AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064381


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064381.t1 MTR_3g053020 97.897 428 9 0 1 428 1 428 0.0 872
MS.gene064381.t1 MTR_5g093390 79.909 438 78 5 1 428 2 439 0.0 708
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064381.t1 AT4G26850 68.694 444 121 7 1 428 1 442 0.0 609
MS.gene064381.t1 AT5G55120 73.858 394 97 2 1 391 2 392 0.0 606

Find 118 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAATTCAGGCATATTATT+TGG 0.159533 3.1:-40153281 MS.gene064381:intron
TTTCACACCACCATTTAATT+TGG 0.178763 3.1:+40153216 None:intergenic
AACTTTAGTGAAATTGAATT+TGG 0.227080 3.1:+40153995 None:intergenic
GGAACGCCCTGTGGCTTTCT+TGG 0.262977 3.1:-40154717 MS.gene064381:CDS
TTGTAACCCAATCGGAAATA+TGG 0.278287 3.1:+40153473 None:intergenic
TTGTTGGTGGTAGGTGATTC+CGG 0.284474 3.1:-40154117 MS.gene064381:intron
AAGAAGATTGCCAAATTAAA+TGG 0.286112 3.1:-40153226 MS.gene064381:CDS
CAGGTTAGTCCTATCGAATA+TGG 0.292372 3.1:-40153596 MS.gene064381:CDS
AGAAGTGCGTGCTGAGCTTC+TGG 0.300654 3.1:-40152543 MS.gene064381:CDS
TTCTTGGACTCGATTATTCT+TGG 0.312041 3.1:-40154701 MS.gene064381:CDS
CGATTGGGTTACAACAGCTT+GGG 0.321121 3.1:-40153464 MS.gene064381:CDS
TATTAATCATCTTCACTTCC+AGG 0.342444 3.1:-40153429 MS.gene064381:intron
GATGAGGATGCTCCTGTTAA+TGG 0.346887 3.1:-40154958 MS.gene064381:CDS
AATTCGCGTGATCGATCCTT+TGG 0.351058 3.1:+40153534 None:intergenic
CATCACAGCTAGCCTCAAAT+TGG 0.351329 3.1:+40153952 None:intergenic
AGAAGATGTTGAGTATTAAG+AGG 0.359887 3.1:-40155011 None:intergenic
CTCAAGAGTTGTTGTATTCA+AGG 0.361415 3.1:-40154919 MS.gene064381:intron
TTAGTAGAAGCCTTCTCAAT+TGG 0.368160 3.1:+40153247 None:intergenic
TCAACATCAATTGGCGCGTC+GGG 0.383384 3.1:+40153912 None:intergenic
TGTTGGTGGTAGGTGATTCC+GGG 0.384951 3.1:-40154116 MS.gene064381:intron
AAATTCAATTTCACTAAAGT+TGG 0.387313 3.1:-40153993 MS.gene064381:CDS
CGTCAGAGGTCTTGTCTTTG+AGG 0.387565 3.1:-40153170 MS.gene064381:CDS
TTCCTTTGTATGGTTACAAA+AGG 0.388385 3.1:-40154775 MS.gene064381:CDS
TTTCGTCCACAACCATTAAC+AGG 0.391724 3.1:+40154946 None:intergenic
TTGGCGCGTCGGGAAAGAAT+TGG 0.399612 3.1:+40153922 None:intergenic
GGAGAATTCTCAACATCAAT+TGG 0.401473 3.1:+40153903 None:intergenic
GAGGCGAAGCTTCCTTTGTA+TGG 0.404392 3.1:-40154785 MS.gene064381:CDS
TTGAATTTGGTTTCATCAAA+GGG 0.405392 3.1:+40154008 None:intergenic
ATCCGATAAACATACATTGA+TGG 0.407834 3.1:+40153869 None:intergenic
GTCAGAGGTCTTGTCTTTGA+GGG 0.421271 3.1:-40153169 MS.gene064381:CDS
AGAGATCCTATTCCAATTTG+AGG 0.422058 3.1:-40153964 MS.gene064381:CDS
GGAAATCCATATTTCCGATT+GGG 0.424274 3.1:-40153479 MS.gene064381:CDS
ATTCGCGTGATCGATCCTTT+GGG 0.424300 3.1:+40153535 None:intergenic
ATTGAATTTGGTTTCATCAA+AGG 0.434141 3.1:+40154007 None:intergenic
GCTGGAGAACCTTGTCAACT+TGG 0.436753 3.1:+40154030 None:intergenic
TGGCGCGTCGGGAAAGAATT+GGG 0.439522 3.1:+40153923 None:intergenic
CAATTTGAGGCTAGCTGTGA+TGG 0.440428 3.1:-40153951 MS.gene064381:CDS
TCCTTTGTATGGTTACAAAA+GGG 0.444951 3.1:-40154774 MS.gene064381:CDS
CCGATTGGGTTACAACAGCT+TGG 0.455392 3.1:-40153465 MS.gene064381:CDS
CTCAACATCAATTGGCGCGT+CGG 0.456530 3.1:+40153911 None:intergenic
GATTCAGACCTTGGTTTCAC+AGG 0.457731 3.1:+40154247 None:intergenic
CTTTGAGGGTGGTCATGCAC+TGG 0.459659 3.1:-40153155 MS.gene064381:CDS
TAGGTGATTCCGGGTGAGTA+TGG 0.461202 3.1:-40154107 MS.gene064381:CDS
AGCTAGCCTCAAATTGGAAT+AGG 0.461916 3.1:+40153958 None:intergenic
GTTGTGTTGAAGGCAGATAC+AGG 0.468738 3.1:+40153105 None:intergenic
GGCAAGAAGCTCCCGAGCAT+TGG 0.469589 3.1:+40152436 None:intergenic
ATTCAGTTGGTCTCTTCTTG+AGG 0.471371 3.1:+40154054 None:intergenic
AAGGTATGTTGTTGTGTTGA+AGG 0.473926 3.1:+40153095 None:intergenic
CCACTGATTTCCCACACAGC+TGG 0.476673 3.1:+40152506 None:intergenic
CTTCACATGGCAGCTGAAGC+AGG 0.477098 3.1:-40153500 MS.gene064381:CDS
GGTTGTTTCGAATTATCAAA+AGG 0.477503 3.1:-40154980 MS.gene064381:CDS
CTTGTCTCCCATTGCATGCA+AGG 0.487931 3.1:-40154738 MS.gene064381:CDS
GGGCGTTCCTTGCATGCAAT+GGG 0.491885 3.1:+40154731 None:intergenic
TCAGAAATAAGAACATTGTA+AGG 0.494156 3.1:+40153076 None:intergenic
TGCGAACCAGCCACCATAGC+AGG 0.498039 3.1:+40152284 None:intergenic
ATTTGGTTTCATCAAAGGGC+TGG 0.510494 3.1:+40154012 None:intergenic
ACATTGATGGCAACAAAGCT+TGG 0.511324 3.1:+40153882 None:intergenic
AGGGCGTTCCTTGCATGCAA+TGG 0.513889 3.1:+40154730 None:intergenic
GATGCTCCTGTTAATGGTTG+TGG 0.514716 3.1:-40154952 MS.gene064381:CDS
CTCAAAGACAAGACCTCTGA+CGG 0.516269 3.1:+40153171 None:intergenic
AGGCATCTGAAGCCAATGCT+CGG 0.516305 3.1:-40152448 MS.gene064381:CDS
AGGTTAGTCCTATCGAATAT+GGG 0.517158 3.1:-40153595 MS.gene064381:CDS
ACTAAGCCTGCTATGGTGGC+TGG 0.519817 3.1:-40152290 MS.gene064381:CDS
CCAAGCTGTTGTAACCCAAT+CGG 0.521064 3.1:+40153465 None:intergenic
GAAGCCTTCTCAATTGGAAA+AGG 0.522050 3.1:+40153253 None:intergenic
AGGAAATCCATATTTCCGAT+TGG 0.522692 3.1:-40153480 MS.gene064381:CDS
AATTTGAGGCTAGCTGTGAT+GGG 0.523574 3.1:-40153950 MS.gene064381:CDS
TTCGAATTATCAAAAGGATG+AGG 0.523778 3.1:-40154974 MS.gene064381:CDS
ATGTTCTTATTTCTGACTGC+GGG 0.524095 3.1:-40153069 MS.gene064381:CDS
ATCGAGTCCAAGAAAGCCAC+AGG 0.524617 3.1:+40154710 None:intergenic
GGACTCGATTATTCTTGGAC+AGG 0.524632 3.1:-40154696 MS.gene064381:intron
GGCATCTGAAGCCAATGCTC+GGG 0.525201 3.1:-40152447 MS.gene064381:CDS
GAAGATGTTGAGTATTAAGA+GGG 0.535650 3.1:-40155010 None:intergenic
GAGTATTAAGAGGGTTCCTA+CGG 0.535658 3.1:-40155001 MS.gene064381:CDS
GATTGGGTTACAACAGCTTG+GGG 0.540251 3.1:-40153463 MS.gene064381:CDS
TGCTCGGGAGCTTCTTGCCG+AGG 0.545020 3.1:-40152432 MS.gene064381:CDS
TACGCAGAGAAACAAGCTCT+TGG 0.546314 3.1:-40152566 MS.gene064381:CDS
CTCAAACACTAAGCCTGCTA+TGG 0.552740 3.1:-40152297 MS.gene064381:CDS
GTGGACACATGGTGTTAAAG+AGG 0.553568 3.1:-40152487 MS.gene064381:CDS
GCAGATACAGGCTTCAGAAA+CGG 0.560153 3.1:+40153117 None:intergenic
AAACACTAAGCCTGCTATGG+TGG 0.560336 3.1:-40152294 MS.gene064381:CDS
TTGTCAACTTGGAATTCAGT+TGG 0.561917 3.1:+40154041 None:intergenic
TTACAAAAGGGGTGAGGCAA+AGG 0.563078 3.1:-40154762 MS.gene064381:CDS
CCTTTGTATGGTTACAAAAG+GGG 0.566646 3.1:-40154773 MS.gene064381:CDS
GAAGTGAAGATGATTAATAG+TGG 0.576187 3.1:+40153433 None:intergenic
TTCGCGTGATCGATCCTTTG+GGG 0.586652 3.1:+40153536 None:intergenic
CGCAAGTTAATCCAGCTGTG+TGG 0.587802 3.1:-40152517 MS.gene064381:CDS
TTCTTATTTCTGACTGCGGG+AGG 0.588058 3.1:-40153066 MS.gene064381:CDS
TCAACTTCCTCTAGACATTG+AGG 0.588708 3.1:+40152329 None:intergenic
TTCATTGCTCAGCTGAACGA+GGG 0.589336 3.1:-40154083 MS.gene064381:CDS
CATGGTGTTAAAGAGGAAGA+AGG 0.590993 3.1:-40152480 MS.gene064381:CDS
AGGTTTCTCTCTCTAAAGAG+AGG 0.595509 3.1:-40152412 MS.gene064381:CDS
CTCTTTAGAGAGAGAAACCT+CGG 0.595723 3.1:+40152415 None:intergenic
GCAAGTTAATCCAGCTGTGT+GGG 0.599673 3.1:-40152516 MS.gene064381:CDS
GGCAAACACTCGAAAATTCG+AGG 0.606853 3.1:+40153557 None:intergenic
GTATGGTTACAAAAGGGGTG+AGG 0.607885 3.1:-40154768 MS.gene064381:CDS
AGAGGTCTTGTCTTTGAGGG+TGG 0.617352 3.1:-40153166 MS.gene064381:CDS
TTTCATTGCTCAGCTGAACG+AGG 0.617448 3.1:-40154084 MS.gene064381:CDS
CCAGCTGTGTGGGAAATCAG+TGG 0.621970 3.1:-40152506 MS.gene064381:CDS
TCAAAGACAAGACCTCTGAC+GGG 0.628405 3.1:+40153172 None:intergenic
AACTGAATTCCAAGTTGACA+AGG 0.629423 3.1:-40154039 MS.gene064381:CDS
TTGTTTGTTACTGAAGAACA+AGG 0.630835 3.1:+40152255 None:intergenic
GAGGAAGAAGGACTTTGATG+AGG 0.633378 3.1:-40152468 MS.gene064381:CDS
TTGTTGAACTATCCCGTCAG+AGG 0.636208 3.1:-40153184 MS.gene064381:CDS
AAGATTGCCAAATTAAATGG+TGG 0.637560 3.1:-40153223 MS.gene064381:CDS
AATGTTCTTATTTCTGACTG+CGG 0.643366 3.1:-40153070 MS.gene064381:CDS
TGATAATTCGAAACAACCGT+AGG 0.645029 3.1:+40154985 None:intergenic
CACAGGCAGTAACATCGTAA+CGG 0.645185 3.1:+40154264 None:intergenic
GCAATGAAACCATACTCACC+CGG 0.655955 3.1:+40154098 None:intergenic
TGCATGCAAGGAACGCCCTG+TGG 0.656628 3.1:-40154726 MS.gene064381:CDS
TGTTACTGCCTGTGAAACCA+AGG 0.656701 3.1:-40154255 MS.gene064381:intron
AGCACATGCCCATATTCGAT+AGG 0.657099 3.1:+40153587 None:intergenic
GTGGGAAATCAGTGGACACA+TGG 0.657940 3.1:-40152498 MS.gene064381:CDS
TGTCACACCTCAATGTCTAG+AGG 0.670162 3.1:-40152336 MS.gene064381:CDS
ATTTGAGGCTAGCTGTGATG+GGG 0.674110 3.1:-40153949 MS.gene064381:CDS
ATTGGGTTACAACAGCTTGG+GGG 0.681884 3.1:-40153462 MS.gene064381:CDS
TGGGAGGATCGCATGCAGAG+AGG 0.711970 3.1:-40154293 MS.gene064381:CDS
TCGAGTCCAAGAAAGCCACA+GGG 0.731554 3.1:+40154711 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTGATTATTTATTTAT+TGG - chr3.1:40152906-40152925 MS.gene064381:intron 10.0%
!!! ATAAGCAAAATTTTAATATT+TGG - chr3.1:40154269-40154288 MS.gene064381:CDS 10.0%
!! AATAATCAATGTAAACAATA+AGG + chr3.1:40153904-40153923 None:intergenic 15.0%
!! GTTTATATTATAATTACTAG+TGG - chr3.1:40153100-40153119 MS.gene064381:CDS 15.0%
!! TTTAAATTGCAGTATTTATT+CGG - chr3.1:40153463-40153482 MS.gene064381:CDS 15.0%
!!! TAATTGATTCTTAATTTGTT+TGG + chr3.1:40153873-40153892 None:intergenic 15.0%
!!! TTATTGTTTACATTGATTAT+TGG - chr3.1:40153903-40153922 MS.gene064381:CDS 15.0%
!!! TTGTTTTTGTTTTTGAATTA+TGG - chr3.1:40152414-40152433 MS.gene064381:CDS 15.0%
!!! TTTGAGTTTTGAATTTTTTA+TGG - chr3.1:40152947-40152966 MS.gene064381:intron 15.0%
!! AAATTCAATTTCACTAAAGT+TGG - chr3.1:40153275-40153294 MS.gene064381:intron 20.0%
!! AACTTTAGTGAAATTGAATT+TGG + chr3.1:40153276-40153295 None:intergenic 20.0%
!! AATAAACTATGTAGTACAAA+TGG + chr3.1:40154485-40154504 None:intergenic 20.0%
!! ATATTCTGATACTTCATATT+GGG - chr3.1:40153488-40153507 MS.gene064381:CDS 20.0%
!! TAAAAAATTTCGGATTATCA+AGG + chr3.1:40154309-40154328 None:intergenic 20.0%
!! TATATTCTGATACTTCATAT+TGG - chr3.1:40153487-40153506 MS.gene064381:CDS 20.0%
!! TATATTTATCTTTGTCATGT+TGG - chr3.1:40152825-40152844 MS.gene064381:intron 20.0%
!!! ATCCGAAATTTTTTAATTTG+TGG - chr3.1:40154314-40154333 MS.gene064381:intron 20.0%
!!! TAATTTAAAACAATGCTTGA+TGG - chr3.1:40153598-40153617 MS.gene064381:intron 20.0%
!!! TCCGAAATTTTTTAATTTGT+GGG - chr3.1:40154315-40154334 MS.gene064381:intron 20.0%
!!! TGTTTGTGATTTGATTTTTA+AGG - chr3.1:40152383-40152402 MS.gene064381:CDS 20.0%
! AAGAAGATTGCCAAATTAAA+TGG - chr3.1:40154042-40154061 MS.gene064381:CDS 25.0%
! AATCAATGTAAACAATAAGG+TGG + chr3.1:40153901-40153920 None:intergenic 25.0%
! ACAAATTCAGGCATATTATT+TGG - chr3.1:40153987-40154006 MS.gene064381:CDS 25.0%
! CATAACCATCAATGATATAT+CGG + chr3.1:40152882-40152901 None:intergenic 25.0%
! CCCCACAAATTAAAAAATTT+CGG + chr3.1:40154319-40154338 None:intergenic 25.0%
! TACAAATGGTTGTCAAATAA+CGG + chr3.1:40154471-40154490 None:intergenic 25.0%
! TATTCTGATACTTCATATTG+GGG - chr3.1:40153489-40153508 MS.gene064381:CDS 25.0%
! TCAGAAATAAGAACATTGTA+AGG + chr3.1:40154195-40154214 None:intergenic 25.0%
! TGTTTATTTACTCGATTAAC+AGG - chr3.1:40153653-40153672 MS.gene064381:intron 25.0%
!! AAATATTGATTGTGCAATCA+AGG + chr3.1:40154651-40154670 None:intergenic 25.0%
!! AGGTAGTTATCGAATTTTTA+TGG - chr3.1:40152592-40152611 MS.gene064381:intron 25.0%
!! ATTGAATTTGGTTTCATCAA+AGG + chr3.1:40153264-40153283 None:intergenic 25.0%
!! TTCTGATTTTTGACAAATTC+AGG - chr3.1:40153975-40153994 MS.gene064381:CDS 25.0%
!! TTGAATTTGGTTTCATCAAA+GGG + chr3.1:40153263-40153282 None:intergenic 25.0%
!!! ATCGATTTTTTCAGATGTAA+TGG + chr3.1:40154913-40154932 None:intergenic 25.0%
!!! ATTATAATTACTAGTGGACT+TGG - chr3.1:40153106-40153125 MS.gene064381:CDS 25.0%
!!! CACTGTTTTTCAATTTGTAT+TGG + chr3.1:40154681-40154700 None:intergenic 25.0%
!!! CCGAAATTTTTTAATTTGTG+GGG - chr3.1:40154316-40154335 MS.gene064381:intron 25.0%
!!! TGAATTTTTTATGGTGTAGT+GGG - chr3.1:40152956-40152975 MS.gene064381:intron 25.0%
!!! TGTGTTTTTTTGGTTAATAG+AGG - chr3.1:40152464-40152483 MS.gene064381:CDS 25.0%
!!! TTGAATTTTTTATGGTGTAG+TGG - chr3.1:40152955-40152974 MS.gene064381:intron 25.0%
!!! TTGTTGTTGTTGTGTTTTTT+TGG - chr3.1:40152454-40152473 MS.gene064381:CDS 25.0%
AAGATTGCCAAATTAAATGG+TGG - chr3.1:40154045-40154064 MS.gene064381:CDS 30.0%
AAGATTTCAAGCAACTAAAG+AGG + chr3.1:40154625-40154644 None:intergenic 30.0%
ACTAGTGTTATCAATATTCG+CGG - chr3.1:40154401-40154420 MS.gene064381:intron 30.0%
AGATTTCAAGCAACTAAAGA+GGG + chr3.1:40154624-40154643 None:intergenic 30.0%
ATCAAGGATTACGATTTAAG+AGG + chr3.1:40154342-40154361 None:intergenic 30.0%
ATCCGATAAACATACATTGA+TGG + chr3.1:40153402-40153421 None:intergenic 30.0%
ATTTGTTTGGTTAAGATACC+TGG + chr3.1:40153860-40153879 None:intergenic 30.0%
CTGAAAAACTAATTTACCTG+TGG + chr3.1:40154243-40154262 None:intergenic 30.0%
GAAGTGAAGATGATTAATAG+TGG + chr3.1:40153838-40153857 None:intergenic 30.0%
TAAATACTGGATATAGAAGC+AGG + chr3.1:40154555-40154574 None:intergenic 30.0%
TATCCAGTATTTAACAACAC+TGG - chr3.1:40154562-40154581 MS.gene064381:intron 30.0%
TATTAATCATCTTCACTTCC+AGG - chr3.1:40153839-40153858 MS.gene064381:intron 30.0%
TCCTTTGTATGGTTACAAAA+GGG - chr3.1:40152494-40152513 MS.gene064381:CDS 30.0%
TGCCATCAATGTATGTTTAT+CGG - chr3.1:40153397-40153416 MS.gene064381:intron 30.0%
TTCCTTTGTATGGTTACAAA+AGG - chr3.1:40152493-40152512 MS.gene064381:CDS 30.0%
TTCGAATTATCAAAAGGATG+AGG - chr3.1:40152294-40152313 MS.gene064381:CDS 30.0%
TTTCACACCACCATTTAATT+TGG + chr3.1:40154055-40154074 None:intergenic 30.0%
! ATCACGTTTTCATTCATTGT+TGG + chr3.1:40153954-40153973 None:intergenic 30.0%
! CTTGATAATCTAGTCAAATG+CGG - chr3.1:40154356-40154375 MS.gene064381:intron 30.0%
! GGTTGTTTCGAATTATCAAA+AGG - chr3.1:40152288-40152307 MS.gene064381:CDS 30.0%
!! AATGTTCTTATTTCTGACTG+CGG - chr3.1:40154198-40154217 MS.gene064381:intron 30.0%
!!! ACGTTTTAGAAACTTGAGTA+TGG - chr3.1:40152729-40152748 MS.gene064381:intron 30.0%
!!! GTATGTGTGGTTTTTTTTGT+TGG - chr3.1:40153135-40153154 MS.gene064381:CDS 30.0%
AAGGTATGTTGTTGTGTTGA+AGG + chr3.1:40154176-40154195 None:intergenic 35.0%
ACGGTTATAGTACTATTGTG+TGG + chr3.1:40154452-40154471 None:intergenic 35.0%
AGAGATCCTATTCCAATTTG+AGG - chr3.1:40153304-40153323 MS.gene064381:intron 35.0%
AGGAAATCCATATTTCCGAT+TGG - chr3.1:40153788-40153807 MS.gene064381:intron 35.0%
CATTGTTGGAACACTAGATA+AGG + chr3.1:40153940-40153959 None:intergenic 35.0%
CCTTTGTATGGTTACAAAAG+GGG - chr3.1:40152495-40152514 MS.gene064381:CDS 35.0%
CGCATTTGACTAGATTATCA+AGG + chr3.1:40154358-40154377 None:intergenic 35.0%
CTCAAGAGTTGTTGTATTCA+AGG - chr3.1:40152349-40152368 MS.gene064381:CDS 35.0%
GGAAATCCATATTTCCGATT+GGG - chr3.1:40153789-40153808 MS.gene064381:intron 35.0%
GGAGAATTCTCAACATCAAT+TGG + chr3.1:40153368-40153387 None:intergenic 35.0%
GGATTATCAAGGATTGTAAG+AGG + chr3.1:40154298-40154317 None:intergenic 35.0%
TCAATATTCGCGGAAAATAG+CGG - chr3.1:40154411-40154430 MS.gene064381:intron 35.0%
TGATAATTCGAAACAACCGT+AGG + chr3.1:40152286-40152305 None:intergenic 35.0%
TTAGTAGAAGCCTTCTCAAT+TGG + chr3.1:40154024-40154043 None:intergenic 35.0%
TTATCAAGGATTGTAAGAGG+CGG + chr3.1:40154295-40154314 None:intergenic 35.0%
TTCTTGGACTCGATTATTCT+TGG - chr3.1:40152567-40152586 MS.gene064381:CDS 35.0%
TTGTAACCCAATCGGAAATA+TGG + chr3.1:40153798-40153817 None:intergenic 35.0%
TTGTCAACTTGGAATTCAGT+TGG + chr3.1:40153230-40153249 None:intergenic 35.0%
TTTAACAACACTGGATGTCA+TGG - chr3.1:40154571-40154590 MS.gene064381:intron 35.0%
! AACTGAATTCCAAGTTGACA+AGG - chr3.1:40153229-40153248 MS.gene064381:CDS 35.0%
! AGGTTAGTCCTATCGAATAT+GGG - chr3.1:40153673-40153692 MS.gene064381:intron 35.0%
! CATCCAGTGTTGTTAAATAC+TGG + chr3.1:40154568-40154587 None:intergenic 35.0%
!! AAGTGCCGATATATCATTGA+TGG - chr3.1:40152874-40152893 MS.gene064381:intron 35.0%
!! ATGTTCTTATTTCTGACTGC+GGG - chr3.1:40154199-40154218 MS.gene064381:intron 35.0%
!! TCTTTTTGTCGTTTAGTGCA+TGG - chr3.1:40153439-40153458 MS.gene064381:CDS 35.0%
!!! ATTTTTTATGGTGTAGTGGG+AGG - chr3.1:40152959-40152978 MS.gene064381:intron 35.0%
!!! TGGTTTTTTTTGTTGGTGGT+AGG - chr3.1:40153142-40153161 MS.gene064381:CDS 35.0%
!!! TGTGTGGTTTTTTTTGTTGG+TGG - chr3.1:40153138-40153157 MS.gene064381:CDS 35.0%
AAATTGCAGCCGCAATGTAA+GGG + chr3.1:40153564-40153583 None:intergenic 40.0%
ATAGAGAGAGATTCAGACCT+TGG + chr3.1:40153033-40153052 None:intergenic 40.0%
GAAGCCTTCTCAATTGGAAA+AGG + chr3.1:40154018-40154037 None:intergenic 40.0%
GAGGGTTATAAGATAGTCTG+AGG + chr3.1:40154606-40154625 None:intergenic 40.0%
GAGTATTAAGAGGGTTCCTA+CGG - chr3.1:40152267-40152286 MS.gene064381:CDS 40.0%
GGTCACCTATGAAGTATAGA+CGG - chr3.1:40152613-40152632 MS.gene064381:intron 40.0%
GTCAACGTCAGTGTTATGTT+CGG + chr3.1:40152758-40152777 None:intergenic 40.0%
GTTTGCCGTCTATACTTCAT+AGG + chr3.1:40152621-40152640 None:intergenic 40.0%
TCAACTTCCTCTAGACATTG+AGG + chr3.1:40154942-40154961 None:intergenic 40.0%
TTTCGTCCACAACCATTAAC+AGG + chr3.1:40152325-40152344 None:intergenic 40.0%
! AATTTGAGGCTAGCTGTGAT+GGG - chr3.1:40153318-40153337 MS.gene064381:intron 40.0%
! ACATTGATGGCAACAAAGCT+TGG + chr3.1:40153389-40153408 None:intergenic 40.0%
! AGCTAGCCTCAAATTGGAAT+AGG + chr3.1:40153313-40153332 None:intergenic 40.0%
! AGGTTTCTCTCTCTAAAGAG+AGG - chr3.1:40154856-40154875 MS.gene064381:intron 40.0%
! ATTCAGTTGGTCTCTTCTTG+AGG + chr3.1:40153217-40153236 None:intergenic 40.0%
! ATTTGGTTTCATCAAAGGGC+TGG + chr3.1:40153259-40153278 None:intergenic 40.0%
! CAGGTTAGTCCTATCGAATA+TGG - chr3.1:40153672-40153691 MS.gene064381:intron 40.0%
! CATGGTGTTAAAGAGGAAGA+AGG - chr3.1:40154788-40154807 MS.gene064381:intron 40.0%
! CCCCTTTTGTAACCATACAA+AGG + chr3.1:40152498-40152517 None:intergenic 40.0%
! CTCTTTAGAGAGAGAAACCT+CGG + chr3.1:40154856-40154875 None:intergenic 40.0%
! GCTTGATGGTTCAGTTGAAT+AGG - chr3.1:40153612-40153631 MS.gene064381:intron 40.0%
! TCTGCCTTTTCCAATTGAGA+AGG - chr3.1:40154011-40154030 MS.gene064381:CDS 40.0%
! TGATAACACTAGTGCCACTA+AGG + chr3.1:40154394-40154413 None:intergenic 40.0%
! TTTTTCGCTTGCACTTCACA+TGG - chr3.1:40153755-40153774 MS.gene064381:intron 40.0%
!! AGCAGGAAAGTGCTATATCA+TGG + chr3.1:40154538-40154557 None:intergenic 40.0%
!! AGGAAAGTGCTATATCATGG+TGG + chr3.1:40154535-40154554 None:intergenic 40.0%
AAACACTAAGCCTGCTATGG+TGG - chr3.1:40154974-40154993 MS.gene064381:CDS 45.0%
AATTCGCGTGATCGATCCTT+TGG + chr3.1:40153737-40153756 None:intergenic 45.0%
AGCACATGCCCATATTCGAT+AGG + chr3.1:40153684-40153703 None:intergenic 45.0%
ATTCGCGTGATCGATCCTTT+GGG + chr3.1:40153736-40153755 None:intergenic 45.0%
ATTGGGTTACAACAGCTTGG+GGG - chr3.1:40153806-40153825 MS.gene064381:intron 45.0%
CAAATTGCAGCCGCAATGTA+AGG + chr3.1:40153565-40153584 None:intergenic 45.0%
CACAGGCAGTAACATCGTAA+CGG + chr3.1:40153007-40153026 None:intergenic 45.0%
CCAAGCTGTTGTAACCCAAT+CGG + chr3.1:40153806-40153825 None:intergenic 45.0%
CCATAGTTTATGTCGCGATG+CGG - chr3.1:40153521-40153540 MS.gene064381:CDS 45.0%
CCTCCAAAACCCTTACATTG+CGG - chr3.1:40153552-40153571 MS.gene064381:CDS 45.0%
CGATTGGGTTACAACAGCTT+GGG - chr3.1:40153804-40153823 MS.gene064381:intron 45.0%
CTCAAACACTAAGCCTGCTA+TGG - chr3.1:40154971-40154990 MS.gene064381:CDS 45.0%
CTCAAAGACAAGACCTCTGA+CGG + chr3.1:40154100-40154119 None:intergenic 45.0%
GACGTTGACACATACAGCTA+TGG - chr3.1:40152769-40152788 MS.gene064381:intron 45.0%
GAGGAAGAAGGACTTTGATG+AGG - chr3.1:40154800-40154819 MS.gene064381:intron 45.0%
GATGAGGATGCTCCTGTTAA+TGG - chr3.1:40152310-40152329 MS.gene064381:CDS 45.0%
GATGCTCCTGTTAATGGTTG+TGG - chr3.1:40152316-40152335 MS.gene064381:CDS 45.0%
GATTCAGACCTTGGTTTCAC+AGG + chr3.1:40153024-40153043 None:intergenic 45.0%
GATTGGGTTACAACAGCTTG+GGG - chr3.1:40153805-40153824 MS.gene064381:intron 45.0%
GCAAGTTAATCCAGCTGTGT+GGG - chr3.1:40154752-40154771 MS.gene064381:CDS 45.0%
GCAATGAAACCATACTCACC+CGG + chr3.1:40153173-40153192 None:intergenic 45.0%
GCAGATACAGGCTTCAGAAA+CGG + chr3.1:40154154-40154173 None:intergenic 45.0%
GGACTCGATTATTCTTGGAC+AGG - chr3.1:40152572-40152591 MS.gene064381:CDS 45.0%
GGCAAACACTCGAAAATTCG+AGG + chr3.1:40153714-40153733 None:intergenic 45.0%
GTATGGTTACAAAAGGGGTG+AGG - chr3.1:40152500-40152519 MS.gene064381:CDS 45.0%
GTCATGTTGGCGTTAGAAAC+TGG - chr3.1:40152838-40152857 MS.gene064381:intron 45.0%
GTTGTGTTGAAGGCAGATAC+AGG + chr3.1:40154166-40154185 None:intergenic 45.0%
TACATTGCGGCTGCAATTTG+CGG - chr3.1:40153565-40153584 MS.gene064381:CDS 45.0%
TACGCAGAGAAACAAGCTCT+TGG - chr3.1:40154702-40154721 MS.gene064381:CDS 45.0%
TCAAAGACAAGACCTCTGAC+GGG + chr3.1:40154099-40154118 None:intergenic 45.0%
TGCCACTAAGGTTGTGTTTG+AGG + chr3.1:40154382-40154401 None:intergenic 45.0%
TGTCACACCTCAATGTCTAG+AGG - chr3.1:40154932-40154951 MS.gene064381:CDS 45.0%
TGTTACTGCCTGTGAAACCA+AGG - chr3.1:40153013-40153032 MS.gene064381:intron 45.0%
TTACAAAAGGGGTGAGGCAA+AGG - chr3.1:40152506-40152525 MS.gene064381:CDS 45.0%
TTCATTGCTCAGCTGAACGA+GGG - chr3.1:40153185-40153204 MS.gene064381:CDS 45.0%
TTGTTGAACTATCCCGTCAG+AGG - chr3.1:40154084-40154103 MS.gene064381:CDS 45.0%
TTTCATTGCTCAGCTGAACG+AGG - chr3.1:40153184-40153203 MS.gene064381:CDS 45.0%
! ATTTGAGGCTAGCTGTGATG+GGG - chr3.1:40153319-40153338 MS.gene064381:intron 45.0%
! CAATTTGAGGCTAGCTGTGA+TGG - chr3.1:40153317-40153336 MS.gene064381:intron 45.0%
! CATCACAGCTAGCCTCAAAT+TGG + chr3.1:40153319-40153338 None:intergenic 45.0%
! GACTTGGTCTCATGTATGTG+TGG - chr3.1:40153122-40153141 MS.gene064381:CDS 45.0%
! GCGAGTTTTTCTCTTACCAC+AGG - chr3.1:40154224-40154243 MS.gene064381:intron 45.0%
! GTCAGAGGTCTTGTCTTTGA+GGG - chr3.1:40154099-40154118 MS.gene064381:CDS 45.0%
! GTGGACACATGGTGTTAAAG+AGG - chr3.1:40154781-40154800 MS.gene064381:CDS 45.0%
!! TTCTTATTTCTGACTGCGGG+AGG - chr3.1:40154202-40154221 MS.gene064381:intron 45.0%
!! TTGTTGGTGGTAGGTGATTC+CGG - chr3.1:40153151-40153170 MS.gene064381:CDS 45.0%
!!! TTTTCGAGTGTTTGCCCCAA+AGG - chr3.1:40153718-40153737 MS.gene064381:intron 45.0%
ATCGAGTCCAAGAAAGCCAC+AGG + chr3.1:40152561-40152580 None:intergenic 50.0%
CCGATTGGGTTACAACAGCT+TGG - chr3.1:40153803-40153822 MS.gene064381:intron 50.0%
CCGCATCGCGACATAAACTA+TGG + chr3.1:40153524-40153543 None:intergenic 50.0%
CGCAAGTTAATCCAGCTGTG+TGG - chr3.1:40154751-40154770 MS.gene064381:CDS 50.0%
CTCAACATCAATTGGCGCGT+CGG + chr3.1:40153360-40153379 None:intergenic 50.0%
CTTGTCTCCCATTGCATGCA+AGG - chr3.1:40152530-40152549 MS.gene064381:CDS 50.0%
GAGGCGAAGCTTCCTTTGTA+TGG - chr3.1:40152483-40152502 MS.gene064381:CDS 50.0%
GCTGGAGAACCTTGTCAACT+TGG + chr3.1:40153241-40153260 None:intergenic 50.0%
GGCCTCAAACACAACCTTAG+TGG - chr3.1:40154377-40154396 MS.gene064381:intron 50.0%
GTGGGAAATCAGTGGACACA+TGG - chr3.1:40154770-40154789 MS.gene064381:CDS 50.0%
TAGGTGATTCCGGGTGAGTA+TGG - chr3.1:40153161-40153180 MS.gene064381:CDS 50.0%
TCAACATCAATTGGCGCGTC+GGG + chr3.1:40153359-40153378 None:intergenic 50.0%
TCGAGTCCAAGAAAGCCACA+GGG + chr3.1:40152560-40152579 None:intergenic 50.0%
TTCGCGTGATCGATCCTTTG+GGG + chr3.1:40153735-40153754 None:intergenic 50.0%
! AGAGGTCTTGTCTTTGAGGG+TGG - chr3.1:40154102-40154121 MS.gene064381:CDS 50.0%
! AGGCATCTGAAGCCAATGCT+CGG - chr3.1:40154820-40154839 MS.gene064381:intron 50.0%
! CAGCCGCAATGTAAGGGTTT+TGG + chr3.1:40153558-40153577 None:intergenic 50.0%
! CGTCAGAGGTCTTGTCTTTG+AGG - chr3.1:40154098-40154117 MS.gene064381:CDS 50.0%
!! CCGCAATGTAAGGGTTTTGG+AGG + chr3.1:40153555-40153574 None:intergenic 50.0%
!! TGTTGGTGGTAGGTGATTCC+GGG - chr3.1:40153152-40153171 MS.gene064381:CDS 50.0%
ACTAAGCCTGCTATGGTGGC+TGG - chr3.1:40154978-40154997 MS.gene064381:CDS 55.0%
CCAGCTGTGTGGGAAATCAG+TGG - chr3.1:40154762-40154781 MS.gene064381:CDS 55.0%
CTTCACATGGCAGCTGAAGC+AGG - chr3.1:40153768-40153787 MS.gene064381:intron 55.0%
GGGCGTTCCTTGCATGCAAT+GGG + chr3.1:40152540-40152559 None:intergenic 55.0%
TGGCGCGTCGGGAAAGAATT+GGG + chr3.1:40153348-40153367 None:intergenic 55.0%
TTGGCGCGTCGGGAAAGAAT+TGG + chr3.1:40153349-40153368 None:intergenic 55.0%
! AGAAGTGCGTGCTGAGCTTC+TGG - chr3.1:40154725-40154744 MS.gene064381:CDS 55.0%
! AGGGCGTTCCTTGCATGCAA+TGG + chr3.1:40152541-40152560 None:intergenic 55.0%
! CTTTGAGGGTGGTCATGCAC+TGG - chr3.1:40154113-40154132 MS.gene064381:intron 55.0%
! GGCATCTGAAGCCAATGCTC+GGG - chr3.1:40154821-40154840 MS.gene064381:intron 55.0%
!! CCACTGATTTCCCACACAGC+TGG + chr3.1:40154765-40154784 None:intergenic 55.0%
GGAACGCCCTGTGGCTTTCT+TGG - chr3.1:40152551-40152570 MS.gene064381:CDS 60.0%
GGCAAGAAGCTCCCGAGCAT+TGG + chr3.1:40154835-40154854 None:intergenic 60.0%
TGCATGCAAGGAACGCCCTG+TGG - chr3.1:40152542-40152561 MS.gene064381:CDS 60.0%
TGCGAACCAGCCACCATAGC+AGG + chr3.1:40154987-40155006 None:intergenic 60.0%
TGGGAGGATCGCATGCAGAG+AGG - chr3.1:40152975-40152994 MS.gene064381:intron 60.0%
TGCTCGGGAGCTTCTTGCCG+AGG - chr3.1:40154836-40154855 MS.gene064381:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 40152262 40155028 40152262 ID=MS.gene064381
chr3.1 mRNA 40152262 40155028 40152262 ID=MS.gene064381.t1;Parent=MS.gene064381
chr3.1 exon 40154920 40155028 40154920 ID=MS.gene064381.t1.exon1;Parent=MS.gene064381.t1
chr3.1 CDS 40154920 40155028 40154920 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40154697 40154806 40154697 ID=MS.gene064381.t1.exon2;Parent=MS.gene064381.t1
chr3.1 CDS 40154697 40154806 40154697 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40154256 40154315 40154256 ID=MS.gene064381.t1.exon3;Parent=MS.gene064381.t1
chr3.1 CDS 40154256 40154315 40154256 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40153884 40154126 40153884 ID=MS.gene064381.t1.exon4;Parent=MS.gene064381.t1
chr3.1 CDS 40153884 40154126 40153884 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40153430 40153615 40153430 ID=MS.gene064381.t1.exon5;Parent=MS.gene064381.t1
chr3.1 CDS 40153430 40153615 40153430 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40153045 40153293 40153045 ID=MS.gene064381.t1.exon6;Parent=MS.gene064381.t1
chr3.1 CDS 40153045 40153293 40153045 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
chr3.1 exon 40152262 40152591 40152262 ID=MS.gene064381.t1.exon7;Parent=MS.gene064381.t1
chr3.1 CDS 40152262 40152591 40152262 ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1
Gene Sequence

>MS.gene064381

ATGTTGAGTATTAAGAGGGTTCCTACGGTTGTTTCGAATTATCAAAAGGATGAGGATGCTCCTGTTAATGGTTGTGGACGAAATTGTCTCAAGAGTTGTTGTATTCAAGGTAGTGTTTTTTTGTTTGTGATTTGATTTTTAAGGTTTTGTGTTTGTTTTTGTTTTTGAATTATGGATGATGATGATGTTTTTTTGTTGTTGTTGTGTTTTTTTGGTTAATAGAGGCGAAGCTTCCTTTGTATGGTTACAAAAGGGGTGAGGCAAAGGACTTGTCTCCCATTGCATGCAAGGAACGCCCTGTGGCTTTCTTGGACTCGATTATTCTTGGACAGGTAGTTATCGAATTTTTATGGTCACCTATGAAGTATAGACGGCAAACACGACACTGACACTGACACGTATACATCAGTCATAATTTAAGAAAATAGAGATGATTAAATTTAATTATTTATGTATCTTTGTCATGTACGTTTTAGAAACTTGAGTATGGACACCGAACATAACACTGACGTTGACACATACAGCTATGGTATTTTAAGAAAATAGAGATGATTGAATGTACTTATATTTATCTTTGTCATGTTGGCGTTAGAAACTGGCATATTCAATTTGAAGTGCCGATATATCATTGATGGTTATGAACAAGTTTTGATTATTTATTTATTGGTGTCTGTTATGTTATGTTTTTGAGTTTTGAATTTTTTATGGTGTAGTGGGAGGATCGCATGCAGAGAGGACTGTTCCGTTACGATGTTACTGCCTGTGAAACCAAGGTCTGAATCTCTCTCTATTTGAAATTATTGTTATTGTTGTTATATTTTCTTCTGATTTTGTTTTCGTTTATATTATAATTACTAGTGGACTTGGTCTCATGTATGTGTGGTTTTTTTTGTTGGTGGTAGGTGATTCCGGGTGAGTATGGTTTCATTGCTCAGCTGAACGAGGGTCGTCACCTCAAGAAGAGACCAACTGAATTCCAAGTTGACAAGGTTCTCCAGCCCTTTGATGAAACCAAATTCAATTTCACTAAAGTTGGACAAGAAGAGATCCTATTCCAATTTGAGGCTAGCTGTGATGGGGAAGCCCAATTCTTTCCCGACGCGCCAATTGATGTTGAGAATTCTCCAAGCTTTGTTGCCATCAATGTATGTTTATCGGATTTTTTTTCTTTGTATGATCTTTTTGTCGTTTAGTGCATGGTTTTAAATTGCAGTATTTATTCGGTTATATTCTGATACTTCATATTGGGGCAAATGCGACCATAGTTTATGTCGCGATGCGGTTGTAAGACCTCCAAAACCCTTACATTGCGGCTGCAATTTGCGGTTGCGTACTGTAATTTAAAACAATGCTTGATGGTTCAGTTGAATAGGTTTTTATATGATGCTTTTTGTTTATTTACTCGATTAACAGGTTAGTCCTATCGAATATGGGCATGTGCTTCTGATTCCTCGAATTTTCGAGTGTTTGCCCCAAAGGATCGATCACGCGAATTTTTCGCTTGCACTTCACATGGCAGCTGAAGCAGGAAATCCATATTTCCGATTGGGTTACAACAGCTTGGGGGCTTTCGCCACTATTAATCATCTTCACTTCCAGGTATCTTAACCAAACAAATTAAGAATCAATTAAATGACCACCTTATTGTTTACATTGATTATTGGTTTATTGCATTCCTTATCTAGTGTTCCAACAATGAATGAAAACGTGATTTTCTGATTTTTGACAAATTCAGGCATATTATTTGGCTCTGCCTTTTCCAATTGAGAAGGCTTCTACTAAGAAGATTGCCAAATTAAATGGTGGTGTGAAAATATCTAAATTGTTGAACTATCCCGTCAGAGGTCTTGTCTTTGAGGGTGGTCATGCACTGGATGATTTAGCAAACACCGTTTCTGAAGCCTGTATCTGCCTTCAACACAACAACATACCTTACAATGTTCTTATTTCTGACTGCGGGAGGCGAGTTTTTCTCTTACCACAGGTAAATTAGTTTTTCAGTCTATCATAAGCAAAATTTTAATATTTGGCCGCCTCTTACAATCCTTGATAATCCGAAATTTTTTAATTTGTGGGGCCTCTTAAATCGTAATCCTTGATAATCTAGTCAAATGCGGCCTCAAACACAACCTTAGTGGCACTAGTGTTATCAATATTCGCGGAAAATAGCGGTTTGTTCAAACTCTGCCACACAATAGTACTATAACCGTTATTTGACAACCATTTGTACTACATAGTTTATTGTAGAACAATAGTGATTTATTTAAATTCCACCATGATATAGCACTTTCCTGCTTCTATATCCAGTATTTAACAACACTGGATGTCATGGTTCATATTGCCTCAGACTATCTTATAACCCTCTTTAGTTGCTTGAAATCTTATTCCTTGATTGCACAATCAATATTTTTGCTAACCAATACAAATTGAAAAACAGTGCTACGCAGAGAAACAAGCTCTTGGAGAAGTGCGTGCTGAGCTTCTGGACACGCAAGTTAATCCAGCTGTGTGGGAAATCAGTGGACACATGGTGTTAAAGAGGAAGAAGGACTTTGATGAGGCATCTGAAGCCAATGCTCGGGAGCTTCTTGCCGAGGTTTCTCTCTCTAAAGAGAGGTTTGAAGAAGTCAATGCTCTTATTTTTCAAGCCATTACATCTGAAAAAATCGATGTCACACCTCAATGTCTAGAGGAAGTTGATGCAGTAAGCTCAAACACTAAGCCTGCTATGGTGGCTGGTTCGCATGAATGCCTTGTTCTTCAGTAA

Protein sequence

>MS.gene064381.t1

MLSIKRVPTVVSNYQKDEDAPVNGCGRNCLKSCCIQEAKLPLYGYKRGEAKDLSPIACKERPVAFLDSIILGQWEDRMQRGLFRYDVTACETKVIPGEYGFIAQLNEGRHLKKRPTEFQVDKVLQPFDETKFNFTKVGQEEILFQFEASCDGEAQFFPDAPIDVENSPSFVAINVSPIEYGHVLLIPRIFECLPQRIDHANFSLALHMAAEAGNPYFRLGYNSLGAFATINHLHFQAYYLALPFPIEKASTKKIAKLNGGVKISKLLNYPVRGLVFEGGHALDDLANTVSEACICLQHNNIPYNVLISDCGRRVFLLPQCYAEKQALGEVRAELLDTQVNPAVWEISGHMVLKRKKDFDEASEANARELLAEVSLSKERFEEVNALIFQAITSEKIDVTPQCLEEVDAVSSNTKPAMVAGSHECLVLQ