Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052641.t1 | XP_003601141.2 | 98.8 | 577 | 5 | 1 | 1 | 575 | 1 | 577 | 0.00E+00 | 1167.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052641.t1 | Q84WV0 | 74.3 | 501 | 117 | 3 | 83 | 571 | 91 | 591 | 3.2e-221 | 769.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052641.t1 | G7J467 | 98.8 | 577 | 5 | 1 | 1 | 575 | 1 | 577 | 0.0e+00 | 1167.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052641 | MS.gene055505 | 0.822902 | 1.85E-53 | -1.69E-46 |
| MS.gene052641 | MS.gene057199 | 0.826808 | 2.21E-54 | -1.69E-46 |
| MS.gene052641 | MS.gene064381 | 0.817872 | 2.63E-52 | -1.69E-46 |
| MS.gene052641 | MS.gene06652 | 0.817997 | 2.47E-52 | -1.69E-46 |
| MS.gene052641 | MS.gene06866 | 0.816674 | 4.90E-52 | -1.69E-46 |
| MS.gene052641 | MS.gene21049 | 0.818807 | 1.62E-52 | -1.69E-46 |
| MS.gene052641 | MS.gene22970 | 0.841557 | 4.42E-58 | -1.69E-46 |
| MS.gene052641 | MS.gene28654 | 0.842901 | 1.95E-58 | -1.69E-46 |
| MS.gene052641 | MS.gene29003 | 0.859577 | 3.76E-63 | -1.69E-46 |
| MS.gene052641 | MS.gene29033 | 0.998426 | 1.02E-264 | -1.69E-46 |
| MS.gene052641 | MS.gene30747 | 0.970263 | 2.37E-131 | -1.69E-46 |
| MS.gene052641 | MS.gene35639 | 0.985606 | 4.31E-164 | -1.69E-46 |
| MS.gene052641 | MS.gene37486 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene052641 | MS.gene39313 | 0.825905 | 3.63E-54 | -1.69E-46 |
| MS.gene052641 | MS.gene40755 | 0.805517 | 1.28E-49 | -1.69E-46 |
| MS.gene052641 | MS.gene72142 | 0.811193 | 7.91E-51 | -1.69E-46 |
| MS.gene052641 | MS.gene77215 | 0.847052 | 1.48E-59 | -1.69E-46 |
| MS.gene052641 | MS.gene91190 | 0.813598 | 2.36E-51 | -1.69E-46 |
| MS.gene052641 | MS.gene92043 | 0.801796 | 7.60E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052641.t1 | MTR_3g073470 | 98.787 | 577 | 5 | 1 | 1 | 575 | 1 | 577 | 0.0 | 1191 |
| MS.gene052641.t1 | MTR_2g006570 | 68.070 | 570 | 153 | 7 | 28 | 574 | 29 | 592 | 0.0 | 794 |
| MS.gene052641.t1 | MTR_2g006570 | 77.435 | 421 | 92 | 1 | 157 | 574 | 1 | 421 | 0.0 | 700 |
| MS.gene052641.t1 | MTR_3g084310 | 64.208 | 461 | 157 | 2 | 116 | 573 | 7 | 462 | 0.0 | 632 |
| MS.gene052641.t1 | MTR_8g081510 | 63.774 | 461 | 159 | 2 | 116 | 573 | 7 | 462 | 0.0 | 627 |
| MS.gene052641.t1 | MTR_3g084310 | 66.209 | 364 | 118 | 1 | 116 | 479 | 7 | 365 | 0.0 | 521 |
| MS.gene052641.t1 | MTR_5g030950 | 53.079 | 471 | 203 | 6 | 114 | 573 | 46 | 509 | 2.84e-169 | 491 |
| MS.gene052641.t1 | MTR_5g067060 | 52.371 | 464 | 206 | 5 | 118 | 573 | 42 | 498 | 5.81e-169 | 489 |
| MS.gene052641.t1 | MTR_2g018290 | 50.000 | 464 | 202 | 6 | 121 | 572 | 87 | 532 | 1.04e-157 | 462 |
| MS.gene052641.t1 | MTR_7g108420 | 42.438 | 443 | 206 | 9 | 146 | 573 | 1 | 409 | 2.15e-103 | 318 |
| MS.gene052641.t1 | MTR_7g012360 | 92.063 | 63 | 5 | 0 | 15 | 77 | 1 | 63 | 2.31e-33 | 122 |
| MS.gene052641.t1 | MTR_2g438370 | 84.058 | 69 | 9 | 1 | 53 | 119 | 2 | 70 | 2.28e-32 | 120 |
| MS.gene052641.t1 | MTR_2g438370 | 85.000 | 40 | 6 | 0 | 236 | 275 | 65 | 104 | 3.33e-15 | 72.0 |
| MS.gene052641.t1 | MTR_7g017460 | 90.323 | 62 | 6 | 0 | 15 | 76 | 1 | 62 | 3.54e-31 | 117 |
| MS.gene052641.t1 | MTR_7g090490 | 91.803 | 61 | 5 | 0 | 15 | 75 | 1 | 61 | 1.21e-26 | 103 |
| MS.gene052641.t1 | MTR_1g073580 | 43.182 | 88 | 45 | 2 | 266 | 353 | 1 | 83 | 4.67e-17 | 81.6 |
| MS.gene052641.t1 | MTR_3g062030 | 44.156 | 77 | 39 | 1 | 388 | 464 | 13 | 85 | 1.71e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052641.t1 | AT1G22020 | 65.882 | 595 | 179 | 8 | 3 | 574 | 5 | 598 | 0.0 | 780 |
| MS.gene052641.t1 | AT1G22020 | 65.882 | 595 | 179 | 8 | 3 | 574 | 5 | 598 | 0.0 | 780 |
| MS.gene052641.t1 | AT1G36370 | 65.932 | 590 | 178 | 7 | 3 | 572 | 6 | 592 | 0.0 | 767 |
| MS.gene052641.t1 | AT4G13930 | 63.636 | 462 | 160 | 2 | 115 | 573 | 6 | 462 | 0.0 | 620 |
| MS.gene052641.t1 | AT4G13890 | 62.338 | 462 | 166 | 2 | 115 | 573 | 6 | 462 | 0.0 | 605 |
| MS.gene052641.t1 | AT4G13890 | 63.683 | 391 | 134 | 2 | 115 | 502 | 6 | 391 | 0.0 | 528 |
| MS.gene052641.t1 | AT4G37930 | 52.708 | 480 | 206 | 7 | 108 | 573 | 36 | 508 | 6.29e-173 | 500 |
| MS.gene052641.t1 | AT4G32520 | 51.116 | 493 | 217 | 5 | 89 | 572 | 51 | 528 | 4.06e-171 | 496 |
| MS.gene052641.t1 | AT4G32520 | 51.116 | 493 | 217 | 5 | 89 | 572 | 51 | 528 | 4.06e-171 | 496 |
| MS.gene052641.t1 | AT5G26780 | 52.802 | 464 | 204 | 5 | 118 | 573 | 52 | 508 | 8.17e-168 | 487 |
| MS.gene052641.t1 | AT5G26780 | 52.802 | 464 | 204 | 5 | 118 | 573 | 52 | 508 | 8.17e-168 | 487 |
| MS.gene052641.t1 | AT5G26780 | 51.042 | 480 | 204 | 6 | 118 | 573 | 52 | 524 | 1.52e-163 | 477 |
| MS.gene052641.t1 | AT5G26780 | 51.042 | 480 | 204 | 6 | 118 | 573 | 52 | 524 | 1.52e-163 | 477 |
Find 128 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAATAAGTGTGCCATTTA+TGG | 0.063511 | 3.2:+66321321 | MS.gene052641:CDS |
| TTGATCTTGATTCAAGTAAT+TGG | 0.153213 | 3.2:+66318124 | MS.gene052641:CDS |
| GAATCCTGGTGATAGGATTA+TGG | 0.192344 | 3.2:+66318209 | MS.gene052641:CDS |
| ATAACTGCACTCGGTTTAAT+TGG | 0.195295 | 3.2:+66320127 | MS.gene052641:CDS |
| TCCTGAAATATTTACTATTA+TGG | 0.200046 | 3.2:+66317903 | MS.gene052641:CDS |
| AAGCCTTGCTTCCTTGGTTT+TGG | 0.211435 | 3.2:-66319842 | None:intergenic |
| TCCATAATAGTAAATATTTC+AGG | 0.234594 | 3.2:-66317904 | None:intergenic |
| GAAAAGTTGAGACAGTTTAA+AGG | 0.290864 | 3.2:+66317931 | MS.gene052641:CDS |
| AATGGGATTATGCGAGGTTT+AGG | 0.290968 | 3.2:+66318439 | MS.gene052641:CDS |
| AACCAAACCCTTCTCTTTCA+TGG | 0.293598 | 3.2:+66317641 | MS.gene052641:CDS |
| TGATCTTGATTCAAGTAATT+GGG | 0.295376 | 3.2:+66318125 | MS.gene052641:CDS |
| ATTTATGGTTCTATTTCTTC+TGG | 0.309448 | 3.2:+66321336 | MS.gene052641:CDS |
| GTCAAAGGATTAACCTTATA+AGG | 0.310916 | 3.2:-66318327 | None:intergenic |
| AGAAGAAATAGAACCATAAA+TGG | 0.313224 | 3.2:-66321334 | None:intergenic |
| GGATTCTAAGGCTGTGAGTT+GGG | 0.334631 | 3.2:+66317855 | MS.gene052641:CDS |
| AGAACAAAGCCTTGCTTCCT+TGG | 0.338559 | 3.2:-66319848 | None:intergenic |
| TGAATCCTGGCATTTCAAAC+TGG | 0.339413 | 3.2:-66322218 | None:intergenic |
| AATCCTGGTGATAGGATTAT+GGG | 0.339991 | 3.2:+66318210 | MS.gene052641:CDS |
| TTAGCTGAAGTACATGAATA+AGG | 0.342939 | 3.2:-66318162 | None:intergenic |
| ATGGGTTTGGATTCGGCGTC+TGG | 0.347974 | 3.2:+66318228 | MS.gene052641:CDS |
| CAAGGCTTTGTTCTTAATCA+TGG | 0.348449 | 3.2:+66319857 | MS.gene052641:CDS |
| AATCTCCTCTTGAAACAAAT+AGG | 0.351775 | 3.2:-66317784 | None:intergenic |
| TGGTGATAGGATTATGGGTT+TGG | 0.361837 | 3.2:+66318215 | MS.gene052641:CDS |
| GCGTGTCGCGGTGGATTCTA+AGG | 0.372212 | 3.2:+66317843 | MS.gene052641:CDS |
| AGGAGAAAGCTGTGGATTAT+AGG | 0.379628 | 3.2:+66318376 | MS.gene052641:CDS |
| AGGTGAAACAATTGATTTCA+TGG | 0.382095 | 3.2:+66317756 | MS.gene052641:CDS |
| CAGCCTCTTGATGTCATTGC+AGG | 0.383831 | 3.2:-66322030 | None:intergenic |
| TAGGATTATGGGTTTGGATT+CGG | 0.386569 | 3.2:+66318221 | MS.gene052641:CDS |
| TCTCCAACAAATTCATCAAA+TGG | 0.392870 | 3.2:+66317577 | MS.gene052641:CDS |
| AGAAATCGGGTTGAGACATT+TGG | 0.395148 | 3.2:+66322192 | MS.gene052641:CDS |
| TTGTTTCAAGAGGAGATTAG+AGG | 0.398105 | 3.2:+66317789 | MS.gene052641:CDS |
| GACCCATTTGATGAATTTGT+TGG | 0.403227 | 3.2:-66317580 | None:intergenic |
| CTGATCAATATACTGATTAC+CGG | 0.415617 | 3.2:-66318064 | None:intergenic |
| CGCCATGAAAGAGAAGGGTT+TGG | 0.419762 | 3.2:-66317643 | None:intergenic |
| CGCAACTTGTTTCAAAGCTA+TGG | 0.434158 | 3.2:-66319978 | None:intergenic |
| TTAACATGAACATTGTTGTC+TGG | 0.437073 | 3.2:-66317682 | None:intergenic |
| GGCTCCCAGTTTGAAATGCC+AGG | 0.438034 | 3.2:+66322213 | MS.gene052641:CDS |
| TGCACAAGCGGGTTTATCAC+TGG | 0.443318 | 3.2:+66317534 | MS.gene052641:CDS |
| CAGTGGTCTTGTTGCGGCTA+AGG | 0.444969 | 3.2:+66318512 | MS.gene052641:CDS |
| TCATGGTGGGAAGAAGGTTT+CGG | 0.463885 | 3.2:+66318278 | MS.gene052641:CDS |
| CTCTGGGATATAACTGCACT+CGG | 0.464654 | 3.2:+66320118 | MS.gene052641:CDS |
| TATAAGGTTAATCCTTTGAC+TGG | 0.469652 | 3.2:+66318330 | MS.gene052641:CDS |
| GACATCAAGAGGCTGTTTAG+AGG | 0.471361 | 3.2:+66322038 | MS.gene052641:CDS |
| GTTGAAAAGAAAATGCAGAT+TGG | 0.472081 | 3.2:+66320066 | MS.gene052641:CDS |
| CTCCAACAAATTCATCAAAT+GGG | 0.472113 | 3.2:+66317578 | MS.gene052641:CDS |
| GTAGTTCTTATCCTAGAGAA+TGG | 0.476473 | 3.2:+66318421 | MS.gene052641:CDS |
| ACAATATCACAGTAATCAAA+TGG | 0.479034 | 3.2:-66319755 | None:intergenic |
| CCACCACAAATAAGTATCTT+CGG | 0.482409 | 3.2:-66318399 | None:intergenic |
| AAGTATTCAGAGGGAATGCC+GGG | 0.484305 | 3.2:+66318027 | MS.gene052641:CDS |
| TTATACTCATGGTGGGAAGA+AGG | 0.485816 | 3.2:+66318272 | MS.gene052641:CDS |
| AGTCATGGTTATTATACTCA+TGG | 0.486337 | 3.2:+66318261 | MS.gene052641:CDS |
| TGGATTCTAAGGCTGTGAGT+TGG | 0.488319 | 3.2:+66317854 | MS.gene052641:CDS |
| TTTGATGAATTTGTTGGAGA+TGG | 0.492254 | 3.2:-66317574 | None:intergenic |
| TGGTTATATTGATTATGATA+AGG | 0.493587 | 3.2:+66318350 | MS.gene052641:CDS |
| GCTTTATACCCATCGTTACA+AGG | 0.494852 | 3.2:+66319923 | MS.gene052641:CDS |
| GAATCCTGGCATTTCAAACT+GGG | 0.497835 | 3.2:-66322217 | None:intergenic |
| TCCACCGCGACACGCTTCGC+CGG | 0.497839 | 3.2:-66317835 | None:intergenic |
| GAACAAGATGAAGTTGTTGA+TGG | 0.498321 | 3.2:+66317718 | MS.gene052641:CDS |
| TAAAATCAATAATTGAATCC+TGG | 0.499060 | 3.2:-66322231 | None:intergenic |
| TATGGTTCTATTTCTTCTGG+AGG | 0.499529 | 3.2:+66321339 | MS.gene052641:CDS |
| TAAAAGACAATACCTCCTCT+TGG | 0.502018 | 3.2:-66319809 | None:intergenic |
| TAAGTATTCAGAGGGAATGC+CGG | 0.502612 | 3.2:+66318026 | MS.gene052641:CDS |
| GCACAAGCGGGTTTATCACT+GGG | 0.502741 | 3.2:+66317535 | MS.gene052641:CDS |
| GATTCTAAGGCTGTGAGTTG+GGG | 0.507340 | 3.2:+66317856 | MS.gene052641:CDS |
| TAGTTCTTATCCTAGAGAAT+GGG | 0.510663 | 3.2:+66318422 | MS.gene052641:CDS |
| AATATTTACTATTATGGAGA+AGG | 0.513135 | 3.2:+66317909 | MS.gene052641:CDS |
| CCGGTATAATATTTCGCTCC+CGG | 0.514845 | 3.2:-66318045 | None:intergenic |
| TATTGATTATGATAAGGTTG+AGG | 0.517586 | 3.2:+66318356 | MS.gene052641:CDS |
| AGGCCGAAGATACTTATTTG+TGG | 0.519395 | 3.2:+66318396 | MS.gene052641:CDS |
| ACAACCCACAAAAGTCTTCG+AGG | 0.522891 | 3.2:+66319785 | MS.gene052641:CDS |
| TCTTCTGGAGGAGTGAGAAT+CGG | 0.525184 | 3.2:+66321351 | MS.gene052641:CDS |
| AGCAGCAATGTGATTGTTGT+GGG | 0.529037 | 3.2:-66319951 | None:intergenic |
| GGTGAAACAATTGATTTCAT+GGG | 0.530175 | 3.2:+66317757 | MS.gene052641:CDS |
| GATCTTGATTCAAGTAATTG+GGG | 0.535029 | 3.2:+66318126 | MS.gene052641:CDS |
| ATGTTCCCTCTGTATAATGC+TGG | 0.535614 | 3.2:-66322109 | None:intergenic |
| TAAACCCGCTTGTGCATCCA+TGG | 0.538895 | 3.2:-66317527 | None:intergenic |
| TGATCCATGGATGCACAAGC+GGG | 0.546671 | 3.2:+66317523 | None:intergenic |
| GGTTTGGATTCGGCGTCTGG+TGG | 0.551813 | 3.2:+66318231 | MS.gene052641:CDS |
| TCTGGTGGACATTTGAGTCA+TGG | 0.554954 | 3.2:+66318246 | MS.gene052641:CDS |
| TCAGGATCAGCAACACTCAA+AGG | 0.560325 | 3.2:-66317886 | None:intergenic |
| AGGAAGATTGCTGATAAATG+TGG | 0.562025 | 3.2:+66318459 | MS.gene052641:CDS |
| CTCGCATAATCCCATTCTCT+AGG | 0.565281 | 3.2:-66318432 | None:intergenic |
| GTATAAAGCATACATGCAGC+AGG | 0.570150 | 3.2:+66320009 | MS.gene052641:CDS |
| TGGGGACCTCCTTGTAACGA+TGG | 0.574338 | 3.2:-66319932 | None:intergenic |
| TTGACTAATAAGTATTCAGA+GGG | 0.575405 | 3.2:+66318018 | MS.gene052641:CDS |
| TCATATCAGTGGTCTTGTTG+CGG | 0.575798 | 3.2:+66318506 | MS.gene052641:CDS |
| TGCATGTATGCTTTATACTC+TGG | 0.576245 | 3.2:-66320004 | None:intergenic |
| GGGCCAAAACCAAGGAAGCA+AGG | 0.577703 | 3.2:+66319839 | MS.gene052641:CDS |
| TTGATCCATGGATGCACAAG+CGG | 0.585997 | 3.2:+66317522 | None:intergenic |
| ACCGAAAAGGGCCAAAACCA+AGG | 0.591701 | 3.2:+66319831 | MS.gene052641:CDS |
| GGGGACCTCCTTGTAACGAT+GGG | 0.593245 | 3.2:-66319931 | None:intergenic |
| GATGAAGTTGTTGATGGTGA+TGG | 0.596078 | 3.2:+66317724 | MS.gene052641:CDS |
| TTTGACTAATAAGTATTCAG+AGG | 0.596390 | 3.2:+66318017 | MS.gene052641:CDS |
| AAATGCAGATTGGTTACTGA+TGG | 0.597826 | 3.2:+66320076 | MS.gene052641:CDS |
| GAGCAGCAATGTGATTGTTG+TGG | 0.598188 | 3.2:-66319952 | None:intergenic |
| TCCGGCGAAGCGTGTCGCGG+TGG | 0.601046 | 3.2:+66317834 | MS.gene052641:CDS |
| ACTCCTGCAATGACATCAAG+AGG | 0.601746 | 3.2:+66322027 | MS.gene052641:CDS |
| GATGGTGATGGTGAAGAAGA+AGG | 0.602741 | 3.2:+66317736 | MS.gene052641:CDS |
| AGTAAACGCCATGAAAGAGA+AGG | 0.604955 | 3.2:-66317649 | None:intergenic |
| AAACAATTGATTTCATGGGT+AGG | 0.605913 | 3.2:+66317761 | MS.gene052641:CDS |
| CATGGTTATTATACTCATGG+TGG | 0.607119 | 3.2:+66318264 | MS.gene052641:CDS |
| TGTTCCGGCGAAGCGTGTCG+CGG | 0.611098 | 3.2:+66317831 | MS.gene052641:CDS |
| GTAGGCCTATTTGTTTCAAG+AGG | 0.611633 | 3.2:+66317779 | MS.gene052641:CDS |
| ATGGTTATTATACTCATGGT+GGG | 0.612324 | 3.2:+66318265 | MS.gene052641:CDS |
| TACAGACAGAAACTATGAGA+AGG | 0.612965 | 3.2:+66321275 | MS.gene052641:intron |
| CCGAAGATACTTATTTGTGG+TGG | 0.613875 | 3.2:+66318399 | MS.gene052641:CDS |
| CCGGGAGCGAAATATTATAC+CGG | 0.613923 | 3.2:+66318045 | MS.gene052641:CDS |
| AGCATTATACAGAGGGAACA+TGG | 0.613990 | 3.2:+66322111 | MS.gene052641:CDS |
| TAATCAATATAACCAGTCAA+AGG | 0.615001 | 3.2:-66318342 | None:intergenic |
| CTAGAGAATGGGATTATGCG+AGG | 0.616599 | 3.2:+66318433 | MS.gene052641:CDS |
| CCTCAGAAGAAAATCTGCCA+TGG | 0.616792 | 3.2:-66322073 | None:intergenic |
| GATTACCAGCATTATACAGA+GGG | 0.630319 | 3.2:+66322104 | MS.gene052641:CDS |
| TAAGGTTGAGGAGAAAGCTG+TGG | 0.630384 | 3.2:+66318368 | MS.gene052641:CDS |
| TGAATTTGTTGGAGATGGCA+TGG | 0.631230 | 3.2:-66317569 | None:intergenic |
| GTAAACGCCATGAAAGAGAA+GGG | 0.634712 | 3.2:-66317648 | None:intergenic |
| ATGTCTCAACCCGATTTCTG+AGG | 0.637365 | 3.2:-66322188 | None:intergenic |
| ATTCTAAGGCTGTGAGTTGG+GGG | 0.647751 | 3.2:+66317857 | MS.gene052641:CDS |
| TGGTGGGAAGAAGGTTTCGG+CGG | 0.648151 | 3.2:+66318281 | MS.gene052641:CDS |
| AAACCCATAATCCTATCACC+AGG | 0.648442 | 3.2:-66318213 | None:intergenic |
| AGTCTTCGAGGTCCAAGAGG+AGG | 0.652611 | 3.2:+66319797 | MS.gene052641:CDS |
| AAACTATGAGAAGGTTTGTG+AGG | 0.660257 | 3.2:+66321284 | MS.gene052641:CDS |
| AAAAGTCTTCGAGGTCCAAG+AGG | 0.670998 | 3.2:+66319794 | MS.gene052641:CDS |
| TGTGACATGGCTCATATCAG+TGG | 0.681496 | 3.2:+66318495 | MS.gene052641:CDS |
| CACAAGCGGGTTTATCACTG+GGG | 0.683010 | 3.2:+66317536 | MS.gene052641:CDS |
| AGGGCTGTGATGGAAGCACT+TGG | 0.691729 | 3.2:+66317988 | MS.gene052641:CDS |
| AGATTACCAGCATTATACAG+AGG | 0.693899 | 3.2:+66322103 | MS.gene052641:CDS |
| GCAGCAATGTGATTGTTGTG+GGG | 0.748236 | 3.2:-66319950 | None:intergenic |
| TTATACCCATCGTTACAAGG+AGG | 0.763503 | 3.2:+66319926 | MS.gene052641:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAATAACTTGTAATA+TGG | - | chr3.2:66320233-66320252 | None:intergenic | 10.0% |
| !!! | AAAATTCCAAAAATAATTTT+AGG | - | chr3.2:66320914-66320933 | None:intergenic | 10.0% |
| !!! | AATAATAAAAACAACTATTT+TGG | + | chr3.2:66319246-66319265 | MS.gene052641:intron | 10.0% |
| !! | AAAAAAAAAAGATTATAGTC+CGG | - | chr3.2:66319580-66319599 | None:intergenic | 15.0% |
| !! | AAATACTAAACTAAATAGTA+TGG | - | chr3.2:66321490-66321509 | None:intergenic | 15.0% |
| !! | ATAAACATAATAAGATGATA+GGG | - | chr3.2:66321256-66321275 | None:intergenic | 15.0% |
| !! | ATACATCTATTAAAAAAATG+GGG | - | chr3.2:66320977-66320996 | None:intergenic | 15.0% |
| !! | ATGTTTAAACAAATTACTAT+CGG | + | chr3.2:66321941-66321960 | MS.gene052641:intron | 15.0% |
| !! | CATACATCTATTAAAAAAAT+GGG | - | chr3.2:66320978-66320997 | None:intergenic | 15.0% |
| !! | TATAAACATAATAAGATGAT+AGG | - | chr3.2:66321257-66321276 | None:intergenic | 15.0% |
| !!! | ACATTTTAGAAAATGAAAAA+AGG | - | chr3.2:66319123-66319142 | None:intergenic | 15.0% |
| !!! | CTAAAAATCCTTTATTTTAT+TGG | + | chr3.2:66321995-66322014 | MS.gene052641:intron | 15.0% |
| !!! | TAATAGTAATTATGATTTTG+AGG | + | chr3.2:66319886-66319905 | MS.gene052641:CDS | 15.0% |
| !!! | TATTTATGAATTTGTTAGAT+CGG | + | chr3.2:66320744-66320763 | MS.gene052641:intron | 15.0% |
| !!! | TCTTTTTGAAAAAAAGTTTA+TGG | + | chr3.2:66321839-66321858 | MS.gene052641:intron | 15.0% |
| !!! | TTTTAGCCTAAAATTATTTT+TGG | + | chr3.2:66320905-66320924 | MS.gene052641:intron | 15.0% |
| !! | AAACGTTATCATAAAGTAAA+CGG | + | chr3.2:66319374-66319393 | MS.gene052641:intron | 20.0% |
| !! | AATATTTACTATTATGGAGA+AGG | + | chr3.2:66317909-66317928 | MS.gene052641:CDS | 20.0% |
| !! | ACTTTCAAATTTGTATCAAT+TGG | + | chr3.2:66320681-66320700 | MS.gene052641:intron | 20.0% |
| !! | ATAAAAAAGAACAGCATAAT+TGG | - | chr3.2:66319626-66319645 | None:intergenic | 20.0% |
| !! | ATATATGAAAAACAAAACAG+AGG | - | chr3.2:66320169-66320188 | None:intergenic | 20.0% |
| !! | ATATCCACATATTTAACAAA+TGG | + | chr3.2:66321595-66321614 | MS.gene052641:intron | 20.0% |
| !! | CAAATTAAAAGTGAATATGA+TGG | + | chr3.2:66320197-66320216 | MS.gene052641:intron | 20.0% |
| !! | CAAATTCATAAATAGTTTCT+AGG | - | chr3.2:66320738-66320757 | None:intergenic | 20.0% |
| !! | CCATACATCTATTAAAAAAA+TGG | - | chr3.2:66320979-66320998 | None:intergenic | 20.0% |
| !! | GGACATAATCATAAAATTTA+AGG | - | chr3.2:66320289-66320308 | None:intergenic | 20.0% |
| !! | GTACAAATTTATAAGACAAA+AGG | - | chr3.2:66321209-66321228 | None:intergenic | 20.0% |
| !! | TAAACTAAATAGTATGGTAA+AGG | - | chr3.2:66321484-66321503 | None:intergenic | 20.0% |
| !! | TCCATAATAGTAAATATTTC+AGG | - | chr3.2:66317907-66317926 | None:intergenic | 20.0% |
| !! | TCCTGAAATATTTACTATTA+TGG | + | chr3.2:66317903-66317922 | MS.gene052641:CDS | 20.0% |
| !! | TGTTTAAACAAATTACTATC+GGG | + | chr3.2:66321942-66321961 | MS.gene052641:intron | 20.0% |
| !! | TTATAAGACAAAAGGAATAT+AGG | - | chr3.2:66321201-66321220 | None:intergenic | 20.0% |
| !! | TTTAGCAATAATTAAACGTA+AGG | - | chr3.2:66321980-66321999 | None:intergenic | 20.0% |
| !! | TTTGTATTAGCAACTTAAAA+TGG | - | chr3.2:66319151-66319170 | None:intergenic | 20.0% |
| !! | TTTGTTAAATATGTGGATAT+TGG | - | chr3.2:66321595-66321614 | None:intergenic | 20.0% |
| !!! | ATGGTAATATCTTATTTTGT+TGG | + | chr3.2:66321614-66321633 | MS.gene052641:intron | 20.0% |
| !!! | ATTACCATTTGTTAAATATG+TGG | - | chr3.2:66321602-66321621 | None:intergenic | 20.0% |
| !!! | ATTTATGAATTTGTTAGATC+GGG | + | chr3.2:66320745-66320764 | MS.gene052641:intron | 20.0% |
| !!! | CAATTGTTTTTACTTTTTAC+AGG | + | chr3.2:66319721-66319740 | MS.gene052641:intron | 20.0% |
| !!! | CATACACTTTTAATATATCA+GGG | - | chr3.2:66320310-66320329 | None:intergenic | 20.0% |
| !!! | CCATTTTTTTAATAGATGTA+TGG | + | chr3.2:66320976-66320995 | MS.gene052641:intron | 20.0% |
| !!! | CTATTTTAATACTTTGACTT+CGG | - | chr3.2:66321400-66321419 | None:intergenic | 20.0% |
| !!! | TATTTTAATACTTTGACTTC+GGG | - | chr3.2:66321399-66321418 | None:intergenic | 20.0% |
| !!! | TCAGTTTACGTTAATTTTTT+TGG | + | chr3.2:66321422-66321441 | MS.gene052641:intron | 20.0% |
| !!! | TGGTTATATTGATTATGATA+AGG | + | chr3.2:66318350-66318369 | MS.gene052641:CDS | 20.0% |
| !!! | TTATGAGTTTTACTTGTTTT+GGG | + | chr3.2:66318569-66318588 | MS.gene052641:intron | 20.0% |
| !!! | TTTATGAGTTTTACTTGTTT+TGG | + | chr3.2:66318568-66318587 | MS.gene052641:intron | 20.0% |
| ! | AACGTTATCATAAAGTAAAC+GGG | + | chr3.2:66319375-66319394 | MS.gene052641:intron | 25.0% |
| ! | AAGAATAGTATAGAGTAGTA+GGG | - | chr3.2:66321679-66321698 | None:intergenic | 25.0% |
| ! | AATAGAGATATTTGACTAAG+TGG | + | chr3.2:66321022-66321041 | MS.gene052641:intron | 25.0% |
| ! | ACAATATCACAGTAATCAAA+TGG | - | chr3.2:66319758-66319777 | None:intergenic | 25.0% |
| ! | ACAATTGTCAATATACATGA+AGG | - | chr3.2:66319708-66319727 | None:intergenic | 25.0% |
| ! | ACTGTATACGAATGATTAAA+AGG | - | chr3.2:66319526-66319545 | None:intergenic | 25.0% |
| ! | AGAAGAAATAGAACCATAAA+TGG | - | chr3.2:66321337-66321356 | None:intergenic | 25.0% |
| ! | AGTGTAATTCTATTTGAAAG+TGG | + | chr3.2:66318904-66318923 | MS.gene052641:intron | 25.0% |
| ! | ATACAGTCTCATTTATTCTT+GGG | + | chr3.2:66321904-66321923 | MS.gene052641:intron | 25.0% |
| ! | CAGATACTTTGAATTTGAAA+AGG | - | chr3.2:66320938-66320957 | None:intergenic | 25.0% |
| ! | CCTGAATACCAATAAAATAA+AGG | - | chr3.2:66322006-66322025 | None:intergenic | 25.0% |
| ! | CTATTATCTTCATGTTAGAT+AGG | + | chr3.2:66319317-66319336 | MS.gene052641:intron | 25.0% |
| ! | CTCAATTGATACTATTTGAA+GGG | + | chr3.2:66318604-66318623 | MS.gene052641:intron | 25.0% |
| ! | CTTGAAAAACAAATCTTCTA+TGG | - | chr3.2:66321712-66321731 | None:intergenic | 25.0% |
| ! | GATACAAATTTGAAAGTCTT+TGG | - | chr3.2:66320678-66320697 | None:intergenic | 25.0% |
| ! | GTGTAATTCTATTTGAAAGT+GGG | + | chr3.2:66318905-66318924 | MS.gene052641:intron | 25.0% |
| ! | TAATCAATATAACCAGTCAA+AGG | - | chr3.2:66318345-66318364 | None:intergenic | 25.0% |
| ! | TATACAGTCTCATTTATTCT+TGG | + | chr3.2:66321903-66321922 | MS.gene052641:intron | 25.0% |
| ! | TCATCTTCTCTTCATTATAA+TGG | - | chr3.2:66319196-66319215 | None:intergenic | 25.0% |
| ! | TCTCAATTGATACTATTTGA+AGG | + | chr3.2:66318603-66318622 | MS.gene052641:intron | 25.0% |
| ! | TGATCTTGATTCAAGTAATT+GGG | + | chr3.2:66318125-66318144 | MS.gene052641:CDS | 25.0% |
| ! | TTGACTAATAAGTATTCAGA+GGG | + | chr3.2:66318018-66318037 | MS.gene052641:CDS | 25.0% |
| ! | TTGATCTTGATTCAAGTAAT+TGG | + | chr3.2:66318124-66318143 | MS.gene052641:CDS | 25.0% |
| ! | TTTGACTAATAAGTATTCAG+AGG | + | chr3.2:66318017-66318036 | MS.gene052641:CDS | 25.0% |
| !! | AGTTTATGGAAAATGAGTTT+TGG | + | chr3.2:66321853-66321872 | MS.gene052641:intron | 25.0% |
| !! | ATTTATGGTTCTATTTCTTC+TGG | + | chr3.2:66321336-66321355 | MS.gene052641:CDS | 25.0% |
| !! | CTTCAGTTTATGCATATTTT+TGG | - | chr3.2:66319037-66319056 | None:intergenic | 25.0% |
| !! | GAACAATTGTGTGAATTTTT+CGG | - | chr3.2:66319286-66319305 | None:intergenic | 25.0% |
| !! | GCATACACTTTTAATATATC+AGG | - | chr3.2:66320311-66320330 | None:intergenic | 25.0% |
| !! | GTTTATGGAAAATGAGTTTT+GGG | + | chr3.2:66321854-66321873 | MS.gene052641:intron | 25.0% |
| !! | TATTGATTATGATAAGGTTG+AGG | + | chr3.2:66318356-66318375 | MS.gene052641:CDS | 25.0% |
| !! | TTTTTCATCATTTAGCAACA+TGG | - | chr3.2:66320258-66320277 | None:intergenic | 25.0% |
| !!! | AATGTGTTTTAGGAAACTTT+TGG | + | chr3.2:66321785-66321804 | MS.gene052641:intron | 25.0% |
| !!! | ATATTTTTGACCTCAGAAAT+CGG | + | chr3.2:66322178-66322197 | MS.gene052641:CDS | 25.0% |
| !!! | ATGTGTTTTAGGAAACTTTT+GGG | + | chr3.2:66321786-66321805 | MS.gene052641:intron | 25.0% |
| !!! | CCTTTATTTTATTGGTATTC+AGG | + | chr3.2:66322003-66322022 | MS.gene052641:intron | 25.0% |
| !!! | GCTGTTCTTTTTTATTTGTT+TGG | + | chr3.2:66319631-66319650 | MS.gene052641:intron | 25.0% |
| AAACACAACCTTGAGTTAAA+AGG | - | chr3.2:66320840-66320859 | None:intergenic | 30.0% | |
| AAATCTATCTTTATCCCACT+AGG | + | chr3.2:66320521-66320540 | MS.gene052641:intron | 30.0% | |
| AAGGTAGCAAAATGAAAAGA+AGG | - | chr3.2:66320550-66320569 | None:intergenic | 30.0% | |
| AATCACATACACAATAAGAC+AGG | - | chr3.2:66318701-66318720 | None:intergenic | 30.0% | |
| AATCTCCTCTTGAAACAAAT+AGG | - | chr3.2:66317787-66317806 | None:intergenic | 30.0% | |
| ACGTTATCATAAAGTAAACG+GGG | + | chr3.2:66319376-66319395 | MS.gene052641:intron | 30.0% | |
| AGTCATGGTTATTATACTCA+TGG | + | chr3.2:66318261-66318280 | MS.gene052641:CDS | 30.0% | |
| ATGGTTATTATACTCATGGT+GGG | + | chr3.2:66318265-66318284 | MS.gene052641:CDS | 30.0% | |
| ATGTGATTCATAAAAGGACA+AGG | - | chr3.2:66319469-66319488 | None:intergenic | 30.0% | |
| CAAATTTGAAAGTCTTTGGA+TGG | - | chr3.2:66320674-66320693 | None:intergenic | 30.0% | |
| CAAGAATAGTATAGAGTAGT+AGG | - | chr3.2:66321680-66321699 | None:intergenic | 30.0% | |
| CTCCAACAAATTCATCAAAT+GGG | + | chr3.2:66317578-66317597 | MS.gene052641:CDS | 30.0% | |
| CTTTGCTTTATAGACATGTT+TGG | + | chr3.2:66318668-66318687 | MS.gene052641:intron | 30.0% | |
| GAAAAGTTGAGACAGTTTAA+AGG | + | chr3.2:66317931-66317950 | MS.gene052641:CDS | 30.0% | |
| GAATGATTAAAAGGATGACT+TGG | - | chr3.2:66319517-66319536 | None:intergenic | 30.0% | |
| GATCTTGATTCAAGTAATTG+GGG | + | chr3.2:66318126-66318145 | MS.gene052641:CDS | 30.0% | |
| GTCAAAGGATTAACCTTATA+AGG | - | chr3.2:66318330-66318349 | None:intergenic | 30.0% | |
| GTTGAAAAGAAAATGCAGAT+TGG | + | chr3.2:66320066-66320085 | MS.gene052641:CDS | 30.0% | |
| TAGGAGATGTGATTCATAAA+AGG | - | chr3.2:66319475-66319494 | None:intergenic | 30.0% | |
| TAGTTCTTATCCTAGAGAAT+GGG | + | chr3.2:66318422-66318441 | MS.gene052641:CDS | 30.0% | |
| TATAAGGTTAATCCTTTGAC+TGG | + | chr3.2:66318330-66318349 | MS.gene052641:CDS | 30.0% | |
| TATACAAAACTCAACAACAG+AGG | - | chr3.2:66321100-66321119 | None:intergenic | 30.0% | |
| TCATTATAATGGTTCACTTC+AGG | - | chr3.2:66319185-66319204 | None:intergenic | 30.0% | |
| TCTCCAACAAATTCATCAAA+TGG | + | chr3.2:66317577-66317596 | MS.gene052641:CDS | 30.0% | |
| TGTGGATATTGGATCTTATA+TGG | - | chr3.2:66321584-66321603 | None:intergenic | 30.0% | |
| TGTGTTTACTCGATAAGTAA+TGG | + | chr3.2:66320853-66320872 | MS.gene052641:intron | 30.0% | |
| TTAACATGAACATTGTTGTC+TGG | - | chr3.2:66317685-66317704 | None:intergenic | 30.0% | |
| TTAGCTGAAGTACATGAATA+AGG | - | chr3.2:66318165-66318184 | None:intergenic | 30.0% | |
| ! | AAACAATTGATTTCATGGGT+AGG | + | chr3.2:66317761-66317780 | MS.gene052641:CDS | 30.0% |
| ! | AGGTGAAACAATTGATTTCA+TGG | + | chr3.2:66317756-66317775 | MS.gene052641:CDS | 30.0% |
| ! | ATCATGCAAAGATTTTCTCA+AGG | + | chr3.2:66322137-66322156 | MS.gene052641:CDS | 30.0% |
| ! | CTGATCAATATACTGATTAC+CGG | - | chr3.2:66318067-66318086 | None:intergenic | 30.0% |
| ! | GGCTTAATATTTCTTTTGGT+GGG | + | chr3.2:66319397-66319416 | MS.gene052641:intron | 30.0% |
| ! | GGTGAAACAATTGATTTCAT+GGG | + | chr3.2:66317757-66317776 | MS.gene052641:CDS | 30.0% |
| ! | GTATTGTCTTTTACCGAAAA+GGG | + | chr3.2:66319819-66319838 | MS.gene052641:CDS | 30.0% |
| ! | TCATGCAAAGATTTTCTCAA+GGG | + | chr3.2:66322138-66322157 | MS.gene052641:CDS | 30.0% |
| ! | TGGAAGGAAAAATGTGTTTT+AGG | + | chr3.2:66321775-66321794 | MS.gene052641:intron | 30.0% |
| !! | TATTTTTGACCTCAGAAATC+GGG | + | chr3.2:66322179-66322198 | MS.gene052641:CDS | 30.0% |
| !! | TTCTGAGAATTTTGTTTGCA+GGG | + | chr3.2:66317969-66317988 | MS.gene052641:CDS | 30.0% |
| !! | TTTGATGAATTTGTTGGAGA+TGG | - | chr3.2:66317577-66317596 | None:intergenic | 30.0% |
| !!! | AACACAACAAAGTTTTGTTC+CGG | + | chr3.2:66317816-66317835 | MS.gene052641:CDS | 30.0% |
| !!! | GCTAATTTTGCTGTTTATAC+TGG | + | chr3.2:66318180-66318199 | MS.gene052641:CDS | 30.0% |
| !!! | GGTTTGGTTTTGAATTCAAA+TGG | - | chr3.2:66317630-66317649 | None:intergenic | 30.0% |
| !!! | TGTGTTTTAGGAAACTTTTG+GGG | + | chr3.2:66321787-66321806 | MS.gene052641:intron | 30.0% |
| !!! | TTTTGAGACTTTGCCTTATA+AGG | + | chr3.2:66318314-66318333 | MS.gene052641:CDS | 30.0% |
| AAACTATGAGAAGGTTTGTG+AGG | + | chr3.2:66321284-66321303 | MS.gene052641:CDS | 35.0% | |
| AAGATAAACCTCGCATATCT+TGG | - | chr3.2:66320607-66320626 | None:intergenic | 35.0% | |
| AATCCTGGTGATAGGATTAT+GGG | + | chr3.2:66318210-66318229 | MS.gene052641:CDS | 35.0% | |
| ACTCTATACTATTCTTGTGC+TGG | + | chr3.2:66321683-66321702 | MS.gene052641:intron | 35.0% | |
| AGAAATTTCACGTGTGTAAC+CGG | + | chr3.2:66319558-66319577 | MS.gene052641:intron | 35.0% | |
| AGAGATATTTGACTAAGTGG+TGG | + | chr3.2:66321025-66321044 | MS.gene052641:intron | 35.0% | |
| AGATTACCAGCATTATACAG+AGG | + | chr3.2:66322103-66322122 | MS.gene052641:CDS | 35.0% | |
| AGGAAGATTGCTGATAAATG+TGG | + | chr3.2:66318459-66318478 | MS.gene052641:CDS | 35.0% | |
| AGGAGAAGAGTGATAAGTTA+AGG | - | chr3.2:66320569-66320588 | None:intergenic | 35.0% | |
| AGTTGTTTGTGAAATGTGAG+TGG | + | chr3.2:66319428-66319447 | MS.gene052641:intron | 35.0% | |
| ATAACTGCACTCGGTTTAAT+TGG | + | chr3.2:66320127-66320146 | MS.gene052641:CDS | 35.0% | |
| ATGACCTTTACCATGAAAAC+CGG | - | chr3.2:66319079-66319098 | None:intergenic | 35.0% | |
| ATGAGCAATAGACAGTTAGT+AGG | + | chr3.2:66320797-66320816 | MS.gene052641:intron | 35.0% | |
| ATGCACAAGTCAATTCTTTG+TGG | + | chr3.2:66320411-66320430 | MS.gene052641:intron | 35.0% | |
| CAATTTACATTCCACCAAAC+AGG | - | chr3.2:66319003-66319022 | None:intergenic | 35.0% | |
| CATGGTTATTATACTCATGG+TGG | + | chr3.2:66318264-66318283 | MS.gene052641:CDS | 35.0% | |
| CCACCACAAATAAGTATCTT+CGG | - | chr3.2:66318402-66318421 | None:intergenic | 35.0% | |
| GAACAAGATGAAGTTGTTGA+TGG | + | chr3.2:66317718-66317737 | MS.gene052641:CDS | 35.0% | |
| GAAGGGTAGAGTTAGATATA+TGG | + | chr3.2:66318621-66318640 | MS.gene052641:intron | 35.0% | |
| GACCCATTTGATGAATTTGT+TGG | - | chr3.2:66317583-66317602 | None:intergenic | 35.0% | |
| GATTACCAGCATTATACAGA+GGG | + | chr3.2:66322104-66322123 | MS.gene052641:CDS | 35.0% | |
| GTAGTTCTTATCCTAGAGAA+TGG | + | chr3.2:66318421-66318440 | MS.gene052641:CDS | 35.0% | |
| TAAAAGACAATACCTCCTCT+TGG | - | chr3.2:66319812-66319831 | None:intergenic | 35.0% | |
| TACAGACAGAAACTATGAGA+AGG | + | chr3.2:66321275-66321294 | MS.gene052641:intron | 35.0% | |
| TAGGATTATGGGTTTGGATT+CGG | + | chr3.2:66318221-66318240 | MS.gene052641:CDS | 35.0% | |
| TCATGAAGGAAACTAATTGC+CGG | + | chr3.2:66318962-66318981 | MS.gene052641:intron | 35.0% | |
| TCCTTCATGAAGGTGATTAA+CGG | - | chr3.2:66318952-66318971 | None:intergenic | 35.0% | |
| TCGTGTATCTAATCTTTGTC+CGG | + | chr3.2:66319057-66319076 | MS.gene052641:intron | 35.0% | |
| TGATACGAAAGAGCCAAAAA+AGG | - | chr3.2:66318857-66318876 | None:intergenic | 35.0% | |
| TGCATGTATGCTTTATACTC+TGG | - | chr3.2:66320007-66320026 | None:intergenic | 35.0% | |
| TGGAATGTAAATTGCCTAGA+TGG | + | chr3.2:66319009-66319028 | MS.gene052641:intron | 35.0% | |
| TTCCTAACATGCTAGAACTA+AGG | - | chr3.2:66318811-66318830 | None:intergenic | 35.0% | |
| TTGTTTCAAGAGGAGATTAG+AGG | + | chr3.2:66317789-66317808 | MS.gene052641:CDS | 35.0% | |
| TTTACTATTTGCCTGTTTGG+TGG | + | chr3.2:66318989-66319008 | MS.gene052641:intron | 35.0% | |
| TTTCGTATCATCGAGTTTGA+TGG | + | chr3.2:66318867-66318886 | MS.gene052641:intron | 35.0% | |
| TTTGTTTGGCGCTTTGTAAA+AGG | + | chr3.2:66319645-66319664 | MS.gene052641:intron | 35.0% | |
| ! | AAATGCAGATTGGTTACTGA+TGG | + | chr3.2:66320076-66320095 | MS.gene052641:CDS | 35.0% |
| ! | ACGGGGCTTAATATTTCTTT+TGG | + | chr3.2:66319393-66319412 | MS.gene052641:intron | 35.0% |
| ! | AGATCGAGATGATGCATTTT+TGG | + | chr3.2:66319222-66319241 | MS.gene052641:intron | 35.0% |
| ! | ATTTTTCCTTCCAACAGAGT+GGG | - | chr3.2:66321768-66321787 | None:intergenic | 35.0% |
| ! | GCAATTAGTTTCCTTCATGA+AGG | - | chr3.2:66318962-66318981 | None:intergenic | 35.0% |
| ! | GGGCTTAATATTTCTTTTGG+TGG | + | chr3.2:66319396-66319415 | MS.gene052641:intron | 35.0% |
| ! | GGTATTGTCTTTTACCGAAA+AGG | + | chr3.2:66319818-66319837 | MS.gene052641:CDS | 35.0% |
| ! | TAATCTTTGTCCGGTTTTCA+TGG | + | chr3.2:66319066-66319085 | MS.gene052641:intron | 35.0% |
| ! | TATGGTTCTATTTCTTCTGG+AGG | + | chr3.2:66321339-66321358 | MS.gene052641:CDS | 35.0% |
| ! | TGACAATCATCTTTTGCTCT+GGG | + | chr3.2:66320102-66320121 | MS.gene052641:CDS | 35.0% |
| ! | TTACTATCGGGTCTTTTGAA+TGG | + | chr3.2:66321954-66321973 | MS.gene052641:intron | 35.0% |
| !! | AAAAGGATGACTTGGTTGTT+AGG | - | chr3.2:66319509-66319528 | None:intergenic | 35.0% |
| !! | AAAGGATGACTTGGTTGTTA+GGG | - | chr3.2:66319508-66319527 | None:intergenic | 35.0% |
| !! | CAAGGCTTTGTTCTTAATCA+TGG | + | chr3.2:66319857-66319876 | MS.gene052641:CDS | 35.0% |
| !! | CTCAATAAGTGTGCCATTTA+TGG | + | chr3.2:66321321-66321340 | MS.gene052641:CDS | 35.0% |
| !! | CTTCTGAGAATTTTGTTTGC+AGG | + | chr3.2:66317968-66317987 | MS.gene052641:CDS | 35.0% |
| !! | TAGTATTTTGAGTCCATGCT+TGG | + | chr3.2:66321502-66321521 | MS.gene052641:intron | 35.0% |
| !! | TTAGTTCTAGCATGTTAGGA+AGG | + | chr3.2:66318810-66318829 | MS.gene052641:intron | 35.0% |
| !! | TTCCTTAGTTCTAGCATGTT+AGG | + | chr3.2:66318806-66318825 | MS.gene052641:intron | 35.0% |
| !! | TTTTAGGAAACTTTTGGGGA+AGG | + | chr3.2:66321791-66321810 | MS.gene052641:intron | 35.0% |
| !!! | CAAAATGACCTCACCTTTTT+TGG | + | chr3.2:66318841-66318860 | MS.gene052641:intron | 35.0% |
| !!! | GCATATTTTTGGAACCATCT+AGG | - | chr3.2:66319026-66319045 | None:intergenic | 35.0% |
| !!! | TATACTGGTCTTTTGAATCC+TGG | + | chr3.2:66318195-66318214 | MS.gene052641:CDS | 35.0% |
| AAACCCATAATCCTATCACC+AGG | - | chr3.2:66318216-66318235 | None:intergenic | 40.0% | |
| AACCAAACCCTTCTCTTTCA+TGG | + | chr3.2:66317641-66317660 | MS.gene052641:CDS | 40.0% | |
| AATGGGATTATGCGAGGTTT+AGG | + | chr3.2:66318439-66318458 | MS.gene052641:CDS | 40.0% | |
| ACTATTTGCCAAGATATGCG+AGG | + | chr3.2:66320596-66320615 | MS.gene052641:intron | 40.0% | |
| AGCAGCAATGTGATTGTTGT+GGG | - | chr3.2:66319954-66319973 | None:intergenic | 40.0% | |
| AGCATTATACAGAGGGAACA+TGG | + | chr3.2:66322111-66322130 | MS.gene052641:CDS | 40.0% | |
| AGGCCGAAGATACTTATTTG+TGG | + | chr3.2:66318396-66318415 | MS.gene052641:CDS | 40.0% | |
| AGTAAACGCCATGAAAGAGA+AGG | - | chr3.2:66317652-66317671 | None:intergenic | 40.0% | |
| AGTTAGTAGGAGTCTCTGTA+TGG | + | chr3.2:66320810-66320829 | MS.gene052641:intron | 40.0% | |
| ATGAAAAGAAGGCAACCTAG+TGG | - | chr3.2:66320539-66320558 | None:intergenic | 40.0% | |
| ATGAAGGAAACTAATTGCCG+GGG | + | chr3.2:66318964-66318983 | MS.gene052641:intron | 40.0% | |
| ATGTTCCCTCTGTATAATGC+TGG | - | chr3.2:66322112-66322131 | None:intergenic | 40.0% | |
| CATGAAGGAAACTAATTGCC+GGG | + | chr3.2:66318963-66318982 | MS.gene052641:intron | 40.0% | |
| CCGAAGATACTTATTTGTGG+TGG | + | chr3.2:66318399-66318418 | MS.gene052641:CDS | 40.0% | |
| GAATCCTGGCATTTCAAACT+GGG | - | chr3.2:66322220-66322239 | None:intergenic | 40.0% | |
| GAATCCTGGTGATAGGATTA+TGG | + | chr3.2:66318209-66318228 | MS.gene052641:CDS | 40.0% | |
| GCTTTATACCCATCGTTACA+AGG | + | chr3.2:66319923-66319942 | MS.gene052641:CDS | 40.0% | |
| GGGTTTACTATTTGCCTGTT+TGG | + | chr3.2:66318986-66319005 | MS.gene052641:intron | 40.0% | |
| GTAAACGCCATGAAAGAGAA+GGG | - | chr3.2:66317651-66317670 | None:intergenic | 40.0% | |
| GTAGGCCTATTTGTTTCAAG+AGG | + | chr3.2:66317779-66317798 | MS.gene052641:CDS | 40.0% | |
| GTATAAAGCATACATGCAGC+AGG | + | chr3.2:66320009-66320028 | MS.gene052641:CDS | 40.0% | |
| GTGAAATGTGAGTGGATAGT+GGG | + | chr3.2:66319436-66319455 | MS.gene052641:intron | 40.0% | |
| GTTAGTAGGAGTCTCTGTAT+GGG | + | chr3.2:66320811-66320830 | MS.gene052641:intron | 40.0% | |
| TAAGTATTCAGAGGGAATGC+CGG | + | chr3.2:66318026-66318045 | MS.gene052641:CDS | 40.0% | |
| TATCTTGGCAAATAGTCCTC+AGG | - | chr3.2:66320592-66320611 | None:intergenic | 40.0% | |
| TATTTGACTAAGTGGTGGCA+AGG | + | chr3.2:66321030-66321049 | MS.gene052641:intron | 40.0% | |
| TCCGTTAATCACCTTCATGA+AGG | + | chr3.2:66318948-66318967 | MS.gene052641:intron | 40.0% | |
| TGAAAAGAAGGCAACCTAGT+GGG | - | chr3.2:66320538-66320557 | None:intergenic | 40.0% | |
| TGAATCCTGGCATTTCAAAC+TGG | - | chr3.2:66322221-66322240 | None:intergenic | 40.0% | |
| TGGTGATAGGATTATGGGTT+TGG | + | chr3.2:66318215-66318234 | MS.gene052641:CDS | 40.0% | |
| TGTGAAATGTGAGTGGATAG+TGG | + | chr3.2:66319435-66319454 | MS.gene052641:intron | 40.0% | |
| TTATACCCATCGTTACAAGG+AGG | + | chr3.2:66319926-66319945 | MS.gene052641:CDS | 40.0% | |
| TTCTAGCATGTTAGGAAGGA+TGG | + | chr3.2:66318814-66318833 | MS.gene052641:intron | 40.0% | |
| ! | AGGAGAAAGCTGTGGATTAT+AGG | + | chr3.2:66318376-66318395 | MS.gene052641:CDS | 40.0% |
| ! | CATGGCAGATTTTCTTCTGA+GGG | + | chr3.2:66322074-66322093 | MS.gene052641:CDS | 40.0% |
| ! | CATTTTTCCTTCCAACAGAG+TGG | - | chr3.2:66321769-66321788 | None:intergenic | 40.0% |
| ! | CGCAACTTGTTTCAAAGCTA+TGG | - | chr3.2:66319981-66320000 | None:intergenic | 40.0% |
| ! | CTGACAATCATCTTTTGCTC+TGG | + | chr3.2:66320101-66320120 | MS.gene052641:CDS | 40.0% |
| ! | GTCTTTTGAATCCTGGTGAT+AGG | + | chr3.2:66318202-66318221 | MS.gene052641:CDS | 40.0% |
| ! | TTATACTCATGGTGGGAAGA+AGG | + | chr3.2:66318272-66318291 | MS.gene052641:CDS | 40.0% |
| ! | TTGTCCGGTTTTCATGGTAA+AGG | + | chr3.2:66319072-66319091 | MS.gene052641:intron | 40.0% |
| ! | TTTTTCCTTCCAACAGAGTG+GGG | - | chr3.2:66321767-66321786 | None:intergenic | 40.0% |
| !! | AAGACTTTTGTGGGTTGTTG+AGG | - | chr3.2:66319783-66319802 | None:intergenic | 40.0% |
| !! | AAGGATGACTTGGTTGTTAG+GGG | - | chr3.2:66319507-66319526 | None:intergenic | 40.0% |
| !! | AGAAATCGGGTTGAGACATT+TGG | + | chr3.2:66322192-66322211 | MS.gene052641:CDS | 40.0% |
| !! | ATGGGTGTCCTTTTAACTCA+AGG | + | chr3.2:66320829-66320848 | MS.gene052641:intron | 40.0% |
| !! | GATGAAGTTGTTGATGGTGA+TGG | + | chr3.2:66317724-66317743 | MS.gene052641:CDS | 40.0% |
| !! | TCATATCAGTGGTCTTGTTG+CGG | + | chr3.2:66318506-66318525 | MS.gene052641:CDS | 40.0% |
| !! | TGAATTTGTTGGAGATGGCA+TGG | - | chr3.2:66317572-66317591 | None:intergenic | 40.0% |
| !!! | AGCTGTTTTGATGTGTGACA+TGG | + | chr3.2:66318482-66318501 | MS.gene052641:CDS | 40.0% |
| AAAAGTCTTCGAGGTCCAAG+AGG | + | chr3.2:66319794-66319813 | MS.gene052641:CDS | 45.0% | |
| AAGCGTGTCAAGTCATGCTA+TGG | - | chr3.2:66319681-66319700 | None:intergenic | 45.0% | |
| AAGTATTCAGAGGGAATGCC+GGG | + | chr3.2:66318027-66318046 | MS.gene052641:CDS | 45.0% | |
| ACAACCCACAAAAGTCTTCG+AGG | + | chr3.2:66319785-66319804 | MS.gene052641:CDS | 45.0% | |
| ACTCCTGCAATGACATCAAG+AGG | + | chr3.2:66322027-66322046 | MS.gene052641:CDS | 45.0% | |
| AGAACAAAGCCTTGCTTCCT+TGG | - | chr3.2:66319851-66319870 | None:intergenic | 45.0% | |
| ATGTCTCAACCCGATTTCTG+AGG | - | chr3.2:66322191-66322210 | None:intergenic | 45.0% | |
| CAAAACTCAACAACAGAGGC+TGG | - | chr3.2:66321096-66321115 | None:intergenic | 45.0% | |
| CCGGGAGCGAAATATTATAC+CGG | + | chr3.2:66318045-66318064 | MS.gene052641:CDS | 45.0% | |
| CCGGTATAATATTTCGCTCC+CGG | - | chr3.2:66318048-66318067 | None:intergenic | 45.0% | |
| CCTCAGAAGAAAATCTGCCA+TGG | - | chr3.2:66322076-66322095 | None:intergenic | 45.0% | |
| CGAAAGAGCCAAAAAAGGTG+AGG | - | chr3.2:66318852-66318871 | None:intergenic | 45.0% | |
| CTAGAGAATGGGATTATGCG+AGG | + | chr3.2:66318433-66318452 | MS.gene052641:CDS | 45.0% | |
| CTCGCATAATCCCATTCTCT+AGG | - | chr3.2:66318435-66318454 | None:intergenic | 45.0% | |
| GACATCAAGAGGCTGTTTAG+AGG | + | chr3.2:66322038-66322057 | MS.gene052641:CDS | 45.0% | |
| GAGCAGCAATGTGATTGTTG+TGG | - | chr3.2:66319955-66319974 | None:intergenic | 45.0% | |
| GCAGCAATGTGATTGTTGTG+GGG | - | chr3.2:66319953-66319972 | None:intergenic | 45.0% | |
| TAAGGTTGAGGAGAAAGCTG+TGG | + | chr3.2:66318368-66318387 | MS.gene052641:CDS | 45.0% | |
| TCAGGATCAGCAACACTCAA+AGG | - | chr3.2:66317889-66317908 | None:intergenic | 45.0% | |
| TGAAGGAAACTAATTGCCGG+GGG | + | chr3.2:66318965-66318984 | MS.gene052641:intron | 45.0% | |
| TGTGACATGGCTCATATCAG+TGG | + | chr3.2:66318495-66318514 | MS.gene052641:CDS | 45.0% | |
| TTATCACTCTTCTCCTCCTG+AGG | + | chr3.2:66320573-66320592 | MS.gene052641:intron | 45.0% | |
| TTATTCCCCACTCTGTTGGA+AGG | + | chr3.2:66321759-66321778 | MS.gene052641:intron | 45.0% | |
| ! | AAGCCTTGCTTCCTTGGTTT+TGG | - | chr3.2:66319845-66319864 | None:intergenic | 45.0% |
| ! | CCATGGCAGATTTTCTTCTG+AGG | + | chr3.2:66322073-66322092 | MS.gene052641:CDS | 45.0% |
| ! | TCATGGTGGGAAGAAGGTTT+CGG | + | chr3.2:66318278-66318297 | MS.gene052641:CDS | 45.0% |
| ! | TCTGGTGGACATTTGAGTCA+TGG | + | chr3.2:66318246-66318265 | MS.gene052641:CDS | 45.0% |
| ! | TCTTCTGGAGGAGTGAGAAT+CGG | + | chr3.2:66321351-66321370 | MS.gene052641:CDS | 45.0% |
| ! | TGGACCTCGAAGACTTTTGT+GGG | - | chr3.2:66319792-66319811 | None:intergenic | 45.0% |
| ! | TTGGACCTCGAAGACTTTTG+TGG | - | chr3.2:66319793-66319812 | None:intergenic | 45.0% |
| ! | TTGTTAGGGGTGTGGGATAT+AGG | - | chr3.2:66319494-66319513 | None:intergenic | 45.0% |
| !! | ATTCTAAGGCTGTGAGTTGG+GGG | + | chr3.2:66317857-66317876 | MS.gene052641:CDS | 45.0% |
| !! | CTCTGGGATATAACTGCACT+CGG | + | chr3.2:66320118-66320137 | MS.gene052641:CDS | 45.0% |
| !! | GATGGTGATGGTGAAGAAGA+AGG | + | chr3.2:66317736-66317755 | MS.gene052641:CDS | 45.0% |
| !! | GATTCTAAGGCTGTGAGTTG+GGG | + | chr3.2:66317856-66317875 | MS.gene052641:CDS | 45.0% |
| !! | GGATTCTAAGGCTGTGAGTT+GGG | + | chr3.2:66317855-66317874 | MS.gene052641:CDS | 45.0% |
| !! | TGGATTCTAAGGCTGTGAGT+TGG | + | chr3.2:66317854-66317873 | MS.gene052641:CDS | 45.0% |
| !! | TTTTGTTTGCAGGGCTGTGA+TGG | + | chr3.2:66317978-66317997 | MS.gene052641:CDS | 45.0% |
| !!! | AGAGGACGATTTTGAGACCA+TGG | + | chr3.2:66322056-66322075 | MS.gene052641:CDS | 45.0% |
| !!! | TCCTTGGTTTTGGCCCTTTT+CGG | - | chr3.2:66319835-66319854 | None:intergenic | 45.0% |
| ACCGAAAAGGGCCAAAACCA+AGG | + | chr3.2:66319831-66319850 | MS.gene052641:CDS | 50.0% | |
| CAGCCTCTTGATGTCATTGC+AGG | - | chr3.2:66322033-66322052 | None:intergenic | 50.0% | |
| CAGGCAAATAGTAAACCCCC+CGG | - | chr3.2:66318984-66319003 | None:intergenic | 50.0% | |
| CGCCATGAAAGAGAAGGGTT+TGG | - | chr3.2:66317646-66317665 | None:intergenic | 50.0% | |
| CTTGGCAAATAGTCCTCAGG+AGG | - | chr3.2:66320589-66320608 | None:intergenic | 50.0% | |
| GAAGGAAACTAATTGCCGGG+GGG | + | chr3.2:66318966-66318985 | MS.gene052641:intron | 50.0% | |
| GCTCTTATTCCCCACTCTGT+TGG | + | chr3.2:66321755-66321774 | MS.gene052641:intron | 50.0% | |
| ! | CACAAGCGGGTTTATCACTG+GGG | + | chr3.2:66317536-66317555 | MS.gene052641:CDS | 50.0% |
| ! | GACTTGGTTGTTAGGGGTGT+GGG | - | chr3.2:66319501-66319520 | None:intergenic | 50.0% |
| ! | GCACAAGCGGGTTTATCACT+GGG | + | chr3.2:66317535-66317554 | MS.gene052641:CDS | 50.0% |
| ! | TGCACAAGCGGGTTTATCAC+TGG | + | chr3.2:66317534-66317553 | MS.gene052641:CDS | 50.0% |
| !! | TGACTTGGTTGTTAGGGGTG+TGG | - | chr3.2:66319502-66319521 | None:intergenic | 50.0% |
| AGTCTTCGAGGTCCAAGAGG+AGG | + | chr3.2:66319797-66319816 | MS.gene052641:CDS | 55.0% | |
| ATGGGTTTGGATTCGGCGTC+TGG | + | chr3.2:66318228-66318247 | MS.gene052641:CDS | 55.0% | |
| GGGCCAAAACCAAGGAAGCA+AGG | + | chr3.2:66319839-66319858 | MS.gene052641:CDS | 55.0% | |
| GGGGACCTCCTTGTAACGAT+GGG | - | chr3.2:66319934-66319953 | None:intergenic | 55.0% | |
| TGGGGACCTCCTTGTAACGA+TGG | - | chr3.2:66319935-66319954 | None:intergenic | 55.0% | |
| TGGTGGGAAGAAGGTTTCGG+CGG | + | chr3.2:66318281-66318300 | MS.gene052641:CDS | 55.0% | |
| ! | GGCTCCCAGTTTGAAATGCC+AGG | + | chr3.2:66322213-66322232 | MS.gene052641:CDS | 55.0% |
| !! | AGGGCTGTGATGGAAGCACT+TGG | + | chr3.2:66317988-66318007 | MS.gene052641:CDS | 55.0% |
| !! | CAGTGGTCTTGTTGCGGCTA+AGG | + | chr3.2:66318512-66318531 | MS.gene052641:CDS | 55.0% |
| GGTTTGGATTCGGCGTCTGG+TGG | + | chr3.2:66318231-66318250 | MS.gene052641:CDS | 60.0% | |
| ! | GCGTGTCGCGGTGGATTCTA+AGG | + | chr3.2:66317843-66317862 | MS.gene052641:CDS | 60.0% |
| TGTTCCGGCGAAGCGTGTCG+CGG | + | chr3.2:66317831-66317850 | MS.gene052641:CDS | 65.0% | |
| TCCACCGCGACACGCTTCGC+CGG | - | chr3.2:66317838-66317857 | None:intergenic | 70.0% | |
| TCCGGCGAAGCGTGTCGCGG+TGG | + | chr3.2:66317834-66317853 | MS.gene052641:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 66317529 | 66322248 | 66317529 | ID=MS.gene052641 |
| chr3.2 | mRNA | 66317529 | 66322248 | 66317529 | ID=MS.gene052641.t1;Parent=MS.gene052641 |
| chr3.2 | exon | 66317529 | 66318533 | 66317529 | ID=MS.gene052641.t1.exon1;Parent=MS.gene052641.t1 |
| chr3.2 | CDS | 66317529 | 66318533 | 66317529 | ID=cds.MS.gene052641.t1;Parent=MS.gene052641.t1 |
| chr3.2 | exon | 66319743 | 66320148 | 66319743 | ID=MS.gene052641.t1.exon2;Parent=MS.gene052641.t1 |
| chr3.2 | CDS | 66319743 | 66320148 | 66319743 | ID=cds.MS.gene052641.t1;Parent=MS.gene052641.t1 |
| chr3.2 | exon | 66321280 | 66321372 | 66321280 | ID=MS.gene052641.t1.exon3;Parent=MS.gene052641.t1 |
| chr3.2 | CDS | 66321280 | 66321372 | 66321280 | ID=cds.MS.gene052641.t1;Parent=MS.gene052641.t1 |
| chr3.2 | exon | 66322025 | 66322248 | 66322025 | ID=MS.gene052641.t1.exon4;Parent=MS.gene052641.t1 |
| chr3.2 | CDS | 66322025 | 66322248 | 66322025 | ID=cds.MS.gene052641.t1;Parent=MS.gene052641.t1 |
| Gene Sequence |
| Protein sequence |
