AlfalfaGEDB | MS.gene064136

M. sativa cultivar XinJiangDaYe / MS.gene064136

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064136.t1	XP_024638134.1	91.7	552	36	4	33	583	59	601	5.10E-234	820.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064136.t1	Q9LI74	48.5	262	134	1	305	565	720	981	1.2e-66	255.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064136.t1	G7JR19	91.7	552	36	4	33	583	32	574	3.7e-234	820.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051838	MS.gene064136	0.821666	3.58E-53	-1.69E-46
MS.gene055206	MS.gene064136	0.807172	5.76E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064136.t1	MTR_4g124070	94.521	584	21	5	1	583	1	574	0.0	1013
MS.gene064136.t1	MTR_4g124070	94.168	583	24	4	1	583	1	573	0.0	1011
MS.gene064136.t1	MTR_1g016290	42.857	406	210	6	168	563	352	745	1.23e-91	298
MS.gene064136.t1	MTR_5g053270	46.947	262	139	0	305	566	718	979	5.44e-81	274
MS.gene064136.t1	MTR_4g087780	46.816	267	136	3	301	565	345	607	3.52e-79	262
MS.gene064136.t1	MTR_1g093850	44.867	263	144	1	304	566	712	973	1.31e-76	262
MS.gene064136.t1	MTR_5g071840	44.361	266	143	3	300	564	157	418	1.82e-71	236
MS.gene064136.t1	MTR_5g071817	44.355	248	133	3	300	546	157	400	4.72e-65	218

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064136.t1	AT1G48280	53.565	519	219	7	77	578	41	554	3.07e-155	457
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	579	840	7.12e-83	277
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	720	981	8.29e-82	276
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	720	981	8.29e-82	276
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	720	981	8.29e-82	276
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	720	981	8.29e-82	276
MS.gene064136.t1	AT3G25690	48.473	262	134	1	305	565	722	983	8.41e-82	276
MS.gene064136.t1	AT4G18570	46.296	270	138	3	301	565	351	618	4.27e-77	257
MS.gene064136.t1	AT1G07120	39.630	270	156	3	304	572	129	392	5.76e-63	213
MS.gene064136.t1	AT4G18570	43.256	215	115	3	301	510	351	563	8.25e-54	193

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Find 115 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGGCCAACACTCAAA+AGG	0.501078	8.4:-10797503	MS.gene064136:CDS
AAACGTGTTGTTGCTGTTTG+TGG	0.362608	8.4:+10798569	None:intergenic
AAAGTTCTCGAGACCCTGCT+AGG	0.581934	8.4:+10795553	None:intergenic
AACTCCAACACCGAGTCATG+CGG	0.613679	8.4:-10797629	MS.gene064136:CDS
AAGAGTAAAAGCTTCTTCTA+AGG	0.327104	8.4:-10798546	MS.gene064136:CDS
AAGTTTGCAGTCTGAGGTTA+AGG	0.405435	8.4:-10798207	MS.gene064136:CDS
AAGTTTGTTGATTGGCTTGA+TGG	0.337776	8.4:-10797144	MS.gene064136:CDS
AATAATCTTACTTGTCTAAT+AGG	0.277303	8.4:+10796644	None:intergenic
ACAAAAGGGGAGTTCATTAA+TGG	0.342658	8.4:-10797219	MS.gene064136:CDS
ACAAGAGATTTCATCTTACA+AGG	0.523079	8.4:-10796713	MS.gene064136:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGAAGCTAATCCTG+AGG	-	chr8.4:10796518-10796537	MS.gene064136:CDS	30.0%
AAGAGTAAAAGCTTCTTCTA+AGG	-	chr8.4:10795661-10795680	MS.gene064136:intron	30.0%
AAGTCTAATAAGCTAAGTAC+CGG	-	chr8.4:10798224-10798243	MS.gene064136:CDS	30.0%
ACAAGAGATTTCATCTTACA+AGG	-	chr8.4:10797494-10797513	MS.gene064136:CDS	30.0%
ACATCTTCAATTCAAAGTGT+TGG	+	chr8.4:10798252-10798271	None:intergenic	30.0%
AGAAAATAAGTCAGACTAAG+CGG	-	chr8.4:10797287-10797306	MS.gene064136:intron	30.0%
AGACATGAAGAACAATTCAA+AGG	-	chr8.4:10795772-10795791	MS.gene064136:intron	30.0%
CAAAAGAACATATGATGAGT+AGG	-	chr8.4:10798161-10798180	MS.gene064136:CDS	30.0%
CAAGTTAACACTCTAAACTA+AGG	+	chr8.4:10796303-10796322	None:intergenic	30.0%
CATATATATTAGCTGCATCA+AGG	+	chr8.4:10797137-10797156	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	10795530	10798699	10795530	ID=MS.gene064136
chr8.4	mRNA	10795530	10798699	10795530	ID=MS.gene064136.t1;Parent=MS.gene064136
chr8.4	exon	10798076	10798699	10798076	ID=MS.gene064136.t1.exon1;Parent=MS.gene064136.t1
chr8.4	CDS	10798076	10798699	10798076	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10797351	10797794	10797351	ID=MS.gene064136.t1.exon2;Parent=MS.gene064136.t1
chr8.4	CDS	10797351	10797794	10797351	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10797128	10797259	10797128	ID=MS.gene064136.t1.exon3;Parent=MS.gene064136.t1
chr8.4	CDS	10797128	10797259	10797128	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10796655	10796836	10796655	ID=MS.gene064136.t1.exon4;Parent=MS.gene064136.t1
chr8.4	CDS	10796655	10796836	10796655	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10796451	10796562	10796451	ID=MS.gene064136.t1.exon5;Parent=MS.gene064136.t1
chr8.4	CDS	10796451	10796562	10796451	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10796192	10796335	10796192	ID=MS.gene064136.t1.exon6;Parent=MS.gene064136.t1
chr8.4	CDS	10796192	10796335	10796192	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1
chr8.4	exon	10795530	10795643	10795530	ID=MS.gene064136.t1.exon7;Parent=MS.gene064136.t1
chr8.4	CDS	10795530	10795643	10795530	ID=cds.MS.gene064136.t1;Parent=MS.gene064136.t1

Gene Sequence

>MS.gene064136

ATGAAGCAGAAAACACCAACATCAACAACTACAACCACACCAAGAAGTGTGTTGAAACATCATCAACAACAACAACATAATGATAATAATAAGTCTCTACAAAGTGTTCCACAAACAGCAACAACACGTTTAAGAGTAAAAGCTTCTTCTAAGGCTAAAGAATCACCAAAAACACCACCAGAAATTGTTAATAGAGTCTCTACCATTTCATCATCATCAACAAGAGCTAAGTCAGTGCCTCCAGACATGAAGAACAATTCAAAGGCCAAAAGAAGTATTTTTATGAACAAGGTTGTTAAATCCATTGAAGAAGAGGTTGAAAGTTCTCACAAGGGTAGTAGAGAAGGTGAAGTGGCTAAGGTTGTTGTTGTTGCTCCTCCGCGGCGAAGGAGGATTGAGGAGGATGATCCTGATGTGAAGGAGAAGAAAGAGTTGCTGGAGAAGCTTGAGGTGAGTGAGAATTTGATCAAAAGTTTGCAGTCTGAGGTTAAGGCCTTGAAGGATGAATTGAATCAAGTTAAGAGCTTGAACATTGATCTTGAGTCTCAGAATATAAAGCTTAATCAGCACCTTGCCTCTGCTGAAGCTAAGATATCAGCTTTTGGCACTAGTAGTACTAGAAAGGTGAGAAACTTATATATGATTTTTTTTTTTGATTTGCTTCAAAGTGCATGGAATGTGTGTTTTTTTTTTTTTTATCTCTTTGTAGTTTCAAGTGTATTAATTCATTCATTAGAATCATTTAATCAATCATTGTTTGATTGGAATTACCTTAGTTTAGAGTGTTAACTTGTATGGTGATTACAAAATTGAGATCAATTATTTGTTTTTATATGCCTAAAATTGTATCTATCTCAAACTGTTTCCTTAGCAATGAATCTGATTTTTGTTTTTCTTGAATGAAGAAGGAGCCAATTGGAGAACGCCAAAGTCCTAAATTTAAAGACATACAAAAAATCATTGCTGACAAATTGGAAATGTCTAAGGTAAAAAAAGAAGCTAATCCTGAGGTGATTTTTGTTAAATCTTCAATCCCAGCTCCAGCTCCAACTCCAACACCGAGTCATGCGGCCATTCGTGAAATTACAAGTTTAGGAAGAAAATCTCCACCCAGCCACTGCCTCATGCCACCTCCACCACCTCCGCCACCACCAATTCCCTCTCGGCCTATGGCAAAATTGGCCAACACTCAAAAGGCTCCTGCAATTGTCCAACTGTTTCATTCCTTAAAGAATCAGGACACAAAGAAAGACTTGAAAGGATCACTTAATCATCAGAAACCGATAGCTAACAGTGCACACAATAGCATTGTAGGAGAAATTCAAAACCGATCGGCTCATCTTTTAGCAGTAAGTAATGCATTCAATTGTGTTAACTAACTTTCAAATTTATTCTATTAATCAATGAGTGATGACTGATATGACTGGCCATTATTTCCAGATTAGGGAGGACATTCAAACAAAAGGGGAGTTCATTAATGGCCTTATAAATAAGGTTGTTGACGCGTCCTATGTGGACATTGAAGACGTCCTCAAGTTTGTTGATTGGCTTGATGGTGAACTATCCACTTTGGTAAGTTTCTGCCAAAGTTATTTATTGGTGGGCCTTGATGCAGCTAATATATATGTTTGTTAATATTCTTTATAAGATAGATAGTTTTGAAAATTTCTTTGTATCTAATTTTGATACATAAAAGATAAGCTCTTTTTTTATTTAAGATCTTTTTAAAATATTGTTTGGCCTAACTTCTTTTGAGGAGAAAATAAGTCAGACTAAGCGGAAGCTAACTGTAAGTATGTATTTGAAAGTGTACATAAAACAAAATGGTTGCTTAGTAGCTTCTTATGATCCGGTATTGTGCAGGCTGATGAGCGTGCTGTCTTGAAGCATTTTAAGTGGCCTGAGAAGAAAGCTGATGCGATGCGTGAGGCTGCAGTTGAGTATCGTGAGCTTAAAATGTTAGAACAAGAGATTTCATCTTACAAGGATGACCCTGACATTCCATGTGTAGCTAGTTTGAAAAAGATGGCAAGCCTATTAGACAAGTAAGATTATTGTGACAATGATTCTATTTATGAACTACTGATATGGCAGATTTTCAGGTGGCAGGGGCTAATTCTTTCCATCGTTGTGATAGGTCTGAGCGGAGCATACAGAAGTTAATCGTGCTGCGAAATTCTGTCATACGTTCATATCAAATGTACAACATTCCAACTGCGTGGATGCTTGATTCAGGAATATCAAGCAAGGTATCGTTTTCTATGCTTTTAGTCGTGAAATGAAAAACAATGACTCTAATACCCCTATTGGCCTTTGAAATGCTTATTAGAACTTGAGTTGATTAGTTATACACCATTTATGCAGATAAAGCAGGCTTCAATGACTCTTGTCAAGATGTACATGAAAAGATTGACAATGGAGCTTAAATCCATTCGAAATTCAGACCGAGAATCTAGTCAAGATTCTCTTCTACTACAGGGTGTGCATTTTGCATACAGAGCCCATCAGGTATTTTTTTTAGTAACTTTTAAGGCATGTAAATGAAATCTGTAACTTGTAATTGTTCAGAAACGCGTCATTTGAACATATCATAAATTGAAGCCATAAATTCTCCTAATGTGCAAGTGCCACCAAAAGAACATATGATGAGTAGGTTTACTACAATCAGGCTTCTGTTCCATCCATTAAAAATTTAAGTCTAATAAGCTAAGTACCGGCACCAACACTTTGAATTGAAGATGTGTGTGGTGTACGGTACTAATATGAAACTAAAATGTGTGCTTACATTCAATCACTTCCATTTTCTTAAATTATTGTTATGATTTTGTGTGTCAATGTCATGTCCGGCGTCTGTATCCATGTCAATGTTTCATAGATAATAAGTGAAAATGAAATGGTTGTAAAAGTTTCGGAAAAATGTAATGCATTGATGATGCATGTAAACAAGTTTGTTTGTGATTGTATCAATGAAGAACCGAAATACCTCTTTCTTTGTATTTTTTGTATCTTTTGAACCAGGTTGCTGTTCTAACATTGTTTTATTTATTGTTTTGTAGTTTGCTGGAGGTTTGGACTCGGAAACATTGTGTGCATTTGAAGAGATAAGACAACGTGTACCAGGACACCTAGCAGGGTCTCGAGAACTTTTAGCTTGCATAGCATCATCATGA

Protein sequence

>MS.gene064136.t1

MKQKTPTSTTTTTPRSVLKHHQQQQHNDNNKSLQSVPQTATTRLRVKASSKAKESPKTPPEIVNRVSTISSSSTRAKSVPPDMKNNSKAKRSIFMNKVVKSIEEEVESSHKGSREGEVAKVVVVAPPRRRRIEEDDPDVKEKKELLEKLEVSENLIKSLQSEVKALKDELNQVKSLNIDLESQNIKLNQHLASAEAKISAFGTSSTRKKEPIGERQSPKFKDIQKIIADKLEMSKVKKEANPEVIFVKSSIPAPAPTPTPSHAAIREITSLGRKSPPSHCLMPPPPPPPPPIPSRPMAKLANTQKAPAIVQLFHSLKNQDTKKDLKGSLNHQKPIANSAHNSIVGEIQNRSAHLLAIREDIQTKGEFINGLINKVVDASYVDIEDVLKFVDWLDGELSTLADERAVLKHFKWPEKKADAMREAAVEYRELKMLEQEISSYKDDPDIPCVASLKKMASLLDKSERSIQKLIVLRNSVIRSYQMYNIPTAWMLDSGISSKIKQASMTLVKMYMKRLTMELKSIRNSDRESSQDSLLLQGVHFAYRAHQFAGGLDSETLCAFEEIRQRVPGHLAGSRELLACIASS