AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064687

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064687.t1 MTR_3g112150 94.580 572 30 1 1 571 1 572 0.0 1046
MS.gene064687.t1 MTR_1g022480 69.966 596 145 5 7 568 18 613 0.0 825
MS.gene064687.t1 MTR_1g022480 69.732 598 145 6 7 568 18 615 0.0 821
MS.gene064687.t1 MTR_1g022480 69.154 603 145 6 7 568 18 620 0.0 817
MS.gene064687.t1 MTR_1g022480 70.635 504 122 4 91 568 26 529 0.0 712
MS.gene064687.t1 MTR_3g117100 60.626 607 196 9 7 571 18 623 0.0 705
MS.gene064687.t1 MTR_4g070810 58.251 606 205 10 7 571 18 616 0.0 669
MS.gene064687.t1 MTR_5g021050 47.445 548 201 6 24 569 10 472 7.60e-173 498
MS.gene064687.t1 MTR_5g021050 47.445 548 201 6 24 569 10 472 7.96e-173 498
MS.gene064687.t1 MTR_4g070720 50.699 572 220 14 13 560 21 554 2.39e-171 498
MS.gene064687.t1 MTR_8g076880 49.308 578 210 13 18 560 13 542 1.65e-170 495
MS.gene064687.t1 MTR_3g117090 49.652 574 225 10 13 560 20 555 8.88e-164 478
MS.gene064687.t1 MTR_3g117090 49.374 559 219 10 13 545 20 540 9.77e-159 464
MS.gene064687.t1 MTR_7g056587 42.881 597 297 12 4 571 14 595 7.55e-151 447
MS.gene064687.t1 MTR_7g056587 42.881 597 297 12 4 571 28 609 1.17e-150 447
MS.gene064687.t1 MTR_7g056587 42.881 590 296 11 4 567 6 580 2.94e-149 442
MS.gene064687.t1 MTR_7g056587 42.881 590 296 11 4 567 14 588 3.78e-149 442
MS.gene064687.t1 MTR_3g010190 52.812 409 182 5 8 407 10 416 1.75e-134 402
MS.gene064687.t1 MTR_8g071000 42.583 573 288 12 30 568 33 598 1.65e-129 392
MS.gene064687.t1 MTR_6g015645 48.018 454 185 9 130 560 9 434 5.13e-127 380
MS.gene064687.t1 MTR_7g056587 43.388 484 237 9 111 571 1 470 3.27e-124 374
MS.gene064687.t1 MTR_4g070790 58.974 273 105 1 64 329 48 320 2.60e-118 356
MS.gene064687.t1 MTR_5g012460 53.763 279 129 0 52 330 74 352 2.20e-109 335
MS.gene064687.t1 MTR_4g070730 48.883 358 134 7 47 398 23 337 1.21e-103 318
MS.gene064687.t1 MTR_4g070780 50.602 332 132 5 46 377 16 315 3.74e-103 317
MS.gene064687.t1 MTR_6g034285 56.190 105 46 0 129 233 195 299 5.03e-33 130
MS.gene064687.t1 MTR_3g098530 31.364 220 132 6 90 308 66 267 2.35e-21 94.7
MS.gene064687.t1 MTR_8g096180 31.250 224 135 6 86 308 42 247 1.33e-18 86.3
MS.gene064687.t1 MTR_3g060670 28.112 249 158 7 59 300 1 235 3.01e-18 87.0
MS.gene064687.t1 MTR_8g096180 31.441 229 138 7 86 308 42 257 4.41e-18 84.7
MS.gene064687.t1 MTR_1g032580 30.275 218 133 8 94 308 32 233 2.52e-16 79.3
MS.gene064687.t1 MTR_2g027140 28.638 213 136 5 94 300 39 241 4.00e-16 80.1
MS.gene064687.t1 MTR_7g070480 27.273 220 136 8 93 303 100 304 4.09e-14 75.1
MS.gene064687.t1 MTR_8g095360 28.507 221 133 8 93 303 181 386 2.17e-12 70.1
MS.gene064687.t1 MTR_4g013300 29.148 223 129 8 93 303 125 330 4.28e-12 68.9
MS.gene064687.t1 MTR_1g032580 29.000 200 120 8 115 308 2 185 8.51e-12 65.1
MS.gene064687.t1 MTR_3g097350 27.155 232 144 8 84 303 238 456 6.02e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064687.t1 AT2G21520 59.344 610 201 8 3 568 18 624 0.0 697
MS.gene064687.t1 AT2G21520 59.344 610 201 8 3 568 18 624 0.0 697
MS.gene064687.t1 AT2G21520 59.344 610 201 8 3 568 14 620 0.0 697
MS.gene064687.t1 AT4G39170 61.356 590 200 7 3 566 14 601 0.0 693
MS.gene064687.t1 AT4G39170 61.186 590 199 8 3 566 14 599 0.0 686
MS.gene064687.t1 AT1G75370 57.333 600 214 11 8 571 19 612 0.0 595
MS.gene064687.t1 AT1G19650 55.333 600 225 10 8 571 16 608 0.0 592
MS.gene064687.t1 AT1G75370 56.882 603 215 11 8 571 19 615 0.0 589
MS.gene064687.t1 AT1G19650 56.836 512 187 8 90 571 29 536 0.0 537
MS.gene064687.t1 AT2G21540 50.817 551 237 7 13 560 18 537 2.08e-180 520
MS.gene064687.t1 AT2G21540 50.817 551 237 7 13 560 18 537 2.08e-180 520
MS.gene064687.t1 AT2G21540 50.817 551 237 7 13 560 18 537 2.08e-180 520
MS.gene064687.t1 AT2G21540 50.817 551 237 7 13 560 18 537 2.08e-180 520
MS.gene064687.t1 AT4G34580 51.332 563 227 12 14 560 11 542 4.11e-180 520
MS.gene064687.t1 AT4G34580 51.332 563 227 12 14 560 11 542 4.11e-180 520
MS.gene064687.t1 AT4G36490 51.268 552 224 11 22 560 12 531 4.63e-180 519
MS.gene064687.t1 AT2G21540 50.455 549 236 8 13 560 18 531 5.39e-180 519
MS.gene064687.t1 AT2G21540 50.455 549 236 8 13 560 18 531 5.39e-180 519
MS.gene064687.t1 AT2G18180 49.735 567 207 12 23 560 17 534 1.34e-177 513
MS.gene064687.t1 AT2G18180 49.735 567 207 12 23 560 17 534 2.53e-177 513
MS.gene064687.t1 AT4G39180 49.474 570 221 13 13 560 18 542 1.32e-173 503
MS.gene064687.t1 AT4G39180 48.611 576 216 13 13 560 18 541 4.66e-173 501
MS.gene064687.t1 AT4G39180 48.611 576 216 13 13 560 18 541 4.66e-173 501
MS.gene064687.t1 AT1G19650 64.141 396 132 4 8 397 16 407 7.45e-169 487
MS.gene064687.t1 AT3G24840 45.641 585 253 11 13 571 23 568 3.33e-161 472
MS.gene064687.t1 AT3G24840 45.641 585 253 11 13 571 23 568 3.33e-161 472
MS.gene064687.t1 AT3G24840 45.641 585 253 11 13 571 23 568 3.33e-161 472
MS.gene064687.t1 AT3G24840 45.641 585 253 11 13 571 23 568 3.33e-161 472
MS.gene064687.t1 AT3G24840 45.377 584 257 10 13 571 23 569 3.91e-161 472
MS.gene064687.t1 AT3G24840 45.377 584 257 10 13 571 23 569 3.91e-161 472
MS.gene064687.t1 AT3G24840 45.377 584 257 10 13 571 23 569 3.91e-161 472
MS.gene064687.t1 AT2G16380 46.564 582 234 13 13 566 9 541 1.45e-159 467
MS.gene064687.t1 AT2G16380 46.564 582 234 13 13 566 9 541 1.45e-159 467
MS.gene064687.t1 AT2G18180 49.595 494 181 10 94 560 11 463 1.32e-156 457
MS.gene064687.t1 AT2G18180 49.595 494 181 10 94 560 11 463 2.52e-156 456
MS.gene064687.t1 AT2G18180 49.057 477 175 10 111 560 1 436 4.62e-148 434
MS.gene064687.t1 AT1G55690 42.333 600 288 11 2 555 18 605 1.01e-136 411
MS.gene064687.t1 AT1G55690 42.333 600 288 11 2 555 18 605 1.62e-136 410
MS.gene064687.t1 AT1G55690 42.333 600 288 11 2 555 18 605 1.62e-136 410
MS.gene064687.t1 AT1G55690 42.333 600 288 11 2 555 18 605 1.62e-136 410
MS.gene064687.t1 AT1G55690 42.333 600 288 11 2 555 18 605 1.62e-136 410
MS.gene064687.t1 AT5G56160 39.555 584 300 9 16 571 19 577 3.50e-131 395
MS.gene064687.t1 AT5G56160 39.555 584 300 9 16 571 19 577 3.50e-131 395
MS.gene064687.t1 AT2G16380 46.025 478 194 10 111 566 1 436 7.81e-129 384
MS.gene064687.t1 AT5G56160 54.518 332 142 3 16 343 19 345 1.37e-125 378
MS.gene064687.t1 AT5G47510 55.469 256 114 0 71 326 29 284 1.04e-106 324
MS.gene064687.t1 AT5G47510 55.469 256 114 0 71 326 28 283 1.86e-106 325
MS.gene064687.t1 AT5G47510 55.469 256 114 0 71 326 29 284 1.96e-106 325
MS.gene064687.t1 AT5G47510 55.752 226 100 0 101 326 2 227 4.11e-96 296
MS.gene064687.t1 AT5G47730 28.333 240 157 5 70 300 8 241 6.06e-19 89.0
MS.gene064687.t1 AT5G47730 28.333 240 157 5 70 300 8 241 6.06e-19 89.0
MS.gene064687.t1 AT1G55840 28.322 286 171 10 57 323 1 271 6.54e-18 85.5
MS.gene064687.t1 AT1G55840 29.365 252 155 8 86 323 2 244 1.42e-17 84.0
MS.gene064687.t1 AT1G01630 29.680 219 131 7 93 308 52 250 2.79e-16 79.3
MS.gene064687.t1 AT1G72160 22.651 415 271 13 1 394 72 457 1.14e-14 77.0
MS.gene064687.t1 AT5G47730 27.604 192 131 3 111 300 1 186 6.32e-14 73.2
MS.gene064687.t1 AT5G47730 27.604 192 131 3 111 300 1 186 6.32e-14 73.2
MS.gene064687.t1 AT4G09160 23.464 358 232 13 33 366 249 588 7.89e-12 68.6
MS.gene064687.t1 AT4G09160 23.464 358 232 13 33 366 249 588 8.68e-12 68.6
MS.gene064687.t1 AT4G09160 23.464 358 232 13 33 366 274 613 1.14e-11 68.2
MS.gene064687.t1 AT4G36640 29.018 224 132 10 94 311 44 246 4.75e-11 64.3
MS.gene064687.t1 AT4G36640 29.018 224 132 10 94 311 44 246 4.75e-11 64.3

Find 120 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTATCACTTGCCTCTTCT+TGG 0.202570 3.4:+97132156 None:intergenic
ATGAATCTTTGAAGTAGTTT+TGG 0.227191 3.4:+97132938 None:intergenic
AGGTTCCAGCACAACAATTT+TGG 0.228844 3.4:-97133653 MS.gene064687:CDS
TGAATGTTCCATTAGGTTCT+TGG 0.246980 3.4:-97132809 MS.gene064687:intron
GGAAAACCTTTAAAATGTTT+TGG 0.274087 3.4:+97132571 None:intergenic
GTCTTGCCATGGCCCTTTAT+CGG 0.290544 3.4:+97132593 None:intergenic
TTGTTCGAACAAAGGCAAAA+AGG 0.292384 3.4:+97131754 None:intergenic
GGGGTTTGGCTTTGTGAATC+TGG 0.297857 3.4:+97131686 None:intergenic
TAAATGCATCATGCAAATTA+AGG 0.298711 3.4:-97134515 MS.gene064687:CDS
AACCATGTGGATAGTACTTC+TGG 0.304122 3.4:+97133854 None:intergenic
CATAGAATTCCCACATGCTT+TGG 0.329438 3.4:+97132199 None:intergenic
AATGAGACAAGAAGAACTTT+TGG 0.329773 3.4:-97131331 MS.gene064687:CDS
GGCTGTATGACATCCGATAA+AGG 0.337655 3.4:-97132606 MS.gene064687:CDS
CAACTACCGCCTAGAAATTC+TGG 0.341995 3.4:+97132648 None:intergenic
CTTGGACATGAGTCAGTATA+GGG 0.349834 3.4:+97132174 None:intergenic
GATGATAAGTGGAAAAGAAT+TGG 0.351511 3.4:-97134558 MS.gene064687:CDS
AGTTACTTGCATAAGCCTAT+TGG 0.352097 3.4:+97133771 None:intergenic
GTGTGACAAAGGGAGTAAAA+AGG 0.353499 3.4:-97131722 MS.gene064687:CDS
GTTACTTGCATAAGCCTATT+GGG 0.369599 3.4:+97133772 None:intergenic
GGATGCAGAAAATCTGCTTT+TGG 0.376361 3.4:-97131811 MS.gene064687:intron
AGTGAGCTACCAGAATTTCT+AGG 0.380292 3.4:-97132657 MS.gene064687:CDS
TACCATAGTCTTTCCTCCAT+TGG 0.380545 3.4:+97134033 None:intergenic
GGTGCTGCTTGCTTCTCCTT+TGG 0.389658 3.4:+97131965 None:intergenic
CCTAGCCTCTCAATATAAAC+AGG 0.390737 3.4:+97133805 None:intergenic
ATAGAATTCCCACATGCTTT+GGG 0.391941 3.4:+97132200 None:intergenic
TCTTGGACATGAGTCAGTAT+AGG 0.395958 3.4:+97132173 None:intergenic
AGCAGCTCCTCTTTCTCACT+TGG 0.399254 3.4:+97131585 None:intergenic
CGAAACTCATTTGGCTCAAA+AGG 0.401215 3.4:-97131941 MS.gene064687:intron
GTAGAAGATGAGGAGGGGTT+TGG 0.414982 3.4:+97131672 None:intergenic
CTAGGCAAGATTTGTTGATA+AGG 0.428115 3.4:-97132059 MS.gene064687:intron
GCAAGATTTGTTGATAAGGT+TGG 0.435405 3.4:-97132055 MS.gene064687:CDS
CTCCTCTTTCTCACTTGGCA+TGG 0.452012 3.4:+97131590 None:intergenic
AAGCTCACTGAGGCGTTTCA+AGG 0.453754 3.4:+97131650 None:intergenic
AAAAGTGGCTATACATCTAC+TGG 0.454005 3.4:-97132257 MS.gene064687:CDS
TACTATCCACATGGTTATCA+TGG 0.455469 3.4:-97133847 MS.gene064687:CDS
AACATCCAAAATTGTTGTGC+TGG 0.460482 3.4:+97133648 None:intergenic
GCAGCACCACGAAACTCATT+TGG 0.462925 3.4:-97131950 MS.gene064687:CDS
TTTATCATCAATGCTGGTCC+TGG 0.464243 3.4:-97133002 MS.gene064687:CDS
ATCCAATGGAGGAAAGACTA+TGG 0.472951 3.4:-97134035 MS.gene064687:CDS
TTTGAGCCAAATGAGTTTCG+TGG 0.473382 3.4:+97131944 None:intergenic
GTTGATAAGGTTGGTCATAC+CGG 0.475173 3.4:-97132046 MS.gene064687:CDS
GGTAACCAGGACTGTTACAG+TGG 0.476374 3.4:-97131790 MS.gene064687:CDS
GTCGAACATCCTCAATGGAC+AGG 0.479812 3.4:+97134439 None:intergenic
ATGACTATCATATGTTATTG+AGG 0.481600 3.4:-97134341 MS.gene064687:intron
TTGAGAAAGCAAAGCTTATG+TGG 0.482104 3.4:-97134067 MS.gene064687:CDS
GCTGTATGACATCCGATAAA+GGG 0.483951 3.4:-97132605 MS.gene064687:CDS
GATGAGTTCTCGAGCAGACT+TGG 0.484272 3.4:+97133363 None:intergenic
TCGTAACAATTTCCAACGAC+GGG 0.488552 3.4:-97132412 MS.gene064687:CDS
AGAGTTCAGAGGATGATAAG+TGG 0.489773 3.4:-97134569 MS.gene064687:CDS
ATCAATAATCTTGTCAACCA+TGG 0.500918 3.4:+97131994 None:intergenic
TAGGAAAAGTTGATCCCAAT+AGG 0.504043 3.4:-97133786 MS.gene064687:CDS
TGCCATGCCAAGTGAGAAAG+AGG 0.504746 3.4:-97131592 MS.gene064687:CDS
GTTGACAAGATTATTGATGT+TGG 0.506685 3.4:-97131989 MS.gene064687:CDS
TTTCCTCCATTGGATCATGT+TGG 0.513399 3.4:+97134043 None:intergenic
TGATAGTCATCATGTATTGA+AGG 0.523730 3.4:+97134354 None:intergenic
AACTTGTCGAACATCCTCAA+TGG 0.528444 3.4:+97134434 None:intergenic
CCTGTTTATATTGAGAGGCT+AGG 0.536718 3.4:-97133805 MS.gene064687:CDS
GTTGTAGATTCTTGAAAGCA+AGG 0.537683 3.4:-97134100 MS.gene064687:intron
CAAATGTTTATCATCAATGC+TGG 0.541743 3.4:-97133008 MS.gene064687:CDS
ATATTTGAGATACCACGTGC+AGG 0.550213 3.4:-97133737 MS.gene064687:CDS
TGTCTGTAAAGCAGTGCTGC+TGG 0.554769 3.4:-97131174 MS.gene064687:intron
TGGTACAGATACAATTATAG+AGG 0.554834 3.4:-97134015 MS.gene064687:intron
TGAGGATGTTCGACAAGTTG+AGG 0.556408 3.4:-97134430 MS.gene064687:CDS
TGGTTATCATGGTGTGGACA+AGG 0.560676 3.4:-97133836 MS.gene064687:CDS
TAACAATTTCCAACGACGGG+GGG 0.562654 3.4:-97132409 MS.gene064687:CDS
TATTTGAGATACCACGTGCA+GGG 0.563935 3.4:-97133736 MS.gene064687:CDS
ATAGCATTTCGTGTGACAAA+GGG 0.564103 3.4:-97131732 MS.gene064687:CDS
AATAGCATTTCGTGTGACAA+AGG 0.565114 3.4:-97131733 MS.gene064687:CDS
TCAATAATCTTGTCAACCAT+GGG 0.565693 3.4:+97131995 None:intergenic
GATTATTGATGTTGGACCAA+AGG 0.573610 3.4:-97131981 MS.gene064687:CDS
ATTCCCACATGCTTTGGGAG+AGG 0.576118 3.4:+97132205 None:intergenic
TTTGGCATACATAGACAGTC+GGG 0.579008 3.4:-97131313 MS.gene064687:CDS
AGAGCTCATTGCTACAAAGA+AGG 0.579053 3.4:-97131526 MS.gene064687:intron
GCAGCAAAAGTAGTGGCAGT+AGG 0.581849 3.4:-97134470 MS.gene064687:CDS
GGAACATATTCATCATACTC+AGG 0.584478 3.4:+97132016 None:intergenic
GAAGACCTGTTTATATTGAG+AGG 0.585453 3.4:-97133810 MS.gene064687:CDS
GCGTTTCAAGGTAGAAGATG+AGG 0.585982 3.4:+97131662 None:intergenic
GTATCTCAAATATCTTTCCA+TGG 0.587541 3.4:+97133747 None:intergenic
ATCACCTCTCCCAAAGCATG+TGG 0.587564 3.4:-97132209 MS.gene064687:CDS
AACAATTTCCAACGACGGGG+GGG 0.590029 3.4:-97132408 MS.gene064687:CDS
GATGCCCACTGTAACAGTCC+TGG 0.590148 3.4:+97131785 None:intergenic
AAATGCTATTGTTCGAACAA+AGG 0.593799 3.4:+97131746 None:intergenic
TGCATGCAGATGGTTCTTAG+TGG 0.596223 3.4:-97132458 MS.gene064687:intron
TGTGGGCCAACATGATCCAA+TGG 0.599513 3.4:-97134049 MS.gene064687:CDS
GAGCAATTCCCTGTCCATTG+AGG 0.600815 3.4:-97134448 MS.gene064687:CDS
TACTTGAGATTATCGATGCG+AGG 0.602427 3.4:-97132766 MS.gene064687:intron
ACTGACTCATGTCCAAGAAG+AGG 0.602573 3.4:-97132168 MS.gene064687:intron
AGTTTATCGTGTGGATGCAT+TGG 0.603746 3.4:-97131553 MS.gene064687:CDS
ATCGTAACAATTTCCAACGA+CGG 0.608081 3.4:-97132413 MS.gene064687:CDS
TCCTAAACAGGCTTTGTACG+AGG 0.609326 3.4:-97131358 MS.gene064687:intron
GATAAGGTTGGTCATACCGG+TGG 0.614668 3.4:-97132043 MS.gene064687:CDS
TGACATCCGATAAAGGGCCA+TGG 0.616150 3.4:-97132599 MS.gene064687:CDS
TTCAAGGTAGAAGATGAGGA+GGG 0.616304 3.4:+97131666 None:intergenic
TCAAGGTAGAAGATGAGGAG+GGG 0.617122 3.4:+97131667 None:intergenic
AAAAGAAGCAGCAAAAGTAG+TGG 0.618855 3.4:-97134477 MS.gene064687:CDS
TCCACATGGTTATCATGGTG+TGG 0.619712 3.4:-97133842 MS.gene064687:CDS
TCGAACATCCTCAATGGACA+GGG 0.623693 3.4:+97134440 None:intergenic
TTAGCAGCTATAGAGCAAGC+TGG 0.628886 3.4:+97133685 None:intergenic
ATCATACTCAGGAAAACCAC+CGG 0.629075 3.4:+97132027 None:intergenic
TGAAAGAAGAGAGAGTTCAG+AGG 0.630165 3.4:-97134580 MS.gene064687:CDS
TTTCAAGGTAGAAGATGAGG+AGG 0.637871 3.4:+97131665 None:intergenic
TGAGAAAGCAAAGCTTATGT+GGG 0.641603 3.4:-97134066 MS.gene064687:CDS
GTAACAATTTCCAACGACGG+GGG 0.643422 3.4:-97132410 MS.gene064687:CDS
ATAGCTGCTAAGAGACACAT+AGG 0.643444 3.4:-97133673 MS.gene064687:CDS
TTCCATAGAAGCTTAAAACC+AGG 0.645111 3.4:+97132984 None:intergenic
GCTTATGCAAGTAACTACCA+TGG 0.650661 3.4:-97133764 MS.gene064687:CDS
TATCATGGTGTGGACAAGGA+GGG 0.652614 3.4:-97133832 MS.gene064687:CDS
TAATCTCAAGTAATTTACTG+TGG 0.654334 3.4:+97132777 None:intergenic
GTATGATGAATATGTTCCCA+TGG 0.657630 3.4:-97132011 MS.gene064687:CDS
CGTAACAATTTCCAACGACG+GGG 0.667892 3.4:-97132411 MS.gene064687:CDS
GTAACCAGGACTGTTACAGT+GGG 0.670798 3.4:-97131789 MS.gene064687:CDS
TGCACCTGTGTAGATCATGA+TGG 0.672539 3.4:-97132627 MS.gene064687:CDS
GTCCAGAAGTACTATCCACA+TGG 0.674124 3.4:-97133856 MS.gene064687:CDS
TCACCTCTCCCAAAGCATGT+GGG 0.674728 3.4:-97132208 MS.gene064687:CDS
TTATCATGGTGTGGACAAGG+AGG 0.685438 3.4:-97133833 MS.gene064687:CDS
GAATGCTGCAGTTTATCGTG+TGG 0.686694 3.4:-97131562 MS.gene064687:CDS
GGGCCAACATGATCCAATGG+AGG 0.693515 3.4:-97134046 MS.gene064687:CDS
ACAGCCATCATGATCTACAC+AGG 0.695056 3.4:+97132623 None:intergenic
TCCACACCATGATAACCATG+TGG 0.713264 3.4:+97133841 None:intergenic
GAGCTACCAGAATTTCTAGG+CGG 0.787653 3.4:-97132654 MS.gene064687:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTAATTTTAAATTAATT+AGG - chr3.4:97132479-97132498 MS.gene064687:intron 0.0%
!!! TAATTAATTTAAAATTAATA+TGG + chr3.4:97132480-97132499 None:intergenic 0.0%
!!! AATTAATTGAAAAATTGTTT+TGG - chr3.4:97131657-97131676 MS.gene064687:CDS 10.0%
!!! AATTTTTCAATTAATTTTCA+TGG + chr3.4:97131653-97131672 None:intergenic 10.0%
!! AAAAGAATAAAAAGTAACAA+AGG + chr3.4:97131206-97131225 None:intergenic 15.0%
!!! ACTCTTTTTTTTTTCATATT+TGG - chr3.4:97131985-97132004 MS.gene064687:CDS 15.0%
!!! TTATTCTTTTTCATGAATTT+AGG - chr3.4:97131216-97131235 MS.gene064687:intron 15.0%
!! ATCCTATGATTAATAATAAG+TGG + chr3.4:97133377-97133396 None:intergenic 20.0%
!! TATTTCAGGAAAATACATAA+GGG + chr3.4:97133080-97133099 None:intergenic 20.0%
!! TTATTTCAGGAAAATACATA+AGG + chr3.4:97133081-97133100 None:intergenic 20.0%
!! TTCCACTTATTATTAATCAT+AGG - chr3.4:97133372-97133391 MS.gene064687:CDS 20.0%
!! TTTCAATTCATCATTATTTC+AGG + chr3.4:97133094-97133113 None:intergenic 20.0%
!!! AGCATTTGATTTATATAAAC+TGG + chr3.4:97134680-97134699 None:intergenic 20.0%
!!! ATTTTTATAAGATTCCATTG+AGG - chr3.4:97133048-97133067 MS.gene064687:intron 20.0%
!!! TATTTAGGTTCCATTTATAT+TGG - chr3.4:97134035-97134054 MS.gene064687:CDS 20.0%
!!! TTAAGAACTTCTTTAACTTT+AGG - chr3.4:97134481-97134500 MS.gene064687:CDS 20.0%
! AGAATAAAAAGTAACAAAGG+AGG + chr3.4:97131203-97131222 None:intergenic 25.0%
! ATAGGTTTATACTACAGATT+AGG - chr3.4:97134011-97134030 MS.gene064687:intron 25.0%
! ATGACTATCATATGTTATTG+AGG - chr3.4:97131583-97131602 MS.gene064687:CDS 25.0%
! ATTAAAGAATCTTTATGGCA+TGG - chr3.4:97134092-97134111 MS.gene064687:CDS 25.0%
! CAGTCATTAAAGAATCTTTA+TGG - chr3.4:97134087-97134106 MS.gene064687:CDS 25.0%
! GTGATAGTACATTAATTACA+AGG - chr3.4:97133782-97133801 MS.gene064687:CDS 25.0%
! TAAATGCATCATGCAAATTA+AGG - chr3.4:97131409-97131428 MS.gene064687:intron 25.0%
! TAATCTCAAGTAATTTACTG+TGG + chr3.4:97133150-97133169 None:intergenic 25.0%
! TACTACAGATTAGGATATTT+AGG - chr3.4:97134020-97134039 MS.gene064687:CDS 25.0%
! TATCTTATTCTACATACTTC+AGG + chr3.4:97132620-97132639 None:intergenic 25.0%
! TCAGTTACATATCTTAAATG+AGG + chr3.4:97132877-97132896 None:intergenic 25.0%
! TGTTTGACATCCAATATAAA+TGG + chr3.4:97134048-97134067 None:intergenic 25.0%
! TTAGAGCTTCAATTAAATCA+TGG + chr3.4:97132373-97132392 None:intergenic 25.0%
! TTGAAATTGAATGTTCCATT+AGG - chr3.4:97133108-97133127 MS.gene064687:intron 25.0%
!! TGATAAAACATCTTTTCCAA+AGG - chr3.4:97133549-97133568 MS.gene064687:intron 25.0%
!! TGCTATAATCCTTTGAATTT+TGG - chr3.4:97133628-97133647 MS.gene064687:intron 25.0%
!!! ATGAATCTTTGAAGTAGTTT+TGG + chr3.4:97132989-97133008 None:intergenic 25.0%
!!! GGAAAACCTTTAAAATGTTT+TGG + chr3.4:97133356-97133375 None:intergenic 25.0%
!!! TACTATGGTTTTTTCTCTAT+AGG - chr3.4:97132019-97132038 MS.gene064687:CDS 25.0%
!!! TCTATAGGATTTTGATTTCA+AGG - chr3.4:97132034-97132053 MS.gene064687:CDS 25.0%
!!! TGAATCTTTGAAGTAGTTTT+GGG + chr3.4:97132988-97133007 None:intergenic 25.0%
AAATGCTATTGTTCGAACAA+AGG + chr3.4:97134181-97134200 None:intergenic 30.0%
ACATAGCAAGTAAAGCATAA+TGG + chr3.4:97131616-97131635 None:intergenic 30.0%
ACTCAGTAACCAAAATTCAA+AGG + chr3.4:97133640-97133659 None:intergenic 30.0%
ATAAAAATTCCCATGACAGA+TGG + chr3.4:97134715-97134734 None:intergenic 30.0%
ATCAATAATCTTGTCAACCA+TGG + chr3.4:97133933-97133952 None:intergenic 30.0%
ATGAATATGCAAAGAGATCT+AGG + chr3.4:97131753-97131772 None:intergenic 30.0%
ATTCATACTACATCTTAACC+TGG - chr3.4:97133395-97133414 MS.gene064687:intron 30.0%
CAAATGTTTATCATCAATGC+TGG - chr3.4:97132916-97132935 MS.gene064687:intron 30.0%
GAAATGAAAAACTGTACCTT+TGG + chr3.4:97133568-97133587 None:intergenic 30.0%
GATGATAAGTGGAAAAGAAT+TGG - chr3.4:97131366-97131385 MS.gene064687:intron 30.0%
GTATCTCAAATATCTTTCCA+TGG + chr3.4:97132180-97132199 None:intergenic 30.0%
GTATGATATTGCATATTGAC+TGG - chr3.4:97131774-97131793 MS.gene064687:CDS 30.0%
GTTGACAAGATTATTGATGT+TGG - chr3.4:97133935-97133954 MS.gene064687:intron 30.0%
TCAAGGTAAGTCAAAAGTTA+AGG - chr3.4:97134646-97134665 MS.gene064687:intron 30.0%
TCAATAATCTTGTCAACCAT+GGG + chr3.4:97133932-97133951 None:intergenic 30.0%
TGATAGTCATCATGTATTGA+AGG + chr3.4:97131573-97131592 None:intergenic 30.0%
TGGTACAGATACAATTATAG+AGG - chr3.4:97131909-97131928 MS.gene064687:intron 30.0%
TTGAAACCCTATAAAGCAAA+GGG + chr3.4:97132533-97132552 None:intergenic 30.0%
! AATGAGACAAGAAGAACTTT+TGG - chr3.4:97134593-97134612 MS.gene064687:CDS 30.0%
! ACAACAATTTTGGATGTTCA+AGG - chr3.4:97132281-97132300 MS.gene064687:intron 30.0%
! GAAACACTACTGATTATAGT+AGG - chr3.4:97131315-97131334 MS.gene064687:CDS 30.0%
! GCAAGACCAAAACATTTTAA+AGG - chr3.4:97133347-97133366 MS.gene064687:CDS 30.0%
! TTAGACATAGTTCCTTGTTT+AGG + chr3.4:97132808-97132827 None:intergenic 30.0%
! TTGGTGTTCATACTATACTA+TGG - chr3.4:97132004-97132023 MS.gene064687:CDS 30.0%
! TTTGAAACCCTATAAAGCAA+AGG + chr3.4:97132534-97132553 None:intergenic 30.0%
!! TCAACATTTGGTTCTGTTAT+TGG - chr3.4:97133185-97133204 MS.gene064687:intron 30.0%
!!! AACTGTTTTTATACTCGTCT+AGG - chr3.4:97133847-97133866 MS.gene064687:CDS 30.0%
AAAAGAAGCAGCAAAAGTAG+TGG - chr3.4:97131447-97131466 MS.gene064687:intron 35.0%
AAAAGTGGCTATACATCTAC+TGG - chr3.4:97133667-97133686 MS.gene064687:CDS 35.0%
AACATCCAAAATTGTTGTGC+TGG + chr3.4:97132279-97132298 None:intergenic 35.0%
AATAGCATTTCGTGTGACAA+AGG - chr3.4:97134191-97134210 MS.gene064687:intron 35.0%
ACTTGTTTCCAAGAACCTAA+TGG + chr3.4:97133126-97133145 None:intergenic 35.0%
AGAAGTTCTTAACAATGACG+TGG + chr3.4:97134473-97134492 None:intergenic 35.0%
AGTTACTTGCATAAGCCTAT+TGG + chr3.4:97132156-97132175 None:intergenic 35.0%
ATAGAATTCCCACATGCTTT+GGG + chr3.4:97133727-97133746 None:intergenic 35.0%
ATAGCATTTCGTGTGACAAA+GGG - chr3.4:97134192-97134211 MS.gene064687:intron 35.0%
ATCGTAACAATTTCCAACGA+CGG - chr3.4:97133511-97133530 MS.gene064687:intron 35.0%
CTTCTTCCCTTTGCTTTATA+GGG - chr3.4:97132524-97132543 MS.gene064687:intron 35.0%
GAAGACCTGTTTATATTGAG+AGG - chr3.4:97132114-97132133 MS.gene064687:intron 35.0%
GATTATTGATGTTGGACCAA+AGG - chr3.4:97133943-97133962 MS.gene064687:intron 35.0%
GCATGTTCAATTTCCTAAAC+AGG - chr3.4:97134554-97134573 MS.gene064687:CDS 35.0%
GCTTATGAGAACTTATCTAC+TGG + chr3.4:97131717-97131736 None:intergenic 35.0%
GGAACATATTCATCATACTC+AGG + chr3.4:97133911-97133930 None:intergenic 35.0%
GTATGATGAATATGTTCCCA+TGG - chr3.4:97133913-97133932 MS.gene064687:intron 35.0%
GTTACTTGCATAAGCCTATT+GGG + chr3.4:97132155-97132174 None:intergenic 35.0%
GTTGTAGATTCTTGAAAGCA+AGG - chr3.4:97131824-97131843 MS.gene064687:intron 35.0%
GTTTAGATTGACAGTGAGTA+TGG - chr3.4:97132331-97132350 MS.gene064687:intron 35.0%
TACTATCCACATGGTTATCA+TGG - chr3.4:97132077-97132096 MS.gene064687:intron 35.0%
TAGTACTTACCATCTGTCAT+GGG - chr3.4:97134703-97134722 MS.gene064687:intron 35.0%
TCGGGAAAAAAGCAAATTCA+AGG - chr3.4:97134629-97134648 MS.gene064687:intron 35.0%
TCTTCTTCCCTTTGCTTTAT+AGG - chr3.4:97132523-97132542 MS.gene064687:intron 35.0%
TGAATGTTCCATTAGGTTCT+TGG - chr3.4:97133115-97133134 MS.gene064687:intron 35.0%
TGAGAAAGCAAAGCTTATGT+GGG - chr3.4:97131858-97131877 MS.gene064687:intron 35.0%
TGGACTAATGGTGAATTTAG+CGG + chr3.4:97132413-97132432 None:intergenic 35.0%
TGTGACAAAGGGAGTAAAAA+GGG - chr3.4:97134203-97134222 MS.gene064687:intron 35.0%
TGTTCGAACAAAGGCAAAAA+GGG + chr3.4:97134172-97134191 None:intergenic 35.0%
TTAGTACTTACCATCTGTCA+TGG - chr3.4:97134702-97134721 MS.gene064687:intron 35.0%
TTCCATAGAAGCTTAAAACC+AGG + chr3.4:97132943-97132962 None:intergenic 35.0%
TTGAGAAAGCAAAGCTTATG+TGG - chr3.4:97131857-97131876 MS.gene064687:intron 35.0%
TTGTTCGAACAAAGGCAAAA+AGG + chr3.4:97134173-97134192 None:intergenic 35.0%
! TAGGAAAAGTTGATCCCAAT+AGG - chr3.4:97132138-97132157 MS.gene064687:intron 35.0%
! TGATATTGCATATTGACTGG+TGG - chr3.4:97131777-97131796 MS.gene064687:CDS 35.0%
! TTTTGGCATACATAGACAGT+CGG - chr3.4:97134610-97134629 MS.gene064687:intron 35.0%
!! AAAATCTGCTTTTGGTAACC+AGG - chr3.4:97134121-97134140 MS.gene064687:intron 35.0%
!! CTACATCTTAACCTGGTTTT+TGG - chr3.4:97133402-97133421 MS.gene064687:intron 35.0%
!! CTAGGCAAGATTTGTTGATA+AGG - chr3.4:97133865-97133884 MS.gene064687:CDS 35.0%
!! GCAAGATTTGTTGATAAGGT+TGG - chr3.4:97133869-97133888 MS.gene064687:CDS 35.0%
!!! AAAATGTTTTGGTCTTGCCA+TGG + chr3.4:97133345-97133364 None:intergenic 35.0%
!!! CATTTTTTTCAAGCTCACTG+AGG + chr3.4:97134287-97134306 None:intergenic 35.0%
!!! GAATTTTGGTTACTGAGTAC+AGG - chr3.4:97133642-97133661 MS.gene064687:CDS 35.0%
AACCATGTGGATAGTACTTC+TGG + chr3.4:97132073-97132092 None:intergenic 40.0%
AACTTGTCGAACATCCTCAA+TGG + chr3.4:97131493-97131512 None:intergenic 40.0%
AATAGTTGTCTGCATGCAGA+TGG - chr3.4:97133456-97133475 MS.gene064687:intron 40.0%
AGAGCTCATTGCTACAAAGA+AGG - chr3.4:97134398-97134417 MS.gene064687:CDS 40.0%
AGAGTTCAGAGGATGATAAG+TGG - chr3.4:97131355-97131374 MS.gene064687:intron 40.0%
AGCCATTTAGTGCATGACTT+TGG + chr3.4:97132433-97132452 None:intergenic 40.0%
AGTGAGCTACCAGAATTTCT+AGG - chr3.4:97133267-97133286 MS.gene064687:intron 40.0%
AGTGCATGACTTTGGACTAA+TGG + chr3.4:97132425-97132444 None:intergenic 40.0%
AGTTTATCGTGTGGATGCAT+TGG - chr3.4:97134371-97134390 MS.gene064687:CDS 40.0%
ATAGCTGCTAAGAGACACAT+AGG - chr3.4:97132251-97132270 MS.gene064687:CDS 40.0%
ATCATACTCAGGAAAACCAC+CGG + chr3.4:97133900-97133919 None:intergenic 40.0%
ATCCAATGGAGGAAAGACTA+TGG - chr3.4:97131889-97131908 MS.gene064687:intron 40.0%
ATGCGAGGTAACTCAACATT+TGG - chr3.4:97133173-97133192 MS.gene064687:intron 40.0%
CAGTGAGTATGGCTTAATCA+TGG - chr3.4:97132342-97132361 MS.gene064687:intron 40.0%
CATAAGGGTTCTTACCTCAA+TGG + chr3.4:97133065-97133084 None:intergenic 40.0%
CATAGAATTCCCACATGCTT+TGG + chr3.4:97133728-97133747 None:intergenic 40.0%
CCTAGCCTCTCAATATAAAC+AGG + chr3.4:97132122-97132141 None:intergenic 40.0%
CCTGTTTATATTGAGAGGCT+AGG - chr3.4:97132119-97132138 MS.gene064687:intron 40.0%
CTTGGACATGAGTCAGTATA+GGG + chr3.4:97133753-97133772 None:intergenic 40.0%
GCAAAGTAGAACCAAAAACC+AGG + chr3.4:97133416-97133435 None:intergenic 40.0%
GCTGTATGACATCCGATAAA+GGG - chr3.4:97133319-97133338 MS.gene064687:intron 40.0%
GCTTATGCAAGTAACTACCA+TGG - chr3.4:97132160-97132179 MS.gene064687:intron 40.0%
GTCCAAAGTCATGCACTAAA+TGG - chr3.4:97132428-97132447 MS.gene064687:CDS 40.0%
GTGTGACAAAGGGAGTAAAA+AGG - chr3.4:97134202-97134221 MS.gene064687:intron 40.0%
TACCATAGTCTTTCCTCCAT+TGG + chr3.4:97131894-97131913 None:intergenic 40.0%
TACTATCACTTGCCTCTTCT+TGG + chr3.4:97133771-97133790 None:intergenic 40.0%
TACTGAGTACAGGCAAAAAG+TGG - chr3.4:97133652-97133671 MS.gene064687:CDS 40.0%
TACTTGAGATTATCGATGCG+AGG - chr3.4:97133158-97133177 MS.gene064687:intron 40.0%
TCGTAACAATTTCCAACGAC+GGG - chr3.4:97133512-97133531 MS.gene064687:intron 40.0%
TCTTGGACATGAGTCAGTAT+AGG + chr3.4:97133754-97133773 None:intergenic 40.0%
TGAAAGAAGAGAGAGTTCAG+AGG - chr3.4:97131344-97131363 MS.gene064687:CDS 40.0%
TGAGTATGGCTTAATCATGG+CGG - chr3.4:97132345-97132364 MS.gene064687:intron 40.0%
TTCAAGGTAGAAGATGAGGA+GGG + chr3.4:97134261-97134280 None:intergenic 40.0%
TTGAGAAGCTCACCTAAACA+AGG - chr3.4:97132793-97132812 MS.gene064687:CDS 40.0%
TTGGCTCAAAAGGTGAGAAT+AGG - chr3.4:97133993-97134012 MS.gene064687:intron 40.0%
TTTATCATCAATGCTGGTCC+TGG - chr3.4:97132922-97132941 MS.gene064687:intron 40.0%
TTTCAAGGTAGAAGATGAGG+AGG + chr3.4:97134262-97134281 None:intergenic 40.0%
TTTCCTCCATTGGATCATGT+TGG + chr3.4:97131884-97131903 None:intergenic 40.0%
TTTGAGCCAAATGAGTTTCG+TGG + chr3.4:97133983-97134002 None:intergenic 40.0%
TTTGGCATACATAGACAGTC+GGG - chr3.4:97134611-97134630 MS.gene064687:intron 40.0%
! AATTTTGGATGTTCAAGGCG+TGG - chr3.4:97132286-97132305 MS.gene064687:intron 40.0%
! AGGTTCCAGCACAACAATTT+TGG - chr3.4:97132271-97132290 MS.gene064687:intron 40.0%
! ATATTTGAGATACCACGTGC+AGG - chr3.4:97132187-97132206 MS.gene064687:CDS 40.0%
! CGAAACTCATTTGGCTCAAA+AGG - chr3.4:97133983-97134002 MS.gene064687:intron 40.0%
! GGATGCAGAAAATCTGCTTT+TGG - chr3.4:97134113-97134132 MS.gene064687:intron 40.0%
! GTTGATAAGGTTGGTCATAC+CGG - chr3.4:97133878-97133897 MS.gene064687:CDS 40.0%
! TATTTGAGATACCACGTGCA+GGG - chr3.4:97132188-97132207 MS.gene064687:CDS 40.0%
!!! GTCCTGGTTTTAAGCTTCTA+TGG - chr3.4:97132938-97132957 MS.gene064687:CDS 40.0%
ACAGCCATCATGATCTACAC+AGG + chr3.4:97133304-97133323 None:intergenic 45.0%
CAACTACCGCCTAGAAATTC+TGG + chr3.4:97133279-97133298 None:intergenic 45.0%
CGTAACAATTTCCAACGACG+GGG - chr3.4:97133513-97133532 MS.gene064687:intron 45.0%
GAATGCTGCAGTTTATCGTG+TGG - chr3.4:97134362-97134381 MS.gene064687:CDS 45.0%
GACAAAGGGAGTAAAAAGGG+AGG - chr3.4:97134206-97134225 MS.gene064687:intron 45.0%
GCGTTTCAAGGTAGAAGATG+AGG + chr3.4:97134265-97134284 None:intergenic 45.0%
GCTCACTGAGAACTTATAGC+TGG + chr3.4:97133254-97133273 None:intergenic 45.0%
GGCTGTATGACATCCGATAA+AGG - chr3.4:97133318-97133337 MS.gene064687:intron 45.0%
GTAACAATTTCCAACGACGG+GGG - chr3.4:97133514-97133533 MS.gene064687:intron 45.0%
GTAACCAGGACTGTTACAGT+GGG - chr3.4:97134135-97134154 MS.gene064687:intron 45.0%
TAACAATTTCCAACGACGGG+GGG - chr3.4:97133515-97133534 MS.gene064687:intron 45.0%
TATCATGGTGTGGACAAGGA+GGG - chr3.4:97132092-97132111 MS.gene064687:intron 45.0%
TCAAGGTAGAAGATGAGGAG+GGG + chr3.4:97134260-97134279 None:intergenic 45.0%
TCCACACCATGATAACCATG+TGG + chr3.4:97132086-97132105 None:intergenic 45.0%
TCCACATGGTTATCATGGTG+TGG - chr3.4:97132082-97132101 MS.gene064687:intron 45.0%
TCGAACATCCTCAATGGACA+GGG + chr3.4:97131487-97131506 None:intergenic 45.0%
TGAGGATGTTCGACAAGTTG+AGG - chr3.4:97131494-97131513 MS.gene064687:intron 45.0%
TGCACCTGTGTAGATCATGA+TGG - chr3.4:97133297-97133316 MS.gene064687:intron 45.0%
TGCATGCAGATGGTTCTTAG+TGG - chr3.4:97133466-97133485 MS.gene064687:intron 45.0%
TGGTTATCATGGTGTGGACA+AGG - chr3.4:97132088-97132107 MS.gene064687:intron 45.0%
TTAGCAGCTATAGAGCAAGC+TGG + chr3.4:97132242-97132261 None:intergenic 45.0%
TTATCATGGTGTGGACAAGG+AGG - chr3.4:97132091-97132110 MS.gene064687:intron 45.0%
! ACTGACTCATGTCCAAGAAG+AGG - chr3.4:97133756-97133775 MS.gene064687:CDS 45.0%
! GAGCTACCAGAATTTCTAGG+CGG - chr3.4:97133270-97133289 MS.gene064687:intron 45.0%
! GCATATTGACTGGTGGAATG+TGG - chr3.4:97131784-97131803 MS.gene064687:CDS 45.0%
! TCCTAAACAGGCTTTGTACG+AGG - chr3.4:97134566-97134585 MS.gene064687:CDS 45.0%
! TTTTCTCAAAACCCTGCACG+TGG + chr3.4:97132202-97132221 None:intergenic 45.0%
!! GTCCAGAAGTACTATCCACA+TGG - chr3.4:97132068-97132087 MS.gene064687:intron 45.0%
AACAATTTCCAACGACGGGG+GGG - chr3.4:97133516-97133535 MS.gene064687:intron 50.0%
AGCAGCTCCTCTTTCTCACT+TGG + chr3.4:97134342-97134361 None:intergenic 50.0%
ATCACCTCTCCCAAAGCATG+TGG - chr3.4:97133715-97133734 MS.gene064687:CDS 50.0%
CTCCTCTTTCTCACTTGGCA+TGG + chr3.4:97134337-97134356 None:intergenic 50.0%
GAGCAATTCCCTGTCCATTG+AGG - chr3.4:97131476-97131495 MS.gene064687:intron 50.0%
GATGAGTTCTCGAGCAGACT+TGG + chr3.4:97132564-97132583 None:intergenic 50.0%
GCAGCAAAAGTAGTGGCAGT+AGG - chr3.4:97131454-97131473 MS.gene064687:intron 50.0%
GCAGCACCACGAAACTCATT+TGG - chr3.4:97133974-97133993 MS.gene064687:intron 50.0%
GCCTCGTACAAAGCCTGTTT+AGG + chr3.4:97134570-97134589 None:intergenic 50.0%
GGTAACCAGGACTGTTACAG+TGG - chr3.4:97134134-97134153 MS.gene064687:intron 50.0%
GTAGAAGATGAGGAGGGGTT+TGG + chr3.4:97134255-97134274 None:intergenic 50.0%
GTCGAACATCCTCAATGGAC+AGG + chr3.4:97131488-97131507 None:intergenic 50.0%
GTCTTGCCATGGCCCTTTAT+CGG + chr3.4:97133334-97133353 None:intergenic 50.0%
TCACCTCTCCCAAAGCATGT+GGG - chr3.4:97133716-97133735 MS.gene064687:CDS 50.0%
TGACATCCGATAAAGGGCCA+TGG - chr3.4:97133325-97133344 MS.gene064687:CDS 50.0%
TGACTGGTGGAATGTGGACA+TGG - chr3.4:97131790-97131809 MS.gene064687:CDS 50.0%
TGCCATGCCAAGTGAGAAAG+AGG - chr3.4:97134332-97134351 MS.gene064687:intron 50.0%
TGTCTGTAAAGCAGTGCTGC+TGG - chr3.4:97134750-97134769 MS.gene064687:intron 50.0%
TGTGGGCCAACATGATCCAA+TGG - chr3.4:97131875-97131894 MS.gene064687:intron 50.0%
! AAGCTCACTGAGGCGTTTCA+AGG + chr3.4:97134277-97134296 None:intergenic 50.0%
! GATAAGGTTGGTCATACCGG+TGG - chr3.4:97133881-97133900 MS.gene064687:CDS 50.0%
!! ATTCCCACATGCTTTGGGAG+AGG + chr3.4:97133722-97133741 None:intergenic 50.0%
!! GGGGTTTGGCTTTGTGAATC+TGG + chr3.4:97134241-97134260 None:intergenic 50.0%
GATGCCCACTGTAACAGTCC+TGG + chr3.4:97134142-97134161 None:intergenic 55.0%
GGGCCAACATGATCCAATGG+AGG - chr3.4:97131878-97131897 MS.gene064687:intron 55.0%
!! GGTGCTGCTTGCTTCTCCTT+TGG + chr3.4:97133962-97133981 None:intergenic 55.0%
TTCAATCACCCCCCCGTCGT+TGG + chr3.4:97133527-97133546 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 97131171 97134775 97131171 ID=MS.gene064687
chr3.4 mRNA 97131171 97134775 97131171 ID=MS.gene064687.t1;Parent=MS.gene064687
chr3.4 exon 97134760 97134775 97134760 ID=MS.gene064687.t1.exon1;Parent=MS.gene064687.t1
chr3.4 CDS 97134760 97134775 97134760 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97134342 97134612 97134342 ID=MS.gene064687.t1.exon2;Parent=MS.gene064687.t1
chr3.4 CDS 97134342 97134612 97134342 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97134016 97134115 97134016 ID=MS.gene064687.t1.exon3;Parent=MS.gene064687.t1
chr3.4 CDS 97134016 97134115 97134016 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97133639 97133905 97133639 ID=MS.gene064687.t1.exon4;Parent=MS.gene064687.t1
chr3.4 CDS 97133639 97133905 97133639 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97133324 97133401 97133324 ID=MS.gene064687.t1.exon5;Parent=MS.gene064687.t1
chr3.4 CDS 97133324 97133401 97133324 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97132938 97133039 97132938 ID=MS.gene064687.t1.exon6;Parent=MS.gene064687.t1
chr3.4 CDS 97132938 97133039 97132938 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97132767 97132816 97132767 ID=MS.gene064687.t1.exon7;Parent=MS.gene064687.t1
chr3.4 CDS 97132767 97132816 97132767 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97132578 97132677 97132578 ID=MS.gene064687.t1.exon8;Parent=MS.gene064687.t1
chr3.4 CDS 97132578 97132677 97132578 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97132376 97132471 97132376 ID=MS.gene064687.t1.exon9;Parent=MS.gene064687.t1
chr3.4 CDS 97132376 97132471 97132376 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97132169 97132282 97132169 ID=MS.gene064687.t1.exon10;Parent=MS.gene064687.t1
chr3.4 CDS 97132169 97132282 97132169 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97131942 97132077 97131942 ID=MS.gene064687.t1.exon11;Parent=MS.gene064687.t1
chr3.4 CDS 97131942 97132077 97131942 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97131527 97131825 97131527 ID=MS.gene064687.t1.exon12;Parent=MS.gene064687.t1
chr3.4 CDS 97131527 97131825 97131527 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97131296 97131370 97131296 ID=MS.gene064687.t1.exon13;Parent=MS.gene064687.t1
chr3.4 CDS 97131296 97131370 97131296 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
chr3.4 exon 97131171 97131182 97131171 ID=MS.gene064687.t1.exon14;Parent=MS.gene064687.t1
chr3.4 CDS 97131171 97131182 97131171 ID=cds.MS.gene064687.t1;Parent=MS.gene064687.t1
Gene Sequence

>MS.gene064687

ATGTCAGAACTTCTTTGTGAGTAGTAGTACCTCCTTTGTTACTTTTTATTCTTTTTCATGAATTTAGGTGTTTATTTTTGTCATCATTCTTTGATTGAGCTGAGTTTAGTTTAGTTGAATGAATGAATGAATTATGACACTTTTGAAACACTACTGATTATAGTAGGCAACGATGAAAGAAGAGAGAGTTCAGAGGATGATAAGTGGAAAAGAATTGGAAGTCTTAAAAAGAAAGCAATAAATGCATCATGCAAATTAAGGCATTCTCTTAAGAAGAAAAGAAGCAGCAAAAGTAGTGGCAGTAGGAGCAATTCCCTGTCCATTGAGGATGTTCGACAAGTTGAGGAGCTAAATGCAGTCGATGCATTTCGACAAACACTTCTACTAGACAACTTGCTTCCTTCAATACATGATGACTATCATATGTTATTGAGGTTACACACCATTATGCTTTACTTGCTATGTATGTTCAAGCATGTCCATGAAAATTAATTGAAAAATTGTTTTGGCAAGTTCTTTCAAACACTTTGTCAAGTGCTTATTCCAGTAGATAAGTTCTCATAAGCTATTCATATGCAACCTAGATCTCTTTGCATATTCATAGTATGATATTGCATATTGACTGGTGGAATGTGGACATGGTTTGATGTTACGTTGTAGATTCTTGAAAGCAAGGAAGTTTGATATTGAGAAAGCAAAGCTTATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGTGAGCAATCTGATTCACTCACTAATCATGTTTCATTTGATAATCTAAACATTGACTCTTTTTTTTTTCATATTTGGTGTTCATACTATACTATGGTTTTTTCTCTATAGGATTTTGATTTCAAGGAGTTGCAAGAAGTCCAGAAGTACTATCCACATGGTTATCATGGTGTGGACAAGGAGGGAAGACCTGTTTATATTGAGAGGCTAGGAAAAGTTGATCCCAATAGGCTTATGCAAGTAACTACCATGGAAAGATATTTGAGATACCACGTGCAGGGTTTTGAGAAAACATTCTCTGTGAAGTTTCCAGCTTGCTCTATAGCTGCTAAGAGACACATAGGTTCCAGCACAACAATTTTGGATGTTCAAGGCGTGGTAAGTTGTCTGTCTAAATGCATGTTTAGATTGACAGTGAGTATGGCTTAATCATGGCGGCACCATGATTTAATTGAAGCTCTAAAATAGCACACTGCAATTCCGCTAAATTCACCATTAGTCCAAAGTCATGCACTAAATGGCTATTGAAAGTTATTCGAATCGAACACCATATTAATTTTAAATTAATTAGGACTTGAGCTTGTATTGACTATTCTTCTTCCCTTTGCTTTATAGGGTTTCAAAAACTTCACCAAGTCTGCTCGAGAACTCATCATTCAGCTGCAGAAGATTGATAGTGATTACTATCCTGAAGTATGTAGAATAAGATAGTTTACATAAACATGTCGATAAGAACTCAAGATTTTTTTTTAAAAGAATATTGTAATAACTCTGAGCATGTTAAACAATAGCTTCTCATATAAACTGAAATTAGTTTCTATATCTCAATGTTTTCATTTAACTTCTCTATAAACTTTTTTCAATTGAGAAGCTCACCTAAACAAGGAACTATGTCTAAATCGTTAAATTTTTAAAAGTTCATTTTTCTAATTATTTGTAGTGTTCCTCATTTAAGATATGTAACTGACATTGTGCAGACACTTCATCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTATGGAACACAGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATGTATGTGTTCATTACTTGAGTTATTGTTTTTTGTGTCAGATTTTTATAAGATTCCATTGAGGTAAGAACCCTTATGTATTTTCCTGAAATAATGATGAATTGAAATTGAATGTTCCATTAGGTTCTTGGAAACAAGTTCCACAGTAAATTACTTGAGATTATCGATGCGAGGTAACTCAACATTTGGTTCTGTTATTGGCATAATTTCTCAATCAACTTATATTGTTATTTGAAAATTCTGACCAGCTATAAGTTCTCAGTGAGCTACCAGAATTTCTAGGCGGTAGTTGCACCTGTGTAGATCATGATGGCTGTATGACATCCGATAAAGGGCCATGGCAAGACCAAAACATTTTAAAGGTTTTCCACTTATTATTAATCATAGGATTCATACTACATCTTAACCTGGTTTTTGGTTCTACTTTGCATTTTCTGTGACTCAATTAGAATAGTTGTCTGCATGCAGATGGTTCTTAGTGGTAAAGTGCAATGTTCTAAACAAATCGTAACAATTTCCAACGACGGGGGGGTGATTGAATGTGATAAAACATCTTTTCCAAAGGTACAGTTTTTCATTTCTATCTTAGACGCTGCATGATGTGATGTAATAATTATCACTTGCTATAATCCTTTGAATTTTGGTTACTGAGTACAGGCAAAAAGTGGCTATACATCTACTGGAGAATCAGTATCTGAAGTTGAAGATATCACCTCTCCCAAAGCATGTGGGAATTCTATGAACCCTATACTGACTCATGTCCAAGAAGAGGCAAGTGATAGTACATTAATTACAAGGTTACACAAAACAAAAACGTTGCAACGAATAACAAATAAATATAACTGTTTTTATACTCGTCTAGGCAAGATTTGTTGATAAGGTTGGTCATACCGGTGGTTTTCCTGAGTATGATGAATATGTTCCCATGGTTGACAAGATTATTGATGTTGGACCAAAGGAGAAGCAAGCAGCACCACGAAACTCATTTGGCTCAAAAGGTGAGAATAGGTTTATACTACAGATTAGGATATTTAGGTTCCATTTATATTGGATGTCAAACATCTCGTTGATACTTAGTAGCAGTCATTAAAGAATCTTTATGGCATGGATGCAGAAAATCTGCTTTTGGTAACCAGGACTGTTACAGTGGGCATCGTGTTTGCCCTTTTTGCCTTTGTTCGAACAATAGCATTTCGTGTGACAAAGGGAGTAAAAAGGGAGGAACTTGCTACCAGATTCACAAAGCCAAACCCCTCCTCATCTTCTACCTTGAAACGCCTCAGTGAGCTTGAAAAAAATGTTGACATACTACAGTCAAAACTTAATGCCATGCCAAGTGAGAAAGAGGAGCTGCTGAATGCTGCAGTTTATCGTGTGGATGCATTGGAAGCAGAGCTCATTGCTACAAAGAAGGTAACTGTATTTCATTTCAAATCAAATTATATATCATGTAGATTTTTTTGCCACGTCATTGTTAAGAACTTCTTTAACTTTAGGTGTGTACATGATGTACGCAAGATTGTTCAAAAAATTGTTATGATAATCTAGCATGTTCAATTTCCTAAACAGGCTTTGTACGAGGCTTTAATGAGACAAGAAGAACTTTTGGCATACATAGACAGTCGGGAAAAAAGCAAATTCAAGGTAAGTCAAAAGTTAAGGCGTCTTGTCCAGTTTATATAAATCAAATGCTACTTAGTACTTACCATCTGTCATGGGAATTTTTATAAAATGTGTTCATTCTGTCTGTAAAGCAGTGCTGCTGGTAA
Protein sequence

>MS.gene064687.t1

MSELLLGNDERRESSEDDKWKRIGSLKKKAINASCKLRHSLKKKRSSKSSGSRSNSLSIEDVRQVEELNAVDAFRQTLLLDNLLPSIHDDYHMLLRFLKARKFDIEKAKLMWANMIQWRKDYGTDTIIEDFDFKELQEVQKYYPHGYHGVDKEGRPVYIERLGKVDPNRLMQVTTMERYLRYHVQGFEKTFSVKFPACSIAAKRHIGSSTTILDVQGVGFKNFTKSARELIIQLQKIDSDYYPETLHQMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGNKFHSKLLEIIDASELPEFLGGSCTCVDHDGCMTSDKGPWQDQNILKMVLSGKVQCSKQIVTISNDGGVIECDKTSFPKAKSGYTSTGESVSEVEDITSPKACGNSMNPILTHVQEEARFVDKVGHTGGFPEYDEYVPMVDKIIDVGPKEKQAAPRNSFGSKENLLLVTRTVTVGIVFALFAFVRTIAFRVTKGVKREELATRFTKPNPSSSSTLKRLSELEKNVDILQSKLNAMPSEKEELLNAAVYRVDALEAELIATKKALYEALMRQEELLAYIDSREKSKFKCCW