Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06455.t1 | XP_003602530.1 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 2.90E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06455.t1 | F4KFC7 | 49.7 | 364 | 165 | 8 | 1 | 357 | 1 | 353 | 2.8e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06455.t1 | G7JAV9 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 2.1e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06455.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049335 | MS.gene06455 | 0.995616 | 4.45E-218 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06455.t1 | MTR_3g095380 | 98.319 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 0.0 | 726 |
| MS.gene06455.t1 | MTR_3g095380 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 642 |
| MS.gene06455.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 4.00e-23 | 100 |
| MS.gene06455.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 4.05e-23 | 100 |
| MS.gene06455.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 3.96e-22 | 95.9 |
| MS.gene06455.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 4.23e-22 | 95.5 |
| MS.gene06455.t1 | MTR_6g041880 | 52.000 | 75 | 34 | 2 | 52 | 126 | 7 | 79 | 5.43e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06455.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene06455.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene06455.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene06455.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene06455.t1 | AT5G09850 | 51.632 | 337 | 140 | 8 | 1 | 326 | 1 | 325 | 3.08e-99 | 297 |
| MS.gene06455.t1 | AT5G05140 | 25.728 | 412 | 220 | 13 | 3 | 334 | 7 | 412 | 4.75e-21 | 94.4 |
| MS.gene06455.t1 | AT3G10820 | 29.500 | 200 | 117 | 6 | 1 | 199 | 8 | 184 | 4.30e-15 | 76.3 |
| MS.gene06455.t1 | AT3G10820 | 28.000 | 200 | 120 | 4 | 1 | 199 | 8 | 184 | 1.40e-14 | 75.5 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAACTGATTTAGGTTT+TGG | 0.207613 | 3.2:-79741460 | None:intergenic |
| GCAGAGGTAGGGGCAGTAAC+TGG | 0.242308 | 3.2:-79741517 | None:intergenic |
| GACTGTTCTCTTTCTTGATT+TGG | 0.252210 | 3.2:-79740299 | None:intergenic |
| CTATTCTCACTGTGTGGATT+TGG | 0.266353 | 3.2:-79741309 | None:intergenic |
| CCTGATGATTATGCCCATTT+GGG | 0.274665 | 3.2:-79741182 | None:intergenic |
| GTTGACCTCCGTCGCAATTC+TGG | 0.284508 | 3.2:-79740257 | None:intergenic |
| TCTTTGCGAGGAACTGATTT+AGG | 0.295138 | 3.2:-79741466 | None:intergenic |
| ACCTGATGATTATGCCCATT+TGG | 0.307811 | 3.2:-79741183 | None:intergenic |
| ACACGGCGGGCGTTGACGTC+TGG | 0.362780 | 3.2:+79740115 | MS.gene06455:CDS |
| TCAGTCTGAAGATACTTTGA+TGG | 0.368003 | 3.2:+79740603 | MS.gene06455:intron |
| CCGCGGCGCGGTTGTCGTTC+CGG | 0.369159 | 3.2:-79740333 | None:intergenic |
| GATGGAGTTGCTACAAAATC+TGG | 0.369937 | 3.2:+79740621 | MS.gene06455:CDS |
| CAGAGGTAGGGGCAGTAACT+GGG | 0.397450 | 3.2:-79741516 | None:intergenic |
| GGAAAGAAATTGTTGATGAT+TGG | 0.408203 | 3.2:+79740972 | MS.gene06455:CDS |
| TTGCAGAAAACCACCCCAAA+TGG | 0.410008 | 3.2:+79741168 | MS.gene06455:CDS |
| GTTCAGCTTCGGAGGTGTTA+CGG | 0.414057 | 3.2:-79741432 | None:intergenic |
| AACTACAAAGAGGCCGATAA+TGG | 0.421647 | 3.2:+79741738 | MS.gene06455:CDS |
| AATCAATCACCTTCAACTCT+TGG | 0.433018 | 3.2:-79740663 | None:intergenic |
| AATCGACGAACATTGCTTGA+TGG | 0.437135 | 3.2:-79740833 | None:intergenic |
| TTTGGAGAGTACGCAAAATC+AGG | 0.441104 | 3.2:-79741291 | None:intergenic |
| TATTACATTCCAAGAGTTGA+AGG | 0.441822 | 3.2:+79740654 | MS.gene06455:CDS |
| AGAGGTAGGGGCAGTAACTG+GGG | 0.442679 | 3.2:-79741515 | None:intergenic |
| CGCGATCTCCGTCGCTGCGC+AGG | 0.445659 | 3.2:+79740152 | MS.gene06455:CDS |
| GAGGTAGGGGCAGTAACTGG+GGG | 0.447109 | 3.2:-79741514 | None:intergenic |
| GAAAGAAATTGTTGATGATT+GGG | 0.457864 | 3.2:+79740973 | MS.gene06455:CDS |
| GCTGACACAGATGGGAGCTC+TGG | 0.459360 | 3.2:+79741403 | MS.gene06455:intron |
| CCGTCGCAATTCTGGCAAAT+CGG | 0.468609 | 3.2:-79740249 | None:intergenic |
| GCTTCTAGAAGATCCTCATC+AGG | 0.474811 | 3.2:+79740476 | MS.gene06455:CDS |
| GTTCTCAAGGAAGGCAGCAC+TGG | 0.479451 | 3.2:+79741945 | MS.gene06455:CDS |
| CCCAAATGGGCATAATCATC+AGG | 0.480623 | 3.2:+79741182 | MS.gene06455:CDS |
| AGGTAGGGGCAGTAACTGGG+GGG | 0.499817 | 3.2:-79741513 | None:intergenic |
| TTTCCTTCAGACTGCGGCGT+CGG | 0.501959 | 3.2:-79740372 | None:intergenic |
| ATCAAGCAATGTTCGTCGAT+TGG | 0.507263 | 3.2:+79740835 | MS.gene06455:CDS |
| AAGAGGGAAAAGCACTCTCA+TGG | 0.508075 | 3.2:+79741012 | MS.gene06455:CDS |
| TGCAGAAAACCACCCCAAAT+GGG | 0.518736 | 3.2:+79741169 | MS.gene06455:CDS |
| CCTTCAGACTGCGGCGTCGG+AGG | 0.522259 | 3.2:-79740369 | None:intergenic |
| GGCTTGCTGCTGCAAGAAAA+CGG | 0.522716 | 3.2:+79741706 | MS.gene06455:CDS |
| TGTCGTTCCGGACTCAGACT+AGG | 0.527954 | 3.2:-79740321 | None:intergenic |
| CCTAAGTCAAAAGCAAAGAA+TGG | 0.530585 | 3.2:+79741893 | MS.gene06455:CDS |
| ATAACGCCGGTGAGCTAAAG+AGG | 0.531488 | 3.2:+79740175 | MS.gene06455:CDS |
| GCAAAGAACAATTCAGGTGA+TGG | 0.534043 | 3.2:+79741856 | MS.gene06455:CDS |
| GAACAGTCCTAGTCTGAGTC+CGG | 0.534784 | 3.2:+79740314 | MS.gene06455:CDS |
| CCTCCGACGCCGCAGTCTGA+AGG | 0.534970 | 3.2:+79740369 | MS.gene06455:CDS |
| AAAGGTGGTGGCAGTTCTCA+AGG | 0.538937 | 3.2:+79741932 | MS.gene06455:CDS |
| TTTGTGTAGGAAACTGACAT+AGG | 0.539813 | 3.2:+79740782 | MS.gene06455:intron |
| TTTGCAAAGCACAAAGGTGG+TGG | 0.542006 | 3.2:+79741920 | MS.gene06455:CDS |
| CATTCTGAGGAGCAGAGGTA+GGG | 0.542374 | 3.2:-79741528 | None:intergenic |
| ATTCTGAGGAGCAGAGGTAG+GGG | 0.547934 | 3.2:-79741527 | None:intergenic |
| GGTAGGGGCAGTAACTGGGG+GGG | 0.560913 | 3.2:-79741512 | None:intergenic |
| TTGTGTAGGAAACTGACATA+GGG | 0.564467 | 3.2:+79740783 | MS.gene06455:intron |
| GGCGTTATCCTGCGCAGCGA+CGG | 0.566982 | 3.2:-79740160 | None:intergenic |
| GTGAAGCAGAATCCACAAAG+AGG | 0.569929 | 3.2:+79740995 | MS.gene06455:CDS |
| TTTGGAGGTGGGTCTTTGCG+AGG | 0.573343 | 3.2:-79741478 | None:intergenic |
| ATGATTATGCCCATTTGGGG+TGG | 0.576734 | 3.2:-79741178 | None:intergenic |
| AGAGGGAAAAGCACTCTCAT+GGG | 0.577480 | 3.2:+79741013 | MS.gene06455:CDS |
| GAGGAGAAGAGACGGAATCG+TGG | 0.579304 | 3.2:+79740194 | MS.gene06455:CDS |
| ATTCAAAACCGTACATTCTG+AGG | 0.580864 | 3.2:-79741541 | None:intergenic |
| ACATTCTGAGGAGCAGAGGT+AGG | 0.580912 | 3.2:-79741529 | None:intergenic |
| AGCTTCGGAGGTGTTACGGT+CGG | 0.581005 | 3.2:-79741428 | None:intergenic |
| GAGCTAAAGAGGAGAAGAGA+CGG | 0.582096 | 3.2:+79740186 | MS.gene06455:CDS |
| CGATCTATATTACACACGGC+GGG | 0.584757 | 3.2:+79740102 | MS.gene06455:CDS |
| GAACGACAACCGCGCCGCGG+CGG | 0.588629 | 3.2:+79740336 | MS.gene06455:CDS |
| TCTTCTCCTCTTTAGCTCAC+CGG | 0.592478 | 3.2:-79740181 | None:intergenic |
| TCATCAAACAAACCACCGTA+AGG | 0.594373 | 3.2:-79740423 | None:intergenic |
| GATGAGGAGATAGATCCTTA+CGG | 0.597718 | 3.2:+79740408 | MS.gene06455:CDS |
| CCGCCGTGTGTAATATAGAT+CGG | 0.605511 | 3.2:-79740101 | None:intergenic |
| TAATTAAACAAAACCTGATG+AGG | 0.606618 | 3.2:-79740489 | None:intergenic |
| TACTTTGCAAAGCACAAAGG+TGG | 0.607829 | 3.2:+79741917 | MS.gene06455:CDS |
| AAACGAAGACGGTGAAGATG+AGG | 0.609578 | 3.2:+79740392 | MS.gene06455:CDS |
| GAAGAAGCTCCGCCGCGGCG+CGG | 0.611025 | 3.2:-79740345 | None:intergenic |
| CTGCGCAGCGACGGAGATCG+CGG | 0.611264 | 3.2:-79740151 | None:intergenic |
| CCGATTTGCCAGAATTGCGA+CGG | 0.612546 | 3.2:+79740249 | MS.gene06455:CDS |
| TGAAGCAGAATCCACAAAGA+GGG | 0.616018 | 3.2:+79740996 | MS.gene06455:CDS |
| CGGAAATCGTCCAAATCCAT+CGG | 0.620451 | 3.2:-79740081 | None:intergenic |
| GTGGTGGCAGTTCTCAAGGA+AGG | 0.622677 | 3.2:+79741936 | MS.gene06455:CDS |
| CCGTACATTCTGAGGAGCAG+AGG | 0.628754 | 3.2:-79741533 | None:intergenic |
| CTGATGATTATGCCCATTTG+GGG | 0.635715 | 3.2:-79741181 | None:intergenic |
| CAGTCTGAAGGAAACGAAGA+CGG | 0.636870 | 3.2:+79740381 | MS.gene06455:CDS |
| ATTTGCCAGAATTGCGACGG+AGG | 0.638773 | 3.2:+79740252 | MS.gene06455:CDS |
| GCGTCTCTACGCTGCCACCA+CGG | 0.639790 | 3.2:+79740218 | MS.gene06455:CDS |
| GGTTACTTTGCAAAGCACAA+AGG | 0.645193 | 3.2:+79741914 | MS.gene06455:CDS |
| AAGACCCACCTCCAAAACCA+AGG | 0.647167 | 3.2:+79741485 | MS.gene06455:CDS |
| GGAGTTGCTACAAAATCTGG+TGG | 0.648131 | 3.2:+79740624 | MS.gene06455:CDS |
| TGTAGGAAACTGACATAGGG+AGG | 0.652621 | 3.2:+79740786 | MS.gene06455:intron |
| CCGGAACGACAACCGCGCCG+CGG | 0.654440 | 3.2:+79740333 | MS.gene06455:CDS |
| GTCGCTGCGCAGGATAACGC+CGG | 0.655654 | 3.2:+79740162 | MS.gene06455:CDS |
| GCTTCAAGCGAACTACAAAG+AGG | 0.673966 | 3.2:+79741728 | MS.gene06455:CDS |
| TCTTCGTTTCCTTCAGACTG+CGG | 0.687107 | 3.2:-79740378 | None:intergenic |
| GAGGAGAAGAAGCTCCGCCG+CGG | 0.688012 | 3.2:-79740350 | None:intergenic |
| TTTCCGATCTATATTACACA+CGG | 0.691280 | 3.2:+79740098 | MS.gene06455:CDS |
| AATCGGAGTAACCTCCGTGG+TGG | 0.706021 | 3.2:-79740232 | None:intergenic |
| GAGGAGATAGATCCTTACGG+TGG | 0.724438 | 3.2:+79740411 | MS.gene06455:CDS |
| CCGATCTATATTACACACGG+CGG | 0.755687 | 3.2:+79740101 | MS.gene06455:CDS |
| GCAAATCGGAGTAACCTCCG+TGG | 0.764862 | 3.2:-79740235 | None:intergenic |
| TCTCTACGCTGCCACCACGG+AGG | 0.775314 | 3.2:+79740221 | MS.gene06455:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCAATTTTTAATGT+TGG | + | chr3.2:79740710-79740729 | MS.gene06455:intron | 10.0% |
| !!! | AACAAATTTTCAACCATTAT+CGG | - | chr3.2:79741754-79741773 | None:intergenic | 20.0% |
| !!! | ATGGGTAATGTTAATATTTT+TGG | + | chr3.2:79741031-79741050 | MS.gene06455:intron | 20.0% |
| !!! | GATTTGTTTTTTATTTGTGT+AGG | + | chr3.2:79740769-79740788 | MS.gene06455:intron | 20.0% |
| !!! | TGGGTAATGTTAATATTTTT+GGG | + | chr3.2:79741032-79741051 | MS.gene06455:intron | 20.0% |
| !!! | TTTTTGTTAAAGTTTGTTGT+TGG | + | chr3.2:79741565-79741584 | MS.gene06455:intron | 20.0% |
| ! | AAAAAAGCAAAGAACAATTC+AGG | + | chr3.2:79741850-79741869 | MS.gene06455:CDS | 25.0% |
| ! | ACTTCACAAAATTAACACTA+GGG | - | chr3.2:79741614-79741633 | None:intergenic | 25.0% |
| ! | ATTCATGTGAAATTCGTTAA+TGG | + | chr3.2:79741102-79741121 | MS.gene06455:intron | 25.0% |
| ! | GTTAAAAAGTAGGAAGTTAA+AGG | + | chr3.2:79741070-79741089 | MS.gene06455:intron | 25.0% |
| ! | TAATTAAACAAAACCTGATG+AGG | - | chr3.2:79740492-79740511 | None:intergenic | 25.0% |
| ! | TTGTCAAAGAGTTAAAAAGT+AGG | + | chr3.2:79741060-79741079 | MS.gene06455:intron | 25.0% |
| !!! | GAAAGAAATTGTTGATGATT+GGG | + | chr3.2:79740973-79740992 | MS.gene06455:CDS | 25.0% |
| !!! | GTGAATTTTTGATTATGTGT+AGG | + | chr3.2:79740945-79740964 | MS.gene06455:intron | 25.0% |
| ATCAACCAAATGCAAACAAA+AGG | - | chr3.2:79741370-79741389 | None:intergenic | 30.0% | |
| CAACAAGGTTAAAGGAATAT+TGG | - | chr3.2:79741344-79741363 | None:intergenic | 30.0% | |
| CACTTCACAAAATTAACACT+AGG | - | chr3.2:79741615-79741634 | None:intergenic | 30.0% | |
| CTTCACAAAATTAACACTAG+GGG | - | chr3.2:79741613-79741632 | None:intergenic | 30.0% | |
| TAAACAACACACGAAACTTT+AGG | - | chr3.2:79741826-79741845 | None:intergenic | 30.0% | |
| TATTACATTCCAAGAGTTGA+AGG | + | chr3.2:79740654-79740673 | MS.gene06455:CDS | 30.0% | |
| TTTCCGATCTATATTACACA+CGG | + | chr3.2:79740098-79740117 | MS.gene06455:CDS | 30.0% | |
| !! | GGAAAGAAATTGTTGATGAT+TGG | + | chr3.2:79740972-79740991 | MS.gene06455:CDS | 30.0% |
| !! | TTTTGATTATGTGTAGGAAG+TGG | + | chr3.2:79740951-79740970 | MS.gene06455:intron | 30.0% |
| !!! | AATGCTGTTTTTTGTAGCAT+TGG | + | chr3.2:79740914-79740933 | MS.gene06455:intron | 30.0% |
| !!! | ACTGATTTAGGTTTTGGTTT+TGG | - | chr3.2:79741457-79741476 | None:intergenic | 30.0% |
| AAGTAGGAAGTTAAAGGAGT+TGG | + | chr3.2:79741076-79741095 | MS.gene06455:intron | 35.0% | |
| AATCAATCACCTTCAACTCT+TGG | - | chr3.2:79740666-79740685 | None:intergenic | 35.0% | |
| ATTCAAAACCGTACATTCTG+AGG | - | chr3.2:79741544-79741563 | None:intergenic | 35.0% | |
| CCTAAGTCAAAAGCAAAGAA+TGG | + | chr3.2:79741893-79741912 | MS.gene06455:CDS | 35.0% | |
| GACTGTTCTCTTTCTTGATT+TGG | - | chr3.2:79740302-79740321 | None:intergenic | 35.0% | |
| TATTCAACATTTGCAGCTGA+TGG | + | chr3.2:79741135-79741154 | MS.gene06455:intron | 35.0% | |
| TCAGTCTGAAGATACTTTGA+TGG | + | chr3.2:79740603-79740622 | MS.gene06455:intron | 35.0% | |
| TTGTGTAGGAAACTGACATA+GGG | + | chr3.2:79740783-79740802 | MS.gene06455:intron | 35.0% | |
| TTTGTGTAGGAAACTGACAT+AGG | + | chr3.2:79740782-79740801 | MS.gene06455:intron | 35.0% | |
| !! | AAAGGCATCAACAAGGTTAA+AGG | - | chr3.2:79741352-79741371 | None:intergenic | 35.0% |
| !! | TGATGCCTTTTGTTTGCATT+TGG | + | chr3.2:79741362-79741381 | MS.gene06455:intron | 35.0% |
| !! | TTTTGTTTGCTGACACAGAT+GGG | + | chr3.2:79741395-79741414 | MS.gene06455:intron | 35.0% |
| !! | TTTTTGTTTGCTGACACAGA+TGG | + | chr3.2:79741394-79741413 | MS.gene06455:intron | 35.0% |
| !!! | CCATTCTTTGCTTTTGACTT+AGG | - | chr3.2:79741896-79741915 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGGTTCAGCTT+CGG | - | chr3.2:79741446-79741465 | None:intergenic | 35.0% |
| AACTACAAAGAGGCCGATAA+TGG | + | chr3.2:79741738-79741757 | MS.gene06455:CDS | 40.0% | |
| AATCGACGAACATTGCTTGA+TGG | - | chr3.2:79740836-79740855 | None:intergenic | 40.0% | |
| ACCTGATGATTATGCCCATT+TGG | - | chr3.2:79741186-79741205 | None:intergenic | 40.0% | |
| ATCAAGCAATGTTCGTCGAT+TGG | + | chr3.2:79740835-79740854 | MS.gene06455:CDS | 40.0% | |
| CCTGATGATTATGCCCATTT+GGG | - | chr3.2:79741185-79741204 | None:intergenic | 40.0% | |
| CTATTCTCACTGTGTGGATT+TGG | - | chr3.2:79741312-79741331 | None:intergenic | 40.0% | |
| CTGATGATTATGCCCATTTG+GGG | - | chr3.2:79741184-79741203 | None:intergenic | 40.0% | |
| GATGAGGAGATAGATCCTTA+CGG | + | chr3.2:79740408-79740427 | MS.gene06455:CDS | 40.0% | |
| GATGGAGTTGCTACAAAATC+TGG | + | chr3.2:79740621-79740640 | MS.gene06455:CDS | 40.0% | |
| GCAAAGAACAATTCAGGTGA+TGG | + | chr3.2:79741856-79741875 | MS.gene06455:CDS | 40.0% | |
| TACTTTGCAAAGCACAAAGG+TGG | + | chr3.2:79741917-79741936 | MS.gene06455:CDS | 40.0% | |
| TCATCAAACAAACCACCGTA+AGG | - | chr3.2:79740426-79740445 | None:intergenic | 40.0% | |
| TCTCTGTCTCTGCAATCATT+CGG | - | chr3.2:79741655-79741674 | None:intergenic | 40.0% | |
| TGAAGCAGAATCCACAAAGA+GGG | + | chr3.2:79740996-79741015 | MS.gene06455:CDS | 40.0% | |
| ! | GGTTACTTTGCAAAGCACAA+AGG | + | chr3.2:79741914-79741933 | MS.gene06455:CDS | 40.0% |
| ! | TCTTTGCGAGGAACTGATTT+AGG | - | chr3.2:79741469-79741488 | None:intergenic | 40.0% |
| ! | TTTGGAGAGTACGCAAAATC+AGG | - | chr3.2:79741294-79741313 | None:intergenic | 40.0% |
| !! | AGAGCAATTTTGATGCAGAG+AGG | + | chr3.2:79741685-79741704 | MS.gene06455:CDS | 40.0% |
| !! | CGAGGAACTGATTTAGGTTT+TGG | - | chr3.2:79741463-79741482 | None:intergenic | 40.0% |
| !! | GCAAACAAAAGGCATCAACA+AGG | - | chr3.2:79741359-79741378 | None:intergenic | 40.0% |
| AAACGAAGACGGTGAAGATG+AGG | + | chr3.2:79740392-79740411 | MS.gene06455:CDS | 45.0% | |
| ATGATTATGCCCATTTGGGG+TGG | - | chr3.2:79741181-79741200 | None:intergenic | 45.0% | |
| CAGATGCTATTCTCACTGTG+TGG | - | chr3.2:79741318-79741337 | None:intergenic | 45.0% | |
| CAGTCTGAAGGAAACGAAGA+CGG | + | chr3.2:79740381-79740400 | MS.gene06455:CDS | 45.0% | |
| CCCAAATGGGCATAATCATC+AGG | + | chr3.2:79741182-79741201 | MS.gene06455:CDS | 45.0% | |
| CCGATCTATATTACACACGG+CGG | + | chr3.2:79740101-79740120 | MS.gene06455:CDS | 45.0% | |
| CCGCCGTGTGTAATATAGAT+CGG | - | chr3.2:79740104-79740123 | None:intergenic | 45.0% | |
| CGATCTATATTACACACGGC+GGG | + | chr3.2:79740102-79740121 | MS.gene06455:CDS | 45.0% | |
| GAGCTAAAGAGGAGAAGAGA+CGG | + | chr3.2:79740186-79740205 | MS.gene06455:CDS | 45.0% | |
| GCTTCAAGCGAACTACAAAG+AGG | + | chr3.2:79741728-79741747 | MS.gene06455:CDS | 45.0% | |
| GGAGTTGCTACAAAATCTGG+TGG | + | chr3.2:79740624-79740643 | MS.gene06455:CDS | 45.0% | |
| GTGAAGCAGAATCCACAAAG+AGG | + | chr3.2:79740995-79741014 | MS.gene06455:CDS | 45.0% | |
| TCTTCGTTTCCTTCAGACTG+CGG | - | chr3.2:79740381-79740400 | None:intergenic | 45.0% | |
| TGCAGAAAACCACCCCAAAT+GGG | + | chr3.2:79741169-79741188 | MS.gene06455:CDS | 45.0% | |
| TGTAGGAAACTGACATAGGG+AGG | + | chr3.2:79740786-79740805 | MS.gene06455:intron | 45.0% | |
| TTGCAGAAAACCACCCCAAA+TGG | + | chr3.2:79741168-79741187 | MS.gene06455:CDS | 45.0% | |
| TTTGCAAAGCACAAAGGTGG+TGG | + | chr3.2:79741920-79741939 | MS.gene06455:CDS | 45.0% | |
| ! | GCTTCTAGAAGATCCTCATC+AGG | + | chr3.2:79740476-79740495 | MS.gene06455:CDS | 45.0% |
| ! | TCTTCTCCTCTTTAGCTCAC+CGG | - | chr3.2:79740184-79740203 | None:intergenic | 45.0% |
| !! | AAGAGGGAAAAGCACTCTCA+TGG | + | chr3.2:79741012-79741031 | MS.gene06455:CDS | 45.0% |
| !! | AGAGGGAAAAGCACTCTCAT+GGG | + | chr3.2:79741013-79741032 | MS.gene06455:CDS | 45.0% |
| !! | AGAGTGCTTTTCCCTCTTTG+TGG | - | chr3.2:79741010-79741029 | None:intergenic | 45.0% |
| !! | TTTGGGGTGGTTTTCTGCAA+AGG | - | chr3.2:79741168-79741187 | None:intergenic | 45.0% |
| AAGACCCACCTCCAAAACCA+AGG | + | chr3.2:79741485-79741504 | MS.gene06455:CDS | 50.0% | |
| ATAACGCCGGTGAGCTAAAG+AGG | + | chr3.2:79740175-79740194 | MS.gene06455:CDS | 50.0% | |
| ATTTGCCAGAATTGCGACGG+AGG | + | chr3.2:79740252-79740271 | MS.gene06455:CDS | 50.0% | |
| CCGTCGCAATTCTGGCAAAT+CGG | - | chr3.2:79740252-79740271 | None:intergenic | 50.0% | |
| CCTCTGCTCCTCAGAATGTA+CGG | + | chr3.2:79741533-79741552 | MS.gene06455:intron | 50.0% | |
| GAACAGTCCTAGTCTGAGTC+CGG | + | chr3.2:79740314-79740333 | MS.gene06455:CDS | 50.0% | |
| GAGGAGATAGATCCTTACGG+TGG | + | chr3.2:79740411-79740430 | MS.gene06455:CDS | 50.0% | |
| ! | AAAGGTGGTGGCAGTTCTCA+AGG | + | chr3.2:79741932-79741951 | MS.gene06455:CDS | 50.0% |
| ! | ACATTCTGAGGAGCAGAGGT+AGG | - | chr3.2:79741532-79741551 | None:intergenic | 50.0% |
| ! | ATTCTGAGGAGCAGAGGTAG+GGG | - | chr3.2:79741530-79741549 | None:intergenic | 50.0% |
| ! | CATTCTGAGGAGCAGAGGTA+GGG | - | chr3.2:79741531-79741550 | None:intergenic | 50.0% |
| ! | CCGATTTGCCAGAATTGCGA+CGG | + | chr3.2:79740249-79740268 | MS.gene06455:CDS | 50.0% |
| !! | GGCTTGCTGCTGCAAGAAAA+CGG | + | chr3.2:79741706-79741725 | MS.gene06455:CDS | 50.0% |
| !! | GTTCAGCTTCGGAGGTGTTA+CGG | - | chr3.2:79741435-79741454 | None:intergenic | 50.0% |
| !!! | ATGGCCTTGGTTTTGGAGGT+GGG | - | chr3.2:79741492-79741511 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGTTCAGCTTCGG+AGG | - | chr3.2:79741443-79741462 | None:intergenic | 50.0% |
| AATCGGAGTAACCTCCGTGG+TGG | - | chr3.2:79740235-79740254 | None:intergenic | 55.0% | |
| AGAGGTAGGGGCAGTAACTG+GGG | - | chr3.2:79741518-79741537 | None:intergenic | 55.0% | |
| CAGAGGTAGGGGCAGTAACT+GGG | - | chr3.2:79741519-79741538 | None:intergenic | 55.0% | |
| GAGGAGAAGAGACGGAATCG+TGG | + | chr3.2:79740194-79740213 | MS.gene06455:CDS | 55.0% | |
| GCAAATCGGAGTAACCTCCG+TGG | - | chr3.2:79740238-79740257 | None:intergenic | 55.0% | |
| GTGGTGGCAGTTCTCAAGGA+AGG | + | chr3.2:79741936-79741955 | MS.gene06455:CDS | 55.0% | |
| GTTCTCAAGGAAGGCAGCAC+TGG | + | chr3.2:79741945-79741964 | MS.gene06455:CDS | 55.0% | |
| GTTGACCTCCGTCGCAATTC+TGG | - | chr3.2:79740260-79740279 | None:intergenic | 55.0% | |
| TGTCGTTCCGGACTCAGACT+AGG | - | chr3.2:79740324-79740343 | None:intergenic | 55.0% | |
| TTTCCTTCAGACTGCGGCGT+CGG | - | chr3.2:79740375-79740394 | None:intergenic | 55.0% | |
| TTTGGAGGTGGGTCTTTGCG+AGG | - | chr3.2:79741481-79741500 | None:intergenic | 55.0% | |
| ! | CCGTACATTCTGAGGAGCAG+AGG | - | chr3.2:79741536-79741555 | None:intergenic | 55.0% |
| !! | AGCTTCGGAGGTGTTACGGT+CGG | - | chr3.2:79741431-79741450 | None:intergenic | 55.0% |
| !!! | GATGGCCTTGGTTTTGGAGG+TGG | - | chr3.2:79741493-79741512 | None:intergenic | 55.0% |
| AGGTAGGGGCAGTAACTGGG+GGG | - | chr3.2:79741516-79741535 | None:intergenic | 60.0% | |
| GAGGTAGGGGCAGTAACTGG+GGG | - | chr3.2:79741517-79741536 | None:intergenic | 60.0% | |
| GCAGAGGTAGGGGCAGTAAC+TGG | - | chr3.2:79741520-79741539 | None:intergenic | 60.0% | |
| GCTGACACAGATGGGAGCTC+TGG | + | chr3.2:79741403-79741422 | MS.gene06455:intron | 60.0% | |
| !!! | GGGGATGGCCTTGGTTTTGG+AGG | - | chr3.2:79741496-79741515 | None:intergenic | 60.0% |
| GAGGAGAAGAAGCTCCGCCG+CGG | - | chr3.2:79740353-79740372 | None:intergenic | 65.0% | |
| GCGTCTCTACGCTGCCACCA+CGG | + | chr3.2:79740218-79740237 | MS.gene06455:CDS | 65.0% | |
| GGCGTTATCCTGCGCAGCGA+CGG | - | chr3.2:79740163-79740182 | None:intergenic | 65.0% | |
| GGTAGGGGCAGTAACTGGGG+GGG | - | chr3.2:79741515-79741534 | None:intergenic | 65.0% | |
| GTAACTGGGGGGGATGGCCT+TGG | - | chr3.2:79741505-79741524 | None:intergenic | 65.0% | |
| GTCGCTGCGCAGGATAACGC+CGG | + | chr3.2:79740162-79740181 | MS.gene06455:CDS | 65.0% | |
| TCTCTACGCTGCCACCACGG+AGG | + | chr3.2:79740221-79740240 | MS.gene06455:CDS | 65.0% | |
| !! | GGGGGGGATGGCCTTGGTTT+TGG | - | chr3.2:79741499-79741518 | None:intergenic | 65.0% |
| CCTCCGACGCCGCAGTCTGA+AGG | + | chr3.2:79740369-79740388 | MS.gene06455:CDS | 70.0% | |
| CTGCGCAGCGACGGAGATCG+CGG | - | chr3.2:79740154-79740173 | None:intergenic | 70.0% | |
| GGGGCAGTAACTGGGGGGGA+TGG | - | chr3.2:79741511-79741530 | None:intergenic | 70.0% | |
| ! | CCTTCAGACTGCGGCGTCGG+AGG | - | chr3.2:79740372-79740391 | None:intergenic | 70.0% |
| !! | ACACGGCGGGCGTTGACGTC+TGG | + | chr3.2:79740115-79740134 | MS.gene06455:CDS | 70.0% |
| CCGCGGCGCGGTTGTCGTTC+CGG | - | chr3.2:79740336-79740355 | None:intergenic | 75.0% | |
| CCGGAACGACAACCGCGCCG+CGG | + | chr3.2:79740333-79740352 | MS.gene06455:CDS | 75.0% | |
| CGCGATCTCCGTCGCTGCGC+AGG | + | chr3.2:79740152-79740171 | MS.gene06455:CDS | 75.0% | |
| GAACGACAACCGCGCCGCGG+CGG | + | chr3.2:79740336-79740355 | MS.gene06455:CDS | 75.0% | |
| GAAGAAGCTCCGCCGCGGCG+CGG | - | chr3.2:79740348-79740367 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79740084 | 79741970 | 79740084 | ID=MS.gene06455 |
| chr3.2 | mRNA | 79740084 | 79741970 | 79740084 | ID=MS.gene06455.t1;Parent=MS.gene06455 |
| chr3.2 | exon | 79740084 | 79740497 | 79740084 | ID=MS.gene06455.t1.exon1;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79740084 | 79740497 | 79740084 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79740607 | 79740675 | 79740607 | ID=MS.gene06455.t1.exon2;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79740607 | 79740675 | 79740607 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79740791 | 79740873 | 79740791 | ID=MS.gene06455.t1.exon3;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79740791 | 79740873 | 79740791 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79740967 | 79741034 | 79740967 | ID=MS.gene06455.t1.exon4;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79740967 | 79741034 | 79740967 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79741151 | 79741203 | 79741151 | ID=MS.gene06455.t1.exon5;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79741151 | 79741203 | 79741151 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79741288 | 79741321 | 79741288 | ID=MS.gene06455.t1.exon6;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79741288 | 79741321 | 79741288 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79741413 | 79741549 | 79741413 | ID=MS.gene06455.t1.exon7;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79741413 | 79741549 | 79741413 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79741666 | 79741759 | 79741666 | ID=MS.gene06455.t1.exon8;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79741666 | 79741759 | 79741666 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| chr3.2 | exon | 79741849 | 79741970 | 79741849 | ID=MS.gene06455.t1.exon9;Parent=MS.gene06455.t1 |
| chr3.2 | CDS | 79741849 | 79741970 | 79741849 | ID=cds.MS.gene06455.t1;Parent=MS.gene06455.t1 |
| Gene Sequence |
| Protein sequence |
