Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064545.t1 | KEH33924.1 | 90.9 | 208 | 19 | 0 | 1 | 208 | 48 | 255 | 6.90E-101 | 376.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064545.t1 | Q41160 | 64.3 | 207 | 70 | 3 | 3 | 207 | 51 | 255 | 1.6e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064545.t1 | A0A072UVT9 | 90.9 | 208 | 19 | 0 | 1 | 208 | 48 | 255 | 5.0e-101 | 376.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056856 | MS.gene064545 | 0.820678 | 6.04E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064545.t1 | MTR_3g054170 | 90.865 | 208 | 19 | 0 | 1 | 208 | 48 | 255 | 4.06e-137 | 384 |
| MS.gene064545.t1 | MTR_3g054180 | 80.476 | 210 | 39 | 1 | 1 | 208 | 52 | 261 | 9.82e-119 | 338 |
| MS.gene064545.t1 | MTR_3g054200 | 78.846 | 208 | 44 | 0 | 1 | 208 | 48 | 255 | 3.04e-118 | 336 |
| MS.gene064545.t1 | MTR_1g090973 | 52.857 | 210 | 95 | 3 | 1 | 207 | 52 | 260 | 6.91e-76 | 229 |
| MS.gene064545.t1 | MTR_1g090943 | 56.190 | 210 | 87 | 3 | 1 | 207 | 53 | 260 | 5.08e-74 | 225 |
| MS.gene064545.t1 | MTR_0163s0020 | 59.140 | 186 | 76 | 0 | 22 | 207 | 75 | 260 | 1.75e-72 | 221 |
| MS.gene064545.t1 | MTR_0684s0020 | 59.140 | 186 | 76 | 0 | 22 | 207 | 74 | 259 | 1.99e-72 | 221 |
| MS.gene064545.t1 | MTR_3g047140 | 58.378 | 185 | 76 | 1 | 24 | 207 | 77 | 261 | 7.82e-69 | 212 |
| MS.gene064545.t1 | MTR_3g027280 | 53.738 | 214 | 87 | 5 | 1 | 206 | 56 | 265 | 2.06e-67 | 208 |
| MS.gene064545.t1 | MTR_1g090960 | 53.886 | 193 | 60 | 3 | 23 | 208 | 61 | 231 | 2.03e-62 | 194 |
| MS.gene064545.t1 | MTR_1g090937 | 49.057 | 212 | 91 | 6 | 1 | 204 | 54 | 256 | 6.84e-61 | 191 |
| MS.gene064545.t1 | MTR_1g090957 | 50.000 | 214 | 83 | 6 | 1 | 206 | 56 | 253 | 2.04e-59 | 187 |
| MS.gene064545.t1 | MTR_1g090930 | 50.926 | 216 | 87 | 7 | 1 | 206 | 56 | 262 | 9.67e-58 | 184 |
| MS.gene064545.t1 | MTR_8g068040 | 39.545 | 220 | 118 | 7 | 1 | 207 | 44 | 261 | 7.34e-39 | 134 |
| MS.gene064545.t1 | MTR_4g023810 | 43.333 | 210 | 112 | 5 | 1 | 207 | 49 | 254 | 1.27e-38 | 134 |
| MS.gene064545.t1 | MTR_8g068030 | 38.393 | 224 | 119 | 6 | 1 | 207 | 44 | 265 | 5.01e-37 | 130 |
| MS.gene064545.t1 | MTR_5g031120 | 40.183 | 219 | 110 | 6 | 9 | 207 | 62 | 279 | 7.53e-36 | 127 |
| MS.gene064545.t1 | MTR_5g031160 | 39.823 | 226 | 115 | 8 | 1 | 207 | 64 | 287 | 2.62e-35 | 126 |
| MS.gene064545.t1 | MTR_8g067980 | 39.252 | 214 | 113 | 7 | 7 | 206 | 48 | 258 | 1.59e-33 | 120 |
| MS.gene064545.t1 | MTR_5g031140 | 37.611 | 226 | 120 | 7 | 1 | 207 | 63 | 286 | 1.80e-33 | 121 |
| MS.gene064545.t1 | MTR_5g031100 | 38.938 | 226 | 117 | 8 | 1 | 207 | 55 | 278 | 4.15e-33 | 120 |
| MS.gene064545.t1 | MTR_8g068050 | 36.279 | 215 | 121 | 5 | 9 | 208 | 61 | 274 | 1.40e-32 | 124 |
| MS.gene064545.t1 | MTR_8g067990 | 38.863 | 211 | 112 | 8 | 9 | 205 | 50 | 257 | 6.05e-32 | 117 |
| MS.gene064545.t1 | MTR_5g031090 | 38.182 | 220 | 114 | 8 | 9 | 207 | 57 | 275 | 2.13e-31 | 115 |
| MS.gene064545.t1 | MTR_8g023510 | 38.028 | 213 | 125 | 5 | 1 | 208 | 50 | 260 | 2.63e-31 | 115 |
| MS.gene064545.t1 | MTR_8g067720 | 37.056 | 197 | 114 | 5 | 20 | 207 | 62 | 257 | 4.83e-30 | 116 |
| MS.gene064545.t1 | MTR_8g067735 | 38.384 | 198 | 107 | 7 | 24 | 208 | 84 | 279 | 9.77e-30 | 115 |
| MS.gene064545.t1 | MTR_4g056360 | 37.981 | 208 | 92 | 6 | 1 | 205 | 58 | 231 | 3.16e-29 | 109 |
| MS.gene064545.t1 | MTR_5g031030 | 36.449 | 214 | 118 | 6 | 11 | 207 | 62 | 274 | 1.58e-28 | 108 |
| MS.gene064545.t1 | MTR_8g067630 | 36.269 | 193 | 112 | 5 | 24 | 205 | 71 | 263 | 5.69e-28 | 110 |
| MS.gene064545.t1 | MTR_8g067690 | 36.923 | 195 | 111 | 5 | 24 | 207 | 101 | 294 | 2.87e-27 | 108 |
| MS.gene064545.t1 | MTR_4g093080 | 36.869 | 198 | 111 | 6 | 22 | 207 | 64 | 259 | 3.77e-27 | 108 |
| MS.gene064545.t1 | MTR_4g056320 | 35.096 | 208 | 94 | 6 | 1 | 205 | 58 | 227 | 2.20e-26 | 102 |
| MS.gene064545.t1 | MTR_8g067960 | 35.981 | 214 | 117 | 8 | 9 | 207 | 33 | 241 | 2.93e-26 | 101 |
| MS.gene064545.t1 | MTR_4g093140 | 35.714 | 210 | 120 | 7 | 10 | 207 | 58 | 264 | 1.01e-25 | 104 |
| MS.gene064545.t1 | MTR_1g014240 | 33.838 | 198 | 116 | 5 | 24 | 207 | 79 | 275 | 1.48e-25 | 103 |
| MS.gene064545.t1 | MTR_8g067930 | 35.533 | 197 | 112 | 7 | 24 | 207 | 65 | 259 | 1.97e-25 | 103 |
| MS.gene064545.t1 | MTR_4g093110 | 35.714 | 210 | 120 | 7 | 10 | 207 | 58 | 264 | 2.91e-25 | 103 |
| MS.gene064545.t1 | MTR_7g115740 | 35.323 | 201 | 110 | 8 | 22 | 207 | 65 | 260 | 5.65e-25 | 102 |
| MS.gene064545.t1 | MTR_4g093070 | 34.450 | 209 | 126 | 3 | 10 | 207 | 58 | 266 | 9.31e-25 | 101 |
| MS.gene064545.t1 | MTR_8g067940 | 34.821 | 224 | 120 | 9 | 8 | 207 | 60 | 281 | 2.90e-24 | 97.1 |
| MS.gene064545.t1 | MTR_7g116130 | 31.696 | 224 | 132 | 9 | 1 | 207 | 42 | 261 | 9.04e-21 | 90.1 |
| MS.gene064545.t1 | MTR_4g093040 | 35.000 | 200 | 110 | 8 | 2 | 186 | 56 | 250 | 9.67e-20 | 87.0 |
| MS.gene064545.t1 | MTR_3g463370 | 38.365 | 159 | 85 | 5 | 60 | 207 | 66 | 222 | 4.79e-19 | 82.4 |
| MS.gene064545.t1 | MTR_4g093050 | 31.553 | 206 | 109 | 9 | 22 | 206 | 71 | 265 | 2.19e-18 | 83.2 |
| MS.gene064545.t1 | MTR_4g093040 | 36.310 | 168 | 90 | 7 | 34 | 186 | 3 | 168 | 8.16e-18 | 81.3 |
| MS.gene064545.t1 | MTR_1g048360 | 30.583 | 206 | 126 | 5 | 11 | 205 | 61 | 260 | 6.20e-17 | 79.0 |
| MS.gene064545.t1 | MTR_5g025020 | 31.383 | 188 | 110 | 5 | 18 | 187 | 82 | 268 | 2.18e-16 | 77.4 |
| MS.gene064545.t1 | MTR_7g062750 | 27.876 | 226 | 138 | 6 | 1 | 203 | 35 | 258 | 6.88e-15 | 73.2 |
| MS.gene064545.t1 | MTR_7g063030 | 30.222 | 225 | 132 | 7 | 1 | 204 | 35 | 255 | 9.11e-14 | 69.7 |
| MS.gene064545.t1 | MTR_7g063030 | 30.222 | 225 | 132 | 7 | 1 | 204 | 41 | 261 | 9.67e-14 | 69.7 |
| MS.gene064545.t1 | MTR_5g077100 | 29.245 | 212 | 130 | 7 | 8 | 207 | 49 | 252 | 4.14e-13 | 67.8 |
| MS.gene064545.t1 | MTR_7g062940 | 27.679 | 224 | 140 | 6 | 1 | 204 | 35 | 256 | 4.25e-13 | 67.8 |
| MS.gene064545.t1 | MTR_7g062890 | 29.956 | 227 | 130 | 10 | 1 | 203 | 35 | 256 | 9.30e-13 | 66.6 |
| MS.gene064545.t1 | MTR_7g062770 | 27.434 | 226 | 139 | 7 | 1 | 203 | 37 | 260 | 1.07e-12 | 66.6 |
| MS.gene064545.t1 | MTR_3g007870 | 30.374 | 214 | 125 | 8 | 3 | 203 | 43 | 245 | 3.76e-12 | 65.1 |
| MS.gene064545.t1 | MTR_7g063010 | 28.959 | 221 | 139 | 5 | 1 | 204 | 38 | 257 | 8.08e-12 | 63.9 |
| MS.gene064545.t1 | MTR_5g095970 | 30.374 | 214 | 125 | 8 | 3 | 203 | 43 | 245 | 1.19e-11 | 63.5 |
| MS.gene064545.t1 | MTR_7g062950 | 26.009 | 223 | 143 | 6 | 1 | 203 | 35 | 255 | 9.34e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064545.t1 | AT5G10530 | 38.182 | 220 | 108 | 12 | 9 | 207 | 42 | 254 | 2.92e-26 | 105 |
| MS.gene064545.t1 | AT5G65600 | 34.807 | 181 | 104 | 5 | 20 | 186 | 73 | 253 | 1.29e-22 | 95.5 |
| MS.gene064545.t1 | AT2G37710 | 29.596 | 223 | 135 | 7 | 1 | 203 | 41 | 261 | 2.14e-16 | 77.4 |
| MS.gene064545.t1 | AT5G55830 | 30.317 | 221 | 128 | 9 | 8 | 206 | 51 | 267 | 1.19e-14 | 72.4 |
| MS.gene064545.t1 | AT3G53810 | 27.232 | 224 | 139 | 7 | 1 | 203 | 41 | 261 | 2.51e-12 | 65.5 |
| MS.gene064545.t1 | AT5G03140 | 28.155 | 206 | 133 | 6 | 8 | 201 | 55 | 257 | 2.90e-12 | 65.5 |
| MS.gene064545.t1 | AT4G02420 | 28.502 | 207 | 119 | 8 | 3 | 186 | 44 | 244 | 4.99e-12 | 64.7 |
| MS.gene064545.t1 | AT1G70110 | 32.812 | 128 | 80 | 3 | 3 | 125 | 38 | 164 | 1.89e-11 | 63.2 |
| MS.gene064545.t1 | AT2G43700 | 25.778 | 225 | 137 | 8 | 1 | 201 | 29 | 247 | 2.88e-11 | 62.4 |
| MS.gene064545.t1 | AT4G04960 | 36.752 | 117 | 68 | 3 | 12 | 123 | 47 | 162 | 4.13e-11 | 62.0 |
| MS.gene064545.t1 | AT4G04960 | 36.975 | 119 | 69 | 3 | 12 | 125 | 47 | 164 | 4.37e-11 | 62.0 |
| MS.gene064545.t1 | AT4G02410 | 26.906 | 223 | 141 | 7 | 1 | 203 | 43 | 263 | 8.04e-11 | 61.2 |
Find 60 sgRNAs with CRISPR-Local
Find 61 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCAATATGTGGATATT+TGG | 0.097321 | 3.1:-40856311 | None:intergenic |
| ATTCAAATCCAGTACCTATT+TGG | 0.139273 | 3.1:+40856062 | MS.gene064545:CDS |
| ATTCCAATATGTGGATATTT+GGG | 0.332158 | 3.1:-40856310 | None:intergenic |
| AATGCTTTCAATCAATTTGT+TGG | 0.337022 | 3.1:+40856253 | MS.gene064545:CDS |
| CGTCGCTTCCTTCTCCTTCA+CGG | 0.351878 | 3.1:+40856114 | MS.gene064545:CDS |
| TTCAAATCCAGTACCTATTT+GGG | 0.355247 | 3.1:+40856063 | MS.gene064545:CDS |
| CTGTTCTCCCACCGAACGTT+AGG | 0.356094 | 3.1:+40856500 | MS.gene064545:CDS |
| CGTCCAGTACTAGGGGTAGA+AGG | 0.381092 | 3.1:-40856031 | None:intergenic |
| AATTGCAACACATTCATTCA+TGG | 0.387095 | 3.1:+40856560 | MS.gene064545:CDS |
| CCAGGACAACACCATGGAAC+AGG | 0.392747 | 3.1:+40856356 | MS.gene064545:CDS |
| GATCCCAAATATCCACATAT+TGG | 0.393490 | 3.1:+40856307 | MS.gene064545:CDS |
| TTCCTTCTCCTTCACGGTTG+AGG | 0.396041 | 3.1:+40856120 | MS.gene064545:CDS |
| TACAACACCCGTCCAGTACT+AGG | 0.401738 | 3.1:-40856040 | None:intergenic |
| CCAGTAGTACTATCCCAAAT+AGG | 0.416374 | 3.1:-40856076 | None:intergenic |
| AATTTGACCATTGTTGTTAG+TGG | 0.417231 | 3.1:-40856446 | None:intergenic |
| ATGGTCTTTCACTTCAACCT+TGG | 0.440637 | 3.1:+40856579 | MS.gene064545:CDS |
| GAACAGGGTGAGTGGGTCAT+TGG | 0.456672 | 3.1:+40856372 | MS.gene064545:CDS |
| AGGTTTGCACCGTAAGAGTT+GGG | 0.458648 | 3.1:-40856211 | None:intergenic |
| TTATCTGCAACAGTTACATC+TGG | 0.461701 | 3.1:+40856529 | MS.gene064545:CDS |
| CCTATTTGGGATAGTACTAC+TGG | 0.464887 | 3.1:+40856076 | MS.gene064545:CDS |
| AACCCTTCTACCCCTAGTAC+TGG | 0.466872 | 3.1:+40856028 | MS.gene064545:CDS |
| TTCACGGTTGAGGACTTTCG+AGG | 0.466937 | 3.1:+40856130 | MS.gene064545:CDS |
| GACATTCCTCCCAACTCTTA+CGG | 0.472814 | 3.1:+40856202 | MS.gene064545:CDS |
| GGACTTTCGAGGTTATAATC+AGG | 0.474533 | 3.1:+40856141 | MS.gene064545:CDS |
| CCTGTTCCATGGTGTTGTCC+TGG | 0.479573 | 3.1:-40856356 | None:intergenic |
| GTACTATCCCAAATAGGTAC+TGG | 0.485197 | 3.1:-40856070 | None:intergenic |
| ATGAATGAATGTGTTGCAAT+TGG | 0.487840 | 3.1:-40856558 | None:intergenic |
| TTAACATCAATTCCAATATG+TGG | 0.514525 | 3.1:-40856319 | None:intergenic |
| TGTTCTCCCACCGAACGTTA+GGG | 0.518184 | 3.1:+40856501 | MS.gene064545:CDS |
| GAGGTTTGCACCGTAAGAGT+TGG | 0.525841 | 3.1:-40856212 | None:intergenic |
| ACAACACCCGTCCAGTACTA+GGG | 0.530404 | 3.1:-40856039 | None:intergenic |
| GACCCACTCACCCTGTTCCA+TGG | 0.531299 | 3.1:-40856367 | None:intergenic |
| CTCCCACCGAACGTTAGGGT+TGG | 0.539338 | 3.1:+40856505 | MS.gene064545:CDS |
| GATAAACCAACCCTAACGTT+CGG | 0.542247 | 3.1:-40856511 | None:intergenic |
| AACTCTTACGGTGCAAACCT+CGG | 0.563158 | 3.1:+40856214 | MS.gene064545:CDS |
| CGAGGTTATAATCAGGCCGA+TGG | 0.567160 | 3.1:+40856148 | MS.gene064545:CDS |
| TTAACTCAGTAATTTCCGCC+AGG | 0.573107 | 3.1:+40856338 | MS.gene064545:CDS |
| CACCATGGAACAGGGTGAGT+GGG | 0.576059 | 3.1:+40856365 | MS.gene064545:CDS |
| GTCCTCAACCGTGAAGGAGA+AGG | 0.576848 | 3.1:-40856122 | None:intergenic |
| ACACCATGGAACAGGGTGAG+TGG | 0.579463 | 3.1:+40856364 | MS.gene064545:CDS |
| TTCTACCCCTAGTACTGGAC+GGG | 0.581346 | 3.1:+40856033 | MS.gene064545:CDS |
| AGTACTAGGGGTAGAAGGGT+TGG | 0.584402 | 3.1:-40856026 | None:intergenic |
| GGAGGAATGTCGCTGTCTTG+TGG | 0.587239 | 3.1:-40856190 | None:intergenic |
| CAATCTGATTTAATCATGCA+AGG | 0.610977 | 3.1:+40855965 | None:intergenic |
| GTCCAGTACTAGGGGTAGAA+GGG | 0.611247 | 3.1:-40856030 | None:intergenic |
| AACCAACCCTAACGTTCGGT+GGG | 0.611734 | 3.1:-40856507 | None:intergenic |
| CAGGACAACACCATGGAACA+GGG | 0.615749 | 3.1:+40856357 | MS.gene064545:CDS |
| TCGAAAGTCCTCAACCGTGA+AGG | 0.618628 | 3.1:-40856128 | None:intergenic |
| AAACCAACCCTAACGTTCGG+TGG | 0.620337 | 3.1:-40856508 | None:intergenic |
| CTTCTACCCCTAGTACTGGA+CGG | 0.637229 | 3.1:+40856032 | MS.gene064545:CDS |
| TCTGCAACAGTTACATCTGG+CGG | 0.650112 | 3.1:+40856532 | MS.gene064545:CDS |
| AAGAAAGAAGATGATTCCAT+CGG | 0.660410 | 3.1:-40856164 | None:intergenic |
| GTTCCATGGTGTTGTCCTGG+CGG | 0.669311 | 3.1:-40856353 | None:intergenic |
| TTTCCGCCAGGACAACACCA+TGG | 0.669928 | 3.1:+40856350 | MS.gene064545:CDS |
| GTAGGAGACCAATCATGCCA+AGG | 0.673324 | 3.1:-40856596 | None:intergenic |
| CAACACCCGTCCAGTACTAG+GGG | 0.673443 | 3.1:-40856038 | None:intergenic |
| ATATTTGGGATCATACACAT+TGG | 0.675730 | 3.1:-40856296 | None:intergenic |
| GTTGCTGCCACTAACAACAA+TGG | 0.677120 | 3.1:+40856439 | MS.gene064545:CDS |
| TTTGCACCGTAAGAGTTGGG+AGG | 0.677768 | 3.1:-40856208 | None:intergenic |
| TTTGCGCATCAACTACTCCG+AGG | 0.701059 | 3.1:-40856231 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGCTTTCAATCAATTTGT+TGG | + | chr3.1:40856253-40856272 | MS.gene064545:CDS | 25.0% |
| ! | AATTCCAATATGTGGATATT+TGG | - | chr3.1:40856314-40856333 | None:intergenic | 25.0% |
| ! | ATTCCAATATGTGGATATTT+GGG | - | chr3.1:40856313-40856332 | None:intergenic | 25.0% |
| ! | TTAACATCAATTCCAATATG+TGG | - | chr3.1:40856322-40856341 | None:intergenic | 25.0% |
| !!! | AGTACTGAGATTTTTTCAAA+TGG | + | chr3.1:40855989-40856008 | MS.gene064545:CDS | 25.0% |
| !!! | GATTTTTTCAAATGGGATAA+TGG | + | chr3.1:40855997-40856016 | MS.gene064545:CDS | 25.0% |
| !!! | GTACTGAGATTTTTTCAAAT+GGG | + | chr3.1:40855990-40856009 | MS.gene064545:CDS | 25.0% |
| AAGAAAGAAGATGATTCCAT+CGG | - | chr3.1:40856167-40856186 | None:intergenic | 30.0% | |
| AATTGCAACACATTCATTCA+TGG | + | chr3.1:40856560-40856579 | MS.gene064545:CDS | 30.0% | |
| ATGAATGAATGTGTTGCAAT+TGG | - | chr3.1:40856561-40856580 | None:intergenic | 30.0% | |
| ATTCAAATCCAGTACCTATT+TGG | + | chr3.1:40856062-40856081 | MS.gene064545:CDS | 30.0% | |
| TTCAAATCCAGTACCTATTT+GGG | + | chr3.1:40856063-40856082 | MS.gene064545:CDS | 30.0% | |
| ! | AATTTGACCATTGTTGTTAG+TGG | - | chr3.1:40856449-40856468 | None:intergenic | 30.0% |
| ! | ATATTTGGGATCATACACAT+TGG | - | chr3.1:40856299-40856318 | None:intergenic | 30.0% |
| GATCCCAAATATCCACATAT+TGG | + | chr3.1:40856307-40856326 | MS.gene064545:CDS | 35.0% | |
| TTATCTGCAACAGTTACATC+TGG | + | chr3.1:40856529-40856548 | MS.gene064545:CDS | 35.0% | |
| ATGGTCTTTCACTTCAACCT+TGG | + | chr3.1:40856579-40856598 | MS.gene064545:CDS | 40.0% | |
| CCAGTAGTACTATCCCAAAT+AGG | - | chr3.1:40856079-40856098 | None:intergenic | 40.0% | |
| GATAAACCAACCCTAACGTT+CGG | - | chr3.1:40856514-40856533 | None:intergenic | 40.0% | |
| GGACTTTCGAGGTTATAATC+AGG | + | chr3.1:40856141-40856160 | MS.gene064545:CDS | 40.0% | |
| GTACTATCCCAAATAGGTAC+TGG | - | chr3.1:40856073-40856092 | None:intergenic | 40.0% | |
| TTAACTCAGTAATTTCCGCC+AGG | + | chr3.1:40856338-40856357 | MS.gene064545:CDS | 40.0% | |
| ! | CCTATTTGGGATAGTACTAC+TGG | + | chr3.1:40856076-40856095 | MS.gene064545:CDS | 40.0% |
| AACTCTTACGGTGCAAACCT+CGG | + | chr3.1:40856214-40856233 | MS.gene064545:CDS | 45.0% | |
| AGGTTTGCACCGTAAGAGTT+GGG | - | chr3.1:40856214-40856233 | None:intergenic | 45.0% | |
| GACATTCCTCCCAACTCTTA+CGG | + | chr3.1:40856202-40856221 | MS.gene064545:CDS | 45.0% | |
| GTTGCTGCCACTAACAACAA+TGG | + | chr3.1:40856439-40856458 | MS.gene064545:CDS | 45.0% | |
| TCTGCAACAGTTACATCTGG+CGG | + | chr3.1:40856532-40856551 | MS.gene064545:CDS | 45.0% | |
| AAACCAACCCTAACGTTCGG+TGG | - | chr3.1:40856511-40856530 | None:intergenic | 50.0% | |
| AACCAACCCTAACGTTCGGT+GGG | - | chr3.1:40856510-40856529 | None:intergenic | 50.0% | |
| AACCCTTCTACCCCTAGTAC+TGG | + | chr3.1:40856028-40856047 | MS.gene064545:CDS | 50.0% | |
| ACAACACCCGTCCAGTACTA+GGG | - | chr3.1:40856042-40856061 | None:intergenic | 50.0% | |
| AGTACTAGGGGTAGAAGGGT+TGG | - | chr3.1:40856029-40856048 | None:intergenic | 50.0% | |
| CAGGACAACACCATGGAACA+GGG | + | chr3.1:40856357-40856376 | MS.gene064545:CDS | 50.0% | |
| CGAGGTTATAATCAGGCCGA+TGG | + | chr3.1:40856148-40856167 | MS.gene064545:CDS | 50.0% | |
| GAGGTTTGCACCGTAAGAGT+TGG | - | chr3.1:40856215-40856234 | None:intergenic | 50.0% | |
| GTCCAGTACTAGGGGTAGAA+GGG | - | chr3.1:40856033-40856052 | None:intergenic | 50.0% | |
| TACAACACCCGTCCAGTACT+AGG | - | chr3.1:40856043-40856062 | None:intergenic | 50.0% | |
| TCGAAAGTCCTCAACCGTGA+AGG | - | chr3.1:40856131-40856150 | None:intergenic | 50.0% | |
| TGTTCTCCCACCGAACGTTA+GGG | + | chr3.1:40856501-40856520 | MS.gene064545:CDS | 50.0% | |
| TTCACGGTTGAGGACTTTCG+AGG | + | chr3.1:40856130-40856149 | MS.gene064545:CDS | 50.0% | |
| TTCCTTCTCCTTCACGGTTG+AGG | + | chr3.1:40856120-40856139 | MS.gene064545:CDS | 50.0% | |
| TTTGCACCGTAAGAGTTGGG+AGG | - | chr3.1:40856211-40856230 | None:intergenic | 50.0% | |
| TTTGCGCATCAACTACTCCG+AGG | - | chr3.1:40856234-40856253 | None:intergenic | 50.0% | |
| ! | CTTCTACCCCTAGTACTGGA+CGG | + | chr3.1:40856032-40856051 | MS.gene064545:CDS | 50.0% |
| ! | TTCTACCCCTAGTACTGGAC+GGG | + | chr3.1:40856033-40856052 | MS.gene064545:CDS | 50.0% |
| ACACCATGGAACAGGGTGAG+TGG | + | chr3.1:40856364-40856383 | MS.gene064545:CDS | 55.0% | |
| CAACACCCGTCCAGTACTAG+GGG | - | chr3.1:40856041-40856060 | None:intergenic | 55.0% | |
| CACCATGGAACAGGGTGAGT+GGG | + | chr3.1:40856365-40856384 | MS.gene064545:CDS | 55.0% | |
| CCAGGACAACACCATGGAAC+AGG | + | chr3.1:40856356-40856375 | MS.gene064545:CDS | 55.0% | |
| CGTCCAGTACTAGGGGTAGA+AGG | - | chr3.1:40856034-40856053 | None:intergenic | 55.0% | |
| CGTCGCTTCCTTCTCCTTCA+CGG | + | chr3.1:40856114-40856133 | MS.gene064545:CDS | 55.0% | |
| CTGTTCTCCCACCGAACGTT+AGG | + | chr3.1:40856500-40856519 | MS.gene064545:CDS | 55.0% | |
| GAACAGGGTGAGTGGGTCAT+TGG | + | chr3.1:40856372-40856391 | MS.gene064545:CDS | 55.0% | |
| GGAGGAATGTCGCTGTCTTG+TGG | - | chr3.1:40856193-40856212 | None:intergenic | 55.0% | |
| GTCCTCAACCGTGAAGGAGA+AGG | - | chr3.1:40856125-40856144 | None:intergenic | 55.0% | |
| TTTCCGCCAGGACAACACCA+TGG | + | chr3.1:40856350-40856369 | MS.gene064545:CDS | 55.0% | |
| !! | CCTGTTCCATGGTGTTGTCC+TGG | - | chr3.1:40856359-40856378 | None:intergenic | 55.0% |
| !! | GTTCCATGGTGTTGTCCTGG+CGG | - | chr3.1:40856356-40856375 | None:intergenic | 55.0% |
| CTCCCACCGAACGTTAGGGT+TGG | + | chr3.1:40856505-40856524 | MS.gene064545:CDS | 60.0% | |
| GACCCACTCACCCTGTTCCA+TGG | - | chr3.1:40856370-40856389 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40855980 | 40856606 | 40855980 | ID=MS.gene064545 |
| chr3.1 | mRNA | 40855980 | 40856606 | 40855980 | ID=MS.gene064545.t1;Parent=MS.gene064545 |
| chr3.1 | exon | 40855980 | 40856606 | 40855980 | ID=MS.gene064545.t1.exon1;Parent=MS.gene064545.t1 |
| chr3.1 | CDS | 40855980 | 40856606 | 40855980 | ID=cds.MS.gene064545.t1;Parent=MS.gene064545.t1 |
| Gene Sequence |
| Protein sequence |
