Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064381.t1 | XP_013459834.1 | 97.9 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 1.60E-245 | 858.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064381.t1 | Q8RWE8 | 68.7 | 444 | 121 | 7 | 1 | 428 | 1 | 442 | 2.9e-171 | 602.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064381.t1 | A0A072V6W1 | 97.9 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 1.2e-245 | 858.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052641 | MS.gene064381 | 0.817872 | 2.63E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064381.t1 | MTR_3g053020 | 97.897 | 428 | 9 | 0 | 1 | 428 | 1 | 428 | 0.0 | 872 |
MS.gene064381.t1 | MTR_5g093390 | 79.909 | 438 | 78 | 5 | 1 | 428 | 2 | 439 | 0.0 | 708 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene064381.t1 | AT4G26850 | 68.694 | 444 | 121 | 7 | 1 | 428 | 1 | 442 | 0.0 | 609 |
MS.gene064381.t1 | AT5G55120 | 73.858 | 394 | 97 | 2 | 1 | 391 | 2 | 392 | 0.0 | 606 |
Find 118 sgRNAs with CRISPR-Local
Find 203 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATTCAGGCATATTATT+TGG | 0.159533 | 3.1:-40153281 | MS.gene064381:intron |
TTTCACACCACCATTTAATT+TGG | 0.178763 | 3.1:+40153216 | None:intergenic |
AACTTTAGTGAAATTGAATT+TGG | 0.227080 | 3.1:+40153995 | None:intergenic |
GGAACGCCCTGTGGCTTTCT+TGG | 0.262977 | 3.1:-40154717 | MS.gene064381:CDS |
TTGTAACCCAATCGGAAATA+TGG | 0.278287 | 3.1:+40153473 | None:intergenic |
TTGTTGGTGGTAGGTGATTC+CGG | 0.284474 | 3.1:-40154117 | MS.gene064381:intron |
AAGAAGATTGCCAAATTAAA+TGG | 0.286112 | 3.1:-40153226 | MS.gene064381:CDS |
CAGGTTAGTCCTATCGAATA+TGG | 0.292372 | 3.1:-40153596 | MS.gene064381:CDS |
AGAAGTGCGTGCTGAGCTTC+TGG | 0.300654 | 3.1:-40152543 | MS.gene064381:CDS |
TTCTTGGACTCGATTATTCT+TGG | 0.312041 | 3.1:-40154701 | MS.gene064381:CDS |
CGATTGGGTTACAACAGCTT+GGG | 0.321121 | 3.1:-40153464 | MS.gene064381:CDS |
TATTAATCATCTTCACTTCC+AGG | 0.342444 | 3.1:-40153429 | MS.gene064381:intron |
GATGAGGATGCTCCTGTTAA+TGG | 0.346887 | 3.1:-40154958 | MS.gene064381:CDS |
AATTCGCGTGATCGATCCTT+TGG | 0.351058 | 3.1:+40153534 | None:intergenic |
CATCACAGCTAGCCTCAAAT+TGG | 0.351329 | 3.1:+40153952 | None:intergenic |
AGAAGATGTTGAGTATTAAG+AGG | 0.359887 | 3.1:-40155011 | None:intergenic |
CTCAAGAGTTGTTGTATTCA+AGG | 0.361415 | 3.1:-40154919 | MS.gene064381:intron |
TTAGTAGAAGCCTTCTCAAT+TGG | 0.368160 | 3.1:+40153247 | None:intergenic |
TCAACATCAATTGGCGCGTC+GGG | 0.383384 | 3.1:+40153912 | None:intergenic |
TGTTGGTGGTAGGTGATTCC+GGG | 0.384951 | 3.1:-40154116 | MS.gene064381:intron |
AAATTCAATTTCACTAAAGT+TGG | 0.387313 | 3.1:-40153993 | MS.gene064381:CDS |
CGTCAGAGGTCTTGTCTTTG+AGG | 0.387565 | 3.1:-40153170 | MS.gene064381:CDS |
TTCCTTTGTATGGTTACAAA+AGG | 0.388385 | 3.1:-40154775 | MS.gene064381:CDS |
TTTCGTCCACAACCATTAAC+AGG | 0.391724 | 3.1:+40154946 | None:intergenic |
TTGGCGCGTCGGGAAAGAAT+TGG | 0.399612 | 3.1:+40153922 | None:intergenic |
GGAGAATTCTCAACATCAAT+TGG | 0.401473 | 3.1:+40153903 | None:intergenic |
GAGGCGAAGCTTCCTTTGTA+TGG | 0.404392 | 3.1:-40154785 | MS.gene064381:CDS |
TTGAATTTGGTTTCATCAAA+GGG | 0.405392 | 3.1:+40154008 | None:intergenic |
ATCCGATAAACATACATTGA+TGG | 0.407834 | 3.1:+40153869 | None:intergenic |
GTCAGAGGTCTTGTCTTTGA+GGG | 0.421271 | 3.1:-40153169 | MS.gene064381:CDS |
AGAGATCCTATTCCAATTTG+AGG | 0.422058 | 3.1:-40153964 | MS.gene064381:CDS |
GGAAATCCATATTTCCGATT+GGG | 0.424274 | 3.1:-40153479 | MS.gene064381:CDS |
ATTCGCGTGATCGATCCTTT+GGG | 0.424300 | 3.1:+40153535 | None:intergenic |
ATTGAATTTGGTTTCATCAA+AGG | 0.434141 | 3.1:+40154007 | None:intergenic |
GCTGGAGAACCTTGTCAACT+TGG | 0.436753 | 3.1:+40154030 | None:intergenic |
TGGCGCGTCGGGAAAGAATT+GGG | 0.439522 | 3.1:+40153923 | None:intergenic |
CAATTTGAGGCTAGCTGTGA+TGG | 0.440428 | 3.1:-40153951 | MS.gene064381:CDS |
TCCTTTGTATGGTTACAAAA+GGG | 0.444951 | 3.1:-40154774 | MS.gene064381:CDS |
CCGATTGGGTTACAACAGCT+TGG | 0.455392 | 3.1:-40153465 | MS.gene064381:CDS |
CTCAACATCAATTGGCGCGT+CGG | 0.456530 | 3.1:+40153911 | None:intergenic |
GATTCAGACCTTGGTTTCAC+AGG | 0.457731 | 3.1:+40154247 | None:intergenic |
CTTTGAGGGTGGTCATGCAC+TGG | 0.459659 | 3.1:-40153155 | MS.gene064381:CDS |
TAGGTGATTCCGGGTGAGTA+TGG | 0.461202 | 3.1:-40154107 | MS.gene064381:CDS |
AGCTAGCCTCAAATTGGAAT+AGG | 0.461916 | 3.1:+40153958 | None:intergenic |
GTTGTGTTGAAGGCAGATAC+AGG | 0.468738 | 3.1:+40153105 | None:intergenic |
GGCAAGAAGCTCCCGAGCAT+TGG | 0.469589 | 3.1:+40152436 | None:intergenic |
ATTCAGTTGGTCTCTTCTTG+AGG | 0.471371 | 3.1:+40154054 | None:intergenic |
AAGGTATGTTGTTGTGTTGA+AGG | 0.473926 | 3.1:+40153095 | None:intergenic |
CCACTGATTTCCCACACAGC+TGG | 0.476673 | 3.1:+40152506 | None:intergenic |
CTTCACATGGCAGCTGAAGC+AGG | 0.477098 | 3.1:-40153500 | MS.gene064381:CDS |
GGTTGTTTCGAATTATCAAA+AGG | 0.477503 | 3.1:-40154980 | MS.gene064381:CDS |
CTTGTCTCCCATTGCATGCA+AGG | 0.487931 | 3.1:-40154738 | MS.gene064381:CDS |
GGGCGTTCCTTGCATGCAAT+GGG | 0.491885 | 3.1:+40154731 | None:intergenic |
TCAGAAATAAGAACATTGTA+AGG | 0.494156 | 3.1:+40153076 | None:intergenic |
TGCGAACCAGCCACCATAGC+AGG | 0.498039 | 3.1:+40152284 | None:intergenic |
ATTTGGTTTCATCAAAGGGC+TGG | 0.510494 | 3.1:+40154012 | None:intergenic |
ACATTGATGGCAACAAAGCT+TGG | 0.511324 | 3.1:+40153882 | None:intergenic |
AGGGCGTTCCTTGCATGCAA+TGG | 0.513889 | 3.1:+40154730 | None:intergenic |
GATGCTCCTGTTAATGGTTG+TGG | 0.514716 | 3.1:-40154952 | MS.gene064381:CDS |
CTCAAAGACAAGACCTCTGA+CGG | 0.516269 | 3.1:+40153171 | None:intergenic |
AGGCATCTGAAGCCAATGCT+CGG | 0.516305 | 3.1:-40152448 | MS.gene064381:CDS |
AGGTTAGTCCTATCGAATAT+GGG | 0.517158 | 3.1:-40153595 | MS.gene064381:CDS |
ACTAAGCCTGCTATGGTGGC+TGG | 0.519817 | 3.1:-40152290 | MS.gene064381:CDS |
CCAAGCTGTTGTAACCCAAT+CGG | 0.521064 | 3.1:+40153465 | None:intergenic |
GAAGCCTTCTCAATTGGAAA+AGG | 0.522050 | 3.1:+40153253 | None:intergenic |
AGGAAATCCATATTTCCGAT+TGG | 0.522692 | 3.1:-40153480 | MS.gene064381:CDS |
AATTTGAGGCTAGCTGTGAT+GGG | 0.523574 | 3.1:-40153950 | MS.gene064381:CDS |
TTCGAATTATCAAAAGGATG+AGG | 0.523778 | 3.1:-40154974 | MS.gene064381:CDS |
ATGTTCTTATTTCTGACTGC+GGG | 0.524095 | 3.1:-40153069 | MS.gene064381:CDS |
ATCGAGTCCAAGAAAGCCAC+AGG | 0.524617 | 3.1:+40154710 | None:intergenic |
GGACTCGATTATTCTTGGAC+AGG | 0.524632 | 3.1:-40154696 | MS.gene064381:intron |
GGCATCTGAAGCCAATGCTC+GGG | 0.525201 | 3.1:-40152447 | MS.gene064381:CDS |
GAAGATGTTGAGTATTAAGA+GGG | 0.535650 | 3.1:-40155010 | None:intergenic |
GAGTATTAAGAGGGTTCCTA+CGG | 0.535658 | 3.1:-40155001 | MS.gene064381:CDS |
GATTGGGTTACAACAGCTTG+GGG | 0.540251 | 3.1:-40153463 | MS.gene064381:CDS |
TGCTCGGGAGCTTCTTGCCG+AGG | 0.545020 | 3.1:-40152432 | MS.gene064381:CDS |
TACGCAGAGAAACAAGCTCT+TGG | 0.546314 | 3.1:-40152566 | MS.gene064381:CDS |
CTCAAACACTAAGCCTGCTA+TGG | 0.552740 | 3.1:-40152297 | MS.gene064381:CDS |
GTGGACACATGGTGTTAAAG+AGG | 0.553568 | 3.1:-40152487 | MS.gene064381:CDS |
GCAGATACAGGCTTCAGAAA+CGG | 0.560153 | 3.1:+40153117 | None:intergenic |
AAACACTAAGCCTGCTATGG+TGG | 0.560336 | 3.1:-40152294 | MS.gene064381:CDS |
TTGTCAACTTGGAATTCAGT+TGG | 0.561917 | 3.1:+40154041 | None:intergenic |
TTACAAAAGGGGTGAGGCAA+AGG | 0.563078 | 3.1:-40154762 | MS.gene064381:CDS |
CCTTTGTATGGTTACAAAAG+GGG | 0.566646 | 3.1:-40154773 | MS.gene064381:CDS |
GAAGTGAAGATGATTAATAG+TGG | 0.576187 | 3.1:+40153433 | None:intergenic |
TTCGCGTGATCGATCCTTTG+GGG | 0.586652 | 3.1:+40153536 | None:intergenic |
CGCAAGTTAATCCAGCTGTG+TGG | 0.587802 | 3.1:-40152517 | MS.gene064381:CDS |
TTCTTATTTCTGACTGCGGG+AGG | 0.588058 | 3.1:-40153066 | MS.gene064381:CDS |
TCAACTTCCTCTAGACATTG+AGG | 0.588708 | 3.1:+40152329 | None:intergenic |
TTCATTGCTCAGCTGAACGA+GGG | 0.589336 | 3.1:-40154083 | MS.gene064381:CDS |
CATGGTGTTAAAGAGGAAGA+AGG | 0.590993 | 3.1:-40152480 | MS.gene064381:CDS |
AGGTTTCTCTCTCTAAAGAG+AGG | 0.595509 | 3.1:-40152412 | MS.gene064381:CDS |
CTCTTTAGAGAGAGAAACCT+CGG | 0.595723 | 3.1:+40152415 | None:intergenic |
GCAAGTTAATCCAGCTGTGT+GGG | 0.599673 | 3.1:-40152516 | MS.gene064381:CDS |
GGCAAACACTCGAAAATTCG+AGG | 0.606853 | 3.1:+40153557 | None:intergenic |
GTATGGTTACAAAAGGGGTG+AGG | 0.607885 | 3.1:-40154768 | MS.gene064381:CDS |
AGAGGTCTTGTCTTTGAGGG+TGG | 0.617352 | 3.1:-40153166 | MS.gene064381:CDS |
TTTCATTGCTCAGCTGAACG+AGG | 0.617448 | 3.1:-40154084 | MS.gene064381:CDS |
CCAGCTGTGTGGGAAATCAG+TGG | 0.621970 | 3.1:-40152506 | MS.gene064381:CDS |
TCAAAGACAAGACCTCTGAC+GGG | 0.628405 | 3.1:+40153172 | None:intergenic |
AACTGAATTCCAAGTTGACA+AGG | 0.629423 | 3.1:-40154039 | MS.gene064381:CDS |
TTGTTTGTTACTGAAGAACA+AGG | 0.630835 | 3.1:+40152255 | None:intergenic |
GAGGAAGAAGGACTTTGATG+AGG | 0.633378 | 3.1:-40152468 | MS.gene064381:CDS |
TTGTTGAACTATCCCGTCAG+AGG | 0.636208 | 3.1:-40153184 | MS.gene064381:CDS |
AAGATTGCCAAATTAAATGG+TGG | 0.637560 | 3.1:-40153223 | MS.gene064381:CDS |
AATGTTCTTATTTCTGACTG+CGG | 0.643366 | 3.1:-40153070 | MS.gene064381:CDS |
TGATAATTCGAAACAACCGT+AGG | 0.645029 | 3.1:+40154985 | None:intergenic |
CACAGGCAGTAACATCGTAA+CGG | 0.645185 | 3.1:+40154264 | None:intergenic |
GCAATGAAACCATACTCACC+CGG | 0.655955 | 3.1:+40154098 | None:intergenic |
TGCATGCAAGGAACGCCCTG+TGG | 0.656628 | 3.1:-40154726 | MS.gene064381:CDS |
TGTTACTGCCTGTGAAACCA+AGG | 0.656701 | 3.1:-40154255 | MS.gene064381:intron |
AGCACATGCCCATATTCGAT+AGG | 0.657099 | 3.1:+40153587 | None:intergenic |
GTGGGAAATCAGTGGACACA+TGG | 0.657940 | 3.1:-40152498 | MS.gene064381:CDS |
TGTCACACCTCAATGTCTAG+AGG | 0.670162 | 3.1:-40152336 | MS.gene064381:CDS |
ATTTGAGGCTAGCTGTGATG+GGG | 0.674110 | 3.1:-40153949 | MS.gene064381:CDS |
ATTGGGTTACAACAGCTTGG+GGG | 0.681884 | 3.1:-40153462 | MS.gene064381:CDS |
TGGGAGGATCGCATGCAGAG+AGG | 0.711970 | 3.1:-40154293 | MS.gene064381:CDS |
TCGAGTCCAAGAAAGCCACA+GGG | 0.731554 | 3.1:+40154711 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AGTTTTGATTATTTATTTAT+TGG | - | chr3.1:40152906-40152925 | MS.gene064381:intron | 10.0% |
!!! | ATAAGCAAAATTTTAATATT+TGG | - | chr3.1:40154269-40154288 | MS.gene064381:CDS | 10.0% |
!! | AATAATCAATGTAAACAATA+AGG | + | chr3.1:40153904-40153923 | None:intergenic | 15.0% |
!! | GTTTATATTATAATTACTAG+TGG | - | chr3.1:40153100-40153119 | MS.gene064381:CDS | 15.0% |
!! | TTTAAATTGCAGTATTTATT+CGG | - | chr3.1:40153463-40153482 | MS.gene064381:CDS | 15.0% |
!!! | TAATTGATTCTTAATTTGTT+TGG | + | chr3.1:40153873-40153892 | None:intergenic | 15.0% |
!!! | TTATTGTTTACATTGATTAT+TGG | - | chr3.1:40153903-40153922 | MS.gene064381:CDS | 15.0% |
!!! | TTGTTTTTGTTTTTGAATTA+TGG | - | chr3.1:40152414-40152433 | MS.gene064381:CDS | 15.0% |
!!! | TTTGAGTTTTGAATTTTTTA+TGG | - | chr3.1:40152947-40152966 | MS.gene064381:intron | 15.0% |
!! | AAATTCAATTTCACTAAAGT+TGG | - | chr3.1:40153275-40153294 | MS.gene064381:intron | 20.0% |
!! | AACTTTAGTGAAATTGAATT+TGG | + | chr3.1:40153276-40153295 | None:intergenic | 20.0% |
!! | AATAAACTATGTAGTACAAA+TGG | + | chr3.1:40154485-40154504 | None:intergenic | 20.0% |
!! | ATATTCTGATACTTCATATT+GGG | - | chr3.1:40153488-40153507 | MS.gene064381:CDS | 20.0% |
!! | TAAAAAATTTCGGATTATCA+AGG | + | chr3.1:40154309-40154328 | None:intergenic | 20.0% |
!! | TATATTCTGATACTTCATAT+TGG | - | chr3.1:40153487-40153506 | MS.gene064381:CDS | 20.0% |
!! | TATATTTATCTTTGTCATGT+TGG | - | chr3.1:40152825-40152844 | MS.gene064381:intron | 20.0% |
!!! | ATCCGAAATTTTTTAATTTG+TGG | - | chr3.1:40154314-40154333 | MS.gene064381:intron | 20.0% |
!!! | TAATTTAAAACAATGCTTGA+TGG | - | chr3.1:40153598-40153617 | MS.gene064381:intron | 20.0% |
!!! | TCCGAAATTTTTTAATTTGT+GGG | - | chr3.1:40154315-40154334 | MS.gene064381:intron | 20.0% |
!!! | TGTTTGTGATTTGATTTTTA+AGG | - | chr3.1:40152383-40152402 | MS.gene064381:CDS | 20.0% |
! | AAGAAGATTGCCAAATTAAA+TGG | - | chr3.1:40154042-40154061 | MS.gene064381:CDS | 25.0% |
! | AATCAATGTAAACAATAAGG+TGG | + | chr3.1:40153901-40153920 | None:intergenic | 25.0% |
! | ACAAATTCAGGCATATTATT+TGG | - | chr3.1:40153987-40154006 | MS.gene064381:CDS | 25.0% |
! | CATAACCATCAATGATATAT+CGG | + | chr3.1:40152882-40152901 | None:intergenic | 25.0% |
! | CCCCACAAATTAAAAAATTT+CGG | + | chr3.1:40154319-40154338 | None:intergenic | 25.0% |
! | TACAAATGGTTGTCAAATAA+CGG | + | chr3.1:40154471-40154490 | None:intergenic | 25.0% |
! | TATTCTGATACTTCATATTG+GGG | - | chr3.1:40153489-40153508 | MS.gene064381:CDS | 25.0% |
! | TCAGAAATAAGAACATTGTA+AGG | + | chr3.1:40154195-40154214 | None:intergenic | 25.0% |
! | TGTTTATTTACTCGATTAAC+AGG | - | chr3.1:40153653-40153672 | MS.gene064381:intron | 25.0% |
!! | AAATATTGATTGTGCAATCA+AGG | + | chr3.1:40154651-40154670 | None:intergenic | 25.0% |
!! | AGGTAGTTATCGAATTTTTA+TGG | - | chr3.1:40152592-40152611 | MS.gene064381:intron | 25.0% |
!! | ATTGAATTTGGTTTCATCAA+AGG | + | chr3.1:40153264-40153283 | None:intergenic | 25.0% |
!! | TTCTGATTTTTGACAAATTC+AGG | - | chr3.1:40153975-40153994 | MS.gene064381:CDS | 25.0% |
!! | TTGAATTTGGTTTCATCAAA+GGG | + | chr3.1:40153263-40153282 | None:intergenic | 25.0% |
!!! | ATCGATTTTTTCAGATGTAA+TGG | + | chr3.1:40154913-40154932 | None:intergenic | 25.0% |
!!! | ATTATAATTACTAGTGGACT+TGG | - | chr3.1:40153106-40153125 | MS.gene064381:CDS | 25.0% |
!!! | CACTGTTTTTCAATTTGTAT+TGG | + | chr3.1:40154681-40154700 | None:intergenic | 25.0% |
!!! | CCGAAATTTTTTAATTTGTG+GGG | - | chr3.1:40154316-40154335 | MS.gene064381:intron | 25.0% |
!!! | TGAATTTTTTATGGTGTAGT+GGG | - | chr3.1:40152956-40152975 | MS.gene064381:intron | 25.0% |
!!! | TGTGTTTTTTTGGTTAATAG+AGG | - | chr3.1:40152464-40152483 | MS.gene064381:CDS | 25.0% |
!!! | TTGAATTTTTTATGGTGTAG+TGG | - | chr3.1:40152955-40152974 | MS.gene064381:intron | 25.0% |
!!! | TTGTTGTTGTTGTGTTTTTT+TGG | - | chr3.1:40152454-40152473 | MS.gene064381:CDS | 25.0% |
AAGATTGCCAAATTAAATGG+TGG | - | chr3.1:40154045-40154064 | MS.gene064381:CDS | 30.0% | |
AAGATTTCAAGCAACTAAAG+AGG | + | chr3.1:40154625-40154644 | None:intergenic | 30.0% | |
ACTAGTGTTATCAATATTCG+CGG | - | chr3.1:40154401-40154420 | MS.gene064381:intron | 30.0% | |
AGATTTCAAGCAACTAAAGA+GGG | + | chr3.1:40154624-40154643 | None:intergenic | 30.0% | |
ATCAAGGATTACGATTTAAG+AGG | + | chr3.1:40154342-40154361 | None:intergenic | 30.0% | |
ATCCGATAAACATACATTGA+TGG | + | chr3.1:40153402-40153421 | None:intergenic | 30.0% | |
ATTTGTTTGGTTAAGATACC+TGG | + | chr3.1:40153860-40153879 | None:intergenic | 30.0% | |
CTGAAAAACTAATTTACCTG+TGG | + | chr3.1:40154243-40154262 | None:intergenic | 30.0% | |
GAAGTGAAGATGATTAATAG+TGG | + | chr3.1:40153838-40153857 | None:intergenic | 30.0% | |
TAAATACTGGATATAGAAGC+AGG | + | chr3.1:40154555-40154574 | None:intergenic | 30.0% | |
TATCCAGTATTTAACAACAC+TGG | - | chr3.1:40154562-40154581 | MS.gene064381:intron | 30.0% | |
TATTAATCATCTTCACTTCC+AGG | - | chr3.1:40153839-40153858 | MS.gene064381:intron | 30.0% | |
TCCTTTGTATGGTTACAAAA+GGG | - | chr3.1:40152494-40152513 | MS.gene064381:CDS | 30.0% | |
TGCCATCAATGTATGTTTAT+CGG | - | chr3.1:40153397-40153416 | MS.gene064381:intron | 30.0% | |
TTCCTTTGTATGGTTACAAA+AGG | - | chr3.1:40152493-40152512 | MS.gene064381:CDS | 30.0% | |
TTCGAATTATCAAAAGGATG+AGG | - | chr3.1:40152294-40152313 | MS.gene064381:CDS | 30.0% | |
TTTCACACCACCATTTAATT+TGG | + | chr3.1:40154055-40154074 | None:intergenic | 30.0% | |
! | ATCACGTTTTCATTCATTGT+TGG | + | chr3.1:40153954-40153973 | None:intergenic | 30.0% |
! | CTTGATAATCTAGTCAAATG+CGG | - | chr3.1:40154356-40154375 | MS.gene064381:intron | 30.0% |
! | GGTTGTTTCGAATTATCAAA+AGG | - | chr3.1:40152288-40152307 | MS.gene064381:CDS | 30.0% |
!! | AATGTTCTTATTTCTGACTG+CGG | - | chr3.1:40154198-40154217 | MS.gene064381:intron | 30.0% |
!!! | ACGTTTTAGAAACTTGAGTA+TGG | - | chr3.1:40152729-40152748 | MS.gene064381:intron | 30.0% |
!!! | GTATGTGTGGTTTTTTTTGT+TGG | - | chr3.1:40153135-40153154 | MS.gene064381:CDS | 30.0% |
AAGGTATGTTGTTGTGTTGA+AGG | + | chr3.1:40154176-40154195 | None:intergenic | 35.0% | |
ACGGTTATAGTACTATTGTG+TGG | + | chr3.1:40154452-40154471 | None:intergenic | 35.0% | |
AGAGATCCTATTCCAATTTG+AGG | - | chr3.1:40153304-40153323 | MS.gene064381:intron | 35.0% | |
AGGAAATCCATATTTCCGAT+TGG | - | chr3.1:40153788-40153807 | MS.gene064381:intron | 35.0% | |
CATTGTTGGAACACTAGATA+AGG | + | chr3.1:40153940-40153959 | None:intergenic | 35.0% | |
CCTTTGTATGGTTACAAAAG+GGG | - | chr3.1:40152495-40152514 | MS.gene064381:CDS | 35.0% | |
CGCATTTGACTAGATTATCA+AGG | + | chr3.1:40154358-40154377 | None:intergenic | 35.0% | |
CTCAAGAGTTGTTGTATTCA+AGG | - | chr3.1:40152349-40152368 | MS.gene064381:CDS | 35.0% | |
GGAAATCCATATTTCCGATT+GGG | - | chr3.1:40153789-40153808 | MS.gene064381:intron | 35.0% | |
GGAGAATTCTCAACATCAAT+TGG | + | chr3.1:40153368-40153387 | None:intergenic | 35.0% | |
GGATTATCAAGGATTGTAAG+AGG | + | chr3.1:40154298-40154317 | None:intergenic | 35.0% | |
TCAATATTCGCGGAAAATAG+CGG | - | chr3.1:40154411-40154430 | MS.gene064381:intron | 35.0% | |
TGATAATTCGAAACAACCGT+AGG | + | chr3.1:40152286-40152305 | None:intergenic | 35.0% | |
TTAGTAGAAGCCTTCTCAAT+TGG | + | chr3.1:40154024-40154043 | None:intergenic | 35.0% | |
TTATCAAGGATTGTAAGAGG+CGG | + | chr3.1:40154295-40154314 | None:intergenic | 35.0% | |
TTCTTGGACTCGATTATTCT+TGG | - | chr3.1:40152567-40152586 | MS.gene064381:CDS | 35.0% | |
TTGTAACCCAATCGGAAATA+TGG | + | chr3.1:40153798-40153817 | None:intergenic | 35.0% | |
TTGTCAACTTGGAATTCAGT+TGG | + | chr3.1:40153230-40153249 | None:intergenic | 35.0% | |
TTTAACAACACTGGATGTCA+TGG | - | chr3.1:40154571-40154590 | MS.gene064381:intron | 35.0% | |
! | AACTGAATTCCAAGTTGACA+AGG | - | chr3.1:40153229-40153248 | MS.gene064381:CDS | 35.0% |
! | AGGTTAGTCCTATCGAATAT+GGG | - | chr3.1:40153673-40153692 | MS.gene064381:intron | 35.0% |
! | CATCCAGTGTTGTTAAATAC+TGG | + | chr3.1:40154568-40154587 | None:intergenic | 35.0% |
!! | AAGTGCCGATATATCATTGA+TGG | - | chr3.1:40152874-40152893 | MS.gene064381:intron | 35.0% |
!! | ATGTTCTTATTTCTGACTGC+GGG | - | chr3.1:40154199-40154218 | MS.gene064381:intron | 35.0% |
!! | TCTTTTTGTCGTTTAGTGCA+TGG | - | chr3.1:40153439-40153458 | MS.gene064381:CDS | 35.0% |
!!! | ATTTTTTATGGTGTAGTGGG+AGG | - | chr3.1:40152959-40152978 | MS.gene064381:intron | 35.0% |
!!! | TGGTTTTTTTTGTTGGTGGT+AGG | - | chr3.1:40153142-40153161 | MS.gene064381:CDS | 35.0% |
!!! | TGTGTGGTTTTTTTTGTTGG+TGG | - | chr3.1:40153138-40153157 | MS.gene064381:CDS | 35.0% |
AAATTGCAGCCGCAATGTAA+GGG | + | chr3.1:40153564-40153583 | None:intergenic | 40.0% | |
ATAGAGAGAGATTCAGACCT+TGG | + | chr3.1:40153033-40153052 | None:intergenic | 40.0% | |
GAAGCCTTCTCAATTGGAAA+AGG | + | chr3.1:40154018-40154037 | None:intergenic | 40.0% | |
GAGGGTTATAAGATAGTCTG+AGG | + | chr3.1:40154606-40154625 | None:intergenic | 40.0% | |
GAGTATTAAGAGGGTTCCTA+CGG | - | chr3.1:40152267-40152286 | MS.gene064381:CDS | 40.0% | |
GGTCACCTATGAAGTATAGA+CGG | - | chr3.1:40152613-40152632 | MS.gene064381:intron | 40.0% | |
GTCAACGTCAGTGTTATGTT+CGG | + | chr3.1:40152758-40152777 | None:intergenic | 40.0% | |
GTTTGCCGTCTATACTTCAT+AGG | + | chr3.1:40152621-40152640 | None:intergenic | 40.0% | |
TCAACTTCCTCTAGACATTG+AGG | + | chr3.1:40154942-40154961 | None:intergenic | 40.0% | |
TTTCGTCCACAACCATTAAC+AGG | + | chr3.1:40152325-40152344 | None:intergenic | 40.0% | |
! | AATTTGAGGCTAGCTGTGAT+GGG | - | chr3.1:40153318-40153337 | MS.gene064381:intron | 40.0% |
! | ACATTGATGGCAACAAAGCT+TGG | + | chr3.1:40153389-40153408 | None:intergenic | 40.0% |
! | AGCTAGCCTCAAATTGGAAT+AGG | + | chr3.1:40153313-40153332 | None:intergenic | 40.0% |
! | AGGTTTCTCTCTCTAAAGAG+AGG | - | chr3.1:40154856-40154875 | MS.gene064381:intron | 40.0% |
! | ATTCAGTTGGTCTCTTCTTG+AGG | + | chr3.1:40153217-40153236 | None:intergenic | 40.0% |
! | ATTTGGTTTCATCAAAGGGC+TGG | + | chr3.1:40153259-40153278 | None:intergenic | 40.0% |
! | CAGGTTAGTCCTATCGAATA+TGG | - | chr3.1:40153672-40153691 | MS.gene064381:intron | 40.0% |
! | CATGGTGTTAAAGAGGAAGA+AGG | - | chr3.1:40154788-40154807 | MS.gene064381:intron | 40.0% |
! | CCCCTTTTGTAACCATACAA+AGG | + | chr3.1:40152498-40152517 | None:intergenic | 40.0% |
! | CTCTTTAGAGAGAGAAACCT+CGG | + | chr3.1:40154856-40154875 | None:intergenic | 40.0% |
! | GCTTGATGGTTCAGTTGAAT+AGG | - | chr3.1:40153612-40153631 | MS.gene064381:intron | 40.0% |
! | TCTGCCTTTTCCAATTGAGA+AGG | - | chr3.1:40154011-40154030 | MS.gene064381:CDS | 40.0% |
! | TGATAACACTAGTGCCACTA+AGG | + | chr3.1:40154394-40154413 | None:intergenic | 40.0% |
! | TTTTTCGCTTGCACTTCACA+TGG | - | chr3.1:40153755-40153774 | MS.gene064381:intron | 40.0% |
!! | AGCAGGAAAGTGCTATATCA+TGG | + | chr3.1:40154538-40154557 | None:intergenic | 40.0% |
!! | AGGAAAGTGCTATATCATGG+TGG | + | chr3.1:40154535-40154554 | None:intergenic | 40.0% |
AAACACTAAGCCTGCTATGG+TGG | - | chr3.1:40154974-40154993 | MS.gene064381:CDS | 45.0% | |
AATTCGCGTGATCGATCCTT+TGG | + | chr3.1:40153737-40153756 | None:intergenic | 45.0% | |
AGCACATGCCCATATTCGAT+AGG | + | chr3.1:40153684-40153703 | None:intergenic | 45.0% | |
ATTCGCGTGATCGATCCTTT+GGG | + | chr3.1:40153736-40153755 | None:intergenic | 45.0% | |
ATTGGGTTACAACAGCTTGG+GGG | - | chr3.1:40153806-40153825 | MS.gene064381:intron | 45.0% | |
CAAATTGCAGCCGCAATGTA+AGG | + | chr3.1:40153565-40153584 | None:intergenic | 45.0% | |
CACAGGCAGTAACATCGTAA+CGG | + | chr3.1:40153007-40153026 | None:intergenic | 45.0% | |
CCAAGCTGTTGTAACCCAAT+CGG | + | chr3.1:40153806-40153825 | None:intergenic | 45.0% | |
CCATAGTTTATGTCGCGATG+CGG | - | chr3.1:40153521-40153540 | MS.gene064381:CDS | 45.0% | |
CCTCCAAAACCCTTACATTG+CGG | - | chr3.1:40153552-40153571 | MS.gene064381:CDS | 45.0% | |
CGATTGGGTTACAACAGCTT+GGG | - | chr3.1:40153804-40153823 | MS.gene064381:intron | 45.0% | |
CTCAAACACTAAGCCTGCTA+TGG | - | chr3.1:40154971-40154990 | MS.gene064381:CDS | 45.0% | |
CTCAAAGACAAGACCTCTGA+CGG | + | chr3.1:40154100-40154119 | None:intergenic | 45.0% | |
GACGTTGACACATACAGCTA+TGG | - | chr3.1:40152769-40152788 | MS.gene064381:intron | 45.0% | |
GAGGAAGAAGGACTTTGATG+AGG | - | chr3.1:40154800-40154819 | MS.gene064381:intron | 45.0% | |
GATGAGGATGCTCCTGTTAA+TGG | - | chr3.1:40152310-40152329 | MS.gene064381:CDS | 45.0% | |
GATGCTCCTGTTAATGGTTG+TGG | - | chr3.1:40152316-40152335 | MS.gene064381:CDS | 45.0% | |
GATTCAGACCTTGGTTTCAC+AGG | + | chr3.1:40153024-40153043 | None:intergenic | 45.0% | |
GATTGGGTTACAACAGCTTG+GGG | - | chr3.1:40153805-40153824 | MS.gene064381:intron | 45.0% | |
GCAAGTTAATCCAGCTGTGT+GGG | - | chr3.1:40154752-40154771 | MS.gene064381:CDS | 45.0% | |
GCAATGAAACCATACTCACC+CGG | + | chr3.1:40153173-40153192 | None:intergenic | 45.0% | |
GCAGATACAGGCTTCAGAAA+CGG | + | chr3.1:40154154-40154173 | None:intergenic | 45.0% | |
GGACTCGATTATTCTTGGAC+AGG | - | chr3.1:40152572-40152591 | MS.gene064381:CDS | 45.0% | |
GGCAAACACTCGAAAATTCG+AGG | + | chr3.1:40153714-40153733 | None:intergenic | 45.0% | |
GTATGGTTACAAAAGGGGTG+AGG | - | chr3.1:40152500-40152519 | MS.gene064381:CDS | 45.0% | |
GTCATGTTGGCGTTAGAAAC+TGG | - | chr3.1:40152838-40152857 | MS.gene064381:intron | 45.0% | |
GTTGTGTTGAAGGCAGATAC+AGG | + | chr3.1:40154166-40154185 | None:intergenic | 45.0% | |
TACATTGCGGCTGCAATTTG+CGG | - | chr3.1:40153565-40153584 | MS.gene064381:CDS | 45.0% | |
TACGCAGAGAAACAAGCTCT+TGG | - | chr3.1:40154702-40154721 | MS.gene064381:CDS | 45.0% | |
TCAAAGACAAGACCTCTGAC+GGG | + | chr3.1:40154099-40154118 | None:intergenic | 45.0% | |
TGCCACTAAGGTTGTGTTTG+AGG | + | chr3.1:40154382-40154401 | None:intergenic | 45.0% | |
TGTCACACCTCAATGTCTAG+AGG | - | chr3.1:40154932-40154951 | MS.gene064381:CDS | 45.0% | |
TGTTACTGCCTGTGAAACCA+AGG | - | chr3.1:40153013-40153032 | MS.gene064381:intron | 45.0% | |
TTACAAAAGGGGTGAGGCAA+AGG | - | chr3.1:40152506-40152525 | MS.gene064381:CDS | 45.0% | |
TTCATTGCTCAGCTGAACGA+GGG | - | chr3.1:40153185-40153204 | MS.gene064381:CDS | 45.0% | |
TTGTTGAACTATCCCGTCAG+AGG | - | chr3.1:40154084-40154103 | MS.gene064381:CDS | 45.0% | |
TTTCATTGCTCAGCTGAACG+AGG | - | chr3.1:40153184-40153203 | MS.gene064381:CDS | 45.0% | |
! | ATTTGAGGCTAGCTGTGATG+GGG | - | chr3.1:40153319-40153338 | MS.gene064381:intron | 45.0% |
! | CAATTTGAGGCTAGCTGTGA+TGG | - | chr3.1:40153317-40153336 | MS.gene064381:intron | 45.0% |
! | CATCACAGCTAGCCTCAAAT+TGG | + | chr3.1:40153319-40153338 | None:intergenic | 45.0% |
! | GACTTGGTCTCATGTATGTG+TGG | - | chr3.1:40153122-40153141 | MS.gene064381:CDS | 45.0% |
! | GCGAGTTTTTCTCTTACCAC+AGG | - | chr3.1:40154224-40154243 | MS.gene064381:intron | 45.0% |
! | GTCAGAGGTCTTGTCTTTGA+GGG | - | chr3.1:40154099-40154118 | MS.gene064381:CDS | 45.0% |
! | GTGGACACATGGTGTTAAAG+AGG | - | chr3.1:40154781-40154800 | MS.gene064381:CDS | 45.0% |
!! | TTCTTATTTCTGACTGCGGG+AGG | - | chr3.1:40154202-40154221 | MS.gene064381:intron | 45.0% |
!! | TTGTTGGTGGTAGGTGATTC+CGG | - | chr3.1:40153151-40153170 | MS.gene064381:CDS | 45.0% |
!!! | TTTTCGAGTGTTTGCCCCAA+AGG | - | chr3.1:40153718-40153737 | MS.gene064381:intron | 45.0% |
ATCGAGTCCAAGAAAGCCAC+AGG | + | chr3.1:40152561-40152580 | None:intergenic | 50.0% | |
CCGATTGGGTTACAACAGCT+TGG | - | chr3.1:40153803-40153822 | MS.gene064381:intron | 50.0% | |
CCGCATCGCGACATAAACTA+TGG | + | chr3.1:40153524-40153543 | None:intergenic | 50.0% | |
CGCAAGTTAATCCAGCTGTG+TGG | - | chr3.1:40154751-40154770 | MS.gene064381:CDS | 50.0% | |
CTCAACATCAATTGGCGCGT+CGG | + | chr3.1:40153360-40153379 | None:intergenic | 50.0% | |
CTTGTCTCCCATTGCATGCA+AGG | - | chr3.1:40152530-40152549 | MS.gene064381:CDS | 50.0% | |
GAGGCGAAGCTTCCTTTGTA+TGG | - | chr3.1:40152483-40152502 | MS.gene064381:CDS | 50.0% | |
GCTGGAGAACCTTGTCAACT+TGG | + | chr3.1:40153241-40153260 | None:intergenic | 50.0% | |
GGCCTCAAACACAACCTTAG+TGG | - | chr3.1:40154377-40154396 | MS.gene064381:intron | 50.0% | |
GTGGGAAATCAGTGGACACA+TGG | - | chr3.1:40154770-40154789 | MS.gene064381:CDS | 50.0% | |
TAGGTGATTCCGGGTGAGTA+TGG | - | chr3.1:40153161-40153180 | MS.gene064381:CDS | 50.0% | |
TCAACATCAATTGGCGCGTC+GGG | + | chr3.1:40153359-40153378 | None:intergenic | 50.0% | |
TCGAGTCCAAGAAAGCCACA+GGG | + | chr3.1:40152560-40152579 | None:intergenic | 50.0% | |
TTCGCGTGATCGATCCTTTG+GGG | + | chr3.1:40153735-40153754 | None:intergenic | 50.0% | |
! | AGAGGTCTTGTCTTTGAGGG+TGG | - | chr3.1:40154102-40154121 | MS.gene064381:CDS | 50.0% |
! | AGGCATCTGAAGCCAATGCT+CGG | - | chr3.1:40154820-40154839 | MS.gene064381:intron | 50.0% |
! | CAGCCGCAATGTAAGGGTTT+TGG | + | chr3.1:40153558-40153577 | None:intergenic | 50.0% |
! | CGTCAGAGGTCTTGTCTTTG+AGG | - | chr3.1:40154098-40154117 | MS.gene064381:CDS | 50.0% |
!! | CCGCAATGTAAGGGTTTTGG+AGG | + | chr3.1:40153555-40153574 | None:intergenic | 50.0% |
!! | TGTTGGTGGTAGGTGATTCC+GGG | - | chr3.1:40153152-40153171 | MS.gene064381:CDS | 50.0% |
ACTAAGCCTGCTATGGTGGC+TGG | - | chr3.1:40154978-40154997 | MS.gene064381:CDS | 55.0% | |
CCAGCTGTGTGGGAAATCAG+TGG | - | chr3.1:40154762-40154781 | MS.gene064381:CDS | 55.0% | |
CTTCACATGGCAGCTGAAGC+AGG | - | chr3.1:40153768-40153787 | MS.gene064381:intron | 55.0% | |
GGGCGTTCCTTGCATGCAAT+GGG | + | chr3.1:40152540-40152559 | None:intergenic | 55.0% | |
TGGCGCGTCGGGAAAGAATT+GGG | + | chr3.1:40153348-40153367 | None:intergenic | 55.0% | |
TTGGCGCGTCGGGAAAGAAT+TGG | + | chr3.1:40153349-40153368 | None:intergenic | 55.0% | |
! | AGAAGTGCGTGCTGAGCTTC+TGG | - | chr3.1:40154725-40154744 | MS.gene064381:CDS | 55.0% |
! | AGGGCGTTCCTTGCATGCAA+TGG | + | chr3.1:40152541-40152560 | None:intergenic | 55.0% |
! | CTTTGAGGGTGGTCATGCAC+TGG | - | chr3.1:40154113-40154132 | MS.gene064381:intron | 55.0% |
! | GGCATCTGAAGCCAATGCTC+GGG | - | chr3.1:40154821-40154840 | MS.gene064381:intron | 55.0% |
!! | CCACTGATTTCCCACACAGC+TGG | + | chr3.1:40154765-40154784 | None:intergenic | 55.0% |
GGAACGCCCTGTGGCTTTCT+TGG | - | chr3.1:40152551-40152570 | MS.gene064381:CDS | 60.0% | |
GGCAAGAAGCTCCCGAGCAT+TGG | + | chr3.1:40154835-40154854 | None:intergenic | 60.0% | |
TGCATGCAAGGAACGCCCTG+TGG | - | chr3.1:40152542-40152561 | MS.gene064381:CDS | 60.0% | |
TGCGAACCAGCCACCATAGC+AGG | + | chr3.1:40154987-40155006 | None:intergenic | 60.0% | |
TGGGAGGATCGCATGCAGAG+AGG | - | chr3.1:40152975-40152994 | MS.gene064381:intron | 60.0% | |
TGCTCGGGAGCTTCTTGCCG+AGG | - | chr3.1:40154836-40154855 | MS.gene064381:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.1 | gene | 40152262 | 40155028 | 40152262 | ID=MS.gene064381 |
chr3.1 | mRNA | 40152262 | 40155028 | 40152262 | ID=MS.gene064381.t1;Parent=MS.gene064381 |
chr3.1 | exon | 40154920 | 40155028 | 40154920 | ID=MS.gene064381.t1.exon1;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40154920 | 40155028 | 40154920 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40154697 | 40154806 | 40154697 | ID=MS.gene064381.t1.exon2;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40154697 | 40154806 | 40154697 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40154256 | 40154315 | 40154256 | ID=MS.gene064381.t1.exon3;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40154256 | 40154315 | 40154256 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40153884 | 40154126 | 40153884 | ID=MS.gene064381.t1.exon4;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40153884 | 40154126 | 40153884 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40153430 | 40153615 | 40153430 | ID=MS.gene064381.t1.exon5;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40153430 | 40153615 | 40153430 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40153045 | 40153293 | 40153045 | ID=MS.gene064381.t1.exon6;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40153045 | 40153293 | 40153045 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
chr3.1 | exon | 40152262 | 40152591 | 40152262 | ID=MS.gene064381.t1.exon7;Parent=MS.gene064381.t1 |
chr3.1 | CDS | 40152262 | 40152591 | 40152262 | ID=cds.MS.gene064381.t1;Parent=MS.gene064381.t1 |
Gene Sequence |
Protein sequence |