Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064539.t1 | XP_003626313.1 | 96.4 | 274 | 9 | 1 | 1 | 273 | 1 | 274 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064539.t1 | Q86JM5 | 33.9 | 245 | 156 | 4 | 20 | 261 | 37 | 278 | 4.5e-24 | 113.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064539.t1 | Q2HTN1 | 96.4 | 274 | 9 | 1 | 1 | 273 | 1 | 274 | 8.7e-146 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051810 | MS.gene064539 | 0.811822 | 5.78E-51 | -1.69E-46 |
| MS.gene054374 | MS.gene064539 | 0.806671 | 7.35E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064539.t1 | MTR_7g113780 | 96.350 | 274 | 9 | 1 | 1 | 273 | 1 | 274 | 0.0 | 525 |
| MS.gene064539.t1 | MTR_8g078200 | 33.929 | 280 | 168 | 3 | 9 | 273 | 16 | 293 | 4.31e-42 | 146 |
| MS.gene064539.t1 | MTR_3g111610 | 33.216 | 283 | 164 | 5 | 9 | 273 | 15 | 290 | 7.74e-41 | 143 |
| MS.gene064539.t1 | MTR_5g019330 | 33.333 | 288 | 157 | 7 | 7 | 272 | 9 | 283 | 1.15e-37 | 135 |
| MS.gene064539.t1 | MTR_1g021915 | 32.000 | 200 | 119 | 4 | 9 | 193 | 9 | 206 | 6.02e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064539.t1 | AT3G06470 | 57.664 | 274 | 103 | 5 | 9 | 272 | 8 | 278 | 4.32e-101 | 296 |
| MS.gene064539.t1 | AT3G06460 | 52.107 | 261 | 116 | 5 | 9 | 262 | 8 | 266 | 1.08e-85 | 258 |
| MS.gene064539.t1 | AT1G75000 | 30.717 | 293 | 153 | 6 | 10 | 269 | 5 | 280 | 7.29e-37 | 132 |
| MS.gene064539.t1 | AT4G36830 | 28.472 | 288 | 176 | 8 | 9 | 273 | 9 | 289 | 2.23e-30 | 115 |
| MS.gene064539.t1 | AT4G36830 | 29.572 | 257 | 153 | 7 | 9 | 244 | 9 | 258 | 4.44e-25 | 101 |
Find 97 sgRNAs with CRISPR-Local
Find 105 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCGGTGGTGGTGGATGCTC+TGG | 0.244745 | 3.1:+40795070 | MS.gene064539:CDS |
| CTCCATCCTCTCCCTCATTA+TGG | 0.310997 | 3.1:+40794616 | MS.gene064539:CDS |
| GAGAGTGAGGGAGAGATAAA+AGG | 0.313559 | 3.1:-40794519 | None:intergenic |
| CATGTGAAATTTAGAATGTT+TGG | 0.317423 | 3.1:-40794443 | None:intergenic |
| CTCTCCCTCATTATGGCTAT+TGG | 0.337974 | 3.1:+40794623 | MS.gene064539:CDS |
| GGATAGGTGGGAGAGGGAAG+AGG | 0.353829 | 3.1:-40794547 | None:intergenic |
| TCCCAATCATGTGTTATCTA+TGG | 0.356723 | 3.1:+40794852 | MS.gene064539:CDS |
| GGATGGAGAGGATGAGGTTG+TGG | 0.388690 | 3.1:-40794601 | None:intergenic |
| GTGGGAGAGGGAAGAGGAGA+AGG | 0.389465 | 3.1:-40794541 | None:intergenic |
| GGAGGTTAGGAGTGTGGGTT+AGG | 0.392757 | 3.1:-40794661 | None:intergenic |
| GAGTTGGTAAGAAGTGCAAT+AGG | 0.397860 | 3.1:-40794899 | None:intergenic |
| TGGTGGATGCTCTGGGATGA+AGG | 0.407237 | 3.1:+40795078 | MS.gene064539:CDS |
| CAGATGGTGGAGCGGAGGTT+AGG | 0.414087 | 3.1:-40794674 | None:intergenic |
| CTTTATTATCACTTCGGATC+CGG | 0.421923 | 3.1:+40795052 | MS.gene064539:CDS |
| GTTAGGAGTGTGGGTTAGGA+TGG | 0.422091 | 3.1:-40794657 | None:intergenic |
| GAGGAATGAGAGACGTTTGA+TGG | 0.423143 | 3.1:-40794807 | None:intergenic |
| GAGGTTGTGGAGTGCGGTGA+AGG | 0.426675 | 3.1:-40794588 | None:intergenic |
| GGAAGTGAGGTGGGATAGGT+GGG | 0.431318 | 3.1:-40794559 | None:intergenic |
| GATGCTCTGGGATGAAGGCT+TGG | 0.437263 | 3.1:+40795083 | MS.gene064539:CDS |
| AGCCATAGATAACACATGAT+TGG | 0.439169 | 3.1:-40794854 | None:intergenic |
| AGGAAGTGAGGTGGGATAGG+TGG | 0.440874 | 3.1:-40794560 | None:intergenic |
| GGAAGAGGAGAAGGAGAGTG+AGG | 0.444740 | 3.1:-40794532 | None:intergenic |
| CACTTCGGATCCGGTGGTGG+TGG | 0.447681 | 3.1:+40795061 | MS.gene064539:CDS |
| TTGGCAGAATCCTTCAACAT+TGG | 0.449261 | 3.1:+40794408 | MS.gene064539:CDS |
| TTGAGGAAGTGAGGTGGGAT+AGG | 0.449819 | 3.1:-40794563 | None:intergenic |
| GGGAGAGGATGGAGAGGATG+AGG | 0.450488 | 3.1:-40794607 | None:intergenic |
| GTGTTCAGCTTTGCCGTCTC+CGG | 0.450503 | 3.1:+40795022 | MS.gene064539:CDS |
| GGACCATTTGGAGGGGTATG+AGG | 0.451616 | 3.1:-40794704 | None:intergenic |
| GCCATAGATAACACATGATT+GGG | 0.452793 | 3.1:-40794853 | None:intergenic |
| TGGAAAGAGAGAGGAACAAA+AGG | 0.460332 | 3.1:-40794493 | None:intergenic |
| CCGGTGGTGGTGGATGCTCT+GGG | 0.474001 | 3.1:+40795071 | MS.gene064539:CDS |
| CCATTTGGAGGGGTATGAGG+AGG | 0.474427 | 3.1:-40794701 | None:intergenic |
| TGAACACGAACTGAACAATC+TGG | 0.475700 | 3.1:-40795006 | None:intergenic |
| TACTACTTCCTCACCACTGT+TGG | 0.476064 | 3.1:+40794947 | MS.gene064539:CDS |
| TGGAGCGGAGGTTAGGAGTG+TGG | 0.479715 | 3.1:-40794667 | None:intergenic |
| GTGGGTTAGGATGGTGAGGG+AGG | 0.481729 | 3.1:-40794648 | None:intergenic |
| GGAGCGGAGGTTAGGAGTGT+GGG | 0.485741 | 3.1:-40794666 | None:intergenic |
| AGTTGGTAAGAAGTGCAATA+GGG | 0.487218 | 3.1:-40794898 | None:intergenic |
| TATCACTTCGGATCCGGTGG+TGG | 0.497768 | 3.1:+40795058 | MS.gene064539:CDS |
| CTTATGCTTTATTATCACTT+CGG | 0.498009 | 3.1:+40795046 | MS.gene064539:CDS |
| AGGAACAAAAGGGATGAGGC+TGG | 0.499237 | 3.1:-40794482 | None:intergenic |
| GAGGTGGGATAGGTGGGAGA+GGG | 0.500599 | 3.1:-40794553 | None:intergenic |
| GATGAGGCTGGAGTGTGAGG+AGG | 0.502414 | 3.1:-40794470 | None:intergenic |
| TGAGGTGGGATAGGTGGGAG+AGG | 0.507625 | 3.1:-40794554 | None:intergenic |
| GAGGGAGAGATAAAAGGCTA+TGG | 0.508066 | 3.1:-40794513 | None:intergenic |
| GAAGAGGAGAAGGAGAGTGA+GGG | 0.511361 | 3.1:-40794531 | None:intergenic |
| AGCTGAATGGAAAACCTCAT+TGG | 0.512015 | 3.1:+40794389 | None:intergenic |
| CCTCCTCATACCCCTCCAAA+TGG | 0.515262 | 3.1:+40794701 | MS.gene064539:CDS |
| GAGGGAAGCAGATGGTGGAG+CGG | 0.519215 | 3.1:-40794682 | None:intergenic |
| CCCAGAGCATCCACCACCAC+CGG | 0.521985 | 3.1:-40795071 | None:intergenic |
| AGCCATAATGAGGGAGAGGA+TGG | 0.527649 | 3.1:-40794618 | None:intergenic |
| GAGTGTGGGTTAGGATGGTG+AGG | 0.530952 | 3.1:-40794652 | None:intergenic |
| TCGGTAACGACGCGTTTCCA+CGG | 0.536456 | 3.1:-40794980 | None:intergenic |
| GGTAAACTAGCCAATGTTGA+AGG | 0.541678 | 3.1:-40794418 | None:intergenic |
| AGGGTTTGAGGAAGTGAGGT+GGG | 0.545949 | 3.1:-40794568 | None:intergenic |
| ATGAGGCTGGAGTGTGAGGA+GGG | 0.554548 | 3.1:-40794469 | None:intergenic |
| GTGATAATAAAGCATAAGAC+CGG | 0.555355 | 3.1:-40795041 | None:intergenic |
| GGAGTGCGGTGAAGGGTTTG+AGG | 0.557377 | 3.1:-40794580 | None:intergenic |
| GGAAAGAGAGAGGAACAAAA+GGG | 0.565658 | 3.1:-40794492 | None:intergenic |
| GTTGAAGGATTCTGCCAATG+AGG | 0.566132 | 3.1:-40794403 | None:intergenic |
| CAATAGCCATAATGAGGGAG+AGG | 0.566959 | 3.1:-40794622 | None:intergenic |
| AGGGATGAGGCTGGAGTGTG+AGG | 0.567634 | 3.1:-40794473 | None:intergenic |
| AGGTGCCAATAGCCATAATG+AGG | 0.568133 | 3.1:-40794628 | None:intergenic |
| TGATTGGGACGGTGGAATGA+TGG | 0.571858 | 3.1:-40794838 | None:intergenic |
| GTGAAGGGTTTGAGGAAGTG+AGG | 0.573391 | 3.1:-40794572 | None:intergenic |
| ATAAAGCATAAGACCGGAGA+CGG | 0.574571 | 3.1:-40795035 | None:intergenic |
| AGGTTGTGGAGTGCGGTGAA+GGG | 0.575003 | 3.1:-40794587 | None:intergenic |
| GACGTTTGATGGATCTAGAG+AGG | 0.577148 | 3.1:-40794796 | None:intergenic |
| CAAACATTCTAAATTTCACA+TGG | 0.578086 | 3.1:+40794444 | MS.gene064539:CDS |
| TGAAATTTAGAATGTTTGGA+TGG | 0.579054 | 3.1:-40794439 | None:intergenic |
| AAGGGTTTGAGGAAGTGAGG+TGG | 0.580580 | 3.1:-40794569 | None:intergenic |
| TATTATCACTTCGGATCCGG+TGG | 0.582897 | 3.1:+40795055 | MS.gene064539:CDS |
| GGTATGAGGAGGGAAGCAGA+TGG | 0.584509 | 3.1:-40794690 | None:intergenic |
| CGACGCGTTTCCACGGCGGT+CGG | 0.590079 | 3.1:-40794973 | None:intergenic |
| GGAAGCAGATGGTGGAGCGG+AGG | 0.590296 | 3.1:-40794679 | None:intergenic |
| GAGGATGAGGTTGTGGAGTG+CGG | 0.590535 | 3.1:-40794594 | None:intergenic |
| AAAAGAAGGGACCATTTGGA+GGG | 0.591110 | 3.1:-40794712 | None:intergenic |
| AGAGAGGAACAAAAGGGATG+AGG | 0.592520 | 3.1:-40794486 | None:intergenic |
| ATGAGGAGGGAAGCAGATGG+TGG | 0.597449 | 3.1:-40794687 | None:intergenic |
| CATTTGGAGGGGTATGAGGA+GGG | 0.598396 | 3.1:-40794700 | None:intergenic |
| ATAACACATGATTGGGACGG+TGG | 0.620196 | 3.1:-40794846 | None:intergenic |
| AAAAGGCTATGGAAAGAGAG+AGG | 0.627374 | 3.1:-40794502 | None:intergenic |
| GTCGGATTCCAACAGTGGTG+AGG | 0.628146 | 3.1:-40794955 | None:intergenic |
| CGGTGGAATGATGGTACACG+TGG | 0.631074 | 3.1:-40794829 | None:intergenic |
| AGTGTGGGTTAGGATGGTGA+GGG | 0.632987 | 3.1:-40794651 | None:intergenic |
| AAAGAAGGGACCATTTGGAG+GGG | 0.639807 | 3.1:-40794711 | None:intergenic |
| CGGCGGTCGGATTCCAACAG+TGG | 0.641832 | 3.1:-40794960 | None:intergenic |
| TAATGAGGGAGAGGATGGAG+AGG | 0.644404 | 3.1:-40794613 | None:intergenic |
| GATGACGTGGACGGATGAGT+TGG | 0.645959 | 3.1:-40794915 | None:intergenic |
| AGAGTACATGATGACGTGGA+CGG | 0.658163 | 3.1:-40794924 | None:intergenic |
| GAACTGAACAATCTGGCAGT+CGG | 0.662736 | 3.1:-40794999 | None:intergenic |
| TGGAATGATGGTACACGTGG+AGG | 0.666407 | 3.1:-40794826 | None:intergenic |
| TAGATAACACATGATTGGGA+CGG | 0.671340 | 3.1:-40794849 | None:intergenic |
| GGTGCCAATAGCCATAATGA+GGG | 0.679843 | 3.1:-40794627 | None:intergenic |
| AGTAAGAGTACATGATGACG+TGG | 0.708386 | 3.1:-40794928 | None:intergenic |
| CTGTTGGAATCCGACCGCCG+TGG | 0.731632 | 3.1:+40794963 | MS.gene064539:CDS |
| GTAACGACGCGTTTCCACGG+CGG | 0.765126 | 3.1:-40794977 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | CAAACATTCTAAATTTCACA+TGG | + | chr3.1:40794444-40794463 | MS.gene064539:CDS | 25.0% |
| !! | CATGTGAAATTTAGAATGTT+TGG | - | chr3.1:40794446-40794465 | None:intergenic | 25.0% |
| !! | CTTATGCTTTATTATCACTT+CGG | + | chr3.1:40795046-40795065 | MS.gene064539:CDS | 25.0% |
| !! | TGAAATTTAGAATGTTTGGA+TGG | - | chr3.1:40794442-40794461 | None:intergenic | 25.0% |
| !!! | TGAATTCAAGATATTTTGAG+AGG | - | chr3.1:40794757-40794776 | None:intergenic | 25.0% |
| !!! | TGTTTTTAATGCTTCTCTTT+TGG | + | chr3.1:40795117-40795136 | MS.gene064539:CDS | 25.0% |
| GTGATAATAAAGCATAAGAC+CGG | - | chr3.1:40795044-40795063 | None:intergenic | 30.0% | |
| !!! | AAATGGTCCCTTCTTTTTTT+GGG | + | chr3.1:40794718-40794737 | MS.gene064539:CDS | 30.0% |
| AGCCATAGATAACACATGAT+TGG | - | chr3.1:40794857-40794876 | None:intergenic | 35.0% | |
| ATGTAGGCCCAAAAAAAGAA+GGG | - | chr3.1:40794728-40794747 | None:intergenic | 35.0% | |
| CAAAAAAAGAAGGGACCATT+TGG | - | chr3.1:40794719-40794738 | None:intergenic | 35.0% | |
| CTTTATTATCACTTCGGATC+CGG | + | chr3.1:40795052-40795071 | MS.gene064539:CDS | 35.0% | |
| GCCATAGATAACACATGATT+GGG | - | chr3.1:40794856-40794875 | None:intergenic | 35.0% | |
| TAGATAACACATGATTGGGA+CGG | - | chr3.1:40794852-40794871 | None:intergenic | 35.0% | |
| TCCCAATCATGTGTTATCTA+TGG | + | chr3.1:40794852-40794871 | MS.gene064539:CDS | 35.0% | |
| !! | AGTTGGTAAGAAGTGCAATA+GGG | - | chr3.1:40794901-40794920 | None:intergenic | 35.0% |
| !! | TTTTGAGAGGTAGAAGATGT+AGG | - | chr3.1:40794744-40794763 | None:intergenic | 35.0% |
| !!! | CAAATGGTCCCTTCTTTTTT+TGG | + | chr3.1:40794717-40794736 | MS.gene064539:CDS | 35.0% |
| AAAAAGAAGGGACCATTTGG+AGG | - | chr3.1:40794716-40794735 | None:intergenic | 40.0% | |
| AAAAGAAGGGACCATTTGGA+GGG | - | chr3.1:40794715-40794734 | None:intergenic | 40.0% | |
| AAAAGGCTATGGAAAGAGAG+AGG | - | chr3.1:40794505-40794524 | None:intergenic | 40.0% | |
| ATAAAGCATAAGACCGGAGA+CGG | - | chr3.1:40795038-40795057 | None:intergenic | 40.0% | |
| GATGTAGGCCCAAAAAAAGA+AGG | - | chr3.1:40794729-40794748 | None:intergenic | 40.0% | |
| GGAAAGAGAGAGGAACAAAA+GGG | - | chr3.1:40794495-40794514 | None:intergenic | 40.0% | |
| GGTAAACTAGCCAATGTTGA+AGG | - | chr3.1:40794421-40794440 | None:intergenic | 40.0% | |
| TGAACACGAACTGAACAATC+TGG | - | chr3.1:40795009-40795028 | None:intergenic | 40.0% | |
| TGGAAAGAGAGAGGAACAAA+AGG | - | chr3.1:40794496-40794515 | None:intergenic | 40.0% | |
| TTGGCAGAATCCTTCAACAT+TGG | + | chr3.1:40794408-40794427 | MS.gene064539:CDS | 40.0% | |
| ! | AGTAAGAGTACATGATGACG+TGG | - | chr3.1:40794931-40794950 | None:intergenic | 40.0% |
| !! | GAGTTGGTAAGAAGTGCAAT+AGG | - | chr3.1:40794902-40794921 | None:intergenic | 40.0% |
| AAAGAAGGGACCATTTGGAG+GGG | - | chr3.1:40794714-40794733 | None:intergenic | 45.0% | |
| AGAGAGGAACAAAAGGGATG+AGG | - | chr3.1:40794489-40794508 | None:intergenic | 45.0% | |
| AGGTGCCAATAGCCATAATG+AGG | - | chr3.1:40794631-40794650 | None:intergenic | 45.0% | |
| ATAACACATGATTGGGACGG+TGG | - | chr3.1:40794849-40794868 | None:intergenic | 45.0% | |
| CAATAGCCATAATGAGGGAG+AGG | - | chr3.1:40794625-40794644 | None:intergenic | 45.0% | |
| CTCTCCCTCATTATGGCTAT+TGG | + | chr3.1:40794623-40794642 | MS.gene064539:CDS | 45.0% | |
| GAACTGAACAATCTGGCAGT+CGG | - | chr3.1:40795002-40795021 | None:intergenic | 45.0% | |
| GAGAGTGAGGGAGAGATAAA+AGG | - | chr3.1:40794522-40794541 | None:intergenic | 45.0% | |
| GAGGAATGAGAGACGTTTGA+TGG | - | chr3.1:40794810-40794829 | None:intergenic | 45.0% | |
| GAGGGAGAGATAAAAGGCTA+TGG | - | chr3.1:40794516-40794535 | None:intergenic | 45.0% | |
| GGTGCCAATAGCCATAATGA+GGG | - | chr3.1:40794630-40794649 | None:intergenic | 45.0% | |
| GTTGAAGGATTCTGCCAATG+AGG | - | chr3.1:40794406-40794425 | None:intergenic | 45.0% | |
| TACTACTTCCTCACCACTGT+TGG | + | chr3.1:40794947-40794966 | MS.gene064539:CDS | 45.0% | |
| TATTATCACTTCGGATCCGG+TGG | + | chr3.1:40795055-40795074 | MS.gene064539:CDS | 45.0% | |
| ! | AGAGTACATGATGACGTGGA+CGG | - | chr3.1:40794927-40794946 | None:intergenic | 45.0% |
| ! | GACGTTTGATGGATCTAGAG+AGG | - | chr3.1:40794799-40794818 | None:intergenic | 45.0% |
| AAGGGTTTGAGGAAGTGAGG+TGG | - | chr3.1:40794572-40794591 | None:intergenic | 50.0% | |
| AGCCATAATGAGGGAGAGGA+TGG | - | chr3.1:40794621-40794640 | None:intergenic | 50.0% | |
| AGGAACAAAAGGGATGAGGC+TGG | - | chr3.1:40794485-40794504 | None:intergenic | 50.0% | |
| AGGGTTTGAGGAAGTGAGGT+GGG | - | chr3.1:40794571-40794590 | None:intergenic | 50.0% | |
| CTCCATCCTCTCCCTCATTA+TGG | + | chr3.1:40794616-40794635 | MS.gene064539:CDS | 50.0% | |
| GAAGAGGAGAAGGAGAGTGA+GGG | - | chr3.1:40794534-40794553 | None:intergenic | 50.0% | |
| GTGAAGGGTTTGAGGAAGTG+AGG | - | chr3.1:40794575-40794594 | None:intergenic | 50.0% | |
| TAATGAGGGAGAGGATGGAG+AGG | - | chr3.1:40794616-40794635 | None:intergenic | 50.0% | |
| TGATTGGGACGGTGGAATGA+TGG | - | chr3.1:40794841-40794860 | None:intergenic | 50.0% | |
| TGGAATGATGGTACACGTGG+AGG | - | chr3.1:40794829-40794848 | None:intergenic | 50.0% | |
| TTGAGGAAGTGAGGTGGGAT+AGG | - | chr3.1:40794566-40794585 | None:intergenic | 50.0% | |
| ! | CATTTGGAGGGGTATGAGGA+GGG | - | chr3.1:40794703-40794722 | None:intergenic | 50.0% |
| !! | AGTGTGGGTTAGGATGGTGA+GGG | - | chr3.1:40794654-40794673 | None:intergenic | 50.0% |
| !! | GTTAGGAGTGTGGGTTAGGA+TGG | - | chr3.1:40794660-40794679 | None:intergenic | 50.0% |
| AGGAAGTGAGGTGGGATAGG+TGG | - | chr3.1:40794563-40794582 | None:intergenic | 55.0% | |
| AGGTTGTGGAGTGCGGTGAA+GGG | - | chr3.1:40794590-40794609 | None:intergenic | 55.0% | |
| ATGAGGAGGGAAGCAGATGG+TGG | - | chr3.1:40794690-40794709 | None:intergenic | 55.0% | |
| ATGAGGCTGGAGTGTGAGGA+GGG | - | chr3.1:40794472-40794491 | None:intergenic | 55.0% | |
| CCTCCTCATACCCCTCCAAA+TGG | + | chr3.1:40794701-40794720 | MS.gene064539:CDS | 55.0% | |
| CGGTGGAATGATGGTACACG+TGG | - | chr3.1:40794832-40794851 | None:intergenic | 55.0% | |
| GAGGATGAGGTTGTGGAGTG+CGG | - | chr3.1:40794597-40794616 | None:intergenic | 55.0% | |
| GATGACGTGGACGGATGAGT+TGG | - | chr3.1:40794918-40794937 | None:intergenic | 55.0% | |
| GGAAGAGGAGAAGGAGAGTG+AGG | - | chr3.1:40794535-40794554 | None:intergenic | 55.0% | |
| GGAAGTGAGGTGGGATAGGT+GGG | - | chr3.1:40794562-40794581 | None:intergenic | 55.0% | |
| GGATGGAGAGGATGAGGTTG+TGG | - | chr3.1:40794604-40794623 | None:intergenic | 55.0% | |
| GGTATGAGGAGGGAAGCAGA+TGG | - | chr3.1:40794693-40794712 | None:intergenic | 55.0% | |
| GTCGGATTCCAACAGTGGTG+AGG | - | chr3.1:40794958-40794977 | None:intergenic | 55.0% | |
| GTGTTCAGCTTTGCCGTCTC+CGG | + | chr3.1:40795022-40795041 | MS.gene064539:CDS | 55.0% | |
| TATCACTTCGGATCCGGTGG+TGG | + | chr3.1:40795058-40795077 | MS.gene064539:CDS | 55.0% | |
| TCGGTAACGACGCGTTTCCA+CGG | - | chr3.1:40794983-40795002 | None:intergenic | 55.0% | |
| ! | CCATTTGGAGGGGTATGAGG+AGG | - | chr3.1:40794704-40794723 | None:intergenic | 55.0% |
| ! | GGACCATTTGGAGGGGTATG+AGG | - | chr3.1:40794707-40794726 | None:intergenic | 55.0% |
| ! | GGAGGTTAGGAGTGTGGGTT+AGG | - | chr3.1:40794664-40794683 | None:intergenic | 55.0% |
| !! | GAGTGTGGGTTAGGATGGTG+AGG | - | chr3.1:40794655-40794674 | None:intergenic | 55.0% |
| !! | GATGCTCTGGGATGAAGGCT+TGG | + | chr3.1:40795083-40795102 | MS.gene064539:CDS | 55.0% |
| !! | TGGTGGATGCTCTGGGATGA+AGG | + | chr3.1:40795078-40795097 | MS.gene064539:CDS | 55.0% |
| AGGGATGAGGCTGGAGTGTG+AGG | - | chr3.1:40794476-40794495 | None:intergenic | 60.0% | |
| GAGGTGGGATAGGTGGGAGA+GGG | - | chr3.1:40794556-40794575 | None:intergenic | 60.0% | |
| GAGGTTGTGGAGTGCGGTGA+AGG | - | chr3.1:40794591-40794610 | None:intergenic | 60.0% | |
| GATGAGGCTGGAGTGTGAGG+AGG | - | chr3.1:40794473-40794492 | None:intergenic | 60.0% | |
| GGAGTGCGGTGAAGGGTTTG+AGG | - | chr3.1:40794583-40794602 | None:intergenic | 60.0% | |
| GGATAGGTGGGAGAGGGAAG+AGG | - | chr3.1:40794550-40794569 | None:intergenic | 60.0% | |
| GGGAGAGGATGGAGAGGATG+AGG | - | chr3.1:40794610-40794629 | None:intergenic | 60.0% | |
| GTAACGACGCGTTTCCACGG+CGG | - | chr3.1:40794980-40794999 | None:intergenic | 60.0% | |
| GTGGGAGAGGGAAGAGGAGA+AGG | - | chr3.1:40794544-40794563 | None:intergenic | 60.0% | |
| TGAGGTGGGATAGGTGGGAG+AGG | - | chr3.1:40794557-40794576 | None:intergenic | 60.0% | |
| TGGAGCGGAGGTTAGGAGTG+TGG | - | chr3.1:40794670-40794689 | None:intergenic | 60.0% | |
| ! | GGAGCGGAGGTTAGGAGTGT+GGG | - | chr3.1:40794669-40794688 | None:intergenic | 60.0% |
| !! | CAGATGGTGGAGCGGAGGTT+AGG | - | chr3.1:40794677-40794696 | None:intergenic | 60.0% |
| !! | GAGGGAAGCAGATGGTGGAG+CGG | - | chr3.1:40794685-40794704 | None:intergenic | 60.0% |
| !! | GTGGGTTAGGATGGTGAGGG+AGG | - | chr3.1:40794651-40794670 | None:intergenic | 60.0% |
| CGGCGGTCGGATTCCAACAG+TGG | - | chr3.1:40794963-40794982 | None:intergenic | 65.0% | |
| CTGTTGGAATCCGACCGCCG+TGG | + | chr3.1:40794963-40794982 | MS.gene064539:CDS | 65.0% | |
| ! | CACTTCGGATCCGGTGGTGG+TGG | + | chr3.1:40795061-40795080 | MS.gene064539:CDS | 65.0% |
| ! | CCCAGAGCATCCACCACCAC+CGG | - | chr3.1:40795074-40795093 | None:intergenic | 65.0% |
| !! | CCGGTGGTGGTGGATGCTCT+GGG | + | chr3.1:40795071-40795090 | MS.gene064539:CDS | 65.0% |
| !! | GGAAGCAGATGGTGGAGCGG+AGG | - | chr3.1:40794682-40794701 | None:intergenic | 65.0% |
| !! | TCCGGTGGTGGTGGATGCTC+TGG | + | chr3.1:40795070-40795089 | MS.gene064539:CDS | 65.0% |
| CGACGCGTTTCCACGGCGGT+CGG | - | chr3.1:40794976-40794995 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40794395 | 40795216 | 40794395 | ID=MS.gene064539 |
| chr3.1 | mRNA | 40794395 | 40795216 | 40794395 | ID=MS.gene064539.t1;Parent=MS.gene064539 |
| chr3.1 | exon | 40794395 | 40795216 | 40794395 | ID=MS.gene064539.t1.exon1;Parent=MS.gene064539.t1 |
| chr3.1 | CDS | 40794395 | 40795216 | 40794395 | ID=cds.MS.gene064539.t1;Parent=MS.gene064539.t1 |
| Gene Sequence |
| Protein sequence |
