AlfalfaGEDB | MS.gene064387

M. sativa cultivar XinJiangDaYe / MS.gene064387

KEGG: -
GO: GO:0000976 GO:0000977 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064387.t1	XP_013469942.1	90.3	237	23	0	1	237	1	237	1.30E-119	439.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064387.t1	Q9FKK2	54.8	188	78	3	5	189	3	186	1.6e-49	197.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064387.t1	A0A072W118	90.3	237	23	0	1	237	1	237	9.3e-120	439.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene064387.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene064387	MS.gene22094	PPI
MS.gene064387	MS.gene068836	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064387.t1	MTR_8g043650	87.342	237	30	0	1	237	1	237	2.34e-157	436
MS.gene064387.t1	MTR_3g052920	92.661	218	16	0	1	218	1	218	9.58e-153	424
MS.gene064387.t1	MTR_1g105920	89.908	218	22	0	1	218	1	218	2.80e-149	415
MS.gene064387.t1	MTR_2g030740	89.451	237	25	0	1	237	1	237	8.49e-149	414
MS.gene064387.t1	MTR_1g105910	86.920	237	31	0	1	237	1	237	2.80e-148	413
MS.gene064387.t1	MTR_1g012570	86.076	237	33	0	1	237	1	237	1.01e-141	396
MS.gene064387.t1	MTR_1g105905	79.545	220	45	0	18	237	1	220	2.28e-132	372
MS.gene064387.t1	MTR_3g052870	83.105	219	18	1	1	219	1	200	1.11e-130	367
MS.gene064387.t1	MTR_1g108510	73.191	235	45	3	1	225	1	227	1.14e-119	340
MS.gene064387.t1	MTR_0121s0080	70.886	237	68	1	1	237	1	236	8.00e-119	338

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene064387.t1	AT5G60440	54.787	188	78	3	5	189	3	186	6.54e-64	201
MS.gene064387.t1	AT2G24840	49.080	163	72	4	6	162	60	217	1.84e-44	150
MS.gene064387.t1	AT1G01530	42.708	192	98	4	4	192	2	184	1.04e-42	145
MS.gene064387.t1	AT1G65360	40.212	189	106	3	5	192	3	185	5.20e-42	142
MS.gene064387.t1	AT4G36590	46.296	162	81	2	5	160	3	164	1.77e-39	137
MS.gene064387.t1	AT2G34440	45.299	117	55	2	9	121	2	113	7.02e-27	102
MS.gene064387.t1	AT3G66656	42.520	127	69	1	9	131	2	128	4.04e-26	100
MS.gene064387.t1	AT3G04100	32.716	162	105	3	2	159	7	168	1.52e-25	99.8
MS.gene064387.t1	AT1G72350	33.553	152	68	3	9	160	43	161	6.92e-22	90.5
MS.gene064387.t1	AT4G22950	41.818	110	61	1	10	119	3	109	9.85e-20	83.6

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Find 64 sgRNAs with CRISPR-Local

Find 78 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCAATGAGGTTGCAACAT+AGG	0.525962	3.1:-40018354	None:intergenic
AACGAAAATACCTTCTCTCC+AGG	0.551818	3.1:-40017886	None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG	0.525840	3.1:-40017833	None:intergenic
ACCAATGAGGTTGCAACATA+GGG	0.507520	3.1:-40018353	None:intergenic
ACCCTATGTTGCAACCTCAT+TGG	0.412021	3.1:+40018352	MS.gene064387:CDS
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	3.1:+40017796	MS.gene064387:CDS
AGACGGCCGAGACTCAATTT+TGG	0.343533	3.1:+40018100	MS.gene064387:CDS
AGCAACATCTGCACCACAGA+GGG	0.595144	3.1:-40017848	None:intergenic
AGCCCACCAAAATTGAGTCT+CGG	0.574024	3.1:-40018106	None:intergenic
AGTATTGAGCTCGCGCACGT+TGG	0.573538	3.1:-40018007	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAACTTGAATTATTCAAGA+AGG	+	chr3.1:40018155-40018174	MS.gene064387:CDS	30.0%
CCTTCTTGAATAATTCAAGT+TGG	-	chr3.1:40018158-40018177	None:intergenic	30.0%
TCATAGATCGTTATCTATCT+CGG	+	chr3.1:40017932-40017951	MS.gene064387:CDS	30.0%
TTGTTGATCATCATGTTGAT+AGG	+	chr3.1:40018199-40018218	MS.gene064387:CDS	30.0%
CTATGACCGTATCAACATTA+GGG	-	chr3.1:40017918-40017937	None:intergenic	35.0%
TCTATGACCGTATCAACATT+AGG	-	chr3.1:40017919-40017938	None:intergenic	35.0%
TGAATTATTCAAGAAGGCTC+TGG	+	chr3.1:40018161-40018180	MS.gene064387:CDS	35.0%
AACCAATGAGGTTGCAACAT+AGG	-	chr3.1:40018357-40018376	None:intergenic	40.0%
AACGAAAATACCTTCTCTCC+AGG	-	chr3.1:40017889-40017908	None:intergenic	40.0%
ACCAATGAGGTTGCAACATA+GGG	-	chr3.1:40018356-40018375	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	40017718	40018431	40017718	ID=MS.gene064387
chr3.1	mRNA	40017718	40018431	40017718	ID=MS.gene064387.t1;Parent=MS.gene064387
chr3.1	exon	40017718	40018431	40017718	ID=MS.gene064387.t1.exon1;Parent=MS.gene064387.t1
chr3.1	CDS	40017718	40018431	40017718	ID=cds.MS.gene064387.t1;Parent=MS.gene064387.t1

Gene Sequence

>MS.gene064387

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTTAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCTAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCACCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGAGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACATTTCCATTTTTTCTTGGAAACAATTCATCCTCAAACATGCCTCTCCATCATCAACCAAATCCTCCACAAGCTCAGATGCTTCCAGCACAGTTTTATCAGAACCCTATGTTGCAACCTCATTGGTTTGGCTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA

Protein sequence

>MS.gene064387.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTHLTQINQLLDIEKKRAEELSHLRKTAETQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVIQGAPTQTFPFFLGNNSSSNMPLHHQPNPPQAQMLPAQFYQNPMLQPHWFGFNNMGGGGGYGPSGFF