |
| TTTCGATGTCATCACTAATG+TGG | 0.633015 | 6.1:-79607938 | MS.gene064061:intron |
| TCGATGTGTGTTACGAATCG+AGG | 0.637675 | 6.1:+79608687 | None:intergenic |
| AGAGCAATTCCCCTTTAAGG+AGG | 0.643048 | 6.1:-79609535 | MS.gene064061:CDS |
| ACTCCAGGAGTATTGCTAGG+TGG | 0.650096 | 6.1:+79608618 | None:intergenic |
| AGTGAGGGAGTTACCTGAGG+AGG | 0.662235 | 6.1:+79606801 | None:intergenic |
| TTCTATATGGACATCAACCG+GGG | 0.671373 | 6.1:-79606880 | MS.gene064061:CDS |
| CTAGAGTACACAATGTACAT+GGG | 0.677895 | 6.1:+79606248 | None:intergenic |
| TAGACAAACCTGATCAACAG+AGG | 0.681494 | 6.1:+79610158 | None:intergenic |
| AGATATTGAAGAATGTGGAA+TGG | 0.686438 | 6.1:-79609560 | MS.gene064061:CDS |
| CTGATCAACAGAGGGACCAG+CGG | 0.689416 | 6.1:+79610167 | None:intergenic |
| AATAGGATACTCAAGCCAGG+TGG | 0.715241 | 6.1:-79607619 | MS.gene064061:CDS |
| CTTGTACAGTATACTCCGTG+AGG | 0.730572 | 6.1:+79608001 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAAACTAACAAAAATTAA+GGG | + | chr6.1:79607677-79607696 | None:intergenic | 10.0% |
| !! | TTAATTAAAAATTAATGACT+TGG | - | chr6.1:79608351-79608370 | MS.gene064061:intron | 10.0% |
| !! | AAAAACTAACAAAAATTAAG+GGG | + | chr6.1:79607676-79607695 | None:intergenic | 15.0% |
| !! | GTAAAAACTAACAAAAATTA+AGG | + | chr6.1:79607678-79607697 | None:intergenic | 15.0% |
| !!! | AAGAAAATTCTGTTTTATAT+AGG | + | chr6.1:79610027-79610046 | None:intergenic | 15.0% |
| !!! | AGAAAATTCTGTTTTATATA+GGG | + | chr6.1:79610026-79610045 | None:intergenic | 15.0% |
| !!! | ATAATTTTTGTTAGATTGTT+TGG | + | chr6.1:79607564-79607583 | None:intergenic | 15.0% |
| !!! | GATTTTTACATACAAATTTA+TGG | - | chr6.1:79606641-79606660 | MS.gene064061:intron | 15.0% |
| !!! | TTTATTATCTTTTGATTTTC+TGG | - | chr6.1:79607272-79607291 | MS.gene064061:intron | 15.0% |
| !!! | TTTTCATCTTAAATTACTAT+CGG | + | chr6.1:79606387-79606406 | None:intergenic | 15.0% |
| !! | AAAACTAACAAAAATTAAGG+GGG | + | chr6.1:79607675-79607694 | None:intergenic | 20.0% |
| !! | AAACATTAGTCATTACAAAA+AGG | + | chr6.1:79609918-79609937 | None:intergenic | 20.0% |
| !! | AAATGAAATGATGAATTTCT+TGG | - | chr6.1:79608668-79608687 | MS.gene064061:CDS | 20.0% |
| !! | AACATTAGTCATTACAAAAA+GGG | + | chr6.1:79609917-79609936 | None:intergenic | 20.0% |
| !! | AGACTTCTATTCTTATTATT+CGG | - | chr6.1:79609886-79609905 | MS.gene064061:intron | 20.0% |
| !! | ATAAAGGTAGAATTGAAAAT+TGG | - | chr6.1:79606799-79606818 | MS.gene064061:intron | 20.0% |
| !! | ATTCTTCAATATCTACAAAA+AGG | + | chr6.1:79606876-79606895 | None:intergenic | 20.0% |
| !! | GATGTTATTGTATCTATTAT+TGG | - | chr6.1:79609451-79609470 | MS.gene064061:intron | 20.0% |
| !! | TAACATCAAAAACAGATAAA+TGG | + | chr6.1:79609438-79609457 | None:intergenic | 20.0% |
| !! | TAAGATTACAATTTCAATTG+TGG | - | chr6.1:79609192-79609211 | MS.gene064061:intron | 20.0% |
| !! | TTTAAAAATGTTAAGTTCAC+TGG | + | chr6.1:79609146-79609165 | None:intergenic | 20.0% |
| !!! | ATATATTTTAACTTCGGTAT+TGG | - | chr6.1:79608542-79608561 | MS.gene064061:intron | 20.0% |
| !!! | ATTTGTTCATAAGTTGTTTT+CGG | + | chr6.1:79607529-79607548 | None:intergenic | 20.0% |
| !!! | ATTTTTAATGTCTAGAAACA+TGG | - | chr6.1:79608386-79608405 | MS.gene064061:intron | 20.0% |
| !!! | CTCTTCATATATTTTAACTT+CGG | - | chr6.1:79608536-79608555 | MS.gene064061:intron | 20.0% |
| !!! | GAAAATTCTGTTTTATATAG+GGG | + | chr6.1:79610025-79610044 | None:intergenic | 20.0% |
| !!! | GATTAGTTATTAACATATTG+AGG | - | chr6.1:79609945-79609964 | MS.gene064061:intron | 20.0% |
| !!! | TTTATTTTAAACCATACCAT+TGG | + | chr6.1:79609971-79609990 | None:intergenic | 20.0% |
| ! | AAAATTAAGGTTCAAAATGG+TGG | + | chr6.1:79607316-79607335 | None:intergenic | 25.0% |
| ! | AACTATACTTTGGTTATGTT+TGG | - | chr6.1:79607384-79607403 | MS.gene064061:intron | 25.0% |
| ! | AAGAAGTAAAATATGCACAA+AGG | + | chr6.1:79609749-79609768 | None:intergenic | 25.0% |
| ! | AAGTAATTCCAAAATGATAG+CGG | + | chr6.1:79608877-79608896 | None:intergenic | 25.0% |
| ! | AGAAGTAAAATATGCACAAA+GGG | + | chr6.1:79609748-79609767 | None:intergenic | 25.0% |
| ! | ATAAATCTTCACTTTGCATT+AGG | - | chr6.1:79607942-79607961 | MS.gene064061:CDS | 25.0% |
| ! | ATAATTTCAACAGTGTTTCT+CGG | - | chr6.1:79609257-79609276 | MS.gene064061:intron | 25.0% |
| ! | CAATCTAGAAAAGTAATCTT+AGG | + | chr6.1:79608273-79608292 | None:intergenic | 25.0% |
| ! | CAGAAAATTAAGGTTCAAAA+TGG | + | chr6.1:79607319-79607338 | None:intergenic | 25.0% |
| ! | CTAACAAAACAACTATACTT+TGG | - | chr6.1:79607374-79607393 | MS.gene064061:intron | 25.0% |
| ! | GACTTATTTCAACTTATCTA+TGG | + | chr6.1:79607588-79607607 | None:intergenic | 25.0% |
| ! | TAATGATGTCTAGTATTCTT+AGG | - | chr6.1:79607099-79607118 | MS.gene064061:intron | 25.0% |
| ! | TATCTTCAAATGAGAGTTTA+GGG | + | chr6.1:79608480-79608499 | None:intergenic | 25.0% |
| ! | TGAAATATGTATTGAAACGA+AGG | + | chr6.1:79606324-79606343 | None:intergenic | 25.0% |
| ! | TTACAAAAGCCATTTCTATA+TGG | - | chr6.1:79609549-79609568 | MS.gene064061:CDS | 25.0% |
| ! | TTAGGATACCAATTTCAAAA+TGG | + | chr6.1:79608255-79608274 | None:intergenic | 25.0% |
| ! | TTATCTTCAAATGAGAGTTT+AGG | + | chr6.1:79608481-79608500 | None:intergenic | 25.0% |
| ! | TTTATACCATGTTACTCTTT+GGG | - | chr6.1:79609317-79609336 | MS.gene064061:intron | 25.0% |
| ! | TTTGTAGATATTGAAGAATG+TGG | - | chr6.1:79606877-79606896 | MS.gene064061:CDS | 25.0% |
| !! | ATATCTACAAAAAGGTATAG+TGG | + | chr6.1:79606868-79606887 | None:intergenic | 25.0% |
| !! | ATATTTAGTTCGACTTCTAA+AGG | - | chr6.1:79606495-79606514 | MS.gene064061:intron | 25.0% |
| !! | ATGGTTTAAAATAAAGCAGA+AGG | - | chr6.1:79609976-79609995 | MS.gene064061:intron | 25.0% |
| !! | TATCAGAAAATTTTCCCTTT+AGG | - | chr6.1:79607705-79607724 | MS.gene064061:intron | 25.0% |
| !! | TATCTACAAAAAGGTATAGT+GGG | + | chr6.1:79606867-79606886 | None:intergenic | 25.0% |
| !! | TATGCGATTTCATTCTAAAA+CGG | - | chr6.1:79609232-79609251 | MS.gene064061:intron | 25.0% |
| !! | TATTTAGTTCGACTTCTAAA+GGG | - | chr6.1:79606496-79606515 | MS.gene064061:intron | 25.0% |
| !! | TGATATTTTCCCATTTTGTT+AGG | - | chr6.1:79609663-79609682 | MS.gene064061:intron | 25.0% |
| !! | TTTTATACCATGTTACTCTT+TGG | - | chr6.1:79609316-79609335 | MS.gene064061:intron | 25.0% |
| !!! | CATGTAACTTCTTTTTTTGT+AGG | - | chr6.1:79610136-79610155 | MS.gene064061:intron | 25.0% |
| !!! | CTAAGATTACTTTTCTAGAT+TGG | - | chr6.1:79608271-79608290 | MS.gene064061:intron | 25.0% |
| !!! | TTTTAGAATGAAATCGCATA+TGG | + | chr6.1:79609232-79609251 | None:intergenic | 25.0% |
| AAAAATTAAGGGGGTAATTG+GGG | + | chr6.1:79607666-79607685 | None:intergenic | 30.0% | |
| AAAATGGGAAAATATCAGTG+AGG | + | chr6.1:79609660-79609679 | None:intergenic | 30.0% | |
| AAATGGGAAAATATCAGTGA+GGG | + | chr6.1:79609659-79609678 | None:intergenic | 30.0% | |
| AAGCTCAAGACAGAAAATTA+AGG | + | chr6.1:79607329-79607348 | None:intergenic | 30.0% | |
| AAGTTCTTCAAGATAGCTTA+TGG | + | chr6.1:79607495-79607514 | None:intergenic | 30.0% | |
| AATAAGTGATTCTTGAAGCT+AGG | - | chr6.1:79606593-79606612 | MS.gene064061:intron | 30.0% | |
| ACAAAAATTAAGGGGGTAAT+TGG | + | chr6.1:79607668-79607687 | None:intergenic | 30.0% | |
| AGATATTGAAGAATGTGGAA+TGG | - | chr6.1:79606882-79606901 | MS.gene064061:CDS | 30.0% | |
| ATACTAGACATCATTACCTA+AGG | + | chr6.1:79607095-79607114 | None:intergenic | 30.0% | |
| ATGAGTAAGTTCAAACATGT+TGG | - | chr6.1:79606948-79606967 | MS.gene064061:intron | 30.0% | |
| ATTTCTATATGGACATCAAC+CGG | - | chr6.1:79609560-79609579 | MS.gene064061:CDS | 30.0% | |
| CAAAAATTAAGGGGGTAATT+GGG | + | chr6.1:79607667-79607686 | None:intergenic | 30.0% | |
| CAACGCAAATTCAAACATAA+AGG | - | chr6.1:79606783-79606802 | MS.gene064061:intron | 30.0% | |
| CTTAAATGTAAGATCCTGTT+TGG | + | chr6.1:79607614-79607633 | None:intergenic | 30.0% | |
| GAAGTCATAGTTAGTTGAAT+AGG | + | chr6.1:79609495-79609514 | None:intergenic | 30.0% | |
| GCAATTATATGAAGCAAAGA+AGG | + | chr6.1:79609383-79609402 | None:intergenic | 30.0% | |
| TAGAATAGTACATTGACACT+AGG | + | chr6.1:79609056-79609075 | None:intergenic | 30.0% | |
| TAGTGTCAATGTACTATTCT+AGG | - | chr6.1:79609055-79609074 | MS.gene064061:intron | 30.0% | |
| TATTAACATATTGAGGCCAA+TGG | - | chr6.1:79609952-79609971 | MS.gene064061:intron | 30.0% | |
| TCTTCAATTCTTCTTCATTC+AGG | + | chr6.1:79608017-79608036 | None:intergenic | 30.0% | |
| TGAAATAAGTCAATCCAAAC+AGG | - | chr6.1:79607597-79607616 | MS.gene064061:intron | 30.0% | |
| TGAATGAAGAAGAATTGAAG+AGG | - | chr6.1:79608016-79608035 | MS.gene064061:intron | 30.0% | |
| TTGAAAACTCTATATCTTGC+AGG | - | chr6.1:79608753-79608772 | MS.gene064061:intron | 30.0% | |
| TTGAATGTAATTACATGCGT+CGG | - | chr6.1:79606415-79606434 | MS.gene064061:intron | 30.0% | |
| TTGGGGTAAGATTTATGAAA+TGG | + | chr6.1:79607649-79607668 | None:intergenic | 30.0% | |
| TTGTACTAAATAGCGTATTG+TGG | - | chr6.1:79608173-79608192 | MS.gene064061:intron | 30.0% | |
| ! | AAAGAAGGTGACAATTTTGT+AGG | + | chr6.1:79608957-79608976 | None:intergenic | 30.0% |
| ! | ATTTAGTTCGACTTCTAAAG+GGG | - | chr6.1:79606497-79606516 | MS.gene064061:intron | 30.0% |
| !! | ACATTTTCAAGGAGATGAAT+AGG | - | chr6.1:79608806-79608825 | MS.gene064061:intron | 30.0% |
| !! | GGTAGTTAGATTTTAGAAAG+AGG | + | chr6.1:79609720-79609739 | None:intergenic | 30.0% |
| !! | TATTGGTCTTGTACATCTTA+TGG | - | chr6.1:79609468-79609487 | MS.gene064061:intron | 30.0% |
| !!! | TGTTTTGTTAGCTTTTGCAA+AGG | + | chr6.1:79607365-79607384 | None:intergenic | 30.0% |
| AAGAAAGTAAACCAGTCCTT+AGG | - | chr6.1:79607076-79607095 | MS.gene064061:intron | 35.0% | |
| ACAACAGCACTATAACATAG+CGG | + | chr6.1:79608222-79608241 | None:intergenic | 35.0% | |
| ACAAGATTGTCACCTCATTA+TGG | + | chr6.1:79608854-79608873 | None:intergenic | 35.0% | |
| ACACCTTTGATAAGATGTGT+AGG | - | chr6.1:79606451-79606470 | MS.gene064061:intron | 35.0% | |
| ACATGCTTGACTATCAAAGA+AGG | + | chr6.1:79608972-79608991 | None:intergenic | 35.0% | |
| AGCAACGGTTTCTATCAATA+AGG | + | chr6.1:79608412-79608431 | None:intergenic | 35.0% | |
| ATATCCAAAATGCTTACTCC+AGG | + | chr6.1:79607842-79607861 | None:intergenic | 35.0% | |
| ATATCCATCCTCAGAAATTC+TGG | - | chr6.1:79609011-79609030 | MS.gene064061:intron | 35.0% | |
| ATCTCCTTGAAAATGTCAAG+AGG | + | chr6.1:79608802-79608821 | None:intergenic | 35.0% | |
| CTACACTTCAAAATCAATGC+TGG | + | chr6.1:79606523-79606542 | None:intergenic | 35.0% | |
| CTAGAGTACACAATGTACAT+GGG | + | chr6.1:79610197-79610216 | None:intergenic | 35.0% | |
| GAACTTACTCATCATAACGT+TGG | + | chr6.1:79606940-79606959 | None:intergenic | 35.0% | |
| GAAGCTTGTCCTAACAAAAT+GGG | + | chr6.1:79609675-79609694 | None:intergenic | 35.0% | |
| GCTGATCATGTTATGATAGT+TGG | - | chr6.1:79609587-79609606 | MS.gene064061:intron | 35.0% | |
| GCTTCAAGAATCACTTATTG+AGG | + | chr6.1:79606592-79606611 | None:intergenic | 35.0% | |
| TCCTCCTGCATAATGAAAAT+AGG | + | chr6.1:79609615-79609634 | None:intergenic | 35.0% | |
| TGAAGCTTGTCCTAACAAAA+TGG | + | chr6.1:79609676-79609695 | None:intergenic | 35.0% | |
| TTTCGATGTCATCACTAATG+TGG | - | chr6.1:79608504-79608523 | MS.gene064061:intron | 35.0% | |
| TTTCTATATGGACATCAACC+GGG | - | chr6.1:79609561-79609580 | MS.gene064061:CDS | 35.0% | |
| TTTGGATATGTGTAGCAGTT+GGG | - | chr6.1:79607853-79607872 | MS.gene064061:intron | 35.0% | |
| ! | AAAGCCTCTTGACATTTTCA+AGG | - | chr6.1:79608795-79608814 | MS.gene064061:intron | 35.0% |
| ! | AAGCTAGGATTTGTAGCTTT+TGG | - | chr6.1:79606608-79606627 | MS.gene064061:intron | 35.0% |
| ! | AATCTTGTCCGCTATCATTT+TGG | - | chr6.1:79608866-79608885 | MS.gene064061:intron | 35.0% |
| ! | ACAAAAAGGTATAGTGGGAT+GGG | + | chr6.1:79606862-79606881 | None:intergenic | 35.0% |
| ! | GCGTTGACAAGAATTGATTT+AGG | + | chr6.1:79606769-79606788 | None:intergenic | 35.0% |
| ! | GGATCCTATTTTCATTATGC+AGG | - | chr6.1:79609608-79609627 | MS.gene064061:intron | 35.0% |
| ! | GGTTGATGTCCATATAGAAA+TGG | + | chr6.1:79609561-79609580 | None:intergenic | 35.0% |
| ! | GTATTGATAACTGCTCTGTA+GGG | - | chr6.1:79609816-79609835 | MS.gene064061:intron | 35.0% |
| ! | TACAAAAAGGTATAGTGGGA+TGG | + | chr6.1:79606863-79606882 | None:intergenic | 35.0% |
| ! | TATGTTATAGTGCTGTTGTG+TGG | - | chr6.1:79608223-79608242 | MS.gene064061:intron | 35.0% |
| ! | TCCTATTTTCATTATGCAGG+AGG | - | chr6.1:79609611-79609630 | MS.gene064061:intron | 35.0% |
| ! | TGTATTGATAACTGCTCTGT+AGG | - | chr6.1:79609815-79609834 | MS.gene064061:intron | 35.0% |
| ! | TTAACTTCGGTATTGGAAAC+TGG | - | chr6.1:79608549-79608568 | MS.gene064061:intron | 35.0% |
| ! | TTTTGGATATGTGTAGCAGT+TGG | - | chr6.1:79607852-79607871 | MS.gene064061:intron | 35.0% |
| !! | TATTTTTGCAGAAGCAATGG+AGG | + | chr6.1:79606254-79606273 | None:intergenic | 35.0% |
| !!! | ACTTCTTTTTTTGTAGGCTG+TGG | - | chr6.1:79610142-79610161 | MS.gene064061:intron | 35.0% |
| !!! | GGTAGTAGCCATTTTGAAAT+TGG | - | chr6.1:79608244-79608263 | MS.gene064061:intron | 35.0% |
| !!! | GGTTATTTTTGCAGAAGCAA+TGG | + | chr6.1:79606257-79606276 | None:intergenic | 35.0% |
| AAATATGCACAAAGGGAGAG+AGG | + | chr6.1:79609741-79609760 | None:intergenic | 40.0% | |
| AACTCGTTCTTGCTTGTATC+CGG | + | chr6.1:79607983-79608002 | None:intergenic | 40.0% | |
| ACATATTGAGGCCAATGGTA+TGG | - | chr6.1:79609957-79609976 | MS.gene064061:intron | 40.0% | |
| ACTAGGCACGATTTGTAAGA+AGG | + | chr6.1:79609039-79609058 | None:intergenic | 40.0% | |
| AGAAGAATTGAAGAGGAACC+CGG | - | chr6.1:79608023-79608042 | MS.gene064061:intron | 40.0% | |
| AGACAAACCTGATCAACAGA+GGG | + | chr6.1:79606286-79606305 | None:intergenic | 40.0% | |
| AGACATCATTACCTAAGGAC+TGG | + | chr6.1:79607090-79607109 | None:intergenic | 40.0% | |
| ATAGAAACCGTTGCTTCTGT+AGG | - | chr6.1:79608417-79608436 | MS.gene064061:intron | 40.0% | |
| ATGAATAGGATACTCAAGCC+AGG | - | chr6.1:79608820-79608839 | MS.gene064061:intron | 40.0% | |
| CAAGAACGAGTTGTAGGATT+AGG | - | chr6.1:79607991-79608010 | MS.gene064061:CDS | 40.0% | |
| CCATGTACATTGTGTACTCT+AGG | - | chr6.1:79610195-79610214 | MS.gene064061:CDS | 40.0% | |
| CCTAGAGTACACAATGTACA+TGG | + | chr6.1:79610198-79610217 | None:intergenic | 40.0% | |
| CTAGGCACGATTTGTAAGAA+GGG | + | chr6.1:79609038-79609057 | None:intergenic | 40.0% | |
| GAGTCTTACAAGCAAGCTTA+TGG | - | chr6.1:79607169-79607188 | MS.gene064061:intron | 40.0% | |
| GCACCTACACATCTTATCAA+AGG | + | chr6.1:79606457-79606476 | None:intergenic | 40.0% | |
| GCAGAATCTGATGACCTAAA+GGG | + | chr6.1:79607722-79607741 | None:intergenic | 40.0% | |
| GTACAAGTGATGCATGCTAT+TGG | - | chr6.1:79608571-79608590 | MS.gene064061:intron | 40.0% | |
| GTGGATATATCTCCAAATCC+TGG | - | chr6.1:79610161-79610180 | MS.gene064061:intron | 40.0% | |
| TACAAGCAAGAACGAGTTGT+AGG | - | chr6.1:79607985-79608004 | MS.gene064061:CDS | 40.0% | |
| TAGACAAACCTGATCAACAG+AGG | + | chr6.1:79606287-79606306 | None:intergenic | 40.0% | |
| TGCAGAATCTGATGACCTAA+AGG | + | chr6.1:79607723-79607742 | None:intergenic | 40.0% | |
| TGGAAATCCTCCTCCTTAAA+GGG | + | chr6.1:79606920-79606939 | None:intergenic | 40.0% | |
| TGTCTGCATTCTGATATGTG+TGG | + | chr6.1:79609358-79609377 | None:intergenic | 40.0% | |
| TTACAAGCAAGCTTATGGCT+TGG | - | chr6.1:79607174-79607193 | MS.gene064061:intron | 40.0% | |
| TTCTATATGGACATCAACCG+GGG | - | chr6.1:79609562-79609581 | MS.gene064061:intron | 40.0% | |
| TTGGAAATCCTCCTCCTTAA+AGG | + | chr6.1:79606921-79606940 | None:intergenic | 40.0% | |
| TTGTCAAATAGCGTCTACTG+TGG | + | chr6.1:79608149-79608168 | None:intergenic | 40.0% | |
| ! | AAATGTCAAGAGGCTTTGTC+AGG | + | chr6.1:79608792-79608811 | None:intergenic | 40.0% |
| ! | TACTCCTGGAGTAAGCATTT+TGG | - | chr6.1:79607835-79607854 | MS.gene064061:intron | 40.0% |
| AATAGGATACTCAAGCCAGG+TGG | - | chr6.1:79608823-79608842 | MS.gene064061:intron | 45.0% | |
| ACTCGTTCTTGCTTGTATCC+GGG | + | chr6.1:79607982-79608001 | None:intergenic | 45.0% | |
| AGAAGGGTCCAGAATTTCTG+AGG | + | chr6.1:79609022-79609041 | None:intergenic | 45.0% | |
| AGTTACATGAGCCTCAGCAT+TGG | + | chr6.1:79610125-79610144 | None:intergenic | 45.0% | |
| CATAACATGATCAGCATCCC+CGG | + | chr6.1:79609582-79609601 | None:intergenic | 45.0% | |
| CTTGTACAGTATACTCCGTG+AGG | + | chr6.1:79608444-79608463 | None:intergenic | 45.0% | |
| GCTTCTGCAAAAATAACCGC+TGG | - | chr6.1:79606259-79606278 | MS.gene064061:CDS | 45.0% | |
| GGAAATCCTCCTCCTTAAAG+GGG | + | chr6.1:79606919-79606938 | None:intergenic | 45.0% | |
| TAGTCAGAGCAGCAATTGCA+GGG | + | chr6.1:79607784-79607803 | None:intergenic | 45.0% | |
| TCCTTAAAGGGGAATTGCTC+TGG | + | chr6.1:79606908-79606927 | None:intergenic | 45.0% | |
| TCGATGTGTGTTACGAATCG+AGG | + | chr6.1:79607758-79607777 | None:intergenic | 45.0% | |
| TGACAGTGTTACCAATGCTG+AGG | - | chr6.1:79610111-79610130 | MS.gene064061:intron | 45.0% | |
| TGAGTGCCCAAAGAGTAACA+TGG | + | chr6.1:79609326-79609345 | None:intergenic | 45.0% | |
| TGTGGCAATGTTGTCAAACG+CGG | - | chr6.1:79608070-79608089 | MS.gene064061:intron | 45.0% | |
| TTAGTCAGAGCAGCAATTGC+AGG | + | chr6.1:79607785-79607804 | None:intergenic | 45.0% | |
| TTGCCACATAGCACAGAAAG+CGG | + | chr6.1:79608058-79608077 | None:intergenic | 45.0% | |
| ! | AGAGCAATTCCCCTTTAAGG+AGG | - | chr6.1:79606907-79606926 | MS.gene064061:CDS | 45.0% |
| ! | CATTGTGTACTCTAGGAAGC+TGG | - | chr6.1:79610202-79610221 | MS.gene064061:CDS | 45.0% |
| ! | TGTAATTACATGCGTCGGTG+TGG | - | chr6.1:79606420-79606439 | MS.gene064061:intron | 45.0% |
| !! | CTTACTCCAGGAGTATTGCT+AGG | + | chr6.1:79607830-79607849 | None:intergenic | 45.0% |
| !!! | TTTTAATTAAATTTAAGTAT+TGG | + | chr6.1:79608341-79608360 | None:intergenic | 5.0% |
| AACCCGCTTTCTGTGCTATG+TGG | - | chr6.1:79608052-79608071 | MS.gene064061:intron | 50.0% | |
| AGGAGGATTTGAACCTCCTC+AGG | - | chr6.1:79609628-79609647 | MS.gene064061:intron | 50.0% | |
| ATCAGTGAGGGAGTTACCTG+AGG | + | chr6.1:79609647-79609666 | None:intergenic | 50.0% | |
| ATCTCCAAATCCTGGACGCT+CGG | - | chr6.1:79610169-79610188 | MS.gene064061:CDS | 50.0% | |
| CTCATTATGGCCAATCCACC+TGG | + | chr6.1:79608841-79608860 | None:intergenic | 50.0% | |
| GATACTCAAGCCAGGTGGAT+TGG | - | chr6.1:79608828-79608847 | MS.gene064061:intron | 50.0% | |
| GCCAGAGCAATTCCCCTTTA+AGG | - | chr6.1:79606904-79606923 | MS.gene064061:CDS | 50.0% | |
| GCTTGTATCCGGGTGGAAAA+TGG | + | chr6.1:79607972-79607991 | None:intergenic | 50.0% | |
| GTGAGGACCTACAGAAGCAA+CGG | + | chr6.1:79608427-79608446 | None:intergenic | 50.0% | |
| GTTGCTTCTGTAGGTCCTCA+CGG | - | chr6.1:79608426-79608445 | MS.gene064061:CDS | 50.0% | |
| TGCCACATAGCACAGAAAGC+GGG | + | chr6.1:79608057-79608076 | None:intergenic | 50.0% | |
| TTCCCACCTAGCAATACTCC+TGG | - | chr6.1:79607821-79607840 | MS.gene064061:intron | 50.0% | |
| ! | GCAATTCCCCTTTAAGGAGG+AGG | - | chr6.1:79606910-79606929 | MS.gene064061:CDS | 50.0% |
| ! | GGGTCCAGAATTTCTGAGGA+TGG | + | chr6.1:79609018-79609037 | None:intergenic | 50.0% |
| ! | GGTATAGTGGGATGGGACAA+AGG | + | chr6.1:79606855-79606874 | None:intergenic | 50.0% |
| !! | ACTCCAGGAGTATTGCTAGG+TGG | + | chr6.1:79607827-79607846 | None:intergenic | 50.0% |
| !! | AGAAAGCGGGTTGTCTTACC+GGG | + | chr6.1:79608044-79608063 | None:intergenic | 50.0% |
| !! | CAGAAAGCGGGTTGTCTTAC+CGG | + | chr6.1:79608045-79608064 | None:intergenic | 50.0% |
| !! | CAGGTGGATTGGCCATAATG+AGG | - | chr6.1:79608839-79608858 | MS.gene064061:intron | 50.0% |
| !! | CTCCAGGAGTATTGCTAGGT+GGG | + | chr6.1:79607826-79607845 | None:intergenic | 50.0% |
| !! | TAGGTCAGCCATTTTCCACC+CGG | - | chr6.1:79607961-79607980 | MS.gene064061:CDS | 50.0% |
| AGTGAGGGAGTTACCTGAGG+AGG | + | chr6.1:79609644-79609663 | None:intergenic | 55.0% | |
| CGTTCTTGCTTGTATCCGGG+TGG | + | chr6.1:79607979-79607998 | None:intergenic | 55.0% | |
| CTGATCAACAGAGGGACCAG+CGG | + | chr6.1:79606278-79606297 | None:intergenic | 55.0% | |
| CGCTGGTCCCTCTGTTGATC+AGG | - | chr6.1:79606276-79606295 | MS.gene064061:CDS | 60.0% | |
| GGATCCGAGCGTCCAGGATT+TGG | + | chr6.1:79610176-79610195 | None:intergenic | 60.0% | |
| TACATGGGATCCGAGCGTCC+AGG | + | chr6.1:79610182-79610201 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 79606229 | 79610235 | 79606229 | ID=MS.gene064061 |
| chr6.1 | mRNA | 79606229 | 79610235 | 79606229 | ID=MS.gene064061.t1;Parent=MS.gene064061 |
| chr6.1 | exon | 79610167 | 79610235 | 79610167 | ID=MS.gene064061.t1.exon1;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79610167 | 79610235 | 79610167 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79609513 | 79609580 | 79609513 | ID=MS.gene064061.t1.exon2;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79609513 | 79609580 | 79609513 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79608590 | 79608737 | 79608590 | ID=MS.gene064061.t1.exon3;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79608590 | 79608737 | 79608590 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79608420 | 79608500 | 79608420 | ID=MS.gene064061.t1.exon4;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79608420 | 79608500 | 79608420 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79607939 | 79608025 | 79607939 | ID=MS.gene064061.t1.exon5;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79607939 | 79608025 | 79607939 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79607604 | 79607689 | 79607604 | ID=MS.gene064061.t1.exon6;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79607604 | 79607689 | 79607604 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79606815 | 79606935 | 79606815 | ID=MS.gene064061.t1.exon7;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79606815 | 79606935 | 79606815 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| chr6.1 | exon | 79606229 | 79606306 | 79606229 | ID=MS.gene064061.t1.exon8;Parent=MS.gene064061.t1 |
| chr6.1 | CDS | 79606229 | 79606306 | 79606229 | ID=cds.MS.gene064061.t1;Parent=MS.gene064061.t1 |
| Gene Sequence |
| Protein sequence |
