AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064387

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064387.t1 MTR_8g043650 87.342 237 30 0 1 237 1 237 2.34e-157 436
MS.gene064387.t1 MTR_3g052920 92.661 218 16 0 1 218 1 218 9.58e-153 424
MS.gene064387.t1 MTR_1g105920 89.908 218 22 0 1 218 1 218 2.80e-149 415
MS.gene064387.t1 MTR_2g030740 89.451 237 25 0 1 237 1 237 8.49e-149 414
MS.gene064387.t1 MTR_1g105910 86.920 237 31 0 1 237 1 237 2.80e-148 413
MS.gene064387.t1 MTR_1g012570 86.076 237 33 0 1 237 1 237 1.01e-141 396
MS.gene064387.t1 MTR_1g105905 79.545 220 45 0 18 237 1 220 2.28e-132 372
MS.gene064387.t1 MTR_3g052870 83.105 219 18 1 1 219 1 200 1.11e-130 367
MS.gene064387.t1 MTR_1g108510 73.191 235 45 3 1 225 1 227 1.14e-119 340
MS.gene064387.t1 MTR_0121s0080 70.886 237 68 1 1 237 1 236 8.00e-119 338
MS.gene064387.t1 MTR_3g030770 72.340 235 47 3 1 225 1 227 9.90e-119 338
MS.gene064387.t1 MTR_1g106070 87.363 182 23 0 1 182 1 182 2.18e-118 335
MS.gene064387.t1 MTR_5g055100 66.245 237 80 0 1 237 1 237 1.34e-117 335
MS.gene064387.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 1.46e-116 333
MS.gene064387.t1 MTR_1g075600 71.111 225 65 0 1 225 1 225 3.03e-116 332
MS.gene064387.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 5.72e-116 331
MS.gene064387.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 1.69e-115 330
MS.gene064387.t1 MTR_2g093190 71.489 235 49 3 1 225 1 227 2.63e-114 327
MS.gene064387.t1 MTR_1g108580 70.213 235 52 3 1 225 1 227 1.94e-112 322
MS.gene064387.t1 MTR_5g045560 68.354 237 75 0 1 237 1 237 3.67e-111 319
MS.gene064387.t1 MTR_5g053390 67.111 225 74 0 1 225 1 225 7.71e-108 310
MS.gene064387.t1 MTR_7g062350 66.368 223 73 2 16 237 27 248 7.26e-102 296
MS.gene064387.t1 MTR_1g075570 64.607 178 49 1 18 195 1 164 2.28e-69 210
MS.gene064387.t1 MTR_0121s0100 78.125 128 28 0 1 128 1 128 9.41e-69 207
MS.gene064387.t1 MTR_3g030780 74.419 129 33 0 1 129 1 129 2.13e-64 196
MS.gene064387.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 4.27e-64 198
MS.gene064387.t1 MTR_3g067910 70.588 102 30 0 21 122 2 103 5.62e-47 151
MS.gene064387.t1 MTR_2g105290 39.181 171 94 2 5 172 8 171 3.33e-39 134
MS.gene064387.t1 MTR_8g086290 39.884 173 90 3 5 170 8 173 6.07e-39 133
MS.gene064387.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 2.07e-34 121
MS.gene064387.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 2.07e-34 121
MS.gene064387.t1 MTR_1g108500 59.292 113 23 2 8 118 94 185 1.37e-31 118
MS.gene064387.t1 MTR_4g127140 36.957 184 96 4 5 175 8 184 2.66e-29 108
MS.gene064387.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.64e-27 100
MS.gene064387.t1 MTR_3g067915 53.191 94 44 0 33 126 3 96 1.50e-25 96.3
MS.gene064387.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.08e-24 96.7
MS.gene064387.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 2.44e-24 95.9
MS.gene064387.t1 MTR_1g054265 45.946 111 57 2 9 118 2 110 6.52e-24 94.4
MS.gene064387.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.51e-23 93.2
MS.gene064387.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.85e-23 93.6
MS.gene064387.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 2.18e-23 94.4
MS.gene064387.t1 MTR_8g046350 40.152 132 67 3 9 135 2 126 9.37e-23 91.3
MS.gene064387.t1 MTR_8g051580 45.545 101 53 1 9 109 2 100 9.94e-23 91.7
MS.gene064387.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.71e-20 85.1
MS.gene064387.t1 MTR_4g093970 34.545 165 85 3 10 153 29 191 1.54e-19 84.3
MS.gene064387.t1 MTR_3g452380 33.333 168 89 5 3 150 11 175 3.56e-19 83.6
MS.gene064387.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 3.85e-19 83.2
MS.gene064387.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.63e-18 79.7
MS.gene064387.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 3.47e-18 80.1
MS.gene064387.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 3.57e-18 80.9
MS.gene064387.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.45e-17 79.0
MS.gene064387.t1 MTR_5g032520 28.638 213 128 6 9 201 2 210 2.08e-17 78.6
MS.gene064387.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 2.31e-17 79.0
MS.gene064387.t1 MTR_5g032150 29.858 211 129 6 9 201 2 211 2.35e-17 78.6
MS.gene064387.t1 MTR_2g017865 31.148 183 97 4 9 165 17 196 2.58e-17 79.0
MS.gene064387.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.05e-17 78.6
MS.gene064387.t1 MTR_8g022970 34.356 163 92 4 8 163 17 171 3.15e-17 77.0
MS.gene064387.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 6.43e-17 78.6
MS.gene064387.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.09e-16 75.9
MS.gene064387.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.16e-16 77.0
MS.gene064387.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.21e-16 76.6
MS.gene064387.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.48e-16 75.9
MS.gene064387.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.73e-16 75.9
MS.gene064387.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.23e-16 75.9
MS.gene064387.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.12e-16 76.3
MS.gene064387.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.57e-16 75.5
MS.gene064387.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 8.72e-16 75.5
MS.gene064387.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 9.82e-16 69.7
MS.gene064387.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.14e-15 74.3
MS.gene064387.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.25e-15 73.9
MS.gene064387.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.26e-15 73.6
MS.gene064387.t1 MTR_3g437790 33.813 139 83 4 26 159 30 164 1.29e-15 72.8
MS.gene064387.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.32e-15 73.9
MS.gene064387.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.55e-15 73.6
MS.gene064387.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.73e-15 72.4
MS.gene064387.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 2.77e-15 72.4
MS.gene064387.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.28e-15 69.3
MS.gene064387.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 5.99e-15 72.0
MS.gene064387.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.39e-15 72.0
MS.gene064387.t1 MTR_3g109930 32.639 144 81 3 27 163 20 154 8.89e-15 70.5
MS.gene064387.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.75e-14 70.9
MS.gene064387.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 2.18e-14 66.2
MS.gene064387.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 2.54e-14 70.1
MS.gene064387.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.38e-14 68.9
MS.gene064387.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.11e-14 69.7
MS.gene064387.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.30e-14 68.2
MS.gene064387.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 6.62e-14 69.3
MS.gene064387.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 6.66e-14 69.3
MS.gene064387.t1 MTR_4g108720 29.545 176 102 9 9 172 2 167 1.00e-13 69.7
MS.gene064387.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 1.12e-13 68.6
MS.gene064387.t1 MTR_3g113030 27.586 174 104 4 9 181 2 154 1.66e-13 67.8
MS.gene064387.t1 MTR_4g093030 47.541 61 32 0 9 69 2 62 3.04e-12 63.2
MS.gene064387.t1 MTR_4g036050 28.750 160 101 5 9 158 2 158 1.72e-11 61.6
MS.gene064387.t1 MTR_4g051538 33.103 145 82 3 5 147 5 136 1.79e-11 62.4
MS.gene064387.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.94e-11 61.6
MS.gene064387.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.96e-11 61.2
MS.gene064387.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.28e-11 61.6
MS.gene064387.t1 MTR_2g045020 31.288 163 84 7 7 159 21 165 2.94e-11 60.8
MS.gene064387.t1 MTR_1g041615 44.156 77 42 1 20 95 17 93 5.58e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064387.t1 AT5G60440 54.787 188 78 3 5 189 3 186 6.54e-64 201
MS.gene064387.t1 AT2G24840 49.080 163 72 4 6 162 60 217 1.84e-44 150
MS.gene064387.t1 AT1G01530 42.708 192 98 4 4 192 2 184 1.04e-42 145
MS.gene064387.t1 AT1G65360 40.212 189 106 3 5 192 3 185 5.20e-42 142
MS.gene064387.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.77e-39 137
MS.gene064387.t1 AT2G34440 45.299 117 55 2 9 121 2 113 7.02e-27 102
MS.gene064387.t1 AT3G66656 42.520 127 69 1 9 131 2 128 4.04e-26 100
MS.gene064387.t1 AT3G04100 32.716 162 105 3 2 159 7 168 1.52e-25 99.8
MS.gene064387.t1 AT1G72350 33.553 152 68 3 9 160 43 161 6.92e-22 90.5
MS.gene064387.t1 AT4G22950 41.818 110 61 1 10 119 3 109 9.85e-20 83.6
MS.gene064387.t1 AT1G28460 29.193 161 107 2 5 158 4 164 1.27e-19 83.6
MS.gene064387.t1 AT4G22950 41.818 110 61 1 10 119 3 109 1.91e-19 84.0
MS.gene064387.t1 AT4G22950 41.818 110 61 1 10 119 3 109 1.91e-19 84.0
MS.gene064387.t1 AT4G18960 31.950 241 132 10 5 226 15 242 2.30e-19 84.3
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.43e-19 83.6
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.91e-19 83.6
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.25e-19 83.6
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 12 97 3.86e-19 83.6
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 28 113 5.99e-19 83.2
MS.gene064387.t1 AT2G45660 52.941 68 32 0 10 77 3 70 8.87e-19 80.5
MS.gene064387.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.09e-18 82.4
MS.gene064387.t1 AT4G09960 46.512 86 45 1 9 93 97 182 1.78e-18 83.2
MS.gene064387.t1 AT1G29962 29.341 167 102 4 5 165 4 160 2.13e-18 80.5
MS.gene064387.t1 AT2G45660 52.941 68 32 0 10 77 3 70 2.74e-18 80.9
MS.gene064387.t1 AT2G22540 39.130 138 64 5 9 132 2 133 5.91e-18 80.5
MS.gene064387.t1 AT2G22540 39.130 138 64 5 9 132 2 133 5.91e-18 80.5
MS.gene064387.t1 AT4G24540 34.211 152 75 3 9 156 2 132 1.67e-17 78.6
MS.gene064387.t1 AT3G61120 31.250 160 94 4 9 160 2 153 2.53e-17 78.6
MS.gene064387.t1 AT2G42830 47.368 76 40 0 1 76 9 84 2.74e-17 78.6
MS.gene064387.t1 AT2G42830 47.368 76 40 0 1 76 9 84 2.80e-17 78.6
MS.gene064387.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.96e-17 77.0
MS.gene064387.t1 AT3G58780 50.704 71 35 0 6 76 14 84 3.61e-17 78.2
MS.gene064387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.61e-17 75.9
MS.gene064387.t1 AT3G58780 50.704 71 35 0 6 76 20 90 3.87e-17 78.2
MS.gene064387.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.01e-17 77.4
MS.gene064387.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.91e-17 76.6
MS.gene064387.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.13e-17 77.0
MS.gene064387.t1 AT3G58780 50.704 71 35 0 6 76 14 84 7.23e-17 78.2
MS.gene064387.t1 AT5G51870 53.731 67 31 0 10 76 13 79 8.71e-17 77.0
MS.gene064387.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.02e-16 76.6
MS.gene064387.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.05e-16 73.6
MS.gene064387.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.09e-16 76.3
MS.gene064387.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.09e-16 76.6
MS.gene064387.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.11e-16 75.1
MS.gene064387.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.23e-16 75.5
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.24e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.24e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.24e-16 74.7
MS.gene064387.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.43e-16 77.0
MS.gene064387.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.54e-16 77.8
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.65e-16 74.3
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.65e-16 74.3
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.65e-16 74.3
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.65e-16 74.3
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.65e-16 74.3
MS.gene064387.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.76e-16 75.1
MS.gene064387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.80e-16 76.3
MS.gene064387.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.80e-16 76.3
MS.gene064387.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.84e-16 75.1
MS.gene064387.t1 AT4G11880 50.000 72 35 1 10 80 3 74 1.84e-16 75.1
MS.gene064387.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.89e-16 75.5
MS.gene064387.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.95e-16 76.6
MS.gene064387.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.98e-16 77.4
MS.gene064387.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.18e-16 75.1
MS.gene064387.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.54e-16 76.3
MS.gene064387.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.98e-16 75.1
MS.gene064387.t1 AT4G11880 50.000 72 35 1 10 80 3 74 3.98e-16 75.1
MS.gene064387.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.25e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.30e-16 74.3
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.30e-16 74.3
MS.gene064387.t1 AT1G28450 26.857 175 122 3 5 173 4 178 4.45e-16 73.9
MS.gene064387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.49e-16 75.5
MS.gene064387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.49e-16 75.5
MS.gene064387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.49e-16 75.5
MS.gene064387.t1 AT1G77950 46.053 76 39 2 9 83 2 76 4.49e-16 75.5
MS.gene064387.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.57e-16 75.1
MS.gene064387.t1 AT1G17310 53.165 79 35 1 8 86 47 123 4.61e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.81e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.81e-16 74.7
MS.gene064387.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.81e-16 74.7
MS.gene064387.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.55e-16 74.7
MS.gene064387.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.55e-16 74.7
MS.gene064387.t1 AT1G17310 53.165 79 35 1 8 86 58 134 5.70e-16 74.7
MS.gene064387.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.77e-16 74.3
MS.gene064387.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.21e-16 74.7
MS.gene064387.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.05e-15 74.3
MS.gene064387.t1 AT3G30260 29.091 165 99 4 9 172 2 149 1.09e-15 74.3
MS.gene064387.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.10e-15 74.3
MS.gene064387.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.53e-15 73.6
MS.gene064387.t1 AT2G22540 38.406 138 60 6 9 132 2 128 2.33e-15 73.2
MS.gene064387.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.51e-15 73.2
MS.gene064387.t1 AT5G20240 47.143 70 35 1 9 76 2 71 3.76e-15 70.9
MS.gene064387.t1 AT2G14210 46.377 69 36 1 9 76 2 70 4.42e-15 72.4
MS.gene064387.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.48e-15 72.8
MS.gene064387.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.06e-15 71.6
MS.gene064387.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.89e-15 72.0
MS.gene064387.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.07e-14 72.0
MS.gene064387.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.22e-14 71.6
MS.gene064387.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.37e-14 70.1
MS.gene064387.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.51e-14 70.1
MS.gene064387.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.79e-14 70.9
MS.gene064387.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.10e-14 70.5
MS.gene064387.t1 AT5G23260 44.318 88 43 2 9 90 2 89 2.10e-14 70.9
MS.gene064387.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.22e-14 70.9
MS.gene064387.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.48e-14 69.3
MS.gene064387.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.71e-14 69.3
MS.gene064387.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.88e-14 69.3
MS.gene064387.t1 AT2G03710 45.714 70 36 1 9 76 2 71 3.53e-14 68.9
MS.gene064387.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.47e-14 68.9
MS.gene064387.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.66e-14 69.7
MS.gene064387.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.87e-14 68.6
MS.gene064387.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.57e-14 68.6
MS.gene064387.t1 AT1G24260 46.377 69 36 1 9 76 2 70 7.66e-14 69.3
MS.gene064387.t1 AT1G24260 46.377 69 36 1 9 76 2 70 8.40e-14 68.9
MS.gene064387.t1 AT1G24260 46.377 69 36 1 9 76 2 70 8.51e-14 68.9
MS.gene064387.t1 AT2G03710 45.714 70 36 1 9 76 2 71 8.75e-14 69.3
MS.gene064387.t1 AT1G47760 34.483 116 61 3 9 123 2 103 9.08e-14 67.8
MS.gene064387.t1 AT2G03710 45.714 70 36 1 9 76 2 71 9.12e-14 68.9
MS.gene064387.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.49e-13 67.8
MS.gene064387.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.45e-13 65.9
MS.gene064387.t1 AT1G18750 27.228 202 123 7 9 188 2 201 3.44e-13 68.6
MS.gene064387.t1 AT1G18750 27.228 202 123 7 9 188 2 201 3.85e-13 68.6
MS.gene064387.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.51e-13 66.2
MS.gene064387.t1 AT5G65070 42.029 69 39 1 9 76 2 70 8.97e-13 65.5
MS.gene064387.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.16e-13 65.9
MS.gene064387.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.45e-12 66.6
MS.gene064387.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.45e-12 66.6
MS.gene064387.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.45e-12 66.6
MS.gene064387.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.64e-12 66.6
MS.gene064387.t1 AT1G69540 33.846 130 79 5 9 134 2 128 2.32e-12 65.9
MS.gene064387.t1 AT1G69540 33.846 130 79 5 9 134 2 128 2.45e-12 65.9
MS.gene064387.t1 AT5G65070 47.368 57 30 0 9 65 2 58 4.24e-12 63.9
MS.gene064387.t1 AT1G18750 38.961 77 44 2 9 83 2 77 4.82e-12 65.1
MS.gene064387.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.09e-11 61.2
MS.gene064387.t1 AT1G46408 36.134 119 67 4 10 119 5 123 2.24e-11 62.4
MS.gene064387.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.29e-11 61.2
MS.gene064387.t1 AT2G26320 40.000 70 40 1 9 76 18 87 3.29e-11 58.9
MS.gene064387.t1 AT5G65080 43.548 62 35 0 1 62 1 62 6.19e-11 60.5
MS.gene064387.t1 AT5G27130 40.000 85 47 2 2 82 6 90 6.83e-11 61.2

Find 64 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTTTGGCTTCAACAATA+TGG 0.281947 3.1:+40018371 MS.gene064387:CDS
ATCTGAGCTTGTGGAGGATT+TGG 0.315191 3.1:-40018306 None:intergenic
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3.1:+40018120 MS.gene064387:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.1:-40017963 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.1:+40018199 MS.gene064387:CDS
AGACGGCCGAGACTCAATTT+TGG 0.343533 3.1:+40018100 MS.gene064387:CDS
TCTATGACCGTATCAACATT+AGG 0.346403 3.1:-40017916 None:intergenic
ATGTTGCAACCTCATTGGTT+TGG 0.406166 3.1:+40018357 MS.gene064387:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3.1:+40018130 MS.gene064387:CDS
ACCCTATGTTGCAACCTCAT+TGG 0.412021 3.1:+40018352 MS.gene064387:CDS
TGGTTTGGCTTCAACAATAT+GGG 0.414863 3.1:+40018372 MS.gene064387:CDS
TGTTGATAGGCTTGTAATCC+AGG 0.417213 3.1:+40018212 MS.gene064387:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3.1:+40018121 MS.gene064387:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3.1:-40018047 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.1:-40018154 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.1:+40018161 MS.gene064387:CDS
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.1:-40018133 None:intergenic
GTGGAGGATTTGGTTGATGA+TGG 0.460225 3.1:-40018296 None:intergenic
CTATGACCGTATCAACATTA+GGG 0.463178 3.1:-40017915 None:intergenic
TCTCGGCCGTCTTGCGCAAG+TGG 0.485406 3.1:-40018089 None:intergenic
GGGTTCTGATAAAACTGTGC+TGG 0.499287 3.1:-40018333 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.1:-40018132 None:intergenic
ACCAATGAGGTTGCAACATA+GGG 0.507520 3.1:-40018353 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.1:+40018035 MS.gene064387:CDS
GTAGCTGGTTGATCTGAGTC+AGG 0.512943 3.1:-40018032 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.513278 3.1:+40018131 MS.gene064387:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.1:-40018155 None:intergenic
ATGATGGAGAGGCATGTTTG+AGG 0.521462 3.1:-40018280 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.1:-40017833 None:intergenic
AACCAATGAGGTTGCAACAT+AGG 0.525962 3.1:-40018354 None:intergenic
GCTGGAAGCATCTGAGCTTG+TGG 0.533277 3.1:-40018315 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.1:-40017999 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.1:+40018155 MS.gene064387:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 3.1:-40018418 None:intergenic
TGGCCACCCTAATGTTGATA+CGG 0.542985 3.1:+40017909 MS.gene064387:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.1:-40017886 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.1:+40017797 MS.gene064387:CDS
GGAGGTGGATATGGACCCTC+CGG 0.560213 3.1:+40018399 MS.gene064387:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3.1:+40017932 MS.gene064387:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.1:+40017796 MS.gene064387:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.573538 3.1:-40018007 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.574024 3.1:-40018106 None:intergenic
GCTGAGCCACTTGCGCAAGA+CGG 0.576977 3.1:+40018083 MS.gene064387:CDS
GGTTTGGCTTCAACAATATG+GGG 0.578983 3.1:+40018373 MS.gene064387:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.1:+40017835 MS.gene064387:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.1:-40017848 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.1:+40017710 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.1:+40017706 None:intergenic
ATGTTTGAGTAGGAGCACCC+TGG 0.605264 3.1:-40018230 None:intergenic
CTTTCTTAAAGAGCCCACTA+CGG 0.614116 3.1:-40017810 None:intergenic
GGAAGCATCTGAGCTTGTGG+AGG 0.624119 3.1:-40018312 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.1:+40017952 MS.gene064387:CDS
GTTGATAGGCTTGTAATCCA+GGG 0.636489 3.1:+40018213 MS.gene064387:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.1:+40017972 MS.gene064387:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.1:-40017977 None:intergenic
GTTTGGCTTCAACAATATGG+GGG 0.642093 3.1:+40018374 MS.gene064387:CDS
GGATTTGGTTGATGATGGAG+AGG 0.642684 3.1:-40018291 None:intergenic
TTGTTGAAGCCAAACCAATG+AGG 0.650877 3.1:-40018366 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 3.1:-40018415 None:intergenic
TTTGGCTTCAACAATATGGG+GGG 0.656547 3.1:+40018375 MS.gene064387:CDS
TCGGATCAAAAGAATCCGGA+GGG 0.678771 3.1:-40018414 None:intergenic
TGACCGTATCAACATTAGGG+TGG 0.698195 3.1:-40017912 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.1:+40017721 MS.gene064387:CDS
GAGCAACATCTGCACCACAG+AGG 0.729838 3.1:-40017849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.1:40017750-40017769 None:intergenic 20.0%
! AAAAATGGAAATGTTTGAGT+AGG - chr3.1:40018243-40018262 None:intergenic 25.0%
! GAATTGTTTCCAAGAAAAAA+TGG - chr3.1:40018258-40018277 None:intergenic 25.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.1:40018157-40018176 None:intergenic 25.0%
!!! CAAACATTTCCATTTTTTCT+TGG + chr3.1:40018246-40018265 MS.gene064387:CDS 25.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.1:40018155-40018174 MS.gene064387:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.1:40018158-40018177 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.1:40017932-40017951 MS.gene064387:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.1:40018199-40018218 MS.gene064387:CDS 30.0%
CTATGACCGTATCAACATTA+GGG - chr3.1:40017918-40017937 None:intergenic 35.0%
TCTATGACCGTATCAACATT+AGG - chr3.1:40017919-40017938 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.1:40018161-40018180 MS.gene064387:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.1:40017966-40017985 None:intergenic 35.0%
! TGGTTTGGCTTCAACAATAT+GGG + chr3.1:40018372-40018391 MS.gene064387:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.1:40017965-40017984 None:intergenic 35.0%
!! TTGGTTTGGCTTCAACAATA+TGG + chr3.1:40018371-40018390 MS.gene064387:CDS 35.0%
AACCAATGAGGTTGCAACAT+AGG - chr3.1:40018357-40018376 None:intergenic 40.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.1:40017889-40017908 None:intergenic 40.0%
ACCAATGAGGTTGCAACATA+GGG - chr3.1:40018356-40018375 None:intergenic 40.0%
CTTTCTTAAAGAGCCCACTA+CGG - chr3.1:40017813-40017832 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.1:40017972-40017991 MS.gene064387:CDS 40.0%
TTGTTGAAGCCAAACCAATG+AGG - chr3.1:40018369-40018388 None:intergenic 40.0%
! ATGTTGCAACCTCATTGGTT+TGG + chr3.1:40018357-40018376 MS.gene064387:CDS 40.0%
! GGTTTGGCTTCAACAATATG+GGG + chr3.1:40018373-40018392 MS.gene064387:CDS 40.0%
! GTTGATAGGCTTGTAATCCA+GGG + chr3.1:40018213-40018232 MS.gene064387:CDS 40.0%
! GTTTGGCTTCAACAATATGG+GGG + chr3.1:40018374-40018393 MS.gene064387:CDS 40.0%
! TGTTGATAGGCTTGTAATCC+AGG + chr3.1:40018212-40018231 MS.gene064387:CDS 40.0%
! TTTGGCTTCAACAATATGGG+GGG + chr3.1:40018375-40018394 MS.gene064387:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.1:40017964-40017983 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.1:40017889-40017908 MS.gene064387:CDS 40.0%
ACCCTATGTTGCAACCTCAT+TGG + chr3.1:40018352-40018371 MS.gene064387:CDS 45.0%
AGCCCACCAAAATTGAGTCT+CGG - chr3.1:40018109-40018128 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG - chr3.1:40018309-40018328 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.1:40018130-40018149 MS.gene064387:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.1:40017980-40017999 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.1:40018131-40018150 MS.gene064387:CDS 45.0%
TGACCGTATCAACATTAGGG+TGG - chr3.1:40017915-40017934 None:intergenic 45.0%
TGGCCACCCTAATGTTGATA+CGG + chr3.1:40017909-40017928 MS.gene064387:CDS 45.0%
! ATGATGGAGAGGCATGTTTG+AGG - chr3.1:40018283-40018302 None:intergenic 45.0%
! GGGTTCTGATAAAACTGTGC+TGG - chr3.1:40018336-40018355 None:intergenic 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.1:40017741-40017760 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.1:40017876-40017895 MS.gene064387:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG - chr3.1:40018294-40018313 None:intergenic 45.0%
!! GTGGAGGATTTGGTTGATGA+TGG - chr3.1:40018299-40018318 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.1:40017961-40017980 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.1:40017960-40017979 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.1:40017851-40017870 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.1:40018035-40018054 MS.gene064387:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.1:40018135-40018154 None:intergenic 50.0%
GTAGCTGGTTGATCTGAGTC+AGG - chr3.1:40018035-40018054 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.1:40017721-40017740 MS.gene064387:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.1:40018050-40018069 None:intergenic 50.0%
TTCAACAATATGGGGGGAGG+AGG + chr3.1:40018381-40018400 MS.gene064387:CDS 50.0%
! AGACGGCCGAGACTCAATTT+TGG + chr3.1:40018100-40018119 MS.gene064387:CDS 50.0%
!! ATGTTTGAGTAGGAGCACCC+TGG - chr3.1:40018233-40018252 None:intergenic 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG + chr3.1:40018108-40018127 MS.gene064387:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.1:40017868-40017887 MS.gene064387:CDS 50.0%
!! GGCCGAGACTCAATTTTGGT+GGG + chr3.1:40018104-40018123 MS.gene064387:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG + chr3.1:40018384-40018403 MS.gene064387:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.1:40017835-40017854 MS.gene064387:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.1:40017952-40017971 MS.gene064387:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.1:40017852-40017871 None:intergenic 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.1:40018136-40018155 None:intergenic 55.0%
GGCTTCAACAATATGGGGGG+AGG + chr3.1:40018378-40018397 MS.gene064387:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.1:40017836-40017855 None:intergenic 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.1:40018010-40018029 None:intergenic 55.0%
! CGGCCGAGACTCAATTTTGG+TGG + chr3.1:40018103-40018122 MS.gene064387:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.1:40017796-40017815 MS.gene064387:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.1:40017797-40017816 MS.gene064387:CDS 55.0%
!! GCTGGAAGCATCTGAGCTTG+TGG - chr3.1:40018318-40018337 None:intergenic 55.0%
!! GGAAGCATCTGAGCTTGTGG+AGG - chr3.1:40018315-40018334 None:intergenic 55.0%
ATGGGGGGAGGAGGTGGATA+TGG + chr3.1:40018390-40018409 MS.gene064387:CDS 60.0%
GCTGAGCCACTTGCGCAAGA+CGG + chr3.1:40018083-40018102 MS.gene064387:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG + chr3.1:40018399-40018418 MS.gene064387:CDS 60.0%
!! GGTGGGCTGGTCCCATTGAT+GGG + chr3.1:40018121-40018140 MS.gene064387:CDS 60.0%
!! TGGTGGGCTGGTCCCATTGA+TGG + chr3.1:40018120-40018139 MS.gene064387:CDS 60.0%
TCTCGGCCGTCTTGCGCAAG+TGG - chr3.1:40018092-40018111 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.1:40018002-40018021 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 40017718 40018431 40017718 ID=MS.gene064387
chr3.1 mRNA 40017718 40018431 40017718 ID=MS.gene064387.t1;Parent=MS.gene064387
chr3.1 exon 40017718 40018431 40017718 ID=MS.gene064387.t1.exon1;Parent=MS.gene064387.t1
chr3.1 CDS 40017718 40018431 40017718 ID=cds.MS.gene064387.t1;Parent=MS.gene064387.t1
Gene Sequence

>MS.gene064387

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTTAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCTAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCACCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGAGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACATTTCCATTTTTTCTTGGAAACAATTCATCCTCAAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene064387.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTHLTQINQLLDIEKKRAEELSHLRKTAETQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSGFF