AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064389

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064389.t1 MTR_3g052920 92.982 171 12 0 1 171 1 171 5.68e-119 336
MS.gene064389.t1 MTR_1g105920 91.228 171 15 0 1 171 1 171 7.18e-117 330
MS.gene064389.t1 MTR_1g105910 90.058 171 17 0 1 171 1 171 7.92e-116 328
MS.gene064389.t1 MTR_2g030740 90.058 171 17 0 1 171 1 171 3.36e-114 324
MS.gene064389.t1 MTR_8g043650 88.889 171 19 0 1 171 1 171 1.28e-113 322
MS.gene064389.t1 MTR_1g106070 88.304 171 20 0 1 171 1 171 2.94e-112 317
MS.gene064389.t1 MTR_1g012570 87.135 171 22 0 1 171 1 171 3.90e-110 313
MS.gene064389.t1 MTR_1g108510 78.916 166 35 0 1 166 1 166 2.09e-96 278
MS.gene064389.t1 MTR_3g030770 79.518 166 34 0 1 166 1 166 3.04e-96 278
MS.gene064389.t1 MTR_3g052870 81.287 171 13 1 1 171 1 152 2.84e-95 275
MS.gene064389.t1 MTR_1g105905 81.169 154 29 0 18 171 1 154 9.87e-93 269
MS.gene064389.t1 MTR_2g093190 77.108 166 38 0 1 166 1 166 1.75e-91 266
MS.gene064389.t1 MTR_1g108580 77.108 166 38 0 1 166 1 166 1.23e-90 264
MS.gene064389.t1 MTR_0121s0080 74.854 171 43 0 1 171 1 171 1.95e-87 256
MS.gene064389.t1 MTR_1g075600 71.765 170 48 0 1 170 1 170 2.60e-86 253
MS.gene064389.t1 MTR_5g045560 70.175 171 51 0 1 171 1 171 4.85e-86 252
MS.gene064389.t1 MTR_1g077360 70.588 170 50 0 1 170 1 170 7.04e-86 252
MS.gene064389.t1 MTR_2g085280 68.639 169 53 0 1 169 1 169 8.89e-83 244
MS.gene064389.t1 MTR_2g085250 68.639 169 53 0 1 169 1 169 9.92e-83 244
MS.gene064389.t1 MTR_5g055100 67.456 169 55 0 1 169 1 169 1.77e-82 243
MS.gene064389.t1 MTR_5g053390 68.047 169 54 0 1 169 1 169 1.49e-79 236
MS.gene064389.t1 MTR_7g062350 68.790 157 48 1 16 171 27 183 5.62e-71 214
MS.gene064389.t1 MTR_0121s0100 78.125 128 28 0 1 128 1 128 7.75e-71 210
MS.gene064389.t1 MTR_3g030780 74.419 129 33 0 1 129 1 129 4.01e-66 198
MS.gene064389.t1 MTR_3g080940 58.442 154 64 0 7 160 7 160 2.20e-65 199
MS.gene064389.t1 MTR_1g075570 62.745 153 43 1 18 170 1 139 8.09e-55 171
MS.gene064389.t1 MTR_3g067910 69.903 103 31 0 21 123 2 104 4.60e-48 152
MS.gene064389.t1 MTR_8g086290 39.655 174 91 3 5 171 8 174 2.83e-40 134
MS.gene064389.t1 MTR_2g105290 40.000 170 92 2 5 171 8 170 3.57e-40 134
MS.gene064389.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 2.68e-35 121
MS.gene064389.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 2.68e-35 121
MS.gene064389.t1 MTR_1g108500 61.538 104 19 1 22 125 110 192 1.00e-32 119
MS.gene064389.t1 MTR_4g127140 37.778 180 92 4 5 171 8 180 4.09e-30 108
MS.gene064389.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 6.63e-29 102
MS.gene064389.t1 MTR_3g067915 68.657 67 21 0 60 126 30 96 9.40e-27 97.4
MS.gene064389.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 3.22e-26 98.6
MS.gene064389.t1 MTR_8g079502 60.563 71 28 0 9 79 2 72 6.87e-26 97.8
MS.gene064389.t1 MTR_1g054265 45.946 111 57 2 9 118 2 110 1.06e-25 97.1
MS.gene064389.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 2.72e-25 96.3
MS.gene064389.t1 MTR_4g131030 41.379 116 53 3 9 109 2 117 4.74e-25 96.7
MS.gene064389.t1 MTR_8g046350 40.152 132 67 3 9 135 2 126 1.74e-24 93.6
MS.gene064389.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.98e-24 93.2
MS.gene064389.t1 MTR_8g051580 59.420 69 28 0 9 77 2 70 3.71e-24 93.2
MS.gene064389.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 8.54e-22 86.7
MS.gene064389.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 5.09e-20 82.4
MS.gene064389.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 1.82e-19 82.0
MS.gene064389.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 4.70e-19 81.3
MS.gene064389.t1 MTR_1g053070 44.554 101 55 1 9 108 2 102 6.13e-19 81.3
MS.gene064389.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 7.66e-19 80.1
MS.gene064389.t1 MTR_3g452380 33.333 168 89 5 3 150 11 175 8.16e-19 80.9
MS.gene064389.t1 MTR_8g022970 34.356 163 92 4 8 163 17 171 4.15e-18 77.8
MS.gene064389.t1 MTR_5g066180 32.075 159 82 4 9 163 2 138 1.08e-17 77.4
MS.gene064389.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 1.48e-17 77.4
MS.gene064389.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 2.85e-17 76.6
MS.gene064389.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 3.36e-17 76.6
MS.gene064389.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 3.42e-17 76.3
MS.gene064389.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 3.47e-17 75.9
MS.gene064389.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 3.71e-17 75.1
MS.gene064389.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 4.37e-17 75.9
MS.gene064389.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 6.35e-17 75.5
MS.gene064389.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 7.06e-17 76.6
MS.gene064389.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 9.00e-17 75.5
MS.gene064389.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 1.41e-16 75.1
MS.gene064389.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.97e-16 73.9
MS.gene064389.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 2.20e-16 74.7
MS.gene064389.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 2.34e-16 73.9
MS.gene064389.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 7.05e-16 73.2
MS.gene064389.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 7.75e-16 72.4
MS.gene064389.t1 MTR_3g437790 33.813 139 83 4 26 159 30 164 9.09e-16 71.6
MS.gene064389.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 9.25e-16 72.4
MS.gene064389.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 9.48e-16 72.4
MS.gene064389.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.09e-15 72.0
MS.gene064389.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.10e-15 72.4
MS.gene064389.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.12e-15 72.4
MS.gene064389.t1 MTR_4g084740 48.684 76 37 2 9 83 2 76 1.26e-15 73.2
MS.gene064389.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.81e-15 67.4
MS.gene064389.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 1.89e-15 71.2
MS.gene064389.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 2.50e-15 71.2
MS.gene064389.t1 MTR_3g109930 32.639 144 81 3 27 163 20 154 3.04e-15 69.7
MS.gene064389.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 4.03e-15 68.2
MS.gene064389.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 5.77e-15 70.5
MS.gene064389.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.06e-14 68.6
MS.gene064389.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 1.62e-14 68.2
MS.gene064389.t1 MTR_5g066960 47.458 59 31 0 9 67 2 60 1.86e-14 64.7
MS.gene064389.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 1.88e-14 68.9
MS.gene064389.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 4.67e-14 68.2
MS.gene064389.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.08e-14 67.8
MS.gene064389.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 6.51e-14 67.4
MS.gene064389.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.75e-14 67.4
MS.gene064389.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 8.76e-14 67.4
MS.gene064389.t1 MTR_4g108720 35.537 121 71 6 9 125 2 119 2.46e-12 63.9
MS.gene064389.t1 MTR_4g051538 43.210 81 46 0 1 81 1 81 2.61e-12 63.2
MS.gene064389.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 3.60e-12 61.2
MS.gene064389.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.22e-11 60.5
MS.gene064389.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.29e-11 60.5
MS.gene064389.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.32e-11 60.8
MS.gene064389.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.39e-11 60.5
MS.gene064389.t1 MTR_2g045020 31.288 163 84 7 7 159 21 165 1.47e-11 60.5
MS.gene064389.t1 MTR_1g041615 58.696 46 19 0 20 65 17 62 5.24e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064389.t1 AT5G60440 58.929 168 66 2 5 169 3 170 2.24e-63 197
MS.gene064389.t1 AT2G24840 49.080 163 72 4 6 162 60 217 1.28e-45 150
MS.gene064389.t1 AT1G01530 46.154 169 84 3 4 169 2 166 4.83e-42 141
MS.gene064389.t1 AT1G65360 41.916 167 94 2 5 170 3 167 1.44e-39 134
MS.gene064389.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.50e-39 134
MS.gene064389.t1 AT2G34440 45.299 117 55 2 9 121 2 113 3.57e-28 103
MS.gene064389.t1 AT3G66656 42.520 127 69 1 9 131 2 128 2.46e-27 101
MS.gene064389.t1 AT3G04100 31.481 162 107 2 2 159 7 168 1.68e-26 100
MS.gene064389.t1 AT1G72350 33.553 152 68 3 9 160 43 161 2.84e-22 89.4
MS.gene064389.t1 AT1G28460 28.571 161 111 2 5 163 4 162 1.30e-20 84.3
MS.gene064389.t1 AT4G22950 41.818 110 61 1 10 119 3 109 1.32e-20 84.0
MS.gene064389.t1 AT4G22950 41.818 110 61 1 10 119 3 109 7.46e-20 83.2
MS.gene064389.t1 AT4G22950 41.818 110 61 1 10 119 3 109 7.46e-20 83.2
MS.gene064389.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.20e-19 80.9
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 2 87 1.48e-19 82.4
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 2 87 1.49e-19 82.0
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 3 88 1.55e-19 82.4
MS.gene064389.t1 AT1G29962 29.341 167 102 4 5 165 4 160 2.42e-19 80.9
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 12 97 2.49e-19 82.0
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 28 113 3.12e-19 82.0
MS.gene064389.t1 AT2G45660 52.941 68 32 0 10 77 3 70 4.91e-19 80.9
MS.gene064389.t1 AT2G45650 52.941 68 32 0 9 76 2 69 6.20e-19 81.3
MS.gene064389.t1 AT4G09960 46.512 86 45 1 9 93 97 182 7.01e-19 82.4
MS.gene064389.t1 AT4G18960 44.681 94 51 1 2 94 11 104 6.60e-18 78.6
MS.gene064389.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.09e-17 76.3
MS.gene064389.t1 AT3G61120 51.471 68 33 0 9 76 2 69 1.49e-17 77.4
MS.gene064389.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.50e-17 76.6
MS.gene064389.t1 AT2G22540 39.130 138 64 5 9 132 2 133 1.52e-17 77.4
MS.gene064389.t1 AT2G22540 39.130 138 64 5 9 132 2 133 1.52e-17 77.4
MS.gene064389.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.69e-17 75.1
MS.gene064389.t1 AT4G24540 34.211 152 75 3 9 156 2 132 1.87e-17 76.6
MS.gene064389.t1 AT2G42830 51.471 68 33 0 9 76 17 84 1.89e-17 77.4
MS.gene064389.t1 AT2G42830 51.471 68 33 0 9 76 17 84 1.89e-17 77.0
MS.gene064389.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.54e-17 76.3
MS.gene064389.t1 AT5G51870 50.000 72 36 0 5 76 21 92 2.75e-17 75.9
MS.gene064389.t1 AT3G58780 50.704 71 35 0 6 76 14 84 2.85e-17 76.6
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 3.12e-17 74.7
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 3.12e-17 74.7
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 3.12e-17 74.7
MS.gene064389.t1 AT5G51870 53.731 67 31 0 10 76 13 79 3.43e-17 76.3
MS.gene064389.t1 AT3G58780 50.704 71 35 0 6 76 20 90 3.52e-17 76.6
MS.gene064389.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.09e-17 75.1
MS.gene064389.t1 AT4G11880 50.000 72 35 1 10 80 3 74 4.09e-17 75.1
MS.gene064389.t1 AT5G13790 43.011 93 44 1 9 101 2 85 4.35e-17 76.6
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.65e-17 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.65e-17 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.65e-17 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.65e-17 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 4.65e-17 74.3
MS.gene064389.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.73e-17 72.8
MS.gene064389.t1 AT3G58780 50.704 71 35 0 6 76 14 84 5.38e-17 76.6
MS.gene064389.t1 AT4G37940 48.529 68 35 0 9 76 2 69 7.45e-17 75.5
MS.gene064389.t1 AT4G37940 48.529 68 35 0 9 76 2 69 7.83e-17 75.1
MS.gene064389.t1 AT3G57390 50.000 68 34 0 9 76 2 69 8.05e-17 75.1
MS.gene064389.t1 AT3G57230 47.059 68 36 0 9 76 2 69 8.51e-17 75.5
MS.gene064389.t1 AT3G57230 47.059 68 36 0 9 76 2 69 8.51e-17 75.5
MS.gene064389.t1 AT4G11880 50.000 72 35 1 10 80 3 74 9.18e-17 75.1
MS.gene064389.t1 AT4G11880 50.000 72 35 1 10 80 3 74 9.18e-17 75.1
MS.gene064389.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.87e-17 73.6
MS.gene064389.t1 AT1G28450 27.381 168 116 3 5 166 4 171 1.02e-16 73.9
MS.gene064389.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.09e-16 75.5
MS.gene064389.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.22e-16 73.6
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.35e-16 73.9
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.35e-16 73.9
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.35e-16 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.35e-16 74.3
MS.gene064389.t1 AT5G62165 38.235 102 51 2 10 111 3 92 1.35e-16 74.3
MS.gene064389.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.51e-16 75.9
MS.gene064389.t1 AT1G17310 36.310 168 66 5 8 170 47 178 1.61e-16 74.3
MS.gene064389.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.62e-16 73.9
MS.gene064389.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.77e-16 73.2
MS.gene064389.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.78e-16 74.7
MS.gene064389.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.79e-16 73.6
MS.gene064389.t1 AT1G17310 36.310 168 66 5 8 170 58 189 1.96e-16 74.3
MS.gene064389.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.96e-16 73.9
MS.gene064389.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.14e-16 73.6
MS.gene064389.t1 AT1G77980 49.296 71 35 1 9 78 2 72 2.95e-16 75.1
MS.gene064389.t1 AT1G77950 46.053 76 39 2 9 83 2 76 3.23e-16 73.9
MS.gene064389.t1 AT1G77950 46.053 76 39 2 9 83 2 76 3.23e-16 73.9
MS.gene064389.t1 AT1G77950 46.053 76 39 2 9 83 2 76 3.23e-16 73.9
MS.gene064389.t1 AT1G77950 46.053 76 39 2 9 83 2 76 3.23e-16 73.9
MS.gene064389.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.12e-16 73.6
MS.gene064389.t1 AT5G60910 49.296 71 33 1 9 79 2 69 5.34e-16 73.2
MS.gene064389.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.44e-16 72.8
MS.gene064389.t1 AT2G22630 47.059 68 36 0 9 76 2 69 5.44e-16 72.8
MS.gene064389.t1 AT3G54340 47.143 70 35 1 9 76 2 71 6.17e-16 72.8
MS.gene064389.t1 AT3G30260 46.377 69 36 1 9 76 2 70 7.00e-16 73.2
MS.gene064389.t1 AT1G69120 40.659 91 51 1 9 99 2 89 8.84e-16 72.8
MS.gene064389.t1 AT1G26310 47.826 69 35 1 9 76 2 70 9.87e-16 72.8
MS.gene064389.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.52e-15 70.1
MS.gene064389.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.09e-15 71.6
MS.gene064389.t1 AT5G20240 47.143 70 35 1 9 76 2 71 2.20e-15 70.9
MS.gene064389.t1 AT2G14210 46.377 69 36 1 9 76 2 70 2.59e-15 71.2
MS.gene064389.t1 AT2G14210 46.377 69 36 1 9 76 2 70 3.46e-15 70.9
MS.gene064389.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.77e-15 71.2
MS.gene064389.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.75e-15 69.3
MS.gene064389.t1 AT2G22540 57.143 56 24 0 9 64 2 57 6.23e-15 70.1
MS.gene064389.t1 AT3G02310 47.826 69 35 1 9 76 2 70 9.08e-15 69.3
MS.gene064389.t1 AT2G03710 47.143 70 35 2 9 76 2 71 9.30e-15 68.9
MS.gene064389.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.20e-14 70.1
MS.gene064389.t1 AT5G23260 44.681 94 44 3 5 90 12 105 1.28e-14 69.7
MS.gene064389.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.39e-14 68.6
MS.gene064389.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.44e-14 69.3
MS.gene064389.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.57e-14 68.6
MS.gene064389.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.71e-14 68.2
MS.gene064389.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.81e-14 68.2
MS.gene064389.t1 AT3G58780 52.459 61 29 0 6 66 14 74 1.83e-14 69.7
MS.gene064389.t1 AT5G23260 44.318 88 43 2 9 90 2 89 1.88e-14 68.9
MS.gene064389.t1 AT5G23260 44.318 88 43 2 9 90 2 89 1.96e-14 69.3
MS.gene064389.t1 AT1G47760 34.483 116 61 3 9 123 2 103 2.23e-14 67.8
MS.gene064389.t1 AT5G65060 46.377 69 36 1 9 76 2 70 2.92e-14 67.4
MS.gene064389.t1 AT5G65060 46.377 69 36 1 9 76 2 70 3.46e-14 67.4
MS.gene064389.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.84e-14 68.2
MS.gene064389.t1 AT2G03710 47.143 70 35 2 9 76 2 71 4.97e-14 68.2
MS.gene064389.t1 AT2G03710 47.143 70 35 2 9 76 2 71 5.50e-14 68.2
MS.gene064389.t1 AT1G24260 53.571 56 26 0 9 64 2 57 6.00e-14 67.8
MS.gene064389.t1 AT1G24260 53.571 56 26 0 9 64 2 57 6.11e-14 67.8
MS.gene064389.t1 AT1G24260 53.571 56 26 0 9 64 2 57 6.48e-14 67.4
MS.gene064389.t1 AT1G71692 44.928 69 37 1 10 77 3 71 8.41e-14 67.0
MS.gene064389.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.10e-13 65.1
MS.gene064389.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.72e-13 65.1
MS.gene064389.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.80e-13 64.7
MS.gene064389.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.84e-13 64.3
MS.gene064389.t1 AT4G37435 40.278 72 42 1 9 79 2 73 2.74e-12 62.4
MS.gene064389.t1 AT5G65070 47.368 57 30 0 9 65 2 58 3.20e-12 62.8
MS.gene064389.t1 AT1G69540 33.846 130 79 5 9 134 2 128 3.50e-12 63.5
MS.gene064389.t1 AT1G69540 33.846 130 79 5 9 134 2 128 3.68e-12 63.5
MS.gene064389.t1 AT1G18750 38.667 75 44 1 9 81 2 76 6.68e-12 63.2
MS.gene064389.t1 AT1G18750 38.667 75 44 1 9 81 2 76 6.86e-12 63.2
MS.gene064389.t1 AT1G18750 38.667 75 44 1 9 81 2 76 7.61e-12 62.8
MS.gene064389.t1 AT1G46408 33.613 119 70 3 10 119 5 123 8.60e-12 62.0
MS.gene064389.t1 AT5G65080 42.029 69 39 1 9 76 9 77 1.06e-11 60.8
MS.gene064389.t1 AT2G03060 28.070 171 106 7 9 164 2 170 1.77e-11 61.6
MS.gene064389.t1 AT2G03060 28.070 171 106 7 9 164 2 170 2.21e-11 61.6
MS.gene064389.t1 AT2G03060 28.070 171 106 7 9 164 2 170 2.21e-11 61.6
MS.gene064389.t1 AT2G03060 28.070 171 106 7 9 164 2 170 2.21e-11 61.6
MS.gene064389.t1 AT2G26320 40.000 70 40 1 9 76 18 87 2.22e-11 58.2
MS.gene064389.t1 AT5G65080 48.148 54 28 0 9 62 9 62 3.08e-11 59.7
MS.gene064389.t1 AT5G49420 36.782 87 49 2 5 85 3 89 3.16e-11 60.8
MS.gene064389.t1 AT5G49490 38.462 78 44 1 5 78 41 118 3.76e-11 60.5
MS.gene064389.t1 AT5G27130 41.558 77 41 2 10 82 14 90 5.94e-11 60.1

Find 43 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGATAGGCTTGTAATCT+AGG 0.307665 3.1:+39997903 MS.gene064389:CDS
TGGTGGGCTGGTCCCATTGA+TGG 0.319959 3.1:+39997811 MS.gene064389:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 3.1:-39997654 None:intergenic
TTGTTGATCATCATGTTGAT+AGG 0.343214 3.1:+39997890 MS.gene064389:CDS
AGACGGCCGAGACTCAATTT+TGG 0.343533 3.1:+39997791 MS.gene064389:CDS
GTCCCATTGATGGGATGAAT+CGG 0.407918 3.1:+39997821 MS.gene064389:CDS
GGTGGGCTGGTCCCATTGAT+GGG 0.419749 3.1:+39997812 MS.gene064389:CDS
TCTTCTCGATGTCCAGTAGC+TGG 0.437748 3.1:-39997738 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.442152 3.1:-39997607 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 3.1:-39997845 None:intergenic
TGAATTATTCAAGAAGGCTC+TGG 0.442548 3.1:+39997852 MS.gene064389:CDS
GGCCCGATTCATCCCATCAA+TGG 0.457427 3.1:-39997824 None:intergenic
TCTCGGCCGTCTTGCGCAAG+TGG 0.485406 3.1:-39997780 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 3.1:-39997608 None:intergenic
GCCCGATTCATCCCATCAAT+GGG 0.506203 3.1:-39997823 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 3.1:+39997726 MS.gene064389:CDS
GTAGCTGGTTGATCTGAGTC+AGG 0.512943 3.1:-39997723 None:intergenic
TCCCATTGATGGGATGAATC+GGG 0.513278 3.1:+39997822 MS.gene064389:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.516494 3.1:-39997846 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 3.1:-39997524 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 3.1:-39997690 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.535705 3.1:+39997846 MS.gene064389:CDS
TGGCCACCCCAATGTTGATA+CGG 0.542985 3.1:+39997600 MS.gene064389:CDS
AACGAAAATACCTTCTCTCC+AGG 0.551818 3.1:-39997577 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 3.1:+39997488 MS.gene064389:CDS
GTTGATAGGCTTGTAATCTA+GGG 0.555907 3.1:+39997904 MS.gene064389:CDS
TCATAGATCGTTATCTATCT+CGG 0.561253 3.1:+39997623 MS.gene064389:CDS
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 3.1:+39997487 MS.gene064389:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.573538 3.1:-39997698 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.574024 3.1:-39997797 None:intergenic
GCTGAGCCACTTGCGCAAGA+CGG 0.576977 3.1:+39997774 MS.gene064389:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 3.1:+39997526 MS.gene064389:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 3.1:-39997539 None:intergenic
CTTCAACCATGTCAAGTGGA+AGG 0.599332 3.1:+39997401 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.603608 3.1:+39997397 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 3.1:-39997501 None:intergenic
CGGATCCCACCCCAAAACAA+TGG 0.631700 3.1:+39997643 MS.gene064389:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 3.1:+39997663 MS.gene064389:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 3.1:-39997668 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 3.1:-39997603 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 3.1:+39997412 MS.gene064389:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 3.1:-39997606 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 3.1:-39997540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG - chr3.1:39997441-39997460 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG - chr3.1:39997848-39997867 None:intergenic 25.0%
CCAACTTGAATTATTCAAGA+AGG + chr3.1:39997846-39997865 MS.gene064389:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr3.1:39997849-39997868 None:intergenic 30.0%
TCATAGATCGTTATCTATCT+CGG + chr3.1:39997623-39997642 MS.gene064389:CDS 30.0%
TTGTTGATCATCATGTTGAT+AGG + chr3.1:39997890-39997909 MS.gene064389:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG - chr3.1:39997611-39997630 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG - chr3.1:39997610-39997629 None:intergenic 35.0%
TGAATTATTCAAGAAGGCTC+TGG + chr3.1:39997852-39997871 MS.gene064389:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG - chr3.1:39997657-39997676 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG - chr3.1:39997656-39997675 None:intergenic 35.0%
AACGAAAATACCTTCTCTCC+AGG - chr3.1:39997580-39997599 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG - chr3.1:39997609-39997628 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG + chr3.1:39997663-39997682 MS.gene064389:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG - chr3.1:39997655-39997674 None:intergenic 40.0%
!!! GGAGAGAAGGTATTTTCGTT+TGG + chr3.1:39997580-39997599 MS.gene064389:CDS 40.0%
AGCCCACCAAAATTGAGTCT+CGG - chr3.1:39997800-39997819 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr3.1:39997504-39997523 None:intergenic 45.0%
GTCCCATTGATGGGATGAAT+CGG + chr3.1:39997821-39997840 MS.gene064389:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG - chr3.1:39997671-39997690 None:intergenic 45.0%
TCCCATTGATGGGATGAATC+GGG + chr3.1:39997822-39997841 MS.gene064389:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG - chr3.1:39997432-39997451 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG + chr3.1:39997567-39997586 MS.gene064389:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG - chr3.1:39997652-39997671 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG - chr3.1:39997651-39997670 None:intergenic 45.0%
AGCAACATCTGCACCACAGA+GGG - chr3.1:39997542-39997561 None:intergenic 50.0%
GACTCAGATCAACCAGCTAC+TGG + chr3.1:39997726-39997745 MS.gene064389:CDS 50.0%
GCCCGATTCATCCCATCAAT+GGG - chr3.1:39997826-39997845 None:intergenic 50.0%
GTAGCTGGTTGATCTGAGTC+AGG - chr3.1:39997726-39997745 None:intergenic 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG + chr3.1:39997412-39997431 MS.gene064389:CDS 50.0%
TCTTCTCGATGTCCAGTAGC+TGG - chr3.1:39997741-39997760 None:intergenic 50.0%
TGACCGTATCAACATTGGGG+TGG - chr3.1:39997606-39997625 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG + chr3.1:39997600-39997619 MS.gene064389:CDS 50.0%
! AGACGGCCGAGACTCAATTT+TGG + chr3.1:39997791-39997810 MS.gene064389:CDS 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG + chr3.1:39997799-39997818 MS.gene064389:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG + chr3.1:39997559-39997578 MS.gene064389:CDS 50.0%
!! GGCCGAGACTCAATTTTGGT+GGG + chr3.1:39997795-39997814 MS.gene064389:CDS 50.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr3.1:39997526-39997545 MS.gene064389:CDS 55.0%
CGGATCCCACCCCAAAACAA+TGG + chr3.1:39997643-39997662 MS.gene064389:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr3.1:39997543-39997562 None:intergenic 55.0%
GGCCCGATTCATCCCATCAA+TGG - chr3.1:39997827-39997846 None:intergenic 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr3.1:39997527-39997546 None:intergenic 55.0%
! AGTATTGAGCTCGCGCACGT+TGG - chr3.1:39997701-39997720 None:intergenic 55.0%
! CGGCCGAGACTCAATTTTGG+TGG + chr3.1:39997794-39997813 MS.gene064389:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr3.1:39997487-39997506 MS.gene064389:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr3.1:39997488-39997507 MS.gene064389:CDS 55.0%
GCTGAGCCACTTGCGCAAGA+CGG + chr3.1:39997774-39997793 MS.gene064389:CDS 60.0%
!! GGTGGGCTGGTCCCATTGAT+GGG + chr3.1:39997812-39997831 MS.gene064389:CDS 60.0%
!! TGGTGGGCTGGTCCCATTGA+TGG + chr3.1:39997811-39997830 MS.gene064389:CDS 60.0%
TCTCGGCCGTCTTGCGCAAG+TGG - chr3.1:39997783-39997802 None:intergenic 65.0%
GCTCGCGCACGTTGGCGCTA+CGG - chr3.1:39997693-39997712 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 39997409 39997924 39997409 ID=MS.gene064389
chr3.1 mRNA 39997409 39997924 39997409 ID=MS.gene064389.t1;Parent=MS.gene064389
chr3.1 exon 39997409 39997924 39997409 ID=MS.gene064389.t1.exon1;Parent=MS.gene064389.t1
chr3.1 CDS 39997409 39997924 39997409 ID=cds.MS.gene064389.t1;Parent=MS.gene064389.t1
Gene Sequence

>MS.gene064389

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTATCTCGGATCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCACCTGACTCAGATCAACCAGCTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCCACTTGCGCAAGACGGCCGAGACTCAATTTTGGTGGGCTGGTCCCATTGATGGGATGAATCGGGCCCAACTTGAATTATTCAAGAAGGCTCTGGATGAGCTTAAGAAAATTGTTGATCATCATGTTGATAGGCTTGTAATCTAG
Protein sequence

>MS.gene064389.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRIPPQNNGTMQFIEAHRSANVRELNTHLTQINQLLDIEKKRAEELSHLRKTAETQFWWAGPIDGMNRAQLELFKKALDELKKIVDHHVDRLVI