Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049335.t1 | XP_003602530.1 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 2.90E-163 | 584.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049335.t1 | F4KFC7 | 49.7 | 364 | 165 | 8 | 1 | 357 | 1 | 353 | 2.8e-58 | 227.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049335.t1 | G7JAV9 | 98.3 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 2.1e-163 | 584.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene049335.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049335 | MS.gene06455 | 0.995616 | 4.45E-218 | -1.69E-46 |
| MS.gene049335 | MS.gene066027 | 0.80468 | 1.92E-49 | -1.69E-46 |
| MS.gene049335 | MS.gene31013 | 0.946819 | 2.22E-105 | -1.69E-46 |
| MS.gene049335 | MS.gene33184 | 0.850542 | 1.59E-60 | -1.69E-46 |
| MS.gene049335 | MS.gene34093 | 0.801085 | 1.06E-48 | -1.69E-46 |
| MS.gene049335 | MS.gene58062 | -0.808086 | 3.68E-50 | -1.69E-46 |
| MS.gene049335 | MS.gene58282 | -0.805426 | 1.34E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049335.t1 | MTR_3g095380 | 98.319 | 357 | 6 | 0 | 1 | 357 | 1 | 357 | 0.0 | 726 |
| MS.gene049335.t1 | MTR_3g095380 | 98.113 | 318 | 6 | 0 | 1 | 318 | 1 | 318 | 0.0 | 642 |
| MS.gene049335.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 4.00e-23 | 100 |
| MS.gene049335.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 4.05e-23 | 100 |
| MS.gene049335.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 9 | 211 | 3.96e-22 | 95.9 |
| MS.gene049335.t1 | MTR_7g089140 | 31.163 | 215 | 119 | 5 | 3 | 200 | 6 | 208 | 4.23e-22 | 95.5 |
| MS.gene049335.t1 | MTR_6g041880 | 52.000 | 75 | 34 | 2 | 52 | 126 | 7 | 79 | 5.43e-13 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049335.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene049335.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene049335.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene049335.t1 | AT5G09850 | 53.804 | 368 | 144 | 10 | 1 | 357 | 1 | 353 | 1.37e-116 | 342 |
| MS.gene049335.t1 | AT5G09850 | 51.632 | 337 | 140 | 8 | 1 | 326 | 1 | 325 | 3.08e-99 | 297 |
| MS.gene049335.t1 | AT5G05140 | 25.728 | 412 | 220 | 13 | 3 | 334 | 7 | 412 | 4.75e-21 | 94.4 |
| MS.gene049335.t1 | AT3G10820 | 29.500 | 200 | 117 | 6 | 1 | 199 | 8 | 184 | 4.30e-15 | 76.3 |
| MS.gene049335.t1 | AT3G10820 | 28.000 | 200 | 120 | 4 | 1 | 199 | 8 | 184 | 1.40e-14 | 75.5 |
Find 95 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGAACTGATTTAGGTTT+TGG | 0.207613 | 3.1:-76106510 | None:intergenic |
| GCAGAGGTAGGGGCAGTAAC+TGG | 0.242308 | 3.1:-76106567 | None:intergenic |
| GACTGTTCTCTTTCTTGATT+TGG | 0.252210 | 3.1:-76105349 | None:intergenic |
| CTATTCTCACTGTGTGGATT+TGG | 0.266353 | 3.1:-76106359 | None:intergenic |
| CCTGATGATTATGCCCATTT+GGG | 0.274665 | 3.1:-76106232 | None:intergenic |
| GTTGACCTCCGTCGCAATTC+TGG | 0.284508 | 3.1:-76105307 | None:intergenic |
| TCTTTGCGAGGAACTGATTT+AGG | 0.295138 | 3.1:-76106516 | None:intergenic |
| ACCTGATGATTATGCCCATT+TGG | 0.307811 | 3.1:-76106233 | None:intergenic |
| ACACGGCGGGCGTTGACGTC+TGG | 0.362780 | 3.1:+76105165 | MS.gene049335:CDS |
| TCAGTCTGAAGATACTTTGA+TGG | 0.368003 | 3.1:+76105653 | MS.gene049335:intron |
| CCGCGGCGCGGTTGTCGTTC+CGG | 0.369159 | 3.1:-76105383 | None:intergenic |
| GATGGAGTTGCTACAAAATC+TGG | 0.369937 | 3.1:+76105671 | MS.gene049335:CDS |
| CAGAGGTAGGGGCAGTAACT+GGG | 0.397450 | 3.1:-76106566 | None:intergenic |
| GGAAAGAAATTGTTGATGAT+TGG | 0.408203 | 3.1:+76106022 | MS.gene049335:CDS |
| TTGCAGAAAACCACCCCAAA+TGG | 0.410008 | 3.1:+76106218 | MS.gene049335:CDS |
| GTTCAGCTTCGGAGGTGTTA+CGG | 0.414057 | 3.1:-76106482 | None:intergenic |
| AACTACAAAGAGGCCGATAA+TGG | 0.421647 | 3.1:+76106788 | MS.gene049335:CDS |
| AATCAATCACCTTCAACTCT+TGG | 0.433018 | 3.1:-76105713 | None:intergenic |
| AATCGACGAACATTGCTTGA+TGG | 0.437135 | 3.1:-76105883 | None:intergenic |
| TTTGGAGAGTACGCAAAATC+AGG | 0.441104 | 3.1:-76106341 | None:intergenic |
| TATTACATTCCAAGAGTTGA+AGG | 0.441822 | 3.1:+76105704 | MS.gene049335:CDS |
| AGAGGTAGGGGCAGTAACTG+GGG | 0.442679 | 3.1:-76106565 | None:intergenic |
| CGCGATCTCCGTCGCTGCGC+AGG | 0.445659 | 3.1:+76105202 | MS.gene049335:CDS |
| GAGGTAGGGGCAGTAACTGG+GGG | 0.447109 | 3.1:-76106564 | None:intergenic |
| GAAAGAAATTGTTGATGATT+GGG | 0.457864 | 3.1:+76106023 | MS.gene049335:CDS |
| GCTGACACAGATGGGAGCTC+TGG | 0.459360 | 3.1:+76106453 | MS.gene049335:intron |
| CCGTCGCAATTCTGGCAAAT+CGG | 0.468609 | 3.1:-76105299 | None:intergenic |
| GCTTCTAGAAGATCCTCATC+AGG | 0.474811 | 3.1:+76105526 | MS.gene049335:CDS |
| GTTCTCAAGGAAGGCAGCAC+TGG | 0.479451 | 3.1:+76106995 | MS.gene049335:CDS |
| CCCAAATGGGCATAATCATC+AGG | 0.480623 | 3.1:+76106232 | MS.gene049335:CDS |
| AGGTAGGGGCAGTAACTGGG+GGG | 0.499817 | 3.1:-76106563 | None:intergenic |
| TTTCCTTCAGACTGCGGCGT+CGG | 0.501959 | 3.1:-76105422 | None:intergenic |
| ATCAAGCAATGTTCGTCGAT+TGG | 0.507263 | 3.1:+76105885 | MS.gene049335:CDS |
| AAGAGGGAAAAGCACTCTCA+TGG | 0.508075 | 3.1:+76106062 | MS.gene049335:CDS |
| TGCAGAAAACCACCCCAAAT+GGG | 0.518736 | 3.1:+76106219 | MS.gene049335:CDS |
| CCTTCAGACTGCGGCGTCGG+AGG | 0.522259 | 3.1:-76105419 | None:intergenic |
| GGCTTGCTGCTGCAAGAAAA+CGG | 0.522716 | 3.1:+76106756 | MS.gene049335:CDS |
| TGTCGTTCCGGACTCAGACT+AGG | 0.527954 | 3.1:-76105371 | None:intergenic |
| CCTAAGTCAAAAGCAAAGAA+TGG | 0.530585 | 3.1:+76106943 | MS.gene049335:CDS |
| ATAACGCCGGTGAGCTAAAG+AGG | 0.531488 | 3.1:+76105225 | MS.gene049335:CDS |
| GCAAAGAACAATTCAGGTGA+TGG | 0.534043 | 3.1:+76106906 | MS.gene049335:CDS |
| GAACAGTCCTAGTCTGAGTC+CGG | 0.534784 | 3.1:+76105364 | MS.gene049335:CDS |
| CCTCCGACGCCGCAGTCTGA+AGG | 0.534970 | 3.1:+76105419 | MS.gene049335:CDS |
| AAAGGTGGTGGCAGTTCTCA+AGG | 0.538937 | 3.1:+76106982 | MS.gene049335:CDS |
| TTTGTGTAGGAAACTGACAT+AGG | 0.539813 | 3.1:+76105832 | MS.gene049335:intron |
| TTTGCAAAGCACAAAGGTGG+TGG | 0.542006 | 3.1:+76106970 | MS.gene049335:CDS |
| CATTCTGAGGAGCAGAGGTA+GGG | 0.542374 | 3.1:-76106578 | None:intergenic |
| ATTCTGAGGAGCAGAGGTAG+GGG | 0.547934 | 3.1:-76106577 | None:intergenic |
| GGTAGGGGCAGTAACTGGGG+GGG | 0.560913 | 3.1:-76106562 | None:intergenic |
| TTGTGTAGGAAACTGACATA+GGG | 0.564467 | 3.1:+76105833 | MS.gene049335:intron |
| GGCGTTATCCTGCGCAGCGA+CGG | 0.566982 | 3.1:-76105210 | None:intergenic |
| GTGAAGCAGAATCCACAAAG+AGG | 0.569929 | 3.1:+76106045 | MS.gene049335:CDS |
| TTTGGAGGTGGGTCTTTGCG+AGG | 0.573343 | 3.1:-76106528 | None:intergenic |
| ATGATTATGCCCATTTGGGG+TGG | 0.576734 | 3.1:-76106228 | None:intergenic |
| AGAGGGAAAAGCACTCTCAT+GGG | 0.577480 | 3.1:+76106063 | MS.gene049335:CDS |
| GAGGAGAAGAGACGGAATCG+TGG | 0.579304 | 3.1:+76105244 | MS.gene049335:CDS |
| ATTCAAAACCGTACATTCTG+AGG | 0.580864 | 3.1:-76106591 | None:intergenic |
| ACATTCTGAGGAGCAGAGGT+AGG | 0.580912 | 3.1:-76106579 | None:intergenic |
| AGCTTCGGAGGTGTTACGGT+CGG | 0.581005 | 3.1:-76106478 | None:intergenic |
| GAGCTAAAGAGGAGAAGAGA+CGG | 0.582096 | 3.1:+76105236 | MS.gene049335:CDS |
| CGATCTATATTACACACGGC+GGG | 0.584757 | 3.1:+76105152 | MS.gene049335:CDS |
| GAACGACAACCGCGCCGCGG+CGG | 0.588629 | 3.1:+76105386 | MS.gene049335:CDS |
| TCTTCTCCTCTTTAGCTCAC+CGG | 0.592478 | 3.1:-76105231 | None:intergenic |
| TCATCAAACAAACCACCGTA+AGG | 0.594373 | 3.1:-76105473 | None:intergenic |
| GATGAGGAGATAGATCCTTA+CGG | 0.597718 | 3.1:+76105458 | MS.gene049335:CDS |
| CCGCCGTGTGTAATATAGAT+CGG | 0.605511 | 3.1:-76105151 | None:intergenic |
| TAATTAAACAAAACCTGATG+AGG | 0.606618 | 3.1:-76105539 | None:intergenic |
| TACTTTGCAAAGCACAAAGG+TGG | 0.607829 | 3.1:+76106967 | MS.gene049335:CDS |
| AAACGAAGACGGTGAAGATG+AGG | 0.609578 | 3.1:+76105442 | MS.gene049335:CDS |
| GAAGAAGCTCCGCCGCGGCG+CGG | 0.611025 | 3.1:-76105395 | None:intergenic |
| CTGCGCAGCGACGGAGATCG+CGG | 0.611264 | 3.1:-76105201 | None:intergenic |
| CCGATTTGCCAGAATTGCGA+CGG | 0.612546 | 3.1:+76105299 | MS.gene049335:CDS |
| TGAAGCAGAATCCACAAAGA+GGG | 0.616018 | 3.1:+76106046 | MS.gene049335:CDS |
| CGGAAATCGTCCAAATCCAT+CGG | 0.620451 | 3.1:-76105131 | None:intergenic |
| GTGGTGGCAGTTCTCAAGGA+AGG | 0.622677 | 3.1:+76106986 | MS.gene049335:CDS |
| CCGTACATTCTGAGGAGCAG+AGG | 0.628754 | 3.1:-76106583 | None:intergenic |
| CTGATGATTATGCCCATTTG+GGG | 0.635715 | 3.1:-76106231 | None:intergenic |
| CAGTCTGAAGGAAACGAAGA+CGG | 0.636870 | 3.1:+76105431 | MS.gene049335:CDS |
| ATTTGCCAGAATTGCGACGG+AGG | 0.638773 | 3.1:+76105302 | MS.gene049335:CDS |
| GCGTCTCTACGCTGCCACCA+CGG | 0.639790 | 3.1:+76105268 | MS.gene049335:CDS |
| GGTTACTTTGCAAAGCACAA+AGG | 0.645193 | 3.1:+76106964 | MS.gene049335:CDS |
| AAGACCCACCTCCAAAACCA+AGG | 0.647167 | 3.1:+76106535 | MS.gene049335:CDS |
| GGAGTTGCTACAAAATCTGG+TGG | 0.648131 | 3.1:+76105674 | MS.gene049335:CDS |
| TGTAGGAAACTGACATAGGG+AGG | 0.652621 | 3.1:+76105836 | MS.gene049335:intron |
| CCGGAACGACAACCGCGCCG+CGG | 0.654440 | 3.1:+76105383 | MS.gene049335:CDS |
| GTCGCTGCGCAGGATAACGC+CGG | 0.655654 | 3.1:+76105212 | MS.gene049335:CDS |
| GCTTCAAGCGAACTACAAAG+AGG | 0.673966 | 3.1:+76106778 | MS.gene049335:CDS |
| TCTTCGTTTCCTTCAGACTG+CGG | 0.687107 | 3.1:-76105428 | None:intergenic |
| GAGGAGAAGAAGCTCCGCCG+CGG | 0.688012 | 3.1:-76105400 | None:intergenic |
| TTTCCGATCTATATTACACA+CGG | 0.691280 | 3.1:+76105148 | MS.gene049335:CDS |
| AATCGGAGTAACCTCCGTGG+TGG | 0.706021 | 3.1:-76105282 | None:intergenic |
| GAGGAGATAGATCCTTACGG+TGG | 0.724438 | 3.1:+76105461 | MS.gene049335:CDS |
| CCGATCTATATTACACACGG+CGG | 0.755687 | 3.1:+76105151 | MS.gene049335:CDS |
| GCAAATCGGAGTAACCTCCG+TGG | 0.764862 | 3.1:-76105285 | None:intergenic |
| TCTCTACGCTGCCACCACGG+AGG | 0.775314 | 3.1:+76105271 | MS.gene049335:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTCAATTTTTAATGT+TGG | + | chr3.1:76105760-76105779 | MS.gene049335:intron | 10.0% |
| !!! | AACAAATTTTCAACCATTAT+CGG | - | chr3.1:76106804-76106823 | None:intergenic | 20.0% |
| !!! | ATGGGTAATGTTAATATTTT+TGG | + | chr3.1:76106081-76106100 | MS.gene049335:intron | 20.0% |
| !!! | GATTTGTTTTTTATTTGTGT+AGG | + | chr3.1:76105819-76105838 | MS.gene049335:intron | 20.0% |
| !!! | TGGGTAATGTTAATATTTTT+GGG | + | chr3.1:76106082-76106101 | MS.gene049335:intron | 20.0% |
| !!! | TTTTTGTTAAAGTTTGTTGT+TGG | + | chr3.1:76106615-76106634 | MS.gene049335:intron | 20.0% |
| ! | AAAAAAGCAAAGAACAATTC+AGG | + | chr3.1:76106900-76106919 | MS.gene049335:CDS | 25.0% |
| ! | ACTTCACAAAATTAACACTA+GGG | - | chr3.1:76106664-76106683 | None:intergenic | 25.0% |
| ! | GTTAAAAAGTAGGAAGTTAA+AGG | + | chr3.1:76106120-76106139 | MS.gene049335:intron | 25.0% |
| ! | TAATTAAACAAAACCTGATG+AGG | - | chr3.1:76105542-76105561 | None:intergenic | 25.0% |
| ! | TTGTCAAAGAGTTAAAAAGT+AGG | + | chr3.1:76106110-76106129 | MS.gene049335:intron | 25.0% |
| !!! | GAAAGAAATTGTTGATGATT+GGG | + | chr3.1:76106023-76106042 | MS.gene049335:CDS | 25.0% |
| !!! | GTGAATTTTTGATTATGTGT+AGG | + | chr3.1:76105995-76106014 | MS.gene049335:intron | 25.0% |
| ATCAACCAAATGCAAACAAA+AGG | - | chr3.1:76106420-76106439 | None:intergenic | 30.0% | |
| ATTCGTGTGAAATTCGTTAA+TGG | + | chr3.1:76106152-76106171 | MS.gene049335:intron | 30.0% | |
| CAACAAGGTTAAAGGAATAT+TGG | - | chr3.1:76106394-76106413 | None:intergenic | 30.0% | |
| CACTTCACAAAATTAACACT+AGG | - | chr3.1:76106665-76106684 | None:intergenic | 30.0% | |
| CTTCACAAAATTAACACTAG+GGG | - | chr3.1:76106663-76106682 | None:intergenic | 30.0% | |
| TAAACAACACACGAAACTTT+AGG | - | chr3.1:76106876-76106895 | None:intergenic | 30.0% | |
| TATTACATTCCAAGAGTTGA+AGG | + | chr3.1:76105704-76105723 | MS.gene049335:CDS | 30.0% | |
| TTTCCGATCTATATTACACA+CGG | + | chr3.1:76105148-76105167 | MS.gene049335:CDS | 30.0% | |
| !! | GGAAAGAAATTGTTGATGAT+TGG | + | chr3.1:76106022-76106041 | MS.gene049335:CDS | 30.0% |
| !! | TTTTGATTATGTGTAGGAAG+TGG | + | chr3.1:76106001-76106020 | MS.gene049335:intron | 30.0% |
| !!! | AATGCTGTTTTTTGTAGCAT+TGG | + | chr3.1:76105964-76105983 | MS.gene049335:intron | 30.0% |
| !!! | ACTGATTTAGGTTTTGGTTT+TGG | - | chr3.1:76106507-76106526 | None:intergenic | 30.0% |
| AAGTAGGAAGTTAAAGGAGT+TGG | + | chr3.1:76106126-76106145 | MS.gene049335:intron | 35.0% | |
| AATCAATCACCTTCAACTCT+TGG | - | chr3.1:76105716-76105735 | None:intergenic | 35.0% | |
| ATTCAAAACCGTACATTCTG+AGG | - | chr3.1:76106594-76106613 | None:intergenic | 35.0% | |
| CCTAAGTCAAAAGCAAAGAA+TGG | + | chr3.1:76106943-76106962 | MS.gene049335:CDS | 35.0% | |
| GACTGTTCTCTTTCTTGATT+TGG | - | chr3.1:76105352-76105371 | None:intergenic | 35.0% | |
| TATTCAACATTTGCAGCTGA+TGG | + | chr3.1:76106185-76106204 | MS.gene049335:intron | 35.0% | |
| TCAGTCTGAAGATACTTTGA+TGG | + | chr3.1:76105653-76105672 | MS.gene049335:intron | 35.0% | |
| TTGTGTAGGAAACTGACATA+GGG | + | chr3.1:76105833-76105852 | MS.gene049335:intron | 35.0% | |
| TTTGTGTAGGAAACTGACAT+AGG | + | chr3.1:76105832-76105851 | MS.gene049335:intron | 35.0% | |
| !! | AAAGGCATCAACAAGGTTAA+AGG | - | chr3.1:76106402-76106421 | None:intergenic | 35.0% |
| !! | TGATGCCTTTTGTTTGCATT+TGG | + | chr3.1:76106412-76106431 | MS.gene049335:intron | 35.0% |
| !! | TTTTGTTTGCTGACACAGAT+GGG | + | chr3.1:76106445-76106464 | MS.gene049335:intron | 35.0% |
| !! | TTTTTGTTTGCTGACACAGA+TGG | + | chr3.1:76106444-76106463 | MS.gene049335:intron | 35.0% |
| !!! | CCATTCTTTGCTTTTGACTT+AGG | - | chr3.1:76106946-76106965 | None:intergenic | 35.0% |
| !!! | TTTTGGTTTTGGTTCAGCTT+CGG | - | chr3.1:76106496-76106515 | None:intergenic | 35.0% |
| AACTACAAAGAGGCCGATAA+TGG | + | chr3.1:76106788-76106807 | MS.gene049335:CDS | 40.0% | |
| AATCGACGAACATTGCTTGA+TGG | - | chr3.1:76105886-76105905 | None:intergenic | 40.0% | |
| ACCTGATGATTATGCCCATT+TGG | - | chr3.1:76106236-76106255 | None:intergenic | 40.0% | |
| ATCAAGCAATGTTCGTCGAT+TGG | + | chr3.1:76105885-76105904 | MS.gene049335:CDS | 40.0% | |
| CCTGATGATTATGCCCATTT+GGG | - | chr3.1:76106235-76106254 | None:intergenic | 40.0% | |
| CTATTCTCACTGTGTGGATT+TGG | - | chr3.1:76106362-76106381 | None:intergenic | 40.0% | |
| CTGATGATTATGCCCATTTG+GGG | - | chr3.1:76106234-76106253 | None:intergenic | 40.0% | |
| GATGAGGAGATAGATCCTTA+CGG | + | chr3.1:76105458-76105477 | MS.gene049335:CDS | 40.0% | |
| GATGGAGTTGCTACAAAATC+TGG | + | chr3.1:76105671-76105690 | MS.gene049335:CDS | 40.0% | |
| GCAAAGAACAATTCAGGTGA+TGG | + | chr3.1:76106906-76106925 | MS.gene049335:CDS | 40.0% | |
| TACTTTGCAAAGCACAAAGG+TGG | + | chr3.1:76106967-76106986 | MS.gene049335:CDS | 40.0% | |
| TCATCAAACAAACCACCGTA+AGG | - | chr3.1:76105476-76105495 | None:intergenic | 40.0% | |
| TCTCTGTCTCTGCAATCATT+CGG | - | chr3.1:76106705-76106724 | None:intergenic | 40.0% | |
| TGAAGCAGAATCCACAAAGA+GGG | + | chr3.1:76106046-76106065 | MS.gene049335:CDS | 40.0% | |
| ! | GGTTACTTTGCAAAGCACAA+AGG | + | chr3.1:76106964-76106983 | MS.gene049335:CDS | 40.0% |
| ! | TCTTTGCGAGGAACTGATTT+AGG | - | chr3.1:76106519-76106538 | None:intergenic | 40.0% |
| ! | TTTGGAGAGTACGCAAAATC+AGG | - | chr3.1:76106344-76106363 | None:intergenic | 40.0% |
| !! | AGAGCAATTTTGATGCAGAG+AGG | + | chr3.1:76106735-76106754 | MS.gene049335:CDS | 40.0% |
| !! | CGAGGAACTGATTTAGGTTT+TGG | - | chr3.1:76106513-76106532 | None:intergenic | 40.0% |
| !! | GCAAACAAAAGGCATCAACA+AGG | - | chr3.1:76106409-76106428 | None:intergenic | 40.0% |
| AAACGAAGACGGTGAAGATG+AGG | + | chr3.1:76105442-76105461 | MS.gene049335:CDS | 45.0% | |
| ATGATTATGCCCATTTGGGG+TGG | - | chr3.1:76106231-76106250 | None:intergenic | 45.0% | |
| CAGATGCTATTCTCACTGTG+TGG | - | chr3.1:76106368-76106387 | None:intergenic | 45.0% | |
| CAGTCTGAAGGAAACGAAGA+CGG | + | chr3.1:76105431-76105450 | MS.gene049335:CDS | 45.0% | |
| CCCAAATGGGCATAATCATC+AGG | + | chr3.1:76106232-76106251 | MS.gene049335:CDS | 45.0% | |
| CCGATCTATATTACACACGG+CGG | + | chr3.1:76105151-76105170 | MS.gene049335:CDS | 45.0% | |
| CCGCCGTGTGTAATATAGAT+CGG | - | chr3.1:76105154-76105173 | None:intergenic | 45.0% | |
| CGATCTATATTACACACGGC+GGG | + | chr3.1:76105152-76105171 | MS.gene049335:CDS | 45.0% | |
| GAGCTAAAGAGGAGAAGAGA+CGG | + | chr3.1:76105236-76105255 | MS.gene049335:CDS | 45.0% | |
| GCTTCAAGCGAACTACAAAG+AGG | + | chr3.1:76106778-76106797 | MS.gene049335:CDS | 45.0% | |
| GGAGTTGCTACAAAATCTGG+TGG | + | chr3.1:76105674-76105693 | MS.gene049335:CDS | 45.0% | |
| GTGAAGCAGAATCCACAAAG+AGG | + | chr3.1:76106045-76106064 | MS.gene049335:CDS | 45.0% | |
| TCTTCGTTTCCTTCAGACTG+CGG | - | chr3.1:76105431-76105450 | None:intergenic | 45.0% | |
| TGCAGAAAACCACCCCAAAT+GGG | + | chr3.1:76106219-76106238 | MS.gene049335:CDS | 45.0% | |
| TGTAGGAAACTGACATAGGG+AGG | + | chr3.1:76105836-76105855 | MS.gene049335:intron | 45.0% | |
| TTGCAGAAAACCACCCCAAA+TGG | + | chr3.1:76106218-76106237 | MS.gene049335:CDS | 45.0% | |
| TTTGCAAAGCACAAAGGTGG+TGG | + | chr3.1:76106970-76106989 | MS.gene049335:CDS | 45.0% | |
| ! | GCTTCTAGAAGATCCTCATC+AGG | + | chr3.1:76105526-76105545 | MS.gene049335:CDS | 45.0% |
| ! | TCTTCTCCTCTTTAGCTCAC+CGG | - | chr3.1:76105234-76105253 | None:intergenic | 45.0% |
| !! | AAGAGGGAAAAGCACTCTCA+TGG | + | chr3.1:76106062-76106081 | MS.gene049335:CDS | 45.0% |
| !! | AGAGGGAAAAGCACTCTCAT+GGG | + | chr3.1:76106063-76106082 | MS.gene049335:CDS | 45.0% |
| !! | AGAGTGCTTTTCCCTCTTTG+TGG | - | chr3.1:76106060-76106079 | None:intergenic | 45.0% |
| !! | TTTGGGGTGGTTTTCTGCAA+AGG | - | chr3.1:76106218-76106237 | None:intergenic | 45.0% |
| AAGACCCACCTCCAAAACCA+AGG | + | chr3.1:76106535-76106554 | MS.gene049335:CDS | 50.0% | |
| ATAACGCCGGTGAGCTAAAG+AGG | + | chr3.1:76105225-76105244 | MS.gene049335:CDS | 50.0% | |
| ATTTGCCAGAATTGCGACGG+AGG | + | chr3.1:76105302-76105321 | MS.gene049335:CDS | 50.0% | |
| CCGTCGCAATTCTGGCAAAT+CGG | - | chr3.1:76105302-76105321 | None:intergenic | 50.0% | |
| CCTCTGCTCCTCAGAATGTA+CGG | + | chr3.1:76106583-76106602 | MS.gene049335:intron | 50.0% | |
| GAACAGTCCTAGTCTGAGTC+CGG | + | chr3.1:76105364-76105383 | MS.gene049335:CDS | 50.0% | |
| GAGGAGATAGATCCTTACGG+TGG | + | chr3.1:76105461-76105480 | MS.gene049335:CDS | 50.0% | |
| ! | AAAGGTGGTGGCAGTTCTCA+AGG | + | chr3.1:76106982-76107001 | MS.gene049335:CDS | 50.0% |
| ! | ACATTCTGAGGAGCAGAGGT+AGG | - | chr3.1:76106582-76106601 | None:intergenic | 50.0% |
| ! | ATTCTGAGGAGCAGAGGTAG+GGG | - | chr3.1:76106580-76106599 | None:intergenic | 50.0% |
| ! | CATTCTGAGGAGCAGAGGTA+GGG | - | chr3.1:76106581-76106600 | None:intergenic | 50.0% |
| ! | CCGATTTGCCAGAATTGCGA+CGG | + | chr3.1:76105299-76105318 | MS.gene049335:CDS | 50.0% |
| !! | GGCTTGCTGCTGCAAGAAAA+CGG | + | chr3.1:76106756-76106775 | MS.gene049335:CDS | 50.0% |
| !! | GTTCAGCTTCGGAGGTGTTA+CGG | - | chr3.1:76106485-76106504 | None:intergenic | 50.0% |
| !!! | ATGGCCTTGGTTTTGGAGGT+GGG | - | chr3.1:76106542-76106561 | None:intergenic | 50.0% |
| !!! | TGGTTTTGGTTCAGCTTCGG+AGG | - | chr3.1:76106493-76106512 | None:intergenic | 50.0% |
| AATCGGAGTAACCTCCGTGG+TGG | - | chr3.1:76105285-76105304 | None:intergenic | 55.0% | |
| AGAGGTAGGGGCAGTAACTG+GGG | - | chr3.1:76106568-76106587 | None:intergenic | 55.0% | |
| CAGAGGTAGGGGCAGTAACT+GGG | - | chr3.1:76106569-76106588 | None:intergenic | 55.0% | |
| GAGGAGAAGAGACGGAATCG+TGG | + | chr3.1:76105244-76105263 | MS.gene049335:CDS | 55.0% | |
| GCAAATCGGAGTAACCTCCG+TGG | - | chr3.1:76105288-76105307 | None:intergenic | 55.0% | |
| GTGGTGGCAGTTCTCAAGGA+AGG | + | chr3.1:76106986-76107005 | MS.gene049335:CDS | 55.0% | |
| GTTCTCAAGGAAGGCAGCAC+TGG | + | chr3.1:76106995-76107014 | MS.gene049335:CDS | 55.0% | |
| GTTGACCTCCGTCGCAATTC+TGG | - | chr3.1:76105310-76105329 | None:intergenic | 55.0% | |
| TGTCGTTCCGGACTCAGACT+AGG | - | chr3.1:76105374-76105393 | None:intergenic | 55.0% | |
| TTTCCTTCAGACTGCGGCGT+CGG | - | chr3.1:76105425-76105444 | None:intergenic | 55.0% | |
| TTTGGAGGTGGGTCTTTGCG+AGG | - | chr3.1:76106531-76106550 | None:intergenic | 55.0% | |
| ! | CCGTACATTCTGAGGAGCAG+AGG | - | chr3.1:76106586-76106605 | None:intergenic | 55.0% |
| !! | AGCTTCGGAGGTGTTACGGT+CGG | - | chr3.1:76106481-76106500 | None:intergenic | 55.0% |
| !!! | GATGGCCTTGGTTTTGGAGG+TGG | - | chr3.1:76106543-76106562 | None:intergenic | 55.0% |
| AGGTAGGGGCAGTAACTGGG+GGG | - | chr3.1:76106566-76106585 | None:intergenic | 60.0% | |
| GAGGTAGGGGCAGTAACTGG+GGG | - | chr3.1:76106567-76106586 | None:intergenic | 60.0% | |
| GCAGAGGTAGGGGCAGTAAC+TGG | - | chr3.1:76106570-76106589 | None:intergenic | 60.0% | |
| GCTGACACAGATGGGAGCTC+TGG | + | chr3.1:76106453-76106472 | MS.gene049335:intron | 60.0% | |
| !!! | GGGGATGGCCTTGGTTTTGG+AGG | - | chr3.1:76106546-76106565 | None:intergenic | 60.0% |
| GAGGAGAAGAAGCTCCGCCG+CGG | - | chr3.1:76105403-76105422 | None:intergenic | 65.0% | |
| GCGTCTCTACGCTGCCACCA+CGG | + | chr3.1:76105268-76105287 | MS.gene049335:CDS | 65.0% | |
| GGCGTTATCCTGCGCAGCGA+CGG | - | chr3.1:76105213-76105232 | None:intergenic | 65.0% | |
| GGTAGGGGCAGTAACTGGGG+GGG | - | chr3.1:76106565-76106584 | None:intergenic | 65.0% | |
| GTAACTGGGGGGGATGGCCT+TGG | - | chr3.1:76106555-76106574 | None:intergenic | 65.0% | |
| GTCGCTGCGCAGGATAACGC+CGG | + | chr3.1:76105212-76105231 | MS.gene049335:CDS | 65.0% | |
| TCTCTACGCTGCCACCACGG+AGG | + | chr3.1:76105271-76105290 | MS.gene049335:CDS | 65.0% | |
| !! | GGGGGGGATGGCCTTGGTTT+TGG | - | chr3.1:76106549-76106568 | None:intergenic | 65.0% |
| CCTCCGACGCCGCAGTCTGA+AGG | + | chr3.1:76105419-76105438 | MS.gene049335:CDS | 70.0% | |
| CTGCGCAGCGACGGAGATCG+CGG | - | chr3.1:76105204-76105223 | None:intergenic | 70.0% | |
| GGGGCAGTAACTGGGGGGGA+TGG | - | chr3.1:76106561-76106580 | None:intergenic | 70.0% | |
| ! | CCTTCAGACTGCGGCGTCGG+AGG | - | chr3.1:76105422-76105441 | None:intergenic | 70.0% |
| !! | ACACGGCGGGCGTTGACGTC+TGG | + | chr3.1:76105165-76105184 | MS.gene049335:CDS | 70.0% |
| CCGCGGCGCGGTTGTCGTTC+CGG | - | chr3.1:76105386-76105405 | None:intergenic | 75.0% | |
| CCGGAACGACAACCGCGCCG+CGG | + | chr3.1:76105383-76105402 | MS.gene049335:CDS | 75.0% | |
| CGCGATCTCCGTCGCTGCGC+AGG | + | chr3.1:76105202-76105221 | MS.gene049335:CDS | 75.0% | |
| GAACGACAACCGCGCCGCGG+CGG | + | chr3.1:76105386-76105405 | MS.gene049335:CDS | 75.0% | |
| GAAGAAGCTCCGCCGCGGCG+CGG | - | chr3.1:76105398-76105417 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 76105134 | 76107020 | 76105134 | ID=MS.gene049335 |
| chr3.1 | mRNA | 76105134 | 76107020 | 76105134 | ID=MS.gene049335.t1;Parent=MS.gene049335 |
| chr3.1 | exon | 76105134 | 76105547 | 76105134 | ID=MS.gene049335.t1.exon1;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76105134 | 76105547 | 76105134 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76105657 | 76105725 | 76105657 | ID=MS.gene049335.t1.exon2;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76105657 | 76105725 | 76105657 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76105841 | 76105923 | 76105841 | ID=MS.gene049335.t1.exon3;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76105841 | 76105923 | 76105841 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106017 | 76106084 | 76106017 | ID=MS.gene049335.t1.exon4;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106017 | 76106084 | 76106017 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106201 | 76106253 | 76106201 | ID=MS.gene049335.t1.exon5;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106201 | 76106253 | 76106201 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106338 | 76106371 | 76106338 | ID=MS.gene049335.t1.exon6;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106338 | 76106371 | 76106338 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106463 | 76106599 | 76106463 | ID=MS.gene049335.t1.exon7;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106463 | 76106599 | 76106463 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106716 | 76106809 | 76106716 | ID=MS.gene049335.t1.exon8;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106716 | 76106809 | 76106716 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| chr3.1 | exon | 76106899 | 76107020 | 76106899 | ID=MS.gene049335.t1.exon9;Parent=MS.gene049335.t1 |
| chr3.1 | CDS | 76106899 | 76107020 | 76106899 | ID=cds.MS.gene049335.t1;Parent=MS.gene049335.t1 |
| Gene Sequence |
| Protein sequence |
