Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064188.t1 | AFK39877.1 | 83.6 | 458 | 67 | 4 | 1 | 455 | 21 | 473 | 9.00E-170 | 606.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064188.t1 | G7ZX34 | 83.6 | 458 | 67 | 4 | 1 | 455 | 21 | 473 | 6.5e-170 | 606.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057754 | MS.gene064188 | 0.806194 | 9.26E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064188.t1 | MTR_4g046037 | 89.371 | 461 | 35 | 5 | 1 | 455 | 21 | 473 | 0.0 | 729 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 89 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACCATCTTCATGCTCTTC+TGG | 0.168034 | 4.2:+56185062 | None:intergenic |
| TGTTTCCATCTTTGCTTTCA+TGG | 0.187545 | 4.2:+56185141 | None:intergenic |
| AAAGATCAAAATTCCAAATA+TGG | 0.211463 | 4.2:-56185623 | MS.gene064188:CDS |
| TGATATTATTGATGACATTT+GGG | 0.308954 | 4.2:-56187247 | None:intergenic |
| CATTGTCAAGAATAAGTTAA+TGG | 0.309843 | 4.2:-56185294 | MS.gene064188:CDS |
| TTGATATTATTGATGACATT+TGG | 0.314895 | 4.2:-56187248 | None:intergenic |
| GTTCTTCCTACTCAACTCTT+TGG | 0.315842 | 4.2:+56185991 | None:intergenic |
| CAGCAAAGAGGGAGCAATTT+GGG | 0.332710 | 4.2:-56185812 | MS.gene064188:CDS |
| CTCTTCCTCATGGAACATAT+TGG | 0.336893 | 4.2:+56184974 | None:intergenic |
| GCAGCAAAGAGGGAGCAATT+TGG | 0.344042 | 4.2:-56185813 | MS.gene064188:CDS |
| TTGGTGTCATGGTGCTTCAT+AGG | 0.354878 | 4.2:-56187214 | MS.gene064188:CDS |
| AAGATCAAAATTCCAAATAT+GGG | 0.383249 | 4.2:-56185622 | MS.gene064188:CDS |
| GGCTGCACTGCTTGGTGTCA+TGG | 0.388184 | 4.2:-56187225 | MS.gene064188:CDS |
| CACCATCTTCATGCTCTTCT+GGG | 0.395094 | 4.2:+56185063 | None:intergenic |
| CCAGTGGCACCATCATCTGC+AGG | 0.397681 | 4.2:+56185491 | None:intergenic |
| ATGGTGCTGTCCAACAAAAC+TGG | 0.401504 | 4.2:-56185046 | MS.gene064188:CDS |
| AATCACCAGGAGACAGATAA+TGG | 0.405689 | 4.2:-56185098 | MS.gene064188:CDS |
| TGAGGAAGAGCAGCAAGAAT+TGG | 0.406682 | 4.2:-56184961 | MS.gene064188:CDS |
| TGCCACAATCTGATCAAATA+TGG | 0.411282 | 4.2:+56185688 | None:intergenic |
| ATTCTTGCTGCTCTTCCTCA+TGG | 0.415016 | 4.2:+56184964 | None:intergenic |
| GCAGCAAGAATTGGAAGTTT+CGG | 0.420805 | 4.2:-56184952 | MS.gene064188:CDS |
| CAAGAGAAAGATACAATTGA+TGG | 0.421793 | 4.2:-56184918 | MS.gene064188:CDS |
| TTCAAAGCAAAACAATTGTC+TGG | 0.431511 | 4.2:-56185371 | MS.gene064188:CDS |
| TGAAAATCATGGAGAGGTAA+AGG | 0.432891 | 4.2:-56185255 | MS.gene064188:CDS |
| ACATTTGGGGCTGCACTGCT+TGG | 0.444645 | 4.2:-56187233 | MS.gene064188:CDS |
| TGATTCCATTATCTGTCTCC+TGG | 0.456585 | 4.2:+56185093 | None:intergenic |
| TTCATCTTCAAATTCCAGTT+GGG | 0.458451 | 4.2:+56184848 | None:intergenic |
| AAGAGAGAATCTTAAGAAAA+CGG | 0.464640 | 4.2:-56185762 | MS.gene064188:CDS |
| GATCTTTCTGTTTAACAAGA+AGG | 0.465332 | 4.2:+56187165 | None:intergenic |
| ATTCTTCAGCGAATCCCAAC+TGG | 0.469388 | 4.2:-56184862 | MS.gene064188:CDS |
| GATGATCATCGATGCTTATC+CGG | 0.482907 | 4.2:+56185714 | None:intergenic |
| GAAAACCATGAAAGCAAAGA+TGG | 0.483277 | 4.2:-56185146 | MS.gene064188:CDS |
| TGACCTGCAAAAGAACTTGA+AGG | 0.485328 | 4.2:+56187129 | None:intergenic |
| AAATGAGAAGGAAGAGTACA+AGG | 0.488562 | 4.2:-56184826 | MS.gene064188:CDS |
| AAAGAGACTCTGATGAGAAA+AGG | 0.496759 | 4.2:-56185220 | MS.gene064188:CDS |
| CTGTCCAACAAAACTGGAGC+AGG | 0.505465 | 4.2:-56185040 | MS.gene064188:CDS |
| AACAATTGTCTGGCGCGAAG+AGG | 0.507928 | 4.2:-56185361 | MS.gene064188:CDS |
| TTTCATCTTCAAATTCCAGT+TGG | 0.510004 | 4.2:+56184847 | None:intergenic |
| GAAAACGGAAGCAGATATAG+AGG | 0.510276 | 4.2:-56185747 | MS.gene064188:CDS |
| CACCCTCAGTAATCAAAAGA+TGG | 0.514003 | 4.2:-56185945 | MS.gene064188:CDS |
| AAGAAGTTGAAGCTAAAGTC+GGG | 0.514900 | 4.2:-56185466 | MS.gene064188:CDS |
| AAAGACAACCCTGCAGATGA+TGG | 0.522825 | 4.2:-56185500 | MS.gene064188:CDS |
| CCTGCAGATGATGGTGCCAC+TGG | 0.535156 | 4.2:-56185491 | MS.gene064188:CDS |
| CTCATCTTTAAGTGAACTCA+TGG | 0.537848 | 4.2:+56185889 | None:intergenic |
| CAAGGAAGAAATAGATGAGT+CGG | 0.541389 | 4.2:-56184808 | MS.gene064188:CDS |
| TGATCAGATTGTGGCAGCAA+AGG | 0.543418 | 4.2:-56185681 | MS.gene064188:CDS |
| AGATCAAAATTCCAAATATG+GGG | 0.545641 | 4.2:-56185621 | MS.gene064188:CDS |
| CACCCAGAAGAGCATGAAGA+TGG | 0.546055 | 4.2:-56185065 | MS.gene064188:CDS |
| AACCATATTTGATCAGATTG+TGG | 0.546855 | 4.2:-56185690 | MS.gene064188:CDS |
| ACAATTGTCTGGCGCGAAGA+GGG | 0.547037 | 4.2:-56185360 | MS.gene064188:CDS |
| AAATTCACCGAGTTCAAAGA+TGG | 0.548295 | 4.2:-56185581 | MS.gene064188:CDS |
| TCAAAGAGAAACTGAATCGC+AGG | 0.551631 | 4.2:-56185186 | MS.gene064188:CDS |
| ACAATCTGATCAAATATGGT+TGG | 0.567670 | 4.2:+56185692 | None:intergenic |
| TTAGAATGATGCAGCAAAGA+GGG | 0.569674 | 4.2:-56185823 | MS.gene064188:CDS |
| CTCGAGGTGAACACAGATGG+TGG | 0.572424 | 4.2:-56185404 | MS.gene064188:CDS |
| ATTAAGACGAATGAGGAGCT+AGG | 0.573973 | 4.2:-56185530 | MS.gene064188:CDS |
| AGAAGAAATTAAGACGAATG+AGG | 0.576711 | 4.2:-56185537 | MS.gene064188:CDS |
| CAGTGGCACCATCATCTGCA+GGG | 0.588604 | 4.2:+56185492 | None:intergenic |
| AAACTCGAGGTGAACACAGA+TGG | 0.588964 | 4.2:-56185407 | MS.gene064188:CDS |
| TCTGGCGCGAAGAGGGAACA+TGG | 0.590464 | 4.2:-56185353 | MS.gene064188:CDS |
| AAAGAAGTTGAAGCTAAAGT+CGG | 0.590893 | 4.2:-56185467 | MS.gene064188:CDS |
| ATTTGAAGATGAAAATGAGA+AGG | 0.592817 | 4.2:-56184838 | MS.gene064188:CDS |
| CACCGAGTTCAAAGATGGAG+AGG | 0.598282 | 4.2:-56185576 | MS.gene064188:CDS |
| ATCGCACCAAAGAGTTGAGT+AGG | 0.598816 | 4.2:-56185997 | MS.gene064188:CDS |
| AATAAGTTAATGGAGAGCAA+TGG | 0.600982 | 4.2:-56185284 | MS.gene064188:CDS |
| GGTCATTTAAGTAGAACAGA+GGG | 0.601889 | 4.2:-56185332 | MS.gene064188:CDS |
| AACCTCTCCATCTTTGAACT+CGG | 0.606761 | 4.2:+56185574 | None:intergenic |
| AGTGGATAAGACTAATCACC+AGG | 0.615825 | 4.2:-56185111 | MS.gene064188:CDS |
| ATACTGCTTCTCTGCGTATG+CGG | 0.621168 | 4.2:+56185850 | None:intergenic |
| GATGAGTCGGAGTTTCAGCA+TGG | 0.623302 | 4.2:-56184795 | MS.gene064188:CDS |
| TCCAACAAAACTGGAGCAGG+AGG | 0.630041 | 4.2:-56185037 | MS.gene064188:CDS |
| CTTAGAATGATGCAGCAAAG+AGG | 0.631370 | 4.2:-56185824 | MS.gene064188:CDS |
| GATATTATTGATGACATTTG+GGG | 0.631570 | 4.2:-56187246 | None:intergenic |
| GACCTGCAAAAGAACTTGAA+GGG | 0.634398 | 4.2:+56187130 | None:intergenic |
| AGAGGGAGCAATTTGGGACA+AGG | 0.634904 | 4.2:-56185806 | MS.gene064188:CDS |
| AGATGGAAACAACACAGCAG+TGG | 0.649981 | 4.2:-56185129 | MS.gene064188:CDS |
| GATCAAAATTCCAAATATGG+GGG | 0.650663 | 4.2:-56185620 | MS.gene064188:CDS |
| TGGTGAAGACGATGGTGTGG+AGG | 0.660055 | 4.2:-56184898 | MS.gene064188:CDS |
| TGATGGTGAAGACGATGGTG+TGG | 0.666883 | 4.2:-56184901 | MS.gene064188:CDS |
| AAAATCCAATATGTTCCATG+AGG | 0.669289 | 4.2:-56184979 | MS.gene064188:CDS |
| AGAGCATCAAAGAAAACTCG+AGG | 0.672880 | 4.2:-56185420 | MS.gene064188:CDS |
| GGGAGCAATTTGGGACAAGG+AGG | 0.676828 | 4.2:-56185803 | MS.gene064188:CDS |
| TGGTCATTTAAGTAGAACAG+AGG | 0.687815 | 4.2:-56185333 | MS.gene064188:CDS |
| TCATTTAAGTAGAACAGAGG+GGG | 0.688682 | 4.2:-56185330 | MS.gene064188:CDS |
| AGAAGTTGAAGCTAAAGTCG+GGG | 0.704983 | 4.2:-56185465 | MS.gene064188:CDS |
| ATATAGAGGACTTAAAACAC+CGG | 0.710492 | 4.2:-56185733 | MS.gene064188:CDS |
| AGTTGAAGCTAAAGTCGGGG+AGG | 0.721898 | 4.2:-56185462 | MS.gene064188:CDS |
| ACAATTGATGGTGAAGACGA+TGG | 0.732319 | 4.2:-56184906 | MS.gene064188:CDS |
| GTCATTTAAGTAGAACAGAG+GGG | 0.744568 | 4.2:-56185331 | MS.gene064188:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GATAAAAAAACAAAATATTT+AGG | + | chr4.2:56185987-56186006 | None:intergenic | 10.0% |
| !!! | TTTTTCAATTTGATATATTT+AGG | + | chr4.2:56185013-56185032 | None:intergenic | 10.0% |
| !! | AAATATTTAGGTAATTATAG+AGG | + | chr4.2:56185975-56185994 | None:intergenic | 15.0% |
| !! | ATTGAAATATCAAATTATTC+TGG | - | chr4.2:56185753-56185772 | MS.gene064188:CDS | 15.0% |
| !! | TTGAAATATCAAATTATTCT+GGG | - | chr4.2:56185754-56185773 | MS.gene064188:CDS | 15.0% |
| !!! | TATTTTCTGTTGTAATTTTA+TGG | - | chr4.2:56185325-56185344 | MS.gene064188:CDS | 15.0% |
| !!! | TGTTTTTTTTTGTGTTAAAA+TGG | + | chr4.2:56184943-56184962 | None:intergenic | 15.0% |
| !! | AAAGATCAAAATTCCAAATA+TGG | - | chr4.2:56186401-56186420 | MS.gene064188:intron | 20.0% |
| !! | AACAAAATACAATTAGAGAA+TGG | - | chr4.2:56185395-56185414 | MS.gene064188:CDS | 20.0% |
| !! | AAGATCAAAATTCCAAATAT+GGG | - | chr4.2:56186402-56186421 | MS.gene064188:intron | 20.0% |
| !! | ATTTGATATTTCAATTCAAG+TGG | + | chr4.2:56185748-56185767 | None:intergenic | 20.0% |
| !! | CATTTAGTGACTAATTAAAA+TGG | + | chr4.2:56184967-56184986 | None:intergenic | 20.0% |
| !!! | AATGGAATTTTTGAAAATCA+TGG | - | chr4.2:56186758-56186777 | MS.gene064188:intron | 20.0% |
| !!! | ATTCTCTAATTGTATTTTGT+TGG | + | chr4.2:56185396-56185415 | None:intergenic | 20.0% |
| !!! | TATTTCACTCTATTTCTTTA+GGG | - | chr4.2:56185857-56185876 | MS.gene064188:CDS | 20.0% |
| !!! | TTATTTCACTCTATTTCTTT+AGG | - | chr4.2:56185856-56185875 | MS.gene064188:CDS | 20.0% |
| !!! | TTTTTTATCAATTCTGTAGA+AGG | - | chr4.2:56185998-56186017 | MS.gene064188:CDS | 20.0% |
| ! | AAGAGAGAATCTTAAGAAAA+CGG | - | chr4.2:56186262-56186281 | MS.gene064188:intron | 25.0% |
| ! | AGAAAAACAGAATCATATGA+AGG | + | chr4.2:56185487-56185506 | None:intergenic | 25.0% |
| ! | AGATCAAAATTCCAAATATG+GGG | - | chr4.2:56186403-56186422 | MS.gene064188:intron | 25.0% |
| ! | ATCATCAGAATTGAATTGAA+AGG | + | chr4.2:56185915-56185934 | None:intergenic | 25.0% |
| ! | ATTTGAAGATGAAAATGAGA+AGG | - | chr4.2:56187186-56187205 | MS.gene064188:CDS | 25.0% |
| ! | CATTGTCAAGAATAAGTTAA+TGG | - | chr4.2:56186730-56186749 | MS.gene064188:intron | 25.0% |
| ! | TAGAAAAAGAATTGCTTCAT+TGG | + | chr4.2:56185659-56185678 | None:intergenic | 25.0% |
| ! | TAGTCACTAAATGTGTAAAA+CGG | - | chr4.2:56184974-56184993 | MS.gene064188:CDS | 25.0% |
| !! | AATTCAATTCTGATGATGTT+TGG | - | chr4.2:56185918-56185937 | MS.gene064188:CDS | 25.0% |
| !! | TTATTGGTCAGTTAATTTGA+GGG | - | chr4.2:56185632-56185651 | MS.gene064188:CDS | 25.0% |
| !! | TTTATTGGTCAGTTAATTTG+AGG | - | chr4.2:56185631-56185650 | MS.gene064188:CDS | 25.0% |
| !!! | AATTTTTGAAAATCATGGAG+AGG | - | chr4.2:56186763-56186782 | MS.gene064188:intron | 25.0% |
| AAAATCCAATATGTTCCATG+AGG | - | chr4.2:56187045-56187064 | MS.gene064188:intron | 30.0% | |
| AAAGAAGTTGAAGCTAAAGT+CGG | - | chr4.2:56186557-56186576 | MS.gene064188:intron | 30.0% | |
| AACCATATTTGATCAGATTG+TGG | - | chr4.2:56186334-56186353 | MS.gene064188:intron | 30.0% | |
| AATAAGTTAATGGAGAGCAA+TGG | - | chr4.2:56186740-56186759 | MS.gene064188:intron | 30.0% | |
| ACAATCTGATCAAATATGGT+TGG | + | chr4.2:56186335-56186354 | None:intergenic | 30.0% | |
| ACCAATCAAATTAGAAAGTG+TGG | - | chr4.2:56185714-56185733 | MS.gene064188:CDS | 30.0% | |
| AGAAGAAATTAAGACGAATG+AGG | - | chr4.2:56186487-56186506 | MS.gene064188:intron | 30.0% | |
| AGACTAGTAGGATACTTTAT+TGG | - | chr4.2:56185616-56185635 | MS.gene064188:CDS | 30.0% | |
| ATATAGAGGACTTAAAACAC+CGG | - | chr4.2:56186291-56186310 | MS.gene064188:intron | 30.0% | |
| ATTATTCCTTAGTCCTTTGA+TGG | - | chr4.2:56185685-56185704 | MS.gene064188:CDS | 30.0% | |
| CAAGAGAAAGATACAATTGA+TGG | - | chr4.2:56187106-56187125 | MS.gene064188:intron | 30.0% | |
| GATCAAAATTCCAAATATGG+GGG | - | chr4.2:56186404-56186423 | MS.gene064188:intron | 30.0% | |
| GATCTTTCTGTTTAACAAGA+AGG | + | chr4.2:56184862-56184881 | None:intergenic | 30.0% | |
| GGAATGGAACTGAATTAAAT+GGG | - | chr4.2:56185788-56185807 | MS.gene064188:CDS | 30.0% | |
| TGGAATGGAACTGAATTAAA+TGG | - | chr4.2:56185787-56185806 | MS.gene064188:CDS | 30.0% | |
| TTATTCTGGGTATGTTTGAT+TGG | - | chr4.2:56185767-56185786 | MS.gene064188:CDS | 30.0% | |
| TTCAAAGCAAAACAATTGTC+TGG | - | chr4.2:56186653-56186672 | MS.gene064188:intron | 30.0% | |
| TTCATCTTCAAATTCCAGTT+GGG | + | chr4.2:56187179-56187198 | None:intergenic | 30.0% | |
| TTTCATCTTCAAATTCCAGT+TGG | + | chr4.2:56187180-56187199 | None:intergenic | 30.0% | |
| ! | CAATCAAATTAGAAAGTGTG+GGG | - | chr4.2:56185716-56185735 | MS.gene064188:CDS | 30.0% |
| ! | CCAATCAAATTAGAAAGTGT+GGG | - | chr4.2:56185715-56185734 | MS.gene064188:CDS | 30.0% |
| !! | ATTGTATTTTGTTGGTCTCT+TGG | + | chr4.2:56185388-56185407 | None:intergenic | 30.0% |
| AAAGAGACTCTGATGAGAAA+AGG | - | chr4.2:56186804-56186823 | MS.gene064188:intron | 35.0% | |
| AAATTCACCGAGTTCAAAGA+TGG | - | chr4.2:56186443-56186462 | MS.gene064188:intron | 35.0% | |
| AAGAAGTTGAAGCTAAAGTC+GGG | - | chr4.2:56186558-56186577 | MS.gene064188:intron | 35.0% | |
| CAAGGAAGAAATAGATGAGT+CGG | - | chr4.2:56187216-56187235 | MS.gene064188:CDS | 35.0% | |
| CCCACACTTTCTAATTTGAT+TGG | + | chr4.2:56185718-56185737 | None:intergenic | 35.0% | |
| CGGGGTATGATAAACAATAT+TGG | - | chr4.2:56185156-56185175 | MS.gene064188:CDS | 35.0% | |
| CTCATCTTTAAGTGAACTCA+TGG | + | chr4.2:56186138-56186157 | None:intergenic | 35.0% | |
| GAAAACCATGAAAGCAAAGA+TGG | - | chr4.2:56186878-56186897 | MS.gene064188:intron | 35.0% | |
| GATTGGTGTATAACCATCAA+AGG | + | chr4.2:56185701-56185720 | None:intergenic | 35.0% | |
| GGTCATTTAAGTAGAACAGA+GGG | - | chr4.2:56186692-56186711 | MS.gene064188:intron | 35.0% | |
| GTATAACCATCAAAGGACTA+AGG | + | chr4.2:56185694-56185713 | None:intergenic | 35.0% | |
| GTCAATTTGTATCTGCAAGT+GGG | - | chr4.2:56185049-56185068 | MS.gene064188:CDS | 35.0% | |
| GTCATTTAAGTAGAACAGAG+GGG | - | chr4.2:56186693-56186712 | MS.gene064188:intron | 35.0% | |
| TCATTTAAGTAGAACAGAGG+GGG | - | chr4.2:56186694-56186713 | MS.gene064188:intron | 35.0% | |
| TGAAAATCATGGAGAGGTAA+AGG | - | chr4.2:56186769-56186788 | MS.gene064188:intron | 35.0% | |
| TGCCACAATCTGATCAAATA+TGG | + | chr4.2:56186339-56186358 | None:intergenic | 35.0% | |
| TGGTCATTTAAGTAGAACAG+AGG | - | chr4.2:56186691-56186710 | MS.gene064188:intron | 35.0% | |
| TGTCAATTTGTATCTGCAAG+TGG | - | chr4.2:56185048-56185067 | MS.gene064188:CDS | 35.0% | |
| TGTTTCCATCTTTGCTTTCA+TGG | + | chr4.2:56186886-56186905 | None:intergenic | 35.0% | |
| TTAGAATGATGCAGCAAAGA+GGG | - | chr4.2:56186201-56186220 | MS.gene064188:intron | 35.0% | |
| ! | AAATGAGAAGGAAGAGTACA+AGG | - | chr4.2:56187198-56187217 | MS.gene064188:CDS | 35.0% |
| ! | AAATTAGAAAGTGTGGGGAA+GGG | - | chr4.2:56185721-56185740 | MS.gene064188:CDS | 35.0% |
| ! | TCTTTGCTTTCATGGTTTTC+AGG | + | chr4.2:56186878-56186897 | None:intergenic | 35.0% |
| !! | CTCCATCTTTTGATTACTGA+GGG | + | chr4.2:56186084-56186103 | None:intergenic | 35.0% |
| AACAGGAAAAGAGAAGGTAG+TGG | - | chr4.2:56185586-56185605 | MS.gene064188:CDS | 40.0% | |
| AACCTCTCCATCTTTGAACT+CGG | + | chr4.2:56186453-56186472 | None:intergenic | 40.0% | |
| AATCACCAGGAGACAGATAA+TGG | - | chr4.2:56186926-56186945 | MS.gene064188:intron | 40.0% | |
| ACAGGAAAAGAGAAGGTAGT+GGG | - | chr4.2:56185587-56185606 | MS.gene064188:CDS | 40.0% | |
| ACTTTCATCACCCCCATATT+TGG | + | chr4.2:56186417-56186436 | None:intergenic | 40.0% | |
| AGAAGTTGAAGCTAAAGTCG+GGG | - | chr4.2:56186559-56186578 | MS.gene064188:intron | 40.0% | |
| AGTGGATAAGACTAATCACC+AGG | - | chr4.2:56186913-56186932 | MS.gene064188:intron | 40.0% | |
| ATTAAGACGAATGAGGAGCT+AGG | - | chr4.2:56186494-56186513 | MS.gene064188:intron | 40.0% | |
| ATTAAGATCATGTCCCTTGC+AGG | - | chr4.2:56185179-56185198 | MS.gene064188:CDS | 40.0% | |
| ATTTGATCATACCCTGTCAC+GGG | - | chr4.2:56185132-56185151 | MS.gene064188:CDS | 40.0% | |
| CACCCTCAGTAATCAAAAGA+TGG | - | chr4.2:56186079-56186098 | MS.gene064188:intron | 40.0% | |
| CTCTTCCTCATGGAACATAT+TGG | + | chr4.2:56187053-56187072 | None:intergenic | 40.0% | |
| CTGGGTATGTTTGATTGGAA+TGG | - | chr4.2:56185772-56185791 | MS.gene064188:CDS | 40.0% | |
| CTTAGAATGATGCAGCAAAG+AGG | - | chr4.2:56186200-56186219 | MS.gene064188:intron | 40.0% | |
| GAAAACGGAAGCAGATATAG+AGG | - | chr4.2:56186277-56186296 | MS.gene064188:intron | 40.0% | |
| GACCTGCAAAAGAACTTGAA+GGG | + | chr4.2:56184897-56184916 | None:intergenic | 40.0% | |
| GATGATCATCGATGCTTATC+CGG | + | chr4.2:56186313-56186332 | None:intergenic | 40.0% | |
| GATTTGATCATACCCTGTCA+CGG | - | chr4.2:56185131-56185150 | MS.gene064188:CDS | 40.0% | |
| GCAGCAAGAATTGGAAGTTT+CGG | - | chr4.2:56187072-56187091 | MS.gene064188:intron | 40.0% | |
| GTTCTTCCTACTCAACTCTT+TGG | + | chr4.2:56186036-56186055 | None:intergenic | 40.0% | |
| TCAAAGAGAAACTGAATCGC+AGG | - | chr4.2:56186838-56186857 | MS.gene064188:intron | 40.0% | |
| TGACCTGCAAAAGAACTTGA+AGG | + | chr4.2:56184898-56184917 | None:intergenic | 40.0% | |
| TGATTCCATTATCTGTCTCC+TGG | + | chr4.2:56186934-56186953 | None:intergenic | 40.0% | |
| TTAAGATCATGTCCCTTGCA+GGG | - | chr4.2:56185180-56185199 | MS.gene064188:CDS | 40.0% | |
| ! | ACTACCTTCTCTTTTCCTGT+TGG | + | chr4.2:56185587-56185606 | None:intergenic | 40.0% |
| ! | AGAGCATCAAAGAAAACTCG+AGG | - | chr4.2:56186604-56186623 | MS.gene064188:intron | 40.0% |
| ! | AGCTTCAACTTCTTTTCCAG+TGG | + | chr4.2:56186552-56186571 | None:intergenic | 40.0% |
| ! | CAAATTAGAAAGTGTGGGGA+AGG | - | chr4.2:56185720-56185739 | MS.gene064188:CDS | 40.0% |
| ! | TTCCTGTTGGCTGTAAACAA+CGG | + | chr4.2:56185574-56185593 | None:intergenic | 40.0% |
| !! | ACAATTGATGGTGAAGACGA+TGG | - | chr4.2:56187118-56187137 | MS.gene064188:intron | 40.0% |
| !! | GCTCCATCTTTTGATTACTG+AGG | + | chr4.2:56186085-56186104 | None:intergenic | 40.0% |
| !! | GTTTTCAGGCTTCAGCAATT+TGG | + | chr4.2:56186864-56186883 | None:intergenic | 40.0% |
| !! | TACCCTTCAAGTTCTTTTGC+AGG | - | chr4.2:56184892-56184911 | MS.gene064188:CDS | 40.0% |
| AAACTCGAGGTGAACACAGA+TGG | - | chr4.2:56186617-56186636 | MS.gene064188:intron | 45.0% | |
| AAAGACAACCCTGCAGATGA+TGG | - | chr4.2:56186524-56186543 | MS.gene064188:intron | 45.0% | |
| AACCGTTGTTTACAGCCAAC+AGG | - | chr4.2:56185569-56185588 | MS.gene064188:CDS | 45.0% | |
| ACAGCCAACAGGAAAAGAGA+AGG | - | chr4.2:56185580-56185599 | MS.gene064188:CDS | 45.0% | |
| AGATGGAAACAACACAGCAG+TGG | - | chr4.2:56186895-56186914 | MS.gene064188:intron | 45.0% | |
| AGTGGGGACTAAAGACTAGT+AGG | - | chr4.2:56185604-56185623 | MS.gene064188:CDS | 45.0% | |
| ATACTGCTTCTCTGCGTATG+CGG | + | chr4.2:56186177-56186196 | None:intergenic | 45.0% | |
| ATCAAATCCCCACACAACCT+TGG | + | chr4.2:56185119-56185138 | None:intergenic | 45.0% | |
| ATCGCACCAAAGAGTTGAGT+AGG | - | chr4.2:56186027-56186046 | MS.gene064188:intron | 45.0% | |
| ATTCTTCAGCGAATCCCAAC+TGG | - | chr4.2:56187162-56187181 | MS.gene064188:CDS | 45.0% | |
| ATTCTTGCTGCTCTTCCTCA+TGG | + | chr4.2:56187063-56187082 | None:intergenic | 45.0% | |
| CACCATCTTCATGCTCTTCT+GGG | + | chr4.2:56186964-56186983 | None:intergenic | 45.0% | |
| CAGCAAAGAGGGAGCAATTT+GGG | - | chr4.2:56186212-56186231 | MS.gene064188:intron | 45.0% | |
| CAGGAAAAGAGAAGGTAGTG+GGG | - | chr4.2:56185588-56185607 | MS.gene064188:CDS | 45.0% | |
| TCAAATCCCCACACAACCTT+GGG | + | chr4.2:56185118-56185137 | None:intergenic | 45.0% | |
| TGAGGAAGAGCAGCAAGAAT+TGG | - | chr4.2:56187063-56187082 | MS.gene064188:intron | 45.0% | |
| TGATCAGATTGTGGCAGCAA+AGG | - | chr4.2:56186343-56186362 | MS.gene064188:intron | 45.0% | |
| !! | ATGGTGCTGTCCAACAAAAC+TGG | - | chr4.2:56186978-56186997 | MS.gene064188:intron | 45.0% |
| !! | TTGGTGTCATGGTGCTTCAT+AGG | - | chr4.2:56184810-56184829 | MS.gene064188:CDS | 45.0% |
| AAATCCCCACACAACCTTGG+GGG | + | chr4.2:56185116-56185135 | None:intergenic | 50.0% | |
| AACAATTGTCTGGCGCGAAG+AGG | - | chr4.2:56186663-56186682 | MS.gene064188:intron | 50.0% | |
| ACAATTGTCTGGCGCGAAGA+GGG | - | chr4.2:56186664-56186683 | MS.gene064188:intron | 50.0% | |
| ACTTACCATCCCGTCCCAAA+TGG | + | chr4.2:56185092-56185111 | None:intergenic | 50.0% | |
| AGTTGAAGCTAAAGTCGGGG+AGG | - | chr4.2:56186562-56186581 | MS.gene064188:intron | 50.0% | |
| CAAATCCCCACACAACCTTG+GGG | + | chr4.2:56185117-56185136 | None:intergenic | 50.0% | |
| CACCGAGTTCAAAGATGGAG+AGG | - | chr4.2:56186448-56186467 | MS.gene064188:intron | 50.0% | |
| CTCATGACAGAGTCCTTGCA+GGG | + | chr4.2:56185210-56185229 | None:intergenic | 50.0% | |
| CTGTCCAACAAAACTGGAGC+AGG | - | chr4.2:56186984-56187003 | MS.gene064188:intron | 50.0% | |
| GATGAGTCGGAGTTTCAGCA+TGG | - | chr4.2:56187229-56187248 | MS.gene064188:CDS | 50.0% | |
| GCACCATCTTCATGCTCTTC+TGG | + | chr4.2:56186965-56186984 | None:intergenic | 50.0% | |
| GCAGCAAAGAGGGAGCAATT+TGG | - | chr4.2:56186211-56186230 | MS.gene064188:intron | 50.0% | |
| GTATCTGCAAGTGGGATCTC+CGG | - | chr4.2:56185057-56185076 | MS.gene064188:CDS | 50.0% | |
| TCCAACAAAACTGGAGCAGG+AGG | - | chr4.2:56186987-56187006 | MS.gene064188:intron | 50.0% | |
| ! | AGAGGGAGCAATTTGGGACA+AGG | - | chr4.2:56186218-56186237 | MS.gene064188:intron | 50.0% |
| ! | CACCCAGAAGAGCATGAAGA+TGG | - | chr4.2:56186959-56186978 | MS.gene064188:intron | 50.0% |
| ! | TGATGGTGAAGACGATGGTG+TGG | - | chr4.2:56187123-56187142 | MS.gene064188:intron | 50.0% |
| AAGTCCCCCCAAGGTTGTGT+GGG | - | chr4.2:56185108-56185127 | MS.gene064188:CDS | 55.0% | |
| AATCCCCACACAACCTTGGG+GGG | + | chr4.2:56185115-56185134 | None:intergenic | 55.0% | |
| ATCATACCCTGTCACGGGAC+GGG | - | chr4.2:56185137-56185156 | MS.gene064188:CDS | 55.0% | |
| ATGACAGAGTCCTTGCAGGG+CGG | + | chr4.2:56185207-56185226 | None:intergenic | 55.0% | |
| CAGTGGCACCATCATCTGCA+GGG | + | chr4.2:56186535-56186554 | None:intergenic | 55.0% | |
| CTCGAGGTGAACACAGATGG+TGG | - | chr4.2:56186620-56186639 | MS.gene064188:intron | 55.0% | |
| GATCATACCCTGTCACGGGA+CGG | - | chr4.2:56185136-56185155 | MS.gene064188:CDS | 55.0% | |
| GCTCATGACAGAGTCCTTGC+AGG | + | chr4.2:56185211-56185230 | None:intergenic | 55.0% | |
| TAAGTCCCCCCAAGGTTGTG+TGG | - | chr4.2:56185107-56185126 | MS.gene064188:CDS | 55.0% | |
| TGGTGAAGACGATGGTGTGG+AGG | - | chr4.2:56187126-56187145 | MS.gene064188:intron | 55.0% | |
| ! | ACATTTGGGGCTGCACTGCT+TGG | - | chr4.2:56184791-56184810 | MS.gene064188:CDS | 55.0% |
| ! | GGGAGCAATTTGGGACAAGG+AGG | - | chr4.2:56186221-56186240 | MS.gene064188:intron | 55.0% |
| !! | GCCTCCTGCTCCAGTTTTGT+TGG | + | chr4.2:56186991-56187010 | None:intergenic | 55.0% |
| AGTCCCCCCAAGGTTGTGTG+GGG | - | chr4.2:56185109-56185128 | MS.gene064188:CDS | 60.0% | |
| ATCATACCCCGTCCCGTGAC+AGG | + | chr4.2:56185147-56185166 | None:intergenic | 60.0% | |
| CCAGTGGCACCATCATCTGC+AGG | + | chr4.2:56186536-56186555 | None:intergenic | 60.0% | |
| TCATACCCCGTCCCGTGACA+GGG | + | chr4.2:56185146-56185165 | None:intergenic | 60.0% | |
| TCATACCCTGTCACGGGACG+GGG | - | chr4.2:56185138-56185157 | MS.gene064188:CDS | 60.0% | |
| TCCCAAATGGAGCAGTCCGC+CGG | + | chr4.2:56185079-56185098 | None:intergenic | 60.0% | |
| TCTGCAAGTGGGATCTCCGG+CGG | - | chr4.2:56185060-56185079 | MS.gene064188:CDS | 60.0% | |
| TCTGGCGCGAAGAGGGAACA+TGG | - | chr4.2:56186671-56186690 | MS.gene064188:intron | 60.0% | |
| ! | CGGACTGCTCCATTTGGGAC+GGG | - | chr4.2:56185080-56185099 | MS.gene064188:CDS | 60.0% |
| ! | CTGCTCCATTTGGGACGGGA+TGG | - | chr4.2:56185084-56185103 | MS.gene064188:CDS | 60.0% |
| ! | GCGGACTGCTCCATTTGGGA+CGG | - | chr4.2:56185079-56185098 | MS.gene064188:CDS | 60.0% |
| ! | GTAGAACAGAGGGGGTGCGT+TGG | - | chr4.2:56186702-56186721 | MS.gene064188:intron | 60.0% |
| !! | CCTGCAGATGATGGTGCCAC+TGG | - | chr4.2:56186533-56186552 | MS.gene064188:intron | 60.0% |
| !! | GGCTGCACTGCTTGGTGTCA+TGG | - | chr4.2:56184799-56184818 | MS.gene064188:CDS | 60.0% |
| !! | TCCGGCGGACTGCTCCATTT+GGG | - | chr4.2:56185075-56185094 | MS.gene064188:CDS | 60.0% |
| CGGGATGGTAAGTCCCCCCA+AGG | - | chr4.2:56185099-56185118 | MS.gene064188:CDS | 65.0% | |
| TTGCAGGGCGGACCCTGCAA+GGG | + | chr4.2:56185195-56185214 | None:intergenic | 65.0% | |
| !! | CTCCGGCGGACTGCTCCATT+TGG | - | chr4.2:56185074-56185093 | MS.gene064188:CDS | 65.0% |
| CTTGCAGGGCGGACCCTGCA+AGG | + | chr4.2:56185196-56185215 | None:intergenic | 70.0% | |
| CTTGCAGGGTCCGCCCTGCA+AGG | - | chr4.2:56185194-56185213 | MS.gene064188:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 56184788 | 56187258 | 56184788 | ID=MS.gene064188 |
| chr4.2 | mRNA | 56184788 | 56187258 | 56184788 | ID=MS.gene064188.t1;Parent=MS.gene064188 |
| chr4.2 | exon | 56187133 | 56187258 | 56187133 | ID=MS.gene064188.t1.exon1;Parent=MS.gene064188.t1 |
| chr4.2 | CDS | 56187133 | 56187258 | 56187133 | ID=cds.MS.gene064188.t1;Parent=MS.gene064188.t1 |
| chr4.2 | exon | 56184788 | 56186029 | 56184788 | ID=MS.gene064188.t1.exon2;Parent=MS.gene064188.t1 |
| chr4.2 | CDS | 56184788 | 56186029 | 56184788 | ID=cds.MS.gene064188.t1;Parent=MS.gene064188.t1 |
| Gene Sequence |
| Protein sequence |
