AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06001


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06001.t1 MTR_8g098850 100.000 177 0 0 1 177 1 177 6.13e-128 356
MS.gene06001.t1 MTR_5g010025 93.889 180 8 1 1 177 28 207 1.53e-120 339
MS.gene06001.t1 MTR_8g098850 100.000 132 0 0 46 177 1 132 2.28e-90 260
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06001.t1 AT4G25740 82.237 152 25 1 1 152 1 150 1.64e-79 234
MS.gene06001.t1 AT5G52650 82.468 154 25 1 1 152 1 154 4.09e-74 220
MS.gene06001.t1 AT5G41520 75.817 153 31 5 1 150 1 150 6.56e-70 210
MS.gene06001.t1 AT4G25740 64.706 170 30 1 1 170 1 140 6.91e-60 183
MS.gene06001.t1 AT5G41520 75.701 107 21 4 46 150 1 104 7.82e-43 139

Find 64 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTAATCACCTGCAAATT+TGG 0.141151 4.1:-5429607 None:intergenic
GGTCGTGGATCTGGTGGTTT+TGG 0.201005 4.1:+5431323 MS.gene06001:CDS
TGCCAAATTGAAATCCTTCT+TGG 0.227664 4.1:-5429563 None:intergenic
TCTCCTCTCCCCTTCAAATC+TGG 0.263606 4.1:-5429921 None:intergenic
GGAGGTCCTCGTGGTGAATT+TGG 0.264246 4.1:+5429971 MS.gene06001:CDS
TTGCTTGGATGAATTATTAC+TGG 0.274951 4.1:+5429671 MS.gene06001:CDS
TGCCAAGAAGGATTTCAATT+TGG 0.277902 4.1:+5429561 MS.gene06001:CDS
TTTGAAGGGGAGAGGAGATT+TGG 0.304539 4.1:+5429926 MS.gene06001:CDS
AAATTTGGAACATCGATTTC+TGG 0.305282 4.1:-5429592 None:intergenic
CTGATTACAGACCCTCATTT+GGG 0.309337 4.1:+5430017 MS.gene06001:CDS
CAGGGTCCTGGTGGAAGGCC+TGG 0.329758 4.1:+5431296 MS.gene06001:intron
GCTGATTACAGACCCTCATT+TGG 0.333812 4.1:+5430016 MS.gene06001:CDS
AAGCCACCTGGTAGACCTTT+TGG 0.340230 4.1:+5429781 MS.gene06001:CDS
TGTCTTGTTGTGCAGGGTCC+TGG 0.359491 4.1:+5431284 MS.gene06001:intron
CCTGGATTTGGTCGTGGATC+TGG 0.375183 4.1:+5431314 MS.gene06001:CDS
CCTGGTGGAAGGCCTGGATT+TGG 0.398371 4.1:+5431302 MS.gene06001:CDS
AATCGATGTTCCAAATTTGC+AGG 0.408613 4.1:+5429597 MS.gene06001:CDS
CTCCTCTCCCCTTCAAATCT+GGG 0.426727 4.1:-5429920 None:intergenic
GCTTGTTTCTTCAAAGTAGC+AGG 0.433371 4.1:-5429757 None:intergenic
TTGTGCAGGGTCCTGGTGGA+AGG 0.448944 4.1:+5431291 MS.gene06001:intron
CTTTAAGCATCTGAGCTAGT+TGG 0.449096 4.1:-5431353 None:intergenic
GAAGGGGAGAGGAGATTTGG+TGG 0.472199 4.1:+5429929 MS.gene06001:CDS
TTATGCAGAGCTTCAAATCA+AGG 0.477684 4.1:+5429629 MS.gene06001:CDS
AGGGGTCCACCCAGATTTGA+AGG 0.489080 4.1:+5429911 MS.gene06001:intron
GGTACTTGCAGATCTCTTTG+CGG 0.502239 4.1:-5429412 None:intergenic
AATATAATATACCTTGGAAA+AGG 0.503793 4.1:-5429433 None:intergenic
TACTGGTTTCTCACTAATGA+CGG 0.504599 4.1:+5429688 MS.gene06001:CDS
CAATAAGCTTACCCCAAATG+AGG 0.509168 4.1:-5430029 None:intergenic
GTCCACAGGGTGATCGTCCT+AGG 0.525900 4.1:+5429806 MS.gene06001:CDS
TAAGCATCTGAGCTAGTTGG+AGG 0.527305 4.1:-5431350 None:intergenic
CACCCAGATTTGAAGGGGAG+AGG 0.528752 4.1:+5429918 MS.gene06001:CDS
ATGTTAGAGAAACCTTTGCT+TGG 0.529285 4.1:+5429656 MS.gene06001:CDS
GGAAGGCCTGGATTTGGTCG+TGG 0.535608 4.1:+5431308 MS.gene06001:CDS
CCAGATCCACGACCAAATCC+AGG 0.536843 4.1:-5431314 None:intergenic
TCACCCTGTGGACCACCAAA+AGG 0.552245 4.1:-5429796 None:intergenic
AATGAGGGTCTGTAATCAGC+AGG 0.552369 4.1:-5430013 None:intergenic
GTAATAATTCATCCAAGCAA+AGG 0.557485 4.1:-5429668 None:intergenic
CTTGTTGTGCAGGGTCCTGG+TGG 0.561938 4.1:+5431287 MS.gene06001:intron
CCAAATCCAGGCCTTCCACC+AGG 0.566613 4.1:-5431302 None:intergenic
TGGTGAATTTGGAGGAGACA+AGG 0.568317 4.1:+5429982 MS.gene06001:CDS
GGGTGTATGCTATGCCAAGA+AGG 0.572773 4.1:+5429549 MS.gene06001:CDS
GATTTGGTGGTGACCGTGAT+GGG 0.582420 4.1:+5429942 MS.gene06001:CDS
GGGGTCCACCCAGATTTGAA+GGG 0.582776 4.1:+5429912 MS.gene06001:intron
GTAGCAGGAACAATCTCAGA+AGG 0.584325 4.1:-5429742 None:intergenic
CTCTCCCCTTCAAATCTGGG+TGG 0.586327 4.1:-5429917 None:intergenic
GGATTTGGTCGTGGATCTGG+TGG 0.587952 4.1:+5431317 MS.gene06001:CDS
AAGAAACAAGCTAAGCCACC+TGG 0.590290 4.1:+5429769 MS.gene06001:CDS
GGACCACCAAAAGGTCTACC+AGG 0.594043 4.1:-5429787 None:intergenic
AATAAGCTTACCCCAAATGA+GGG 0.606777 4.1:-5430028 None:intergenic
GGTCCTCGTGGTGAATTTGG+AGG 0.607108 4.1:+5429974 MS.gene06001:CDS
TATGCAGAGCTTCAAATCAA+GGG 0.617426 4.1:+5429630 MS.gene06001:CDS
GACCTCCACGGTACCCATCA+CGG 0.617977 4.1:-5429955 None:intergenic
GGTGACCGTGATGGGTACCG+TGG 0.630160 4.1:+5429950 MS.gene06001:CDS
AGATTTGGTGGTGACCGTGA+TGG 0.637024 4.1:+5429941 MS.gene06001:CDS
GGTGAATTTGGAGGAGACAA+GGG 0.645452 4.1:+5429983 MS.gene06001:CDS
GGGTCCACCCAGATTTGAAG+GGG 0.646728 4.1:+5429913 MS.gene06001:CDS
TGATTACAGACCCTCATTTG+GGG 0.655373 4.1:+5430018 MS.gene06001:CDS
GACCGTGATGGGTACCGTGG+AGG 0.672660 4.1:+5429953 MS.gene06001:CDS
ATTCACCACGAGGACCTCCA+CGG 0.674159 4.1:-5429967 None:intergenic
GGGTACCGTGGAGGTCCTCG+TGG 0.696695 4.1:+5429962 MS.gene06001:CDS
GAATTTGGAGGAGACAAGGG+AGG 0.716593 4.1:+5429986 MS.gene06001:CDS
TACCTAGGACGATCACCCTG+TGG 0.729018 4.1:-5429808 None:intergenic
CCACCAAAAGGTCTACCAGG+TGG 0.744640 4.1:-5429784 None:intergenic
TCTCCTCCAAATTCACCACG+AGG 0.768981 4.1:-5429977 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATTTATTTATCAACA+AGG - chr4.1:5430807-5430826 None:intergenic 10.0%
!! TTGTTAAAAAATTTCAATTA+TGG + chr4.1:5430840-5430859 MS.gene06001:intron 10.0%
!! AGTAAATTAAAATACTACAT+TGG - chr4.1:5431072-5431091 None:intergenic 15.0%
!! TAAATGATTAAGGTTATTAT+AGG - chr4.1:5430307-5430326 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG - chr4.1:5430317-5430336 None:intergenic 15.0%
!!! GTATTTTAATTTACTTATTC+TGG + chr4.1:5431077-5431096 MS.gene06001:intron 15.0%
!!! TGTTTAAATTTTTCAAGTAT+GGG + chr4.1:5430774-5430793 MS.gene06001:intron 15.0%
!!! TTGTTTAAATTTTTCAAGTA+TGG + chr4.1:5430773-5430792 MS.gene06001:intron 15.0%
!! AATATAATATACCTTGGAAA+AGG - chr4.1:5429436-5429455 None:intergenic 20.0%
!! GTGTTAAATATAATATACCT+TGG - chr4.1:5429442-5429461 None:intergenic 20.0%
!! TAAATATATAGGGGTAATAT+AGG + chr4.1:5430359-5430378 MS.gene06001:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG - chr4.1:5430221-5430240 None:intergenic 20.0%
!! TCATATTCATAATCATAACT+AGG + chr4.1:5431147-5431166 MS.gene06001:intron 20.0%
!! TTGAAAAATTTAAACAAGTC+AGG - chr4.1:5430770-5430789 None:intergenic 20.0%
!!! CTGTTGTTTATTTTATTGTA+CGG + chr4.1:5429845-5429864 MS.gene06001:intron 20.0%
!!! TTTTAATTTACTTATTCTGG+TGG + chr4.1:5431080-5431099 MS.gene06001:intron 20.0%
! ATAAATCCATAACATGTCAT+CGG - chr4.1:5430697-5430716 None:intergenic 25.0%
! ATGTGACAATTAAAAAGGAA+CGG - chr4.1:5430216-5430235 None:intergenic 25.0%
! CAAAAGAGAAATCTTGTATT+CGG - chr4.1:5430746-5430765 None:intergenic 25.0%
! CTCTCTGCAATAAATATATA+GGG + chr4.1:5430349-5430368 MS.gene06001:intron 25.0%
! GAAATCATATTCATAGGAAA+AGG - chr4.1:5431044-5431063 None:intergenic 25.0%
! GTGAATGAAATCATATTCAT+AGG - chr4.1:5431050-5431069 None:intergenic 25.0%
! TCAACCAAAAAAAAAACAGT+GGG - chr4.1:5431242-5431261 None:intergenic 25.0%
! TCTCTCTGCAATAAATATAT+AGG + chr4.1:5430348-5430367 MS.gene06001:intron 25.0%
! TCTCTGCAATAAATATATAG+GGG + chr4.1:5430350-5430369 MS.gene06001:intron 25.0%
! TTCAACCAAAAAAAAAACAG+TGG - chr4.1:5431243-5431262 None:intergenic 25.0%
!!! AAAATGGTTGATTTGTGTAT+AGG + chr4.1:5429891-5429910 MS.gene06001:intron 25.0%
!!! AAATGGTTGATTTGTGTATA+GGG + chr4.1:5429892-5429911 MS.gene06001:intron 25.0%
!!! AGTAAAAGTATTTGTTGTCT+TGG - chr4.1:5430257-5430276 None:intergenic 25.0%
AACCCTAGAATGAAGAATAA+GGG - chr4.1:5429326-5429345 None:intergenic 30.0%
AAGTGACAGTTATAAAGGAA+CGG + chr4.1:5430451-5430470 MS.gene06001:intron 30.0%
AATAGTGCTTACTTTAAGCA+CGG + chr4.1:5430611-5430630 MS.gene06001:intron 30.0%
AGTACAATTGTATACAGGAA+TGG - chr4.1:5431202-5431221 None:intergenic 30.0%
ATCCCTTATTCTTCATTCTA+GGG + chr4.1:5429321-5429340 MS.gene06001:intron 30.0%
ATGATAATACCAATGCTAAC+TGG - chr4.1:5430524-5430543 None:intergenic 30.0%
CTACAATTACATTCGAAGTT+GGG + chr4.1:5430970-5430989 MS.gene06001:intron 30.0%
GAAATGAAGTGATAATACCT+AGG - chr4.1:5429826-5429845 None:intergenic 30.0%
GTAATAATTCATCCAAGCAA+AGG - chr4.1:5429671-5429690 None:intergenic 30.0%
TATTCATCAACAACGCAATT+GGG - chr4.1:5430178-5430197 None:intergenic 30.0%
TCTACAATTACATTCGAAGT+TGG + chr4.1:5430969-5430988 MS.gene06001:intron 30.0%
TCTGAATTGTTGAATGTAGA+GGG + chr4.1:5429529-5429548 MS.gene06001:intron 30.0%
TGCAAAAGTGACAGTTATAA+AGG + chr4.1:5430446-5430465 MS.gene06001:intron 30.0%
TTATTCATCAACAACGCAAT+TGG - chr4.1:5430179-5430198 None:intergenic 30.0%
TTCTGAATTGTTGAATGTAG+AGG + chr4.1:5429528-5429547 MS.gene06001:intron 30.0%
TTGCTTGGATGAATTATTAC+TGG + chr4.1:5429671-5429690 MS.gene06001:CDS 30.0%
! ACAATTGTACTCTCCTATTT+TGG + chr4.1:5431211-5431230 MS.gene06001:intron 30.0%
! CAATTGTACTCTCCTATTTT+GGG + chr4.1:5431212-5431231 MS.gene06001:intron 30.0%
! GTTCAAAGCATCATTAAATG+TGG - chr4.1:5430390-5430409 None:intergenic 30.0%
! TTACGTGGGTTATTGAAAAA+TGG + chr4.1:5429875-5429894 MS.gene06001:intron 30.0%
!! AAATTTGGAACATCGATTTC+TGG - chr4.1:5429595-5429614 None:intergenic 30.0%
!! AATGGTTGATTTGTGTATAG+GGG + chr4.1:5429893-5429912 MS.gene06001:intron 30.0%
!! TTTTGTCAGCTTCAAGTTTT+GGG + chr4.1:5430913-5430932 MS.gene06001:intron 30.0%
!! TTTTTGTCAGCTTCAAGTTT+TGG + chr4.1:5430912-5430931 MS.gene06001:intron 30.0%
!!! TAGTCCCACTGTTTTTTTTT+TGG + chr4.1:5431235-5431254 MS.gene06001:intron 30.0%
!!! TGTACGGTTTTTTATTACGT+GGG + chr4.1:5429861-5429880 MS.gene06001:intron 30.0%
!!! TTGTACGGTTTTTTATTACG+TGG + chr4.1:5429860-5429879 MS.gene06001:intron 30.0%
AATAAGCTTACCCCAAATGA+GGG - chr4.1:5430031-5430050 None:intergenic 35.0%
AATACCAATGCTAACTGGAA+CGG - chr4.1:5430519-5430538 None:intergenic 35.0%
AATCGATGTTCCAAATTTGC+AGG + chr4.1:5429597-5429616 MS.gene06001:CDS 35.0%
AGCTTAATCACCTGCAAATT+TGG - chr4.1:5429610-5429629 None:intergenic 35.0%
ATAGAACAAGTCTGAATTGC+AGG - chr4.1:5430943-5430962 None:intergenic 35.0%
ATGTTAGAGAAACCTTTGCT+TGG + chr4.1:5429656-5429675 MS.gene06001:CDS 35.0%
CATCCCTTATTCTTCATTCT+AGG + chr4.1:5429320-5429339 MS.gene06001:intron 35.0%
CTCAATGTTGCATTTGTTTC+TGG + chr4.1:5430057-5430076 MS.gene06001:intron 35.0%
GAACCCTAGAATGAAGAATA+AGG - chr4.1:5429327-5429346 None:intergenic 35.0%
GACAATTAAAAAGGAACGGA+GGG - chr4.1:5430212-5430231 None:intergenic 35.0%
TAGAACAAGTCTGAATTGCA+GGG - chr4.1:5430942-5430961 None:intergenic 35.0%
TATGCAGAGCTTCAAATCAA+GGG + chr4.1:5429630-5429649 MS.gene06001:CDS 35.0%
TCATATGATGCTCAATTGTG+TGG + chr4.1:5430552-5430571 MS.gene06001:intron 35.0%
TGACAATTAAAAAGGAACGG+AGG - chr4.1:5430213-5430232 None:intergenic 35.0%
TGCCAAATTGAAATCCTTCT+TGG - chr4.1:5429566-5429585 None:intergenic 35.0%
TGCCAAGAAGGATTTCAATT+TGG + chr4.1:5429561-5429580 MS.gene06001:CDS 35.0%
TTATGCAGAGCTTCAAATCA+AGG + chr4.1:5429629-5429648 MS.gene06001:CDS 35.0%
! AGGAGAGTACAATTGTATAC+AGG - chr4.1:5431207-5431226 None:intergenic 35.0%
!! TACTGGTTTCTCACTAATGA+CGG + chr4.1:5429688-5429707 MS.gene06001:CDS 35.0%
AATGTAATGTCTTGCGAAGC+AGG + chr4.1:5430488-5430507 MS.gene06001:intron 40.0%
CAATAAGCTTACCCCAAATG+AGG - chr4.1:5430032-5430051 None:intergenic 40.0%
CTGATTACAGACCCTCATTT+GGG + chr4.1:5430017-5430036 MS.gene06001:CDS 40.0%
CTTGTATTCGGCAGTCAAAA+AGG - chr4.1:5430734-5430753 None:intergenic 40.0%
GACAGTTATAAAGGAACGGA+GGG + chr4.1:5430455-5430474 MS.gene06001:intron 40.0%
TCTTGTCCGATGACATGTTA+TGG + chr4.1:5430688-5430707 MS.gene06001:intron 40.0%
TCTTTGAATTACGTGTGTCC+TGG + chr4.1:5430638-5430657 MS.gene06001:intron 40.0%
TGACAGTTATAAAGGAACGG+AGG + chr4.1:5430454-5430473 MS.gene06001:intron 40.0%
TGATTACAGACCCTCATTTG+GGG + chr4.1:5430018-5430037 MS.gene06001:CDS 40.0%
! ATCTGCAAGTACCTTTTCCA+AGG + chr4.1:5429422-5429441 MS.gene06001:CDS 40.0%
! GCTTGTTTCTTCAAAGTAGC+AGG - chr4.1:5429760-5429779 None:intergenic 40.0%
!! ATGTTGCATTTGTTTCTGGC+TGG + chr4.1:5430061-5430080 MS.gene06001:intron 40.0%
AAGAAACAAGCTAAGCCACC+TGG + chr4.1:5429769-5429788 MS.gene06001:CDS 45.0%
AATGAGGGTCTGTAATCAGC+AGG - chr4.1:5430016-5430035 None:intergenic 45.0%
AATTACGTGTGTCCTGGTGT+TGG + chr4.1:5430644-5430663 MS.gene06001:intron 45.0%
ACAGTGGGACTACCCAAAAT+AGG - chr4.1:5431227-5431246 None:intergenic 45.0%
CAATGCTAACTGGAACGGAA+CGG - chr4.1:5430514-5430533 None:intergenic 45.0%
GCTGATTACAGACCCTCATT+TGG + chr4.1:5430016-5430035 MS.gene06001:CDS 45.0%
GGTACTTGCAGATCTCTTTG+CGG - chr4.1:5429415-5429434 None:intergenic 45.0%
GGTGAATTTGGAGGAGACAA+GGG + chr4.1:5429983-5430002 MS.gene06001:CDS 45.0%
GTAGCAGGAACAATCTCAGA+AGG - chr4.1:5429745-5429764 None:intergenic 45.0%
TAAGCATCTGAGCTAGTTGG+AGG - chr4.1:5431353-5431372 None:intergenic 45.0%
TGGTGAATTTGGAGGAGACA+AGG + chr4.1:5429982-5430001 MS.gene06001:CDS 45.0%
TTTGAAGGGGAGAGGAGATT+TGG + chr4.1:5429926-5429945 MS.gene06001:CDS 45.0%
CGTTCCGTTCCAGTTAGCAT+TGG + chr4.1:5430512-5430531 MS.gene06001:intron 50.0%
CTCCTCTCCCCTTCAAATCT+GGG - chr4.1:5429923-5429942 None:intergenic 50.0%
GAATTTGGAGGAGACAAGGG+AGG + chr4.1:5429986-5430005 MS.gene06001:CDS 50.0%
GGGTGTATGCTATGCCAAGA+AGG + chr4.1:5429549-5429568 MS.gene06001:CDS 50.0%
TCTCCTCCAAATTCACCACG+AGG - chr4.1:5429980-5429999 None:intergenic 50.0%
TCTCCTCTCCCCTTCAAATC+TGG - chr4.1:5429924-5429943 None:intergenic 50.0%
TGACACTACATGCCAACACC+AGG - chr4.1:5430659-5430678 None:intergenic 50.0%
! AAGCCACCTGGTAGACCTTT+TGG + chr4.1:5429781-5429800 MS.gene06001:CDS 50.0%
! CTGAGCTGTCTTGTTGTGCA+GGG + chr4.1:5431278-5431297 MS.gene06001:intron 50.0%
! GTCGTGGATCTGGTGGTTTT+GGG + chr4.1:5431324-5431343 MS.gene06001:CDS 50.0%
! TCTGAGCTGTCTTGTTGTGC+AGG + chr4.1:5431277-5431296 MS.gene06001:intron 50.0%
!! AGACCTTTTGGTGGTCCACA+GGG + chr4.1:5429793-5429812 MS.gene06001:CDS 50.0%
!! AGATTTGGTGGTGACCGTGA+TGG + chr4.1:5429941-5429960 MS.gene06001:CDS 50.0%
!! GATTTGGTGGTGACCGTGAT+GGG + chr4.1:5429942-5429961 MS.gene06001:CDS 50.0%
!! TAGACCTTTTGGTGGTCCAC+AGG + chr4.1:5429792-5429811 MS.gene06001:CDS 50.0%
!! TCGTGGATCTGGTGGTTTTG+GGG + chr4.1:5431325-5431344 MS.gene06001:CDS 50.0%
AGGGGTCCACCCAGATTTGA+AGG + chr4.1:5429911-5429930 MS.gene06001:intron 55.0%
ATTCACCACGAGGACCTCCA+CGG - chr4.1:5429970-5429989 None:intergenic 55.0%
CACCCAGATTTGAAGGGGAG+AGG + chr4.1:5429918-5429937 MS.gene06001:CDS 55.0%
CCACCAAAAGGTCTACCAGG+TGG - chr4.1:5429787-5429806 None:intergenic 55.0%
CCAGATCCACGACCAAATCC+AGG - chr4.1:5431317-5431336 None:intergenic 55.0%
CTCTCCCCTTCAAATCTGGG+TGG - chr4.1:5429920-5429939 None:intergenic 55.0%
GAAGGGGAGAGGAGATTTGG+TGG + chr4.1:5429929-5429948 MS.gene06001:CDS 55.0%
GGACCACCAAAAGGTCTACC+AGG - chr4.1:5429790-5429809 None:intergenic 55.0%
GGAGGTCCTCGTGGTGAATT+TGG + chr4.1:5429971-5429990 MS.gene06001:CDS 55.0%
GGGGTCCACCCAGATTTGAA+GGG + chr4.1:5429912-5429931 MS.gene06001:intron 55.0%
GGGTCCACCCAGATTTGAAG+GGG + chr4.1:5429913-5429932 MS.gene06001:CDS 55.0%
GGTCCTCGTGGTGAATTTGG+AGG + chr4.1:5429974-5429993 MS.gene06001:CDS 55.0%
TACCTAGGACGATCACCCTG+TGG - chr4.1:5429811-5429830 None:intergenic 55.0%
TCACCCTGTGGACCACCAAA+AGG - chr4.1:5429799-5429818 None:intergenic 55.0%
! CCACCTGGTAGACCTTTTGG+TGG + chr4.1:5429784-5429803 MS.gene06001:CDS 55.0%
! CCTGGATTTGGTCGTGGATC+TGG + chr4.1:5431314-5431333 MS.gene06001:CDS 55.0%
! GGATTTGGTCGTGGATCTGG+TGG + chr4.1:5431317-5431336 MS.gene06001:CDS 55.0%
! GGTCGTGGATCTGGTGGTTT+TGG + chr4.1:5431323-5431342 MS.gene06001:CDS 55.0%
! TGTCTTGTTGTGCAGGGTCC+TGG + chr4.1:5431284-5431303 MS.gene06001:intron 55.0%
CCAAATCCAGGCCTTCCACC+AGG - chr4.1:5431305-5431324 None:intergenic 60.0%
CCTGGTGGAAGGCCTGGATT+TGG + chr4.1:5431302-5431321 MS.gene06001:CDS 60.0%
GACCTCCACGGTACCCATCA+CGG - chr4.1:5429958-5429977 None:intergenic 60.0%
GTCCACAGGGTGATCGTCCT+AGG + chr4.1:5429806-5429825 MS.gene06001:CDS 60.0%
TTGTGCAGGGTCCTGGTGGA+AGG + chr4.1:5431291-5431310 MS.gene06001:intron 60.0%
! CTTGTTGTGCAGGGTCCTGG+TGG + chr4.1:5431287-5431306 MS.gene06001:intron 60.0%
! GGAAGGCCTGGATTTGGTCG+TGG + chr4.1:5431308-5431327 MS.gene06001:CDS 60.0%
!! GACCGTGATGGGTACCGTGG+AGG + chr4.1:5429953-5429972 MS.gene06001:CDS 65.0%
!! GGTGACCGTGATGGGTACCG+TGG + chr4.1:5429950-5429969 MS.gene06001:CDS 65.0%
CAGGGTCCTGGTGGAAGGCC+TGG + chr4.1:5431296-5431315 MS.gene06001:intron 70.0%
! GGGTACCGTGGAGGTCCTCG+TGG + chr4.1:5429962-5429981 MS.gene06001:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 5429312 5431373 5429312 ID=MS.gene06001
chr4.1 mRNA 5429312 5431373 5429312 ID=MS.gene06001.t1;Parent=MS.gene06001
chr4.1 exon 5429312 5429314 5429312 ID=MS.gene06001.t1.exon1;Parent=MS.gene06001.t1
chr4.1 CDS 5429312 5429314 5429312 ID=cds.MS.gene06001.t1;Parent=MS.gene06001.t1
chr4.1 exon 5429395 5429443 5429395 ID=MS.gene06001.t1.exon2;Parent=MS.gene06001.t1
chr4.1 CDS 5429395 5429443 5429395 ID=cds.MS.gene06001.t1;Parent=MS.gene06001.t1
chr4.1 exon 5429548 5429827 5429548 ID=MS.gene06001.t1.exon3;Parent=MS.gene06001.t1
chr4.1 CDS 5429548 5429827 5429548 ID=cds.MS.gene06001.t1;Parent=MS.gene06001.t1
chr4.1 exon 5429913 5430039 5429913 ID=MS.gene06001.t1.exon4;Parent=MS.gene06001.t1
chr4.1 CDS 5429913 5430039 5429913 ID=cds.MS.gene06001.t1;Parent=MS.gene06001.t1
chr4.1 exon 5431299 5431373 5431299 ID=MS.gene06001.t1.exon5;Parent=MS.gene06001.t1
chr4.1 CDS 5431299 5431373 5431299 ID=cds.MS.gene06001.t1;Parent=MS.gene06001.t1
Gene Sequence

>MS.gene06001

ATGGTATGCATCCCTTATTCTTCATTCTAGGGTTCAGTGTTGTTTTCAATTGATAACATTTTCGTGCATGTTAATTTATTCAGATCATATCTGAGAAAAACCGCAAAGAGATCTGCAAGTACCTTTTCCAAGGTATATTATATTTAACACAAATCGTAATCATTTTCATCTTTGTTTATACGTCTATGTCGTAGTTTATAATCTTACTTTCTCTGTTTCTGAATTGTTGAATGTAGAGGGTGTATGCTATGCCAAGAAGGATTTCAATTTGGCAAAGCATCCAGAAATCGATGTTCCAAATTTGCAGGTGATTAAGCTTATGCAGAGCTTCAAATCAAGGGAATATGTTAGAGAAACCTTTGCTTGGATGAATTATTACTGGTTTCTCACTAATGACGGAATTGAGTTTCTCAGAACTTACTTGAATCTTCCTTCTGAGATTGTTCCTGCTACTTTGAAGAAACAAGCTAAGCCACCTGGTAGACCTTTTGGTGGTCCACAGGGTGATCGTCCTAGGTATTATCACTTCATTTCTGTTGTTTATTTTATTGTACGGTTTTTTATTACGTGGGTTATTGAAAAATGGTTGATTTGTGTATAGGGGTCCACCCAGATTTGAAGGGGAGAGGAGATTTGGTGGTGACCGTGATGGGTACCGTGGAGGTCCTCGTGGTGAATTTGGAGGAGACAAGGGAGGTGCTCCTGCTGATTACAGACCCTCATTTGGGGTAAGCTTATTGTTTAACTCAATGTTGCATTTGTTTCTGGCTGGTCTTAGTATCGTTGTTTACTGTCTAAATTATTTAAGATGATGTTAGTAAAAGTAGCTTATAGTGTTTTGCATTTATTTATATGATATGATGCCCAATTGCGTTGTTGATGAATAAATAATATACTCCCTCCGTTCCTTTTTAATTGTCACATTTTGACTTTTTACACAAACCAAGACAACAAATACTTTTACTACTTTTGATACAACAATTTATCTTTTTCCTATAATAACCTTAATCATTTAATACTTCATTTCATACATTTCTCTCTCTGCAATAAATATATAGGGGTAATATAGGTAAAGCCACATTTAATGATGCTTTGAACTTTGAAAACGACAGTTAATTAGAAACAAAAATTATATGCAAAAGTGACAGTTATAAAGGAACGGAGGGAGTAGCTTCTAATGTAATGTCTTGCGAAGCAGGCCGTTCCGTTCCAGTTAGCATTGGTATTATCATATCTTTATTCATATGATGCTCAATTGTGTGGTTGATGAAGAAAATATTTCTGTTTTAAGATGATGTTAATAGTGCTTACTTTAAGCACGGACATTCTTTGAATTACGTGTGTCCTGGTGTTGGCATGTAGTGTCAATGTCTGTGTCTTGTCCGATGACATGTTATGGATTTATAGTATGCTTAATTGCCTTTTTGACTGCCGAATACAAGATTTCTCTTTTGTCCTGACTTGTTTAAATTTTTCAAGTATGGGTGACTTGCCTTGTTGATAAATAAATTATTTCTGTTTTGTCTACTTGTTAAAAAATTTCAATTATGGATTAACTTGTATTCATTGTGTAAAGTCGTGAAGTGTTTCAATACTTCTTTTTTTGTCAGCTTCAAGTTTTGGGTTTCCCTGCAATTCAGACTTGTTCTATATCATTTCTACAATTACATTCGAAGTTGGGTTTTATATCAATTCGATTTCATTCTTAATGCAATTATATTATTTTGCTCCTTTTCCTATGAATATGATTTCATTCACCAATGTAGTATTTTAATTTACTTATTCTGGTGGATAAGTGCTTTTGTTTTGTTGTTTTGATAACTAAGTAGTTGTAGTCATATTCATAATCATAACTAGGTATTTGCATAAAAGAATTTTGCTAGAAATCCATTCCTGTATACAATTGTACTCTCCTATTTTGGGTAGTCCCACTGTTTTTTTTTTGGTTGAAGTTTTTGTGAATTGTCTGAGCTGTCTTGTTGTGCAGGGTCCTGGTGGAAGGCCTGGATTTGGTCGTGGATCTGGTGGTTTTGGGGCTCCTCCAACTAGCTCAGATGCTTAA

Protein sequence

>MS.gene06001.t1

MIISEKNRKEICKYLFQEGVCYAKKDFNLAKHPEIDVPNLQVIKLMQSFKSREYVRETFAWMNYYWFLTNDGIEFLRTYLNLPSEIVPATLKKQAKPPGRPFGGPQGDRPRGPPRFEGERRFGGDRDGYRGGPRGEFGGDKGGAPADYRPSFGGPGGRPGFGRGSGGFGAPPTSSDA