AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055206


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055206.t1 MTR_7g063390 92.105 266 21 0 1 266 1 266 0.0 511
MS.gene055206.t1 MTR_7g063360 86.842 266 35 0 1 266 1 266 6.01e-175 483
MS.gene055206.t1 MTR_7g063260 78.491 265 57 0 1 265 1 265 7.69e-156 434
MS.gene055206.t1 MTR_7g063270 75.472 265 64 1 1 265 1 264 1.83e-151 423
MS.gene055206.t1 MTR_7g063330 74.717 265 65 2 1 265 1 263 1.63e-146 410
MS.gene055206.t1 MTR_7g063320 74.436 266 67 1 1 266 1 265 9.89e-143 401
MS.gene055206.t1 MTR_7g063270 61.509 265 52 3 1 265 1 215 1.46e-110 318
MS.gene055206.t1 MTR_3g068070 58.712 264 105 1 3 266 2 261 3.39e-107 311
MS.gene055206.t1 MTR_4g064883 57.422 256 105 1 11 266 9 260 2.83e-105 306
MS.gene055206.t1 MTR_3g068155 57.308 260 107 1 7 266 10 265 4.15e-103 301
MS.gene055206.t1 MTR_3g068175 56.226 265 112 1 2 266 3 263 2.78e-101 296
MS.gene055206.t1 MTR_4g064887 54.887 266 115 2 1 266 1 261 9.39e-101 295
MS.gene055206.t1 MTR_3g068085 58.566 251 100 1 16 266 15 261 2.28e-100 294
MS.gene055206.t1 MTR_3g068175 55.390 269 112 2 2 266 3 267 4.46e-99 291
MS.gene055206.t1 MTR_3g068065 56.800 250 104 1 16 265 17 262 1.71e-94 279
MS.gene055206.t1 MTR_4g064883 59.500 200 81 0 11 210 9 208 1.85e-84 251
MS.gene055206.t1 MTR_4g064887 56.585 205 88 1 1 205 1 204 1.98e-79 239
MS.gene055206.t1 MTR_7g094510 32.157 255 161 7 16 264 6 254 1.33e-26 104
MS.gene055206.t1 MTR_4g132850 32.558 258 149 7 16 264 7 248 8.53e-26 102
MS.gene055206.t1 MTR_7g094520 31.939 263 159 6 12 264 7 259 9.04e-26 102
MS.gene055206.t1 MTR_3g085740 29.880 251 159 6 22 266 81 320 4.54e-23 96.3
MS.gene055206.t1 MTR_8g442750 28.016 257 172 4 16 264 14 265 2.77e-21 91.3
MS.gene055206.t1 MTR_7g080410 31.720 186 121 4 23 203 45 229 5.29e-21 90.1
MS.gene055206.t1 MTR_7g080410 31.720 186 121 4 23 203 45 229 8.57e-21 90.1
MS.gene055206.t1 MTR_4g131740 29.545 264 162 7 16 266 40 292 2.45e-20 88.6
MS.gene055206.t1 MTR_4g052350 30.350 257 162 8 16 266 14 259 2.59e-20 87.8
MS.gene055206.t1 MTR_1g068955 30.620 258 158 6 16 262 14 261 1.02e-19 86.7
MS.gene055206.t1 MTR_4g058810 29.457 258 171 8 16 266 11 264 4.77e-19 84.7
MS.gene055206.t1 MTR_4g058840 29.344 259 170 7 16 266 11 264 1.26e-18 83.6
MS.gene055206.t1 MTR_4g058820 29.344 259 170 7 16 266 11 264 1.26e-18 83.6
MS.gene055206.t1 MTR_1196s0010 32.000 250 149 10 21 264 279 513 2.82e-17 81.6
MS.gene055206.t1 MTR_1g082760 26.538 260 174 7 16 266 40 291 2.99e-17 79.7
MS.gene055206.t1 MTR_4g052300 28.346 254 171 6 16 266 8 253 3.90e-17 79.3
MS.gene055206.t1 MTR_6g023990 28.782 271 177 8 1 264 1 262 1.28e-16 77.8
MS.gene055206.t1 MTR_7g083870 31.034 261 161 9 16 265 35 287 1.34e-16 78.2
MS.gene055206.t1 MTR_7g113650 27.099 262 170 7 16 266 40 291 1.48e-16 77.8
MS.gene055206.t1 MTR_4g052340 27.953 254 172 6 16 266 14 259 1.97e-16 77.4
MS.gene055206.t1 MTR_4g052320 28.740 254 171 5 16 266 8 254 2.51e-16 77.0
MS.gene055206.t1 MTR_6g023590 28.077 260 165 7 16 264 13 261 1.52e-15 74.7
MS.gene055206.t1 MTR_6g023610 27.778 270 180 8 1 264 1 261 1.60e-15 74.7
MS.gene055206.t1 MTR_7g071680 29.151 271 166 8 16 265 29 294 3.59e-15 74.3
MS.gene055206.t1 MTR_8g044240 30.049 203 126 7 16 206 69 267 4.63e-15 74.3
MS.gene055206.t1 MTR_7g105460 27.237 257 173 7 16 266 13 261 4.28e-14 70.9
MS.gene055206.t1 MTR_4g078630 27.863 262 168 7 16 265 19 271 6.81e-14 70.5
MS.gene055206.t1 MTR_4g058830 31.847 157 101 5 113 266 57 210 1.04e-12 66.2
MS.gene055206.t1 MTR_7g110160 30.116 259 151 7 13 266 3 236 1.20e-12 66.2
MS.gene055206.t1 MTR_6g023950 27.559 254 174 7 16 264 13 261 2.93e-12 65.5
MS.gene055206.t1 MTR_8g096620 28.634 227 152 7 15 234 44 267 8.89e-12 64.7
MS.gene055206.t1 MTR_3g098470 33.784 148 95 3 12 158 28 173 1.14e-11 64.3
MS.gene055206.t1 MTR_3g020670 29.885 261 166 8 16 265 16 270 1.50e-11 63.5
MS.gene055206.t1 MTR_4g086410 31.579 209 125 8 18 213 6 209 1.80e-11 64.3
MS.gene055206.t1 MTR_7g107670 28.077 260 169 8 16 265 33 284 1.83e-11 63.5
MS.gene055206.t1 MTR_1579s0020 33.333 84 51 1 182 265 1 79 1.94e-11 59.3
MS.gene055206.t1 MTR_1g031180 34.228 149 93 4 12 158 33 178 6.69e-11 62.0
MS.gene055206.t1 MTR_7g105580 26.772 254 158 9 16 265 8 237 8.51e-11 61.2
MS.gene055206.t1 MTR_6g023600 27.451 255 167 7 16 264 13 255 9.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055206.t1 AT5G06060 58.594 256 102 1 11 266 4 255 5.00e-110 318
MS.gene055206.t1 AT1G07440 56.031 257 108 1 10 266 6 257 2.36e-103 301
MS.gene055206.t1 AT2G29360 54.887 266 116 1 1 266 1 262 1.58e-99 292
MS.gene055206.t1 AT2G29290 54.688 256 112 1 11 266 2 253 3.88e-99 291
MS.gene055206.t1 AT2G29340 54.297 256 113 2 11 266 2 253 6.63e-99 290
MS.gene055206.t1 AT2G29260 54.510 255 112 1 12 266 64 314 2.31e-98 291
MS.gene055206.t1 AT2G29340 54.297 256 113 2 11 266 2 253 2.67e-98 290
MS.gene055206.t1 AT2G29300 54.264 258 111 3 11 266 2 254 2.69e-97 286
MS.gene055206.t1 AT2G29320 55.212 259 108 4 11 266 7 260 3.67e-97 286
MS.gene055206.t1 AT2G29310 54.688 256 112 2 11 266 2 253 7.92e-97 285
MS.gene055206.t1 AT2G30670 53.516 256 115 2 11 266 2 253 1.14e-96 284
MS.gene055206.t1 AT2G29300 54.475 257 110 3 11 265 2 253 4.12e-96 284
MS.gene055206.t1 AT2G29150 54.135 266 117 3 1 266 1 261 5.67e-96 283
MS.gene055206.t1 AT2G29330 54.297 256 113 2 11 266 2 253 7.34e-96 282
MS.gene055206.t1 AT2G29350 54.475 257 112 1 10 266 9 260 1.19e-94 280
MS.gene055206.t1 AT2G29370 54.789 261 111 3 8 266 7 262 4.27e-94 278
MS.gene055206.t1 AT1G07450 52.734 256 114 3 12 266 4 253 1.49e-92 274
MS.gene055206.t1 AT2G29320 53.586 237 103 3 32 266 11 242 1.75e-85 256
MS.gene055206.t1 AT2G29290 52.564 234 107 1 33 266 7 236 4.92e-85 254
MS.gene055206.t1 AT2G29310 52.766 235 107 2 32 266 21 251 7.64e-83 249
MS.gene055206.t1 AT2G29340 55.000 200 90 0 11 210 2 201 3.59e-78 235
MS.gene055206.t1 AT2G29340 55.000 200 90 0 11 210 2 201 3.59e-78 235
MS.gene055206.t1 AT2G29350 52.212 226 103 1 41 266 2 222 1.69e-77 234
MS.gene055206.t1 AT2G29320 58.462 195 79 2 11 203 7 201 3.44e-77 233
MS.gene055206.t1 AT2G29350 57.653 196 83 0 10 205 9 204 3.28e-76 231
MS.gene055206.t1 AT2G29310 55.000 200 90 0 11 210 2 201 9.76e-76 229
MS.gene055206.t1 AT1G07440 58.537 164 68 0 10 173 6 169 5.32e-67 206
MS.gene055206.t1 AT2G29310 52.514 179 85 0 32 210 21 199 1.34e-61 193
MS.gene055206.t1 AT2G29170 64.583 96 33 1 8 102 7 102 1.80e-39 133
MS.gene055206.t1 AT3G03980 34.074 270 161 4 7 264 5 269 9.78e-35 126
MS.gene055206.t1 AT5G18210 34.363 259 155 6 15 264 7 259 6.07e-32 119
MS.gene055206.t1 AT4G13180 34.109 258 156 6 16 266 13 263 6.08e-30 113
MS.gene055206.t1 AT5G18210 33.333 261 146 7 15 266 7 248 3.51e-28 109
MS.gene055206.t1 AT4G05530 32.400 250 160 5 16 264 9 250 2.03e-25 101
MS.gene055206.t1 AT3G04000 33.948 271 159 7 7 263 5 269 3.83e-25 100
MS.gene055206.t1 AT1G24360 32.271 251 153 8 22 266 80 319 1.87e-24 100
MS.gene055206.t1 AT3G05260 31.939 263 155 7 16 266 37 287 2.77e-24 99.0
MS.gene055206.t1 AT1G54870 29.572 257 164 7 16 263 84 332 7.98e-24 98.6
MS.gene055206.t1 AT1G54870 29.572 257 164 7 16 263 82 330 9.71e-24 98.6
MS.gene055206.t1 AT3G12800 26.616 263 169 7 16 264 10 262 2.05e-21 91.7
MS.gene055206.t1 AT3G03330 30.457 197 132 3 12 203 37 233 9.84e-20 87.4
MS.gene055206.t1 AT3G55290 29.434 265 162 9 16 266 17 270 3.43e-19 85.1
MS.gene055206.t1 AT3G55290 29.434 265 162 9 16 266 18 271 3.66e-19 85.1
MS.gene055206.t1 AT3G55310 27.099 262 172 8 16 266 17 270 4.16e-17 79.3
MS.gene055206.t1 AT1G63380 26.538 260 177 7 16 266 15 269 6.09e-17 79.0
MS.gene055206.t1 AT1G63380 26.538 260 177 7 16 266 17 271 6.13e-17 79.0
MS.gene055206.t1 AT1G63380 26.538 260 177 7 16 266 19 273 6.16e-17 79.0
MS.gene055206.t1 AT1G63380 26.538 260 177 7 16 266 22 276 7.71e-17 78.6
MS.gene055206.t1 AT3G26760 28.782 271 170 8 9 265 29 290 1.50e-16 78.2
MS.gene055206.t1 AT3G46170 27.863 262 170 8 16 266 26 279 7.39e-16 75.9
MS.gene055206.t1 AT3G51680 28.114 281 181 7 1 265 20 295 1.59e-15 75.1
MS.gene055206.t1 AT5G04900 30.612 196 121 7 22 206 83 274 1.77e-15 75.5
MS.gene055206.t1 AT5G50690 29.101 189 123 6 16 199 45 227 2.10e-15 74.3
MS.gene055206.t1 AT5G50590 29.101 189 123 6 16 199 45 227 2.10e-15 74.3
MS.gene055206.t1 AT1G62610 25.769 260 179 7 16 266 15 269 3.37e-15 73.9
MS.gene055206.t1 AT1G62610 25.769 260 179 7 16 266 13 267 3.39e-15 73.9
MS.gene055206.t1 AT1G62610 25.769 260 179 7 16 266 14 268 3.53e-15 73.9
MS.gene055206.t1 AT1G62610 25.769 260 179 7 16 266 19 273 3.63e-15 73.9
MS.gene055206.t1 AT3G06060 27.807 187 126 3 16 198 37 218 3.88e-15 74.3
MS.gene055206.t1 AT4G03140 28.125 256 174 8 16 265 78 329 4.63e-15 74.3
MS.gene055206.t1 AT5G50690 29.101 189 123 6 16 199 45 227 4.86e-15 73.9
MS.gene055206.t1 AT5G50590 29.101 189 123 6 16 199 45 227 4.86e-15 73.9
MS.gene055206.t1 AT3G06060 27.807 187 126 3 16 198 54 235 4.96e-15 74.3
MS.gene055206.t1 AT3G42960 30.337 267 164 9 11 265 5 261 7.94e-15 72.8
MS.gene055206.t1 AT3G03350 32.484 157 93 3 51 204 207 353 9.49e-15 73.6
MS.gene055206.t1 AT2G17845 24.046 262 183 7 16 266 47 303 3.55e-14 71.6
MS.gene055206.t1 AT5G65205 30.726 179 117 4 22 199 12 184 9.01e-14 70.1
MS.gene055206.t1 AT4G13250 28.293 205 126 4 22 206 165 368 1.92e-13 70.1
MS.gene055206.t1 AT3G47350 27.854 219 143 8 15 226 43 253 2.63e-13 68.9
MS.gene055206.t1 AT3G47350 27.854 219 143 8 15 226 43 253 2.80e-13 68.9
MS.gene055206.t1 AT1G52340 29.699 266 163 10 16 265 18 275 3.54e-13 68.6
MS.gene055206.t1 AT5G10050 28.421 190 129 4 22 210 11 194 5.55e-13 67.8
MS.gene055206.t1 AT1G49670 31.222 221 134 9 18 225 6 221 1.08e-12 68.2
MS.gene055206.t1 AT1G49670 31.222 221 134 9 18 225 6 221 1.20e-12 67.8
MS.gene055206.t1 AT3G26770 28.517 263 165 9 16 265 41 293 1.48e-12 66.6
MS.gene055206.t1 AT2G47140 26.357 258 174 7 16 266 6 254 4.13e-12 65.1
MS.gene055206.t1 AT3G29260 28.195 266 158 9 16 266 6 253 3.09e-11 62.4
MS.gene055206.t1 AT5G50600 29.146 199 128 8 15 207 44 235 4.03e-11 62.8
MS.gene055206.t1 AT5G50700 29.146 199 128 8 15 207 44 235 4.03e-11 62.8
MS.gene055206.t1 AT5G19200 25.000 200 141 3 16 211 35 229 6.11e-11 62.4
MS.gene055206.t1 AT3G29250 29.119 261 169 8 13 266 41 292 6.58e-11 62.0

Find 54 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGAAGAGTTAGCAGAATT+TGG 0.185342 7.4:-40759483 MS.gene055206:CDS
ATAATTAAAATTACCTTTAG+AGG 0.208184 7.4:+40758226 None:intergenic
CCATTCCAATGCTAAGTTCT+TGG 0.213276 7.4:+40758095 None:intergenic
GTATACATATCCTCAATTTC+AGG 0.273951 7.4:-40758284 MS.gene055206:CDS
ACCTGTGATGACCTTACTTT+TGG 0.297664 7.4:-40758034 MS.gene055206:CDS
GATCAAAGATGGTCACTAAA+AGG 0.312455 7.4:-40759660 MS.gene055206:CDS
ACCAATGCTGATATATCTTT+AGG 0.318330 7.4:+40757202 None:intergenic
TTAACAAATGTTTGAAAGAA+TGG 0.322643 7.4:-40759422 MS.gene055206:CDS
GTTCTTGGTGCATTGATTCA+TGG 0.329472 7.4:+40758110 None:intergenic
GTATTATCTAAGATGGGTTT+AGG 0.353458 7.4:+40758410 None:intergenic
TTCATCAGTATTATCTAAGA+TGG 0.370033 7.4:+40758403 None:intergenic
CGTGCTAATGTTGTGGCTCC+TGG 0.373198 7.4:-40758057 MS.gene055206:CDS
GGAATGACAGCTCTAGTAAC+TGG 0.387510 7.4:-40759639 MS.gene055206:CDS
AACTGTTAGGTAAACAATGC+TGG 0.396239 7.4:-40758443 MS.gene055206:intron
ATGGTAACCAGACACAAAAT+TGG 0.420948 7.4:+40758358 None:intergenic
GGTGTGCAAGTTGGCACAAA+TGG 0.434463 7.4:+40758339 None:intergenic
CCAGCTTCTTCACACATAAC+CGG 0.436902 7.4:-40757163 MS.gene055206:CDS
ATCTGCTGCTATAATTTGTC+CGG 0.440485 7.4:+40757144 None:intergenic
GAAGATATAACAACTACAAT+TGG 0.449713 7.4:-40758383 MS.gene055206:CDS
ACAGTAGCTTCAATCTTTCA+AGG 0.454086 7.4:-40759324 MS.gene055206:CDS
TCTGTTTACGCAGCCTCTAA+AGG 0.464925 7.4:-40758239 MS.gene055206:intron
CATAGCTGTCTCCAAAAGTA+AGG 0.485794 7.4:+40758023 None:intergenic
ATCAATCAGGTATGCAATTG+TGG 0.492239 7.4:-40759502 MS.gene055206:intron
CGGAGTGGATAATGCTATCA+AGG 0.492998 7.4:-40757263 MS.gene055206:CDS
ACTGGTGGAACCCGAGGCAT+AGG 0.498705 7.4:-40759621 MS.gene055206:CDS
CCAAGAACTTAGCATTGGAA+TGG 0.520563 7.4:-40758095 MS.gene055206:CDS
CAAGAACTTAGCATTGGAAT+GGG 0.525445 7.4:-40758094 MS.gene055206:CDS
AGTAAGGTCATCACAGGTCC+AGG 0.529196 7.4:+40758039 None:intergenic
GAGAACTGACCCTATGCCTC+GGG 0.531174 7.4:+40759611 None:intergenic
TCATCAGTATTATCTAAGAT+GGG 0.531379 7.4:+40758404 None:intergenic
CAAACACCTAGTGGTCGGAT+TGG 0.531397 7.4:-40757229 MS.gene055206:CDS
ACCTAAAGATATATCAGCAT+TGG 0.531601 7.4:-40757203 MS.gene055206:CDS
AGCTTTGAGACCTGAAATTG+AGG 0.537196 7.4:+40758274 None:intergenic
ACTGTTAGGTAAACAATGCT+GGG 0.538511 7.4:-40758442 MS.gene055206:intron
CCGGTTATGTGTGAAGAAGC+TGG 0.541993 7.4:+40757163 None:intergenic
GGTTCTCCAATCCGACCACT+AGG 0.544965 7.4:+40757223 None:intergenic
ATGCACCAAGAACTTAGCAT+TGG 0.554507 7.4:-40758100 MS.gene055206:CDS
TTGAAAGAATGGAAAGGCAA+AGG 0.557601 7.4:-40759411 MS.gene055206:CDS
TCCAAAAGTAAGGTCATCAC+AGG 0.566176 7.4:+40758033 None:intergenic
GCTGCGTAAACAGAAACAAA+AGG 0.566455 7.4:+40758248 None:intergenic
CTTAGCATTGGAATGGGCAA+AGG 0.572011 7.4:-40758088 MS.gene055206:CDS
AGAGAACTGACCCTATGCCT+CGG 0.576626 7.4:+40759610 None:intergenic
GCAGCTTCAAAGATCAAAGA+TGG 0.579135 7.4:-40759671 MS.gene055206:CDS
TAATATTCGTGCTAATGTTG+TGG 0.584061 7.4:-40758064 MS.gene055206:CDS
GGACAAATTATAGCAGCAGA+TGG 0.598661 7.4:-40757142 MS.gene055206:CDS
CTGGTGGAACCCGAGGCATA+GGG 0.613722 7.4:-40759620 MS.gene055206:intron
CAAATTATAGCAGCAGATGG+AGG 0.615495 7.4:-40757139 MS.gene055206:CDS
CTTGATAGCATTATCCACTC+CGG 0.625119 7.4:+40757264 None:intergenic
CTAGTAACTGGTGGAACCCG+AGG 0.629591 7.4:-40759627 MS.gene055206:CDS
AAATGTTTGAAAGAATGGAA+AGG 0.648117 7.4:-40759417 MS.gene055206:CDS
TGTCTCAAACACCTAGTGGT+CGG 0.653560 7.4:-40757234 MS.gene055206:CDS
ATAGTGTCTCAAACACCTAG+TGG 0.659894 7.4:-40757238 MS.gene055206:CDS
ATAGAAATTAGATGCCGGAG+TGG 0.664921 7.4:-40757278 MS.gene055206:intron
ATGACAGCTCTAGTAACTGG+TGG 0.670365 7.4:-40759636 MS.gene055206:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAAATTATTTTTTAAAAT+AGG + chr7.4:40759121-40759140 None:intergenic 0.0%
!! TTATTAAAGTTATTAAGTTT+CGG - chr7.4:40757716-40757735 MS.gene055206:intron 10.0%
!!! TAACAAAAAAAACATATTTT+TGG - chr7.4:40758181-40758200 MS.gene055206:intron 10.0%
!!! TAATTTTTTTATATTTTTGG+TGG - chr7.4:40758145-40758164 MS.gene055206:intron 10.0%
!!! TTATTAAAGTTTTTTTTGAA+AGG - chr7.4:40757688-40757707 MS.gene055206:intron 10.0%
!! ATAATTAAAATTACCTTTAG+AGG + chr7.4:40758593-40758612 None:intergenic 15.0%
!! CATAATTTAGAAATTATGTT+TGG + chr7.4:40759198-40759217 None:intergenic 15.0%
!! TAATTAGACAAAGAAAAAAA+AGG + chr7.4:40757758-40757777 None:intergenic 15.0%
!! TTTCTCTTAAAAAAATTAGT+CGG - chr7.4:40759380-40759399 MS.gene055206:CDS 15.0%
!!! AATAGGTAATTTAGTTTTTT+TGG + chr7.4:40759104-40759123 None:intergenic 15.0%
!!! CAAAAAATATTTTTTTGTAG+AGG - chr7.4:40759009-40759028 MS.gene055206:intron 15.0%
!!! CTTAAAAGTGATTTTTTTTA+AGG + chr7.4:40758907-40758926 None:intergenic 15.0%
!!! TAATCATTCAAATTTGATTT+TGG - chr7.4:40757539-40757558 MS.gene055206:intron 15.0%
!! ACTTTAATAAAATACCATTG+TGG + chr7.4:40757678-40757697 None:intergenic 20.0%
!! CTTTAATAAAATACCATTGT+GGG + chr7.4:40757677-40757696 None:intergenic 20.0%
!! TTAACAAATGTTTGAAAGAA+TGG - chr7.4:40757394-40757413 MS.gene055206:intron 20.0%
!! TTCTCTTAAAAAAATTAGTC+GGG - chr7.4:40759381-40759400 MS.gene055206:CDS 20.0%
!!! AAATTTTTAAAAACCCACAA+TGG - chr7.4:40757661-40757680 MS.gene055206:intron 20.0%
!!! ATTTTTTTTTAGAGGATAGT+AGG + chr7.4:40758116-40758135 None:intergenic 20.0%
!!! CAGTTGACTTTATTATAAAA+TGG + chr7.4:40757975-40757994 None:intergenic 20.0%
!!! CTTTTTTTGAATAATCAATC+AGG - chr7.4:40757301-40757320 MS.gene055206:intron 20.0%
!!! TTAGCAAGATTTTTTTTTAG+AGG + chr7.4:40758124-40758143 None:intergenic 20.0%
!!! TTTTTATAGAAATTAGATGC+CGG - chr7.4:40759533-40759552 MS.gene055206:intron 20.0%
! AAATGTTTGAAAGAATGGAA+AGG - chr7.4:40757399-40757418 MS.gene055206:intron 25.0%
! AGGATACAAAAGTTCAAATT+AGG + chr7.4:40759468-40759487 None:intergenic 25.0%
! ATTGAATTTCTCAAACTGTT+AGG - chr7.4:40758360-40758379 MS.gene055206:CDS 25.0%
! CAATACATTGTAATATGCAT+TGG + chr7.4:40757851-40757870 None:intergenic 25.0%
! CATTATAGCTAAAGCATAAA+AGG + chr7.4:40759488-40759507 None:intergenic 25.0%
! CTTAAATAAGCTATAACAGA+CGG + chr7.4:40758874-40758893 None:intergenic 25.0%
! GAAGATATAACAACTACAAT+TGG - chr7.4:40758433-40758452 MS.gene055206:CDS 25.0%
! TATACAATCAAAACAAAGCA+GGG - chr7.4:40757608-40757627 MS.gene055206:intron 25.0%
! TCATATTATACCCTTTAACT+TGG - chr7.4:40758619-40758638 MS.gene055206:intron 25.0%
! TTATACAATCAAAACAAAGC+AGG - chr7.4:40757607-40757626 MS.gene055206:intron 25.0%
! TTCATCAGTATTATCTAAGA+TGG + chr7.4:40758416-40758435 None:intergenic 25.0%
!! TCATCAGTATTATCTAAGAT+GGG + chr7.4:40758415-40758434 None:intergenic 25.0%
!!! ATCCAGATGCTTTTAAAAAA+GGG + chr7.4:40758501-40758520 None:intergenic 25.0%
!!! ATTGCTATTTCTATCTATGT+AGG - chr7.4:40758681-40758700 MS.gene055206:intron 25.0%
!!! CTCTTTTTAATTGTACCATT+GGG - chr7.4:40758206-40758225 MS.gene055206:intron 25.0%
!!! TATCCAGATGCTTTTAAAAA+AGG + chr7.4:40758502-40758521 None:intergenic 25.0%
!!! TTTTTAAAAGCATCTGGATA+TGG - chr7.4:40758502-40758521 MS.gene055206:intron 25.0%
AACCCTTAAAGGTGAATAAA+CGG - chr7.4:40757801-40757820 MS.gene055206:intron 30.0%
ACCAATGCTGATATATCTTT+AGG + chr7.4:40759617-40759636 None:intergenic 30.0%
ACCTAAAGATATATCAGCAT+TGG - chr7.4:40759613-40759632 MS.gene055206:intron 30.0%
AGTTCAAATTAGGCCAAATT+AGG + chr7.4:40759458-40759477 None:intergenic 30.0%
ATACAATCAAAACAAAGCAG+GGG - chr7.4:40757609-40757628 MS.gene055206:intron 30.0%
ATATGTAACAAACATGCTCT+TGG - chr7.4:40759243-40759262 MS.gene055206:intron 30.0%
GCAAAAGGAAAAATAGATTC+TGG - chr7.4:40759156-40759175 MS.gene055206:intron 30.0%
GTATACATATCCTCAATTTC+AGG - chr7.4:40758532-40758551 MS.gene055206:intron 30.0%
TAATATTCGTGCTAATGTTG+TGG - chr7.4:40758752-40758771 MS.gene055206:intron 30.0%
TTACGTTAAACAAACGCAAA+AGG - chr7.4:40759141-40759160 MS.gene055206:intron 30.0%
! GTATTATCTAAGATGGGTTT+AGG + chr7.4:40758409-40758428 None:intergenic 30.0%
! TGTCTAATTAACTAGCTTAG+TGG - chr7.4:40757768-40757787 MS.gene055206:intron 30.0%
! TTTCCATCAATTTTTCACGT+TGG + chr7.4:40757473-40757492 None:intergenic 30.0%
!! GCTCTTTTTAATTGTACCAT+TGG - chr7.4:40758205-40758224 MS.gene055206:intron 30.0%
!!! GATTTAGTTTTGTTGAGACA+TGG - chr7.4:40757994-40758013 MS.gene055206:intron 30.0%
AAATGCTAACAAGTGCTCTT+AGG + chr7.4:40758035-40758054 None:intergenic 35.0%
AAATTAGGCCAAATTAGGCA+TGG + chr7.4:40759453-40759472 None:intergenic 35.0%
AACTGTTAGGTAAACAATGC+TGG - chr7.4:40758373-40758392 MS.gene055206:CDS 35.0%
AAGTGTTCACGTATTGAGAA+GGG - chr7.4:40759284-40759303 MS.gene055206:intron 35.0%
AATGCTAACAAGTGCTCTTA+GGG + chr7.4:40758034-40758053 None:intergenic 35.0%
ACAGTAGCTTCAATCTTTCA+AGG - chr7.4:40757492-40757511 MS.gene055206:intron 35.0%
ACCCTTAAAGGTGAATAAAC+GGG - chr7.4:40757802-40757821 MS.gene055206:intron 35.0%
ACTGTTAGGTAAACAATGCT+GGG - chr7.4:40758374-40758393 MS.gene055206:CDS 35.0%
ATCAATCAGGTATGCAATTG+TGG - chr7.4:40757314-40757333 MS.gene055206:intron 35.0%
ATGGTAACCAGACACAAAAT+TGG + chr7.4:40758461-40758480 None:intergenic 35.0%
CTAAATTGCCATGCCTAATT+TGG - chr7.4:40759442-40759461 MS.gene055206:CDS 35.0%
CTGCAAAGTTCCAAGTTAAA+GGG + chr7.4:40758632-40758651 None:intergenic 35.0%
GATCAAAGATGGTCACTAAA+AGG - chr7.4:40757156-40757175 MS.gene055206:CDS 35.0%
TCCCGTTTATTCACCTTTAA+GGG + chr7.4:40757806-40757825 None:intergenic 35.0%
TCTGCAAAGTTCCAAGTTAA+AGG + chr7.4:40758633-40758652 None:intergenic 35.0%
TGACCAACGTGAAAAATTGA+TGG - chr7.4:40757467-40757486 MS.gene055206:intron 35.0%
TTCCCGTTTATTCACCTTTA+AGG + chr7.4:40757807-40757826 None:intergenic 35.0%
TTGAAAGAATGGAAAGGCAA+AGG - chr7.4:40757405-40757424 MS.gene055206:intron 35.0%
! ATCTGCTGCTATAATTTGTC+CGG + chr7.4:40759675-40759694 None:intergenic 35.0%
! ATTGGTACCAATTTTGTGTC+TGG - chr7.4:40758451-40758470 MS.gene055206:intron 35.0%
! CAAGAACTTAGCATTGGAAT+GGG - chr7.4:40758722-40758741 MS.gene055206:intron 35.0%
! GCAAAGGATTTTGTGTAACA+GGG - chr7.4:40757421-40757440 MS.gene055206:intron 35.0%
! TAATTAACTAGCTTAGTGGC+CGG - chr7.4:40757772-40757791 MS.gene055206:intron 35.0%
! TTAAAAAAGGGTGTGCAAGT+TGG + chr7.4:40758489-40758508 None:intergenic 35.0%
!! ACCTTTAAGGGTTGATTTTC+CGG + chr7.4:40757794-40757813 None:intergenic 35.0%
!!! CACCCTTTTTTAAAAGCATC+TGG - chr7.4:40758496-40758515 MS.gene055206:intron 35.0%
ATAGAAATTAGATGCCGGAG+TGG - chr7.4:40759538-40759557 MS.gene055206:intron 40.0%
ATAGTGTCTCAAACACCTAG+TGG - chr7.4:40759578-40759597 MS.gene055206:intron 40.0%
ATGCACCAAGAACTTAGCAT+TGG - chr7.4:40758716-40758735 MS.gene055206:intron 40.0%
CAAATTATAGCAGCAGATGG+AGG - chr7.4:40759677-40759696 MS.gene055206:CDS 40.0%
CAAGTGTTCACGTATTGAGA+AGG - chr7.4:40759283-40759302 MS.gene055206:intron 40.0%
CATAGCTGTCTCCAAAAGTA+AGG + chr7.4:40758796-40758815 None:intergenic 40.0%
CCATTCCAATGCTAAGTTCT+TGG + chr7.4:40758724-40758743 None:intergenic 40.0%
CTTCTCAATACGTGAACACT+TGG + chr7.4:40759285-40759304 None:intergenic 40.0%
GCAGCTTCAAAGATCAAAGA+TGG - chr7.4:40757145-40757164 MS.gene055206:CDS 40.0%
GCTGCGTAAACAGAAACAAA+AGG + chr7.4:40758571-40758590 None:intergenic 40.0%
GGACAAATTATAGCAGCAGA+TGG - chr7.4:40759674-40759693 MS.gene055206:CDS 40.0%
GTGGAAGAGTTAGCAGAATT+TGG - chr7.4:40757333-40757352 MS.gene055206:intron 40.0%
TAACAAACATGCTCTTGGTG+TGG - chr7.4:40759248-40759267 MS.gene055206:intron 40.0%
TCCAAAAGTAAGGTCATCAC+AGG + chr7.4:40758786-40758805 None:intergenic 40.0%
! ACCTGTGATGACCTTACTTT+TGG - chr7.4:40758782-40758801 MS.gene055206:intron 40.0%
! CAAGTTGCAACTTTTTGACG+GGG + chr7.4:40758236-40758255 None:intergenic 40.0%
! CCAAGAACTTAGCATTGGAA+TGG - chr7.4:40758721-40758740 MS.gene055206:intron 40.0%
! CGCAAGTTGCAACTTTTTGA+CGG + chr7.4:40758238-40758257 None:intergenic 40.0%
! CTTGATAGCATTATCCACTC+CGG + chr7.4:40759555-40759574 None:intergenic 40.0%
! GCAAGTTGCAACTTTTTGAC+GGG + chr7.4:40758237-40758256 None:intergenic 40.0%
! GGCAAAGGATTTTGTGTAAC+AGG - chr7.4:40757420-40757439 MS.gene055206:intron 40.0%
!! AGCTTTGAGACCTGAAATTG+AGG + chr7.4:40758545-40758564 None:intergenic 40.0%
!! CTTACTTTTGGAGACAGCTA+TGG - chr7.4:40758794-40758813 MS.gene055206:intron 40.0%
!! GTTCTTGGTGCATTGATTCA+TGG + chr7.4:40758709-40758728 None:intergenic 40.0%
CCAGCTTCTTCACACATAAC+CGG - chr7.4:40759653-40759672 MS.gene055206:CDS 45.0%
CGGAGTGGATAATGCTATCA+AGG - chr7.4:40759553-40759572 MS.gene055206:intron 45.0%
GCCGGAAAATCAACCCTTAA+AGG - chr7.4:40757790-40757809 MS.gene055206:intron 45.0%
TCTGTTTACGCAGCCTCTAA+AGG - chr7.4:40758577-40758596 MS.gene055206:intron 45.0%
TGTCTCAAACACCTAGTGGT+CGG - chr7.4:40759582-40759601 MS.gene055206:intron 45.0%
! ATGACAGCTCTAGTAACTGG+TGG - chr7.4:40757180-40757199 MS.gene055206:CDS 45.0%
! CTTAGCATTGGAATGGGCAA+AGG - chr7.4:40758728-40758747 MS.gene055206:intron 45.0%
! GGAATGACAGCTCTAGTAAC+TGG - chr7.4:40757177-40757196 MS.gene055206:CDS 45.0%
!!! AACTAATTTTTTTATATTTT+TGG - chr7.4:40758142-40758161 MS.gene055206:intron 5.0%
AGAGAACTGACCCTATGCCT+CGG + chr7.4:40757209-40757228 None:intergenic 50.0%
AGTAAGGTCATCACAGGTCC+AGG + chr7.4:40758780-40758799 None:intergenic 50.0%
CAAACACCTAGTGGTCGGAT+TGG - chr7.4:40759587-40759606 MS.gene055206:intron 50.0%
CCGGTTATGTGTGAAGAAGC+TGG + chr7.4:40759656-40759675 None:intergenic 50.0%
! ACATGCTCTTGGTGTGGCAA+AGG - chr7.4:40759254-40759273 MS.gene055206:intron 50.0%
! GGTGTGCAAGTTGGCACAAA+TGG + chr7.4:40758480-40758499 None:intergenic 50.0%
! TTGCAACTTTTTGACGGGGC+TGG + chr7.4:40758232-40758251 None:intergenic 50.0%
!!! ACAAAGCAGGGGCTAGCTTT+TGG - chr7.4:40757620-40757639 MS.gene055206:intron 50.0%
CAGACGGACGCTAAGTGAAG+AGG + chr7.4:40758858-40758877 None:intergenic 55.0%
CGTGCTAATGTTGTGGCTCC+TGG - chr7.4:40758759-40758778 MS.gene055206:intron 55.0%
CTAGTAACTGGTGGAACCCG+AGG - chr7.4:40757189-40757208 MS.gene055206:CDS 55.0%
GAGAACTGACCCTATGCCTC+GGG + chr7.4:40757208-40757227 None:intergenic 55.0%
GGTTCTCCAATCCGACCACT+AGG + chr7.4:40759596-40759615 None:intergenic 55.0%
ACTGGTGGAACCCGAGGCAT+AGG - chr7.4:40757195-40757214 MS.gene055206:CDS 60.0%
CTGGTGGAACCCGAGGCATA+GGG - chr7.4:40757196-40757215 MS.gene055206:CDS 60.0%
!!! TTTTGACGGGGCTGGCCCAA+TGG + chr7.4:40758224-40758243 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40757126 40759712 40757126 ID=MS.gene055206
chr7.4 mRNA 40757126 40759712 40757126 ID=MS.gene055206.t1;Parent=MS.gene055206
chr7.4 exon 40759621 40759712 40759621 ID=MS.gene055206.t1.exon1;Parent=MS.gene055206.t1
chr7.4 CDS 40759621 40759712 40759621 ID=cds.MS.gene055206.t1;Parent=MS.gene055206.t1
chr7.4 exon 40759308 40759515 40759308 ID=MS.gene055206.t1.exon2;Parent=MS.gene055206.t1
chr7.4 CDS 40759308 40759515 40759308 ID=cds.MS.gene055206.t1;Parent=MS.gene055206.t1
chr7.4 exon 40758240 40758456 40758240 ID=MS.gene055206.t1.exon3;Parent=MS.gene055206.t1
chr7.4 CDS 40758240 40758456 40758240 ID=cds.MS.gene055206.t1;Parent=MS.gene055206.t1
chr7.4 exon 40758023 40758135 40758023 ID=MS.gene055206.t1.exon4;Parent=MS.gene055206.t1
chr7.4 CDS 40758023 40758135 40758023 ID=cds.MS.gene055206.t1;Parent=MS.gene055206.t1
chr7.4 exon 40757126 40757296 40757126 ID=MS.gene055206.t1.exon5;Parent=MS.gene055206.t1
chr7.4 CDS 40757126 40757296 40757126 ID=cds.MS.gene055206.t1;Parent=MS.gene055206.t1
Gene Sequence

>MS.gene055206

ATGGCAGAAACAAAGTTGAGCAGCTTCAAAGATCAAAGATGGTCACTAAAAGGAATGACAGCTCTAGTAACTGGTGGAACCCGAGGCATAGGGTCAGTTCTCTAATGCAAATTTCTTATCTCTAATGAGAACATGTAATTTTAATTCATCATGTTAATTTTGTTTTGTTTTGTTTCTTTTTTTGAATAATCAATCAGGTATGCAATTGTGGAAGAGTTAGCAGAATTTGGAGCAAGTGTGCATATATGTTCACGAAATCAAGAAGATATTAACAAATGTTTGAAAGAATGGAAAGGCAAAGGATTTTGTGTAACAGGGTCAACTTGTGATTTATTATTGCGTGACCAACGTGAAAAATTGATGGAAACAGTAGCTTCAATCTTTCAAGGAAAACTCAATATTCTAGTAAGATTTAATCATTCAAATTTGATTTTGGAAACAAATTAAAATAAATTCATTTTCAGTTTTGTAGTCAAGAGATTTATACAATCAAAACAAAGCAGGGGCTAGCTTTTGGATGTCTAAGATGAAGTTTAAATTTTTAAAAACCCACAATGGTATTTTATTAAAGTTTTTTTTGAAAGGTTTTTTTATTAAAGTTATTAAGTTTCGGTTTAAATTATTTGTAGCCTTTTTTTTCTTTGTCTAATTAACTAGCTTAGTGGCCGGAAAATCAACCCTTAAAGGTGAATAAACGGGAAGTCGTGAGTTCGAACTCTGAACCAATGCATATTACAATGTATTGTCTATTGTCTTTATCGATTGAGTTATGCTTACATATTATTTGTGACGTTTTAAATCGCAGAATTATTTTTTTAAGTATCATGTTTGTTTAATATTTCTTTTCCATTTTATAATAAAGTCAACTGATTTAGTTTTGTTGAGACATGGCTTCTTATCAAGTGCCCTAAGAGCACTTGTTAGCATTTCTTTTAAATAAATTTTTATTAACTTTTACATTTTGAAAACAGTAGAATATGAATTATTCCTACTATCCTCTAAAAAAAAATCTTGCTAACTAATTTTTTTATATTTTTGGTGGTCTAAAGCAAATGTAACAAAAAAAACATATTTTTGGTGCTCTTTTTAATTGTACCATTGGGCCAGCCCCGTCAAAAAGTTGCAACTTGCGTTAACAAAATTCTATGTTCAAGCTACAAATTGCAACTCAAAAGAAAGACAAGCAAATAAATTTTTTAGATTTTTTTAATTGACTATGTATGTTTATTTGATGATTGAATTTCTCAAACTGTTAGGTAAACAATGCTGGGATATTTGCTCCTAAACCCATCTTAGATAATACTGATGAAGATATAACAACTACAATTGGTACCAATTTTGTGTCTGGTTACCATTTGTGCCAACTTGCACACCCTTTTTTAAAAGCATCTGGATATGGAAGCATAGTATACATATCCTCAATTTCAGGTCTCAAAGCTTTGCCTTTTGTTTCTGTTTACGCAGCCTCTAAAGGTAATTTTAATTATATATCTTCATATTATACCCTTTAACTTGGAACTTTGCAGAAGATAATTAGTATTCTCAATATGATAAAATTGCTATTTCTATCTATGTAGGAGCCATGAATCAATGCACCAAGAACTTAGCATTGGAATGGGCAAAGGATAATATTCGTGCTAATGTTGTGGCTCCTGGACCTGTGATGACCTTACTTTTGGAGACAGCTATGGTATGATTTATTCATGATAGCAATTTACTTAAATTATTGCCTCTTCACTTAGCGTCCGTCTGTTATAGCTTATTTAAGAAAAGAAATTCCTTAAAAAAAATCACTTTTAAGAGTATTGCATTTGTTTGTTACAGTTTAAAAAAAAAAAAATCAAAAAACAACTTTAAATGAGAAGTTGTTAAGAGTAGTTTCTCAAAAAATATTTTTTTGTAGAGGAGAGAGAAAATATGATTCAAAAGATTGAACTAATTTTGCAACAAAAAATCTTTTTTTATATAGTTGTATCCAAAAAAACTAAATTACCTATTTTAAAAAATAATTTTTATTACGTTAAACAAACGCAAAAGGAAAAATAGATTCTGGTTTTTCATAAAAATCTCCAAACATAATTTCTAAATTATGTTATGTGAAAATCACTTTTACTTTAATATGTAACAAACATGCTCTTGGTGTGGCAAAGGACAAACCAAGTGTTCACGTATTGAGAAGGGAGTAGATAATAATATCACAATATTGAGAATAAAATAAAATTAAATAAATATATGTATATAAATAAACAAAATATTTCTCTTAAAAAAATTAGTCGGGTCATAATTTGCTTATGTTAGTATTGTTTTATGCTTTTGCTAAATTGCCATGCCTAATTTGGCCTAATTTGAACTTTTGTATCCTTTTATGCTTTAGCTATAATGCTTATAATCACTATTATAATTTCTCTTTTTATAGAAATTAGATGCCGGAGTGGATAATGCTATCAAGGATATAGTGTCTCAAACACCTAGTGGTCGGATTGGAGAACCTAAAGATATATCAGCATTGGTTGCTTTTCTTTGTCTTCCAGCTTCTTCACACATAACCGGACAAATTATAGCAGCAGATGGAGGCTTCACTATTTAA

Protein sequence

>MS.gene055206.t1

MAETKLSSFKDQRWSLKGMTALVTGGTRGIGYAIVEELAEFGASVHICSRNQEDINKCLKEWKGKGFCVTGSTCDLLLRDQREKLMETVASIFQGKLNILVNNAGIFAPKPILDNTDEDITTTIGTNFVSGYHLCQLAHPFLKASGYGSIVYISSISGLKALPFVSVYAASKGAMNQCTKNLALEWAKDNIRANVVAPGPVMTLLLETAMKLDAGVDNAIKDIVSQTPSGRIGEPKDISALVAFLCLPASSHITGQIIAADGGFTI