Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064761.t1 | XP_003603764.1 | 88.3 | 188 | 21 | 1 | 1 | 188 | 1 | 187 | 2.60E-44 | 189.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064761.t1 | G7J587 | 88.3 | 188 | 21 | 1 | 1 | 188 | 1 | 187 | 1.9e-44 | 189.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052032 | MS.gene064761 | 0.803253 | 3.81E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene064761 | 0.808349 | 3.24E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064761.t1 | MTR_3g113940 | 90.909 | 264 | 23 | 1 | 1 | 264 | 1 | 263 | 6.59e-96 | 282 |
| MS.gene064761.t1 | MTR_3g110202 | 51.961 | 102 | 47 | 1 | 117 | 218 | 97 | 196 | 2.22e-27 | 105 |
| MS.gene064761.t1 | MTR_1g006605 | 40.769 | 130 | 53 | 2 | 52 | 163 | 2 | 125 | 7.67e-20 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064761.t1 | AT1G19990 | 43.750 | 272 | 116 | 10 | 2 | 261 | 3 | 249 | 8.51e-37 | 131 |
| MS.gene064761.t1 | AT5G11600 | 58.750 | 80 | 33 | 0 | 112 | 191 | 114 | 193 | 4.41e-26 | 102 |
| MS.gene064761.t1 | AT5G11600 | 58.750 | 80 | 33 | 0 | 112 | 191 | 114 | 193 | 4.41e-26 | 102 |
Find 44 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTTTCTTTGCCACCTCTTT+AGG | 0.245967 | 3.4:-97888397 | None:intergenic |
| CAACGGTAAACCCCTTTCTA+AGG | 0.258341 | 3.4:+97885693 | MS.gene064761:CDS |
| TTTCTTAATTGTAACAGATT+TGG | 0.302366 | 3.4:-97888500 | None:intergenic |
| ACAGCAGTTACAGACTTAAC+AGG | 0.336791 | 3.4:-97888466 | None:intergenic |
| TGCTTTGATGTGGAGTTTGT+TGG | 0.359320 | 3.4:-97888562 | None:intergenic |
| ACGGAAGAATTTGGGGTAGC+TGG | 0.368565 | 3.4:-97888529 | None:intergenic |
| AACTGCAGGTTGATGGAATC+AGG | 0.375812 | 3.4:+97888367 | MS.gene064761:intron |
| ATTTGTGCCATTTCGCTAGT+TGG | 0.401961 | 3.4:-97886243 | None:intergenic |
| CTAGCGAAATGGCACAAATC+TGG | 0.411971 | 3.4:+97886247 | MS.gene064761:CDS |
| GTGGCACGAGGAATGGGTTC+AGG | 0.420548 | 3.4:-97885748 | None:intergenic |
| CTTCTCGTTCCAAAGTTAAG+AGG | 0.423874 | 3.4:+97885776 | MS.gene064761:CDS |
| TGATTGCAACTGCAGGTTGA+TGG | 0.428702 | 3.4:+97888360 | MS.gene064761:intron |
| TCAGATTTGTGCTTCTTGGT+TGG | 0.428762 | 3.4:-97888604 | None:intergenic |
| AAAGAAGAAGGTAAAGAAAG+AGG | 0.432786 | 3.4:+97886000 | MS.gene064761:CDS |
| CTTGAGTTCCCTCTTAACTT+TGG | 0.435585 | 3.4:-97885785 | None:intergenic |
| AGCTGAAGTGGCACGAGGAA+TGG | 0.440315 | 3.4:-97885755 | None:intergenic |
| GTCTCGTAGAAAACCCTAGA+AGG | 0.445303 | 3.4:-97886204 | None:intergenic |
| GAAGGTTAAGAAAGTAAAGA+AGG | 0.462009 | 3.4:+97886045 | MS.gene064761:CDS |
| GAAGGTAAAGAAAGAGGAAG+AGG | 0.464209 | 3.4:+97886006 | MS.gene064761:CDS |
| GCTGAAGTGGCACGAGGAAT+GGG | 0.464474 | 3.4:-97885754 | None:intergenic |
| CGGAAGAATTTGGGGTAGCT+GGG | 0.468663 | 3.4:-97888528 | None:intergenic |
| ACAAATTCCAACTAGCGAAA+TGG | 0.472854 | 3.4:+97886236 | MS.gene064761:CDS |
| TTAGAAAGGGGTTTACCGTT+GGG | 0.482681 | 3.4:-97885691 | None:intergenic |
| TTTGTCATCGTCGTCTTCGT+CGG | 0.494023 | 3.4:-97885824 | None:intergenic |
| CTTAGAAAGGGGTTTACCGT+TGG | 0.503604 | 3.4:-97885692 | None:intergenic |
| GGTGGATCACGTTTCTGTCC+AGG | 0.503762 | 3.4:-97886079 | None:intergenic |
| ATCAGGCTTGCTTCCTAAAG+AGG | 0.510477 | 3.4:+97888384 | MS.gene064761:CDS |
| ATTGTTATGCAAACCTCTGC+AGG | 0.514578 | 3.4:-97886100 | None:intergenic |
| TGTGCTGTGTTAGGTTGTGA+AGG | 0.525327 | 3.4:+97885964 | MS.gene064761:intron |
| GGTTGTTGTTAGAGAAACGA+AGG | 0.534615 | 3.4:+97886027 | MS.gene064761:CDS |
| AAGAAGGTTTATGATTTACC+TGG | 0.546770 | 3.4:+97886061 | MS.gene064761:CDS |
| AAAGAAAGCTCTGCAGCAGA+AGG | 0.552066 | 3.4:+97888435 | MS.gene064761:CDS |
| AACGGTAAACCCCTTTCTAA+GGG | 0.555197 | 3.4:+97885694 | MS.gene064761:CDS |
| GGAGTTTGTCTGCTTTGATG+TGG | 0.556824 | 3.4:-97888572 | None:intergenic |
| CTTCTTGGTTGGCTTCGATG+TGG | 0.562372 | 3.4:-97888593 | None:intergenic |
| TTCTCGTTCCAAAGTTAAGA+GGG | 0.573394 | 3.4:+97885777 | MS.gene064761:CDS |
| ACAGGTTTCGAATCTTCAGA+AGG | 0.581427 | 3.4:-97885616 | None:intergenic |
| CAAAGTTAAGAGGGAACTCA+AGG | 0.601249 | 3.4:+97885786 | MS.gene064761:CDS |
| TTTGGAACGAGAAGCTGAAG+TGG | 0.604596 | 3.4:-97885767 | None:intergenic |
| GAAACGTGATCCACCTGCAG+AGG | 0.633728 | 3.4:+97886087 | MS.gene064761:CDS |
| CGAGAAGCTGAAGTGGCACG+AGG | 0.634997 | 3.4:-97885760 | None:intergenic |
| ATCTGAAAATTCGAGCTCTG+AGG | 0.636255 | 3.4:+97888621 | MS.gene064761:CDS |
| AGGCTTGCTTCCTAAAGAGG+TGG | 0.651439 | 3.4:+97888387 | MS.gene064761:CDS |
| GTTATGCAAACCTCTGCAGG+TGG | 0.653027 | 3.4:-97886097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATTATATACAGTTTA+AGG | + | chr3.4:97887188-97887207 | MS.gene064761:intron | 10.0% |
| !!! | ATTACATTCTTTTAGATATT+TGG | - | chr3.4:97888233-97888252 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTACTTTTCTTTT+GGG | + | chr3.4:97887375-97887394 | MS.gene064761:intron | 15.0% |
| !!! | TTTTTTTTACTTTTCTTTTG+GGG | + | chr3.4:97887376-97887395 | MS.gene064761:intron | 15.0% |
| !! | AAAATTGTTAAAGTCCTATT+TGG | - | chr3.4:97886580-97886599 | None:intergenic | 20.0% |
| !! | AATTGCAATTCATCATATTT+AGG | + | chr3.4:97886318-97886337 | MS.gene064761:intron | 20.0% |
| !! | ATTAAGATGTTTATCCAAAT+AGG | + | chr3.4:97886563-97886582 | MS.gene064761:intron | 20.0% |
| !! | ATTGCAATTCATCATATTTA+GGG | + | chr3.4:97886319-97886338 | MS.gene064761:intron | 20.0% |
| !! | TTTCTTAATTGTAACAGATT+TGG | - | chr3.4:97888503-97888522 | None:intergenic | 20.0% |
| !!! | AACCAATTTAAAATGATATG+AGG | - | chr3.4:97888013-97888032 | None:intergenic | 20.0% |
| !!! | AATAGGACTTTAACAATTTT+AGG | + | chr3.4:97886580-97886599 | MS.gene064761:intron | 20.0% |
| !!! | ACCAATTTAAAATGATATGA+GGG | - | chr3.4:97888012-97888031 | None:intergenic | 20.0% |
| !!! | CTATTTTAGAAATGTATGTT+CGG | + | chr3.4:97885926-97885945 | MS.gene064761:intron | 20.0% |
| !!! | GCTTTTTTTTACTTTTCTTT+TGG | + | chr3.4:97887374-97887393 | MS.gene064761:intron | 20.0% |
| ! | AACAAAAAAGAAGAGAAAAG+TGG | + | chr3.4:97888675-97888694 | MS.gene064761:CDS | 25.0% |
| ! | AACATAAAAACGAACTGAAA+AGG | - | chr3.4:97886149-97886168 | None:intergenic | 25.0% |
| ! | AATGTAGCTTATAGCTTATA+CGG | + | chr3.4:97886445-97886464 | MS.gene064761:intron | 25.0% |
| ! | AGCTACATTCATAAATTACA+TGG | - | chr3.4:97886434-97886453 | None:intergenic | 25.0% |
| ! | ATATAATATATAACCCTGTG+AGG | - | chr3.4:97887180-97887199 | None:intergenic | 25.0% |
| ! | CAAATCAAATATAGACAGTA+AGG | - | chr3.4:97887516-97887535 | None:intergenic | 25.0% |
| ! | CGCAATTTAATATATTTCCA+GGG | - | chr3.4:97887122-97887141 | None:intergenic | 25.0% |
| ! | GCAATTTAATATATTTCCAG+GGG | - | chr3.4:97887121-97887140 | None:intergenic | 25.0% |
| ! | GTTTATATCCTTTGGATTAA+CGG | + | chr3.4:97887599-97887618 | MS.gene064761:intron | 25.0% |
| ! | TAAGTTTAATTGCTAGACTT+TGG | + | chr3.4:97886611-97886630 | MS.gene064761:intron | 25.0% |
| ! | TTGAAACATAAGACAAGTAT+AGG | + | chr3.4:97887816-97887835 | MS.gene064761:intron | 25.0% |
| !! | ATGTGTAATGACTTGTATTT+AGG | + | chr3.4:97887214-97887233 | MS.gene064761:intron | 25.0% |
| !! | CCAATTTAAAATGATATGAG+GGG | - | chr3.4:97888011-97888030 | None:intergenic | 25.0% |
| !! | GTTAAGTTGTTTATATCCTT+TGG | + | chr3.4:97887591-97887610 | MS.gene064761:intron | 25.0% |
| !! | TCTTTTTAACGGAAGAATTT+GGG | - | chr3.4:97888540-97888559 | None:intergenic | 25.0% |
| !! | TTCTTTTTAACGGAAGAATT+TGG | - | chr3.4:97888541-97888560 | None:intergenic | 25.0% |
| !!! | ACTTTAACAATTTTAGGAGT+TGG | + | chr3.4:97886586-97886605 | MS.gene064761:intron | 25.0% |
| !!! | AGCTTTGTTATTTGATTTTG+GGG | + | chr3.4:97887851-97887870 | MS.gene064761:intron | 25.0% |
| !!! | AGGTTGTCTTGTTTAAATAA+GGG | - | chr3.4:97888141-97888160 | None:intergenic | 25.0% |
| !!! | GAGCTTTGTTATTTGATTTT+GGG | + | chr3.4:97887850-97887869 | MS.gene064761:intron | 25.0% |
| !!! | GTTTGATTTGTTAACTATGA+AGG | + | chr3.4:97887746-97887765 | MS.gene064761:intron | 25.0% |
| !!! | TGAGCTTTGTTATTTGATTT+TGG | + | chr3.4:97887849-97887868 | MS.gene064761:intron | 25.0% |
| !!! | TTTTGTTGTTTTCTTGTCTT+AGG | + | chr3.4:97887625-97887644 | MS.gene064761:intron | 25.0% |
| AAAGAAGAAGGTAAAGAAAG+AGG | + | chr3.4:97886000-97886019 | MS.gene064761:CDS | 30.0% | |
| AAAGTGCATTTGAATGGAAA+GGG | - | chr3.4:97886967-97886986 | None:intergenic | 30.0% | |
| AACAGAAACATAAGCAGAAT+AGG | - | chr3.4:97886287-97886306 | None:intergenic | 30.0% | |
| AAGAAGGTTTATGATTTACC+TGG | + | chr3.4:97886061-97886080 | MS.gene064761:CDS | 30.0% | |
| AATCACTTCTGTCCTTAAAT+TGG | - | chr3.4:97887252-97887271 | None:intergenic | 30.0% | |
| AGAAGTGAAGAAAAAGAAGA+AGG | + | chr3.4:97885988-97886007 | MS.gene064761:CDS | 30.0% | |
| AGAATTTACACAAACACAAG+GGG | - | chr3.4:97887279-97887298 | None:intergenic | 30.0% | |
| AGAGAATTTACACAAACACA+AGG | - | chr3.4:97887281-97887300 | None:intergenic | 30.0% | |
| ATGCTCGTATTATAGTCTAA+TGG | + | chr3.4:97888109-97888128 | MS.gene064761:intron | 30.0% | |
| CAAAAAGATATCCAAAACCA+AGG | + | chr3.4:97885855-97885874 | MS.gene064761:CDS | 30.0% | |
| CAAAATAACCGTTAATCCAA+AGG | - | chr3.4:97887610-97887629 | None:intergenic | 30.0% | |
| CACTTCATAATTCACATTCA+TGG | - | chr3.4:97886659-97886678 | None:intergenic | 30.0% | |
| GAAATGTGTATCATCAAAAC+TGG | + | chr3.4:97888253-97888272 | MS.gene064761:intron | 30.0% | |
| GAAGGTTAAGAAAGTAAAGA+AGG | + | chr3.4:97886045-97886064 | MS.gene064761:CDS | 30.0% | |
| GAGAATTTACACAAACACAA+GGG | - | chr3.4:97887280-97887299 | None:intergenic | 30.0% | |
| GCGCAATTTAATATATTTCC+AGG | - | chr3.4:97887123-97887142 | None:intergenic | 30.0% | |
| GTGTAAATTCTCTCAAATGA+TGG | + | chr3.4:97887288-97887307 | MS.gene064761:intron | 30.0% | |
| TAAAACCAGAAGCCAATTTA+AGG | + | chr3.4:97887237-97887256 | MS.gene064761:intron | 30.0% | |
| TAAATTACATGGAGAGCTTA+TGG | - | chr3.4:97886423-97886442 | None:intergenic | 30.0% | |
| TAACAAATCAAACACCTGTT+AGG | - | chr3.4:97887739-97887758 | None:intergenic | 30.0% | |
| TACTTGTGAATTCGATTAAG+AGG | + | chr3.4:97886735-97886754 | MS.gene064761:intron | 30.0% | |
| TTGTACAAAGTGCATTTGAA+TGG | - | chr3.4:97886973-97886992 | None:intergenic | 30.0% | |
| ! | AGAATTTCGATTTTGTACCT+TGG | - | chr3.4:97885875-97885894 | None:intergenic | 30.0% |
| ! | AGGTGGAGATTTTTATGTTT+TGG | - | chr3.4:97887916-97887935 | None:intergenic | 30.0% |
| ! | ATGCTATTATTTTCCTCACA+GGG | + | chr3.4:97887164-97887183 | MS.gene064761:intron | 30.0% |
| ! | ATTTTCAGATTTGTGCTTCT+TGG | - | chr3.4:97888611-97888630 | None:intergenic | 30.0% |
| ! | CAATTCATCATATTTAGGGT+CGG | + | chr3.4:97886323-97886342 | MS.gene064761:intron | 30.0% |
| ! | CCCCTCATATCATTTTAAAT+TGG | + | chr3.4:97888008-97888027 | MS.gene064761:intron | 30.0% |
| ! | CTTTTTAACGGAAGAATTTG+GGG | - | chr3.4:97888539-97888558 | None:intergenic | 30.0% |
| ! | TTTAAAATGATATGAGGGGA+TGG | - | chr3.4:97888007-97888026 | None:intergenic | 30.0% |
| !! | AAAAGTACTCTTTGAGTCTA+AGG | - | chr3.4:97887071-97887090 | None:intergenic | 30.0% |
| !! | CAGGTTGTCTTGTTTAAATA+AGG | - | chr3.4:97888142-97888161 | None:intergenic | 30.0% |
| !! | GATGATTCTGATTTTGACAT+TGG | + | chr3.4:97888646-97888665 | MS.gene064761:CDS | 30.0% |
| !! | TCTTAGGTCAGAGTTATTTT+AGG | + | chr3.4:97887641-97887660 | MS.gene064761:intron | 30.0% |
| !! | TTGGATATCTTTTTGGAGAT+AGG | - | chr3.4:97885850-97885869 | None:intergenic | 30.0% |
| !! | TTTTTAGAGAGATCCTTCTA+GGG | + | chr3.4:97886191-97886210 | MS.gene064761:intron | 30.0% |
| !!! | ATAGAGCGTAGAAGATTTTT+TGG | + | chr3.4:97888328-97888347 | MS.gene064761:intron | 30.0% |
| !!! | CTTGGTTTTGGATATCTTTT+TGG | - | chr3.4:97885857-97885876 | None:intergenic | 30.0% |
| !!! | GTTTGTTGGCTTCTTTTTAA+CGG | - | chr3.4:97888551-97888570 | None:intergenic | 30.0% |
| !!! | TTTTTTAGAGAGATCCTTCT+AGG | + | chr3.4:97886190-97886209 | MS.gene064761:intron | 30.0% |
| AAAGAGTGATGTCAGATCTA+GGG | - | chr3.4:97887557-97887576 | None:intergenic | 35.0% | |
| AACAAGCGAACAAATGCATA+AGG | - | chr3.4:97887493-97887512 | None:intergenic | 35.0% | |
| AACAATACAATGCCAGTAAC+TGG | - | chr3.4:97888087-97888106 | None:intergenic | 35.0% | |
| AATTGTCTTCCATTCACAGT+TGG | - | chr3.4:97886784-97886803 | None:intergenic | 35.0% | |
| ACAAATTCCAACTAGCGAAA+TGG | + | chr3.4:97886236-97886255 | MS.gene064761:CDS | 35.0% | |
| ACAATACAATGCCAGTAACT+GGG | - | chr3.4:97888086-97888105 | None:intergenic | 35.0% | |
| ACTCGTAGATAATCATACAC+CGG | + | chr3.4:97887421-97887440 | MS.gene064761:intron | 35.0% | |
| ACTGATAAAATGAGACCCTA+AGG | - | chr3.4:97886880-97886899 | None:intergenic | 35.0% | |
| AGGCTCACATTCAAACATAA+AGG | - | chr3.4:97887051-97887070 | None:intergenic | 35.0% | |
| CAAAGTGCATTTGAATGGAA+AGG | - | chr3.4:97886968-97886987 | None:intergenic | 35.0% | |
| CATGGAGAATACACAGAAAA+AGG | - | chr3.4:97887936-97887955 | None:intergenic | 35.0% | |
| CTACCAGACAAGATAAGAAA+AGG | - | chr3.4:97888190-97888209 | None:intergenic | 35.0% | |
| GGCTCACATTCAAACATAAA+GGG | - | chr3.4:97887050-97887069 | None:intergenic | 35.0% | |
| GTAGAAGGAGTAAAAGCTAT+CGG | + | chr3.4:97888206-97888225 | MS.gene064761:intron | 35.0% | |
| GTGTATGATTATCTACGAGT+TGG | - | chr3.4:97887421-97887440 | None:intergenic | 35.0% | |
| TAAATTGGTTGTGCTGTACA+TGG | + | chr3.4:97888023-97888042 | MS.gene064761:intron | 35.0% | |
| TTCTCGTTCCAAAGTTAAGA+GGG | + | chr3.4:97885777-97885796 | MS.gene064761:CDS | 35.0% | |
| TTCTTATCTTGTCTGGTAGA+AGG | + | chr3.4:97888191-97888210 | MS.gene064761:intron | 35.0% | |
| ! | CATGCTATTATTTTCCTCAC+AGG | + | chr3.4:97887163-97887182 | MS.gene064761:intron | 35.0% |
| ! | TCGATTTTGTACCTTGGTTT+TGG | - | chr3.4:97885869-97885888 | None:intergenic | 35.0% |
| !! | TTAGAGTATTGTGCTGTGTT+AGG | + | chr3.4:97885955-97885974 | MS.gene064761:intron | 35.0% |
| !!! | AGTTTTGAACCCTTAGAAAG+GGG | - | chr3.4:97885706-97885725 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAACCCTTAGAAA+GGG | - | chr3.4:97885707-97885726 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGAACCCTTAGAA+AGG | - | chr3.4:97885708-97885727 | None:intergenic | 35.0% |
| !!! | TTGTCGTCTTGTTTTTTCAC+AGG | - | chr3.4:97885637-97885656 | None:intergenic | 35.0% |
| !!! | TTGTGACTTTTGAGACTGTT+TGG | + | chr3.4:97886377-97886396 | MS.gene064761:intron | 35.0% |
| AAAAAAGCCGCAAAACCCAA+CGG | + | chr3.4:97885676-97885695 | MS.gene064761:CDS | 40.0% | |
| AAACCAATTCTACACCGTAC+AGG | - | chr3.4:97886914-97886933 | None:intergenic | 40.0% | |
| AAATGCATAAGGCCTGATAG+TGG | - | chr3.4:97887482-97887501 | None:intergenic | 40.0% | |
| AACCAATTCTACACCGTACA+GGG | - | chr3.4:97886913-97886932 | None:intergenic | 40.0% | |
| AACGGTAAACCCCTTTCTAA+GGG | + | chr3.4:97885694-97885713 | MS.gene064761:CDS | 40.0% | |
| AAGATAAGAAAAGGCGGGAA+AGG | - | chr3.4:97888181-97888200 | None:intergenic | 40.0% | |
| AATGACATGCCAACTGTGAA+TGG | + | chr3.4:97886772-97886791 | MS.gene064761:intron | 40.0% | |
| ACAGCAGTTACAGACTTAAC+AGG | - | chr3.4:97888469-97888488 | None:intergenic | 40.0% | |
| ACAGGTTTCGAATCTTCAGA+AGG | - | chr3.4:97885619-97885638 | None:intergenic | 40.0% | |
| ACTTTCTTTGCCACCTCTTT+AGG | - | chr3.4:97888400-97888419 | None:intergenic | 40.0% | |
| AGGAAAATTCAATCTGCAGC+AGG | - | chr3.4:97888161-97888180 | None:intergenic | 40.0% | |
| AGTGAGCTTAATTCCCTGTA+CGG | + | chr3.4:97886897-97886916 | MS.gene064761:intron | 40.0% | |
| ATATGAGGGGATGGAATAAC+AGG | - | chr3.4:97887998-97888017 | None:intergenic | 40.0% | |
| ATCTGAAAATTCGAGCTCTG+AGG | + | chr3.4:97888621-97888640 | MS.gene064761:CDS | 40.0% | |
| ATTGTTATGCAAACCTCTGC+AGG | - | chr3.4:97886103-97886122 | None:intergenic | 40.0% | |
| CAAAGAGTGATGTCAGATCT+AGG | - | chr3.4:97887558-97887577 | None:intergenic | 40.0% | |
| CAAAGTTAAGAGGGAACTCA+AGG | + | chr3.4:97885786-97885805 | MS.gene064761:CDS | 40.0% | |
| CAAATCTGGTGAGTTCTCAA+CGG | + | chr3.4:97886261-97886280 | MS.gene064761:intron | 40.0% | |
| CAGACAAGATAAGAAAAGGC+GGG | - | chr3.4:97888186-97888205 | None:intergenic | 40.0% | |
| CCAGACAAGATAAGAAAAGG+CGG | - | chr3.4:97888187-97888206 | None:intergenic | 40.0% | |
| CCTGAAAACAAAACTATGCG+AGG | + | chr3.4:97887321-97887340 | MS.gene064761:intron | 40.0% | |
| CTCTCAAATGATGGTTGTGA+TGG | + | chr3.4:97887297-97887316 | MS.gene064761:intron | 40.0% | |
| CTTCTCGTTCCAAAGTTAAG+AGG | + | chr3.4:97885776-97885795 | MS.gene064761:CDS | 40.0% | |
| CTTGAGTTCCCTCTTAACTT+TGG | - | chr3.4:97885788-97885807 | None:intergenic | 40.0% | |
| GAAGGTAAAGAAAGAGGAAG+AGG | + | chr3.4:97886006-97886025 | MS.gene064761:CDS | 40.0% | |
| GGAGAATACACAGAAAAAGG+TGG | - | chr3.4:97887933-97887952 | None:intergenic | 40.0% | |
| GTTAGGTAATTGCAACTGCA+AGG | - | chr3.4:97887722-97887741 | None:intergenic | 40.0% | |
| TAATATATTTCCAGGGGCCT+GGG | - | chr3.4:97887115-97887134 | None:intergenic | 40.0% | |
| TATGAGGGGATGGAATAACA+GGG | - | chr3.4:97887997-97888016 | None:intergenic | 40.0% | |
| TCAAACCTCCAAATGCCTTA+GGG | + | chr3.4:97886862-97886881 | MS.gene064761:intron | 40.0% | |
| TCAGATTTGTGCTTCTTGGT+TGG | - | chr3.4:97888607-97888626 | None:intergenic | 40.0% | |
| TGCAGTTGCAATTACCTAAC+AGG | + | chr3.4:97887722-97887741 | MS.gene064761:intron | 40.0% | |
| TGCTTTGATGTGGAGTTTGT+TGG | - | chr3.4:97888565-97888584 | None:intergenic | 40.0% | |
| TTAATATATTTCCAGGGGCC+TGG | - | chr3.4:97887116-97887135 | None:intergenic | 40.0% | |
| TTAGAAAGGGGTTTACCGTT+GGG | - | chr3.4:97885694-97885713 | None:intergenic | 40.0% | |
| TTCAAACCTCCAAATGCCTT+AGG | + | chr3.4:97886861-97886880 | MS.gene064761:intron | 40.0% | |
| TTTGTTCCACGACACTTGTT+TGG | + | chr3.4:97886825-97886844 | MS.gene064761:intron | 40.0% | |
| ! | AAATGAGACCCTAAGGCATT+TGG | - | chr3.4:97886873-97886892 | None:intergenic | 40.0% |
| ! | ATGGTGATAGTGTTCTTGCA+AGG | - | chr3.4:97886640-97886659 | None:intergenic | 40.0% |
| ! | GGTTGTTGTTAGAGAAACGA+AGG | + | chr3.4:97886027-97886046 | MS.gene064761:CDS | 40.0% |
| ! | GGTTTTGCTGATGTGTACAA+AGG | + | chr3.4:97886929-97886948 | MS.gene064761:intron | 40.0% |
| ! | TCTGTCCTTAAATTGGCTTC+TGG | - | chr3.4:97887245-97887264 | None:intergenic | 40.0% |
| ! | TGGTGATAGTGTTCTTGCAA+GGG | - | chr3.4:97886639-97886658 | None:intergenic | 40.0% |
| ! | TTATCTACGAGTTGGAATGC+TGG | - | chr3.4:97887413-97887432 | None:intergenic | 40.0% |
| !! | ATTTGTGCCATTTCGCTAGT+TGG | - | chr3.4:97886246-97886265 | None:intergenic | 40.0% |
| !!! | CCTCGCATAGTTTTGTTTTC+AGG | - | chr3.4:97887324-97887343 | None:intergenic | 40.0% |
| AAAGAAAGCTCTGCAGCAGA+AGG | + | chr3.4:97888435-97888454 | MS.gene064761:CDS | 45.0% | |
| AATTGCATGCCACCACTATC+AGG | + | chr3.4:97887467-97887486 | MS.gene064761:intron | 45.0% | |
| AGTTGTCGTAACCCAGTTAC+TGG | + | chr3.4:97888072-97888091 | MS.gene064761:intron | 45.0% | |
| ATGAGGGGATGGAATAACAG+GGG | - | chr3.4:97887996-97888015 | None:intergenic | 45.0% | |
| CAACGGTAAACCCCTTTCTA+AGG | + | chr3.4:97885693-97885712 | MS.gene064761:CDS | 45.0% | |
| CTAGCGAAATGGCACAAATC+TGG | + | chr3.4:97886247-97886266 | MS.gene064761:CDS | 45.0% | |
| CTTAGAAAGGGGTTTACCGT+TGG | - | chr3.4:97885695-97885714 | None:intergenic | 45.0% | |
| GGAGTTTGTCTGCTTTGATG+TGG | - | chr3.4:97888575-97888594 | None:intergenic | 45.0% | |
| GGGAAGAGAGACAAGAAAAG+AGG | - | chr3.4:97887976-97887995 | None:intergenic | 45.0% | |
| GTCTCGTAGAAAACCCTAGA+AGG | - | chr3.4:97886207-97886226 | None:intergenic | 45.0% | |
| GTTTCTCAGTCTCTTCTGAG+TGG | - | chr3.4:97886702-97886721 | None:intergenic | 45.0% | |
| TAGAACCGCTAGGAACTACA+GGG | - | chr3.4:97887447-97887466 | None:intergenic | 45.0% | |
| TTAGAACCGCTAGGAACTAC+AGG | - | chr3.4:97887448-97887467 | None:intergenic | 45.0% | |
| TTCCCTGTACGGTGTAGAAT+TGG | + | chr3.4:97886908-97886927 | MS.gene064761:intron | 45.0% | |
| TTTGTCATCGTCGTCTTCGT+CGG | - | chr3.4:97885827-97885846 | None:intergenic | 45.0% | |
| ! | ATCAGGCTTGCTTCCTAAAG+AGG | + | chr3.4:97888384-97888403 | MS.gene064761:CDS | 45.0% |
| ! | CCGCCTTTTCTTATCTTGTC+TGG | + | chr3.4:97888184-97888203 | MS.gene064761:intron | 45.0% |
| ! | GCATGCAATTTAGAACCGCT+AGG | - | chr3.4:97887457-97887476 | None:intergenic | 45.0% |
| ! | TACAGTCCAAACAAGTGTCG+TGG | - | chr3.4:97886834-97886853 | None:intergenic | 45.0% |
| ! | TGATTGCAACTGCAGGTTGA+TGG | + | chr3.4:97888360-97888379 | MS.gene064761:intron | 45.0% |
| ! | TGTGCTGTGTTAGGTTGTGA+AGG | + | chr3.4:97885964-97885983 | MS.gene064761:intron | 45.0% |
| ! | TTTGGAACGAGAAGCTGAAG+TGG | - | chr3.4:97885770-97885789 | None:intergenic | 45.0% |
| !! | AACTGCAGGTTGATGGAATC+AGG | + | chr3.4:97888367-97888386 | MS.gene064761:intron | 45.0% |
| !! | ATAAAAAAAAAAAAAAAACT+AGG | - | chr3.4:97885902-97885921 | None:intergenic | 5.0% |
| GTTATGCAAACCTCTGCAGG+TGG | - | chr3.4:97886100-97886119 | None:intergenic | 50.0% | |
| TATAACACCAAGCCTAGCCC+AGG | + | chr3.4:97887095-97887114 | MS.gene064761:intron | 50.0% | |
| TCTCCATGACCTTTACCCCA+AGG | + | chr3.4:97887948-97887967 | MS.gene064761:intron | 50.0% | |
| ! | ACGGAAGAATTTGGGGTAGC+TGG | - | chr3.4:97888532-97888551 | None:intergenic | 50.0% |
| ! | AGGCTTGCTTCCTAAAGAGG+TGG | + | chr3.4:97888387-97888406 | MS.gene064761:CDS | 50.0% |
| ! | CGGAAGAATTTGGGGTAGCT+GGG | - | chr3.4:97888531-97888550 | None:intergenic | 50.0% |
| ! | GCGTTACTGATTGCAACTGC+AGG | + | chr3.4:97888353-97888372 | MS.gene064761:intron | 50.0% |
| ! | GGGTTTACCGTTGGGTTTTG+CGG | - | chr3.4:97885686-97885705 | None:intergenic | 50.0% |
| ! | TGAGACCCTAAGGCATTTGG+AGG | - | chr3.4:97886870-97886889 | None:intergenic | 50.0% |
| !! | ACAAGAAAAGAGGCGCCTTG+GGG | - | chr3.4:97887966-97887985 | None:intergenic | 50.0% |
| !! | AGACAAGAAAAGAGGCGCCT+TGG | - | chr3.4:97887968-97887987 | None:intergenic | 50.0% |
| !! | CTTCTTGGTTGGCTTCGATG+TGG | - | chr3.4:97888596-97888615 | None:intergenic | 50.0% |
| !! | GACAAGAAAAGAGGCGCCTT+GGG | - | chr3.4:97887967-97887986 | None:intergenic | 50.0% |
| !! | TGCATAAGGCCTGATAGTGG+TGG | - | chr3.4:97887479-97887498 | None:intergenic | 50.0% |
| AGCTGAAGTGGCACGAGGAA+TGG | - | chr3.4:97885758-97885777 | None:intergenic | 55.0% | |
| GAAACGTGATCCACCTGCAG+AGG | + | chr3.4:97886087-97886106 | MS.gene064761:CDS | 55.0% | |
| GCTGAAGTGGCACGAGGAAT+GGG | - | chr3.4:97885757-97885776 | None:intergenic | 55.0% | |
| GGTGGATCACGTTTCTGTCC+AGG | - | chr3.4:97886082-97886101 | None:intergenic | 55.0% | |
| !! | AAAGAGGCGCCTTGGGGTAA+AGG | - | chr3.4:97887960-97887979 | None:intergenic | 55.0% |
| ACCGCTAGGAACTACAGGGC+CGG | - | chr3.4:97887443-97887462 | None:intergenic | 60.0% | |
| ACCGGCCCTGTAGTTCCTAG+CGG | + | chr3.4:97887439-97887458 | MS.gene064761:intron | 60.0% | |
| CGAGAAGCTGAAGTGGCACG+AGG | - | chr3.4:97885763-97885782 | None:intergenic | 60.0% | |
| GCGCCTTGGGGTAAAGGTCA+TGG | - | chr3.4:97887954-97887973 | None:intergenic | 60.0% | |
| TATTTCCAGGGGCCTGGGCT+AGG | - | chr3.4:97887110-97887129 | None:intergenic | 60.0% | |
| ! | GTGGCACGAGGAATGGGTTC+AGG | - | chr3.4:97885751-97885770 | None:intergenic | 60.0% |
| CCAAGCCTAGCCCAGGCCCC+TGG | + | chr3.4:97887102-97887121 | MS.gene064761:intron | 75.0% | |
| ! | CCAGGGGCCTGGGCTAGGCT+TGG | - | chr3.4:97887105-97887124 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 97885613 | 97888702 | 97885613 | ID=MS.gene064761 |
| chr3.4 | mRNA | 97885613 | 97888702 | 97885613 | ID=MS.gene064761.t1;Parent=MS.gene064761 |
| chr3.4 | exon | 97885613 | 97885876 | 97885613 | ID=MS.gene064761.t1.exon1;Parent=MS.gene064761.t1 |
| chr3.4 | CDS | 97885613 | 97885876 | 97885613 | ID=cds.MS.gene064761.t1;Parent=MS.gene064761.t1 |
| chr3.4 | exon | 97885977 | 97886108 | 97885977 | ID=MS.gene064761.t1.exon2;Parent=MS.gene064761.t1 |
| chr3.4 | CDS | 97885977 | 97886108 | 97885977 | ID=cds.MS.gene064761.t1;Parent=MS.gene064761.t1 |
| chr3.4 | exon | 97886198 | 97886268 | 97886198 | ID=MS.gene064761.t1.exon3;Parent=MS.gene064761.t1 |
| chr3.4 | CDS | 97886198 | 97886268 | 97886198 | ID=cds.MS.gene064761.t1;Parent=MS.gene064761.t1 |
| chr3.4 | exon | 97888375 | 97888702 | 97888375 | ID=MS.gene064761.t1.exon4;Parent=MS.gene064761.t1 |
| chr3.4 | CDS | 97888375 | 97888702 | 97888375 | ID=cds.MS.gene064761.t1;Parent=MS.gene064761.t1 |
| Gene Sequence |
| Protein sequence |
