Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06477.t1 | XP_003602491.1 | 99 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.00E-49 | 205.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06477.t1 | G7JAB0 | 99.0 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 7.3e-50 | 205.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049358 | MS.gene06477 | 0.893746 | 4.72E-75 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06477.t1 | MTR_3g094970 | 99.000 | 100 | 1 | 0 | 1 | 100 | 1 | 100 | 1.59e-72 | 210 |
| MS.gene06477.t1 | MTR_3g094970 | 100.000 | 70 | 0 | 0 | 31 | 100 | 1 | 70 | 1.49e-48 | 149 |
| MS.gene06477.t1 | MTR_8g091930 | 58.333 | 108 | 37 | 3 | 1 | 100 | 3 | 110 | 4.39e-39 | 126 |
| MS.gene06477.t1 | MTR_8g091930 | 56.731 | 104 | 37 | 3 | 5 | 100 | 6 | 109 | 1.02e-36 | 120 |
| MS.gene06477.t1 | MTR_8g091930 | 79.310 | 58 | 12 | 0 | 1 | 58 | 3 | 60 | 8.61e-30 | 102 |
| MS.gene06477.t1 | MTR_8g091930 | 77.778 | 54 | 12 | 0 | 5 | 58 | 6 | 59 | 1.94e-27 | 96.7 |
| MS.gene06477.t1 | MTR_2g035990 | 51.515 | 99 | 34 | 3 | 1 | 99 | 1 | 85 | 1.07e-25 | 91.7 |
| MS.gene06477.t1 | MTR_2g036020 | 50.505 | 99 | 35 | 2 | 1 | 99 | 1 | 85 | 7.37e-25 | 89.7 |
| MS.gene06477.t1 | MTR_2g035950 | 48.485 | 99 | 37 | 2 | 1 | 99 | 1 | 85 | 9.01e-24 | 87.0 |
| MS.gene06477.t1 | MTR_3g094890 | 44.681 | 94 | 38 | 2 | 6 | 99 | 2 | 81 | 7.20e-19 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06477.t1 | AT5G09960 | 55.455 | 110 | 38 | 3 | 2 | 100 | 3 | 112 | 1.74e-35 | 117 |
| MS.gene06477.t1 | AT5G09960 | 56.190 | 105 | 35 | 3 | 7 | 100 | 6 | 110 | 4.78e-34 | 113 |
| MS.gene06477.t1 | AT5G64850 | 54.386 | 114 | 38 | 2 | 1 | 100 | 1 | 114 | 1.36e-33 | 112 |
| MS.gene06477.t1 | AT5G09960 | 51.190 | 84 | 32 | 2 | 26 | 100 | 1 | 84 | 1.72e-21 | 81.3 |
| MS.gene06477.t1 | AT5G19473 | 41.176 | 102 | 52 | 4 | 1 | 99 | 1 | 97 | 9.10e-21 | 79.7 |
| MS.gene06477.t1 | AT5G19473 | 41.667 | 96 | 49 | 3 | 7 | 99 | 41 | 132 | 9.86e-20 | 78.2 |
Find 27 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTTACCACTGCAGAAT+TGG | 0.341653 | 3.2:+79386154 | None:intergenic |
| TTTGTGGTAGTGAGGATGCT+GGG | 0.363051 | 3.2:+79386178 | None:intergenic |
| GGATCAGAAGGGCCCATTGC+CGG | 0.392403 | 3.2:-79386336 | MS.gene06477:CDS |
| TGGCTATCGGTCCCACAGTT+TGG | 0.419649 | 3.2:-79386365 | MS.gene06477:CDS |
| TGGCAATGAGGAGGAGTTTG+CGG | 0.468439 | 3.2:-79386240 | MS.gene06477:CDS |
| AAGACTTGCTCTTGAAGCAT+TGG | 0.469288 | 3.2:+79386262 | None:intergenic |
| GGTCCCACAGTTTGGCGAAT+GGG | 0.471256 | 3.2:-79386357 | MS.gene06477:CDS |
| ATGCTGGGGTTCGCTGTGAT+CGG | 0.500648 | 3.2:+79386193 | None:intergenic |
| CCCATTGCCGGACTATTCCA+TGG | 0.515219 | 3.2:-79386324 | MS.gene06477:CDS |
| TCCATGGAATAGTCCGGCAA+TGG | 0.528219 | 3.2:+79386323 | None:intergenic |
| CCATGGAATAGTCCGGCAAT+GGG | 0.531041 | 3.2:+79386324 | None:intergenic |
| CGGTCCCACAGTTTGGCGAA+TGG | 0.553714 | 3.2:-79386358 | MS.gene06477:CDS |
| GTTTGGCGAATGGGATCAGA+AGG | 0.556862 | 3.2:-79386348 | MS.gene06477:CDS |
| GCCTTTACGTTCTTCTGAGT+AGG | 0.564283 | 3.2:+79386215 | None:intergenic |
| ACTTATGGAGCAAAATAAAG+AGG | 0.574874 | 3.2:-79387050 | None:intergenic |
| TTGTGGTAGTGAGGATGCTG+GGG | 0.577503 | 3.2:+79386179 | None:intergenic |
| AACTGTGGGACCGATAGCCA+AGG | 0.578221 | 3.2:+79386368 | None:intergenic |
| TGATCCCATTCGCCAAACTG+TGG | 0.590185 | 3.2:+79386353 | None:intergenic |
| GATCCCATTCGCCAAACTGT+GGG | 0.591973 | 3.2:+79386354 | None:intergenic |
| AATGCTTCAAGAGCAAGTCT+TGG | 0.596021 | 3.2:-79386260 | MS.gene06477:CDS |
| AAGAGCAAGTCTTGGCAATG+AGG | 0.602463 | 3.2:-79386252 | MS.gene06477:CDS |
| ACTGTGGGACCGATAGCCAA+GGG | 0.608973 | 3.2:+79386369 | None:intergenic |
| AGCAAGTCTTGGCAATGAGG+AGG | 0.615986 | 3.2:-79386249 | MS.gene06477:CDS |
| TCCTACTCAGAAGAACGTAA+AGG | 0.619222 | 3.2:-79386216 | MS.gene06477:CDS |
| CCACAAAACCAATTCTGCAG+TGG | 0.661784 | 3.2:-79386162 | MS.gene06477:intron |
| CTGTGGGACCGATAGCCAAG+GGG | 0.713527 | 3.2:+79386370 | None:intergenic |
| TTTGGCGAATGGGATCAGAA+GGG | 0.720121 | 3.2:-79386347 | MS.gene06477:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATACAAGTATATTTATA+TGG | + | chr3.2:79386253-79386272 | None:intergenic | 10.0% |
| !! | TACATAATATAAATATAATC+CGG | + | chr3.2:79386624-79386643 | None:intergenic | 10.0% |
| !!! | TAATATTTTAAAATCTTCAT+TGG | - | chr3.2:79386848-79386867 | MS.gene06477:intron | 10.0% |
| !! | AAGTTACAACATATAAAATT+AGG | + | chr3.2:79385160-79385179 | None:intergenic | 15.0% |
| !! | AGAAAAAATTGTTATACTGT+TGG | + | chr3.2:79385896-79385915 | None:intergenic | 20.0% |
| !! | AGATTAATAAGTTAGAATAC+TGG | + | chr3.2:79385475-79385494 | None:intergenic | 20.0% |
| !! | GTTGAATTACATAAGTTTAT+AGG | + | chr3.2:79385006-79385025 | None:intergenic | 20.0% |
| !! | TACAAAATATTGGATATTTG+TGG | - | chr3.2:79386953-79386972 | MS.gene06477:intron | 20.0% |
| !! | TTGTATAATAATGTTGAACA+TGG | - | chr3.2:79386264-79386283 | MS.gene06477:CDS | 20.0% |
| !!! | GGAAAGTACTTTTTAAAAAA+AGG | - | chr3.2:79386321-79386340 | MS.gene06477:CDS | 20.0% |
| !!! | TACTTTTTAAAAAAAGGAGA+TGG | - | chr3.2:79386327-79386346 | MS.gene06477:CDS | 20.0% |
| ! | AAAATTGTATGTTGTTGTCT+TGG | + | chr3.2:79386740-79386759 | None:intergenic | 25.0% |
| ! | CAAGTATATTTATATGGTAG+TGG | + | chr3.2:79386247-79386266 | None:intergenic | 25.0% |
| ! | CGAGAATAGATTGATAAATT+AGG | + | chr3.2:79385066-79385085 | None:intergenic | 25.0% |
| ! | CTTTAGATTCTTTGATTGTA+TGG | - | chr3.2:79385914-79385933 | MS.gene06477:intron | 25.0% |
| ! | GTATCATATAGAATTGTTGT+AGG | - | chr3.2:79386641-79386660 | MS.gene06477:intron | 25.0% |
| ! | TATCTGTATAGCTCAATAAT+GGG | - | chr3.2:79385776-79385795 | MS.gene06477:intron | 25.0% |
| ! | TTACTATAGTAGTTGAATAG+TGG | - | chr3.2:79385815-79385834 | MS.gene06477:intron | 25.0% |
| ! | TTATCTGTATAGCTCAATAA+TGG | - | chr3.2:79385775-79385794 | MS.gene06477:intron | 25.0% |
| ! | TTTGACATTCACAATTCTTA+AGG | + | chr3.2:79385991-79386010 | None:intergenic | 25.0% |
| !! | ACTTGTTAAAAAACTAGTAG+TGG | + | chr3.2:79386214-79386233 | None:intergenic | 25.0% |
| !! | ATAATTCATGTTTCTGTGTT+AGG | - | chr3.2:79384943-79384962 | MS.gene06477:intron | 25.0% |
| !! | TAAGGATTTTTGCATTTTCA+AGG | + | chr3.2:79385973-79385992 | None:intergenic | 25.0% |
| !! | TTTGAAACATTCATTCTCTT+TGG | - | chr3.2:79386928-79386947 | MS.gene06477:intron | 25.0% |
| !!! | CATGGATTTTTCGAAAATTA+GGG | - | chr3.2:79385577-79385596 | MS.gene06477:intron | 25.0% |
| !!! | GTATATGCTTTTTCTTTCAT+TGG | + | chr3.2:79386600-79386619 | None:intergenic | 25.0% |
| !!! | TCACCAACTTCTTTTATTTA+CGG | - | chr3.2:79386137-79386156 | MS.gene06477:intron | 25.0% |
| !!! | TCGAAAATTGTTTTGTCTAA+TGG | - | chr3.2:79385940-79385959 | MS.gene06477:intron | 25.0% |
| !!! | TCTTTCATTGGATTTTTTTC+AGG | + | chr3.2:79386588-79386607 | None:intergenic | 25.0% |
| AAGTGATCAGAAGAATAATG+TGG | - | chr3.2:79386297-79386316 | MS.gene06477:CDS | 30.0% | |
| AATTCCTCATACTCTATCAT+TGG | - | chr3.2:79385856-79385875 | MS.gene06477:intron | 30.0% | |
| ACATATTTGTTTCCTTAACC+AGG | + | chr3.2:79385309-79385328 | None:intergenic | 30.0% | |
| AGAATACTGGTCATCATAAT+AGG | + | chr3.2:79385462-79385481 | None:intergenic | 30.0% | |
| AGACCGTAAATAAAAGAAGT+TGG | + | chr3.2:79386143-79386162 | None:intergenic | 30.0% | |
| ATACTCTATCATTGGATGAT+AGG | - | chr3.2:79385864-79385883 | MS.gene06477:intron | 30.0% | |
| CTAAAAAAATGTGCAAGTGA+TGG | + | chr3.2:79386668-79386687 | None:intergenic | 30.0% | |
| CTCTTTGGTCTACAAAATAT+TGG | - | chr3.2:79386943-79386962 | MS.gene06477:intron | 30.0% | |
| GAAAAATGTTAACAAGTGTC+CGG | - | chr3.2:79385280-79385299 | MS.gene06477:intron | 30.0% | |
| TTGCAGAATAATCACTTCAT+AGG | + | chr3.2:79385126-79385145 | None:intergenic | 30.0% | |
| ! | CCTAATTTTCGAAAAATCCA+TGG | + | chr3.2:79385579-79385598 | None:intergenic | 30.0% |
| ! | GAAAGAAAAAGCATATACTC+CGG | - | chr3.2:79386602-79386621 | MS.gene06477:intron | 30.0% |
| !! | ATATTTATATGGTAGTGGAG+CGG | + | chr3.2:79386242-79386261 | None:intergenic | 30.0% |
| !! | CCATGGATTTTTCGAAAATT+AGG | - | chr3.2:79385576-79385595 | MS.gene06477:intron | 30.0% |
| !!! | CTTGCACATTTTTTTAGCAA+AGG | - | chr3.2:79386671-79386690 | MS.gene06477:intron | 30.0% |
| AAGAACTAATGTCTATCCCT+TGG | + | chr3.2:79386022-79386041 | None:intergenic | 35.0% | |
| AATGTCAAAATGTTTCCCCA+AGG | - | chr3.2:79386002-79386021 | MS.gene06477:intron | 35.0% | |
| ACTAATATGGCTGATATGTG+TGG | - | chr3.2:79386049-79386068 | MS.gene06477:intron | 35.0% | |
| AGAACTAATGTCTATCCCTT+GGG | + | chr3.2:79386021-79386040 | None:intergenic | 35.0% | |
| ATAGTTTCAACTACCAGCTT+TGG | + | chr3.2:79386541-79386560 | None:intergenic | 35.0% | |
| ATCTATACGCTTTCGTTTCT+TGG | - | chr3.2:79384883-79384902 | MS.gene06477:intron | 35.0% | |
| ATGTCAAAATGTTTCCCCAA+GGG | - | chr3.2:79386003-79386022 | MS.gene06477:intron | 35.0% | |
| GAAAAATCCATGGAATAGTC+CGG | + | chr3.2:79385569-79385588 | None:intergenic | 35.0% | |
| GTTCTTGAGCATGACTAATA+TGG | - | chr3.2:79386036-79386055 | MS.gene06477:intron | 35.0% | |
| TATTGGATATTTGTGGTGCT+TGG | - | chr3.2:79386960-79386979 | MS.gene06477:intron | 35.0% | |
| TCATCCAATGATAGAGTATG+AGG | + | chr3.2:79385863-79385882 | None:intergenic | 35.0% | |
| TGATCAGAAGAATAATGTGG+TGG | - | chr3.2:79386300-79386319 | MS.gene06477:CDS | 35.0% | |
| ! | CAGTAGTTGTCATATGCTTT+TGG | - | chr3.2:79386475-79386494 | MS.gene06477:intron | 35.0% |
| ! | TTTCTCTCTTTTTGCAGAGA+AGG | - | chr3.2:79387004-79387023 | MS.gene06477:intron | 35.0% |
| !! | TCAATAATGGGTTGTCAACA+TGG | - | chr3.2:79385788-79385807 | MS.gene06477:intron | 35.0% |
| !!! | GCACATTTTTTTAGCAAAGG+CGG | - | chr3.2:79386674-79386693 | MS.gene06477:intron | 35.0% |
| AAAACAGTGCCACCAAACTA+AGG | - | chr3.2:79386425-79386444 | MS.gene06477:intron | 40.0% | |
| AAACCAGAAGAACCGTTACA+AGG | + | chr3.2:79385233-79385252 | None:intergenic | 40.0% | |
| AAATTCGCCTCTCCTTGTAA+CGG | - | chr3.2:79385218-79385237 | MS.gene06477:intron | 40.0% | |
| AATGCTTCAAGAGCAAGTCT+TGG | - | chr3.2:79385623-79385642 | MS.gene06477:intron | 40.0% | |
| ATCGAAGCTTGCAATTCAGA+CGG | + | chr3.2:79384982-79385001 | None:intergenic | 40.0% | |
| CAGAACCATATCTTTCCATG+AGG | + | chr3.2:79386386-79386405 | None:intergenic | 40.0% | |
| CATGAAACATGGTGATTGGT+GGG | - | chr3.2:79386821-79386840 | MS.gene06477:intron | 40.0% | |
| CTCATGGAAAGATATGGTTC+TGG | - | chr3.2:79386384-79386403 | MS.gene06477:intron | 40.0% | |
| GAACTAATGTCTATCCCTTG+GGG | + | chr3.2:79386020-79386039 | None:intergenic | 40.0% | |
| GAATCTTACCACTGCAGAAT+TGG | + | chr3.2:79385732-79385751 | None:intergenic | 40.0% | |
| TAAGAGAGAGCCATGAAACA+TGG | - | chr3.2:79386810-79386829 | MS.gene06477:intron | 40.0% | |
| TCCTACTCAGAAGAACGTAA+AGG | - | chr3.2:79385667-79385686 | MS.gene06477:intron | 40.0% | |
| TGCACATGCATCGGATAATT+GGG | - | chr3.2:79386766-79386785 | MS.gene06477:intron | 40.0% | |
| TTTAGTTGCTGCACATGCAT+CGG | - | chr3.2:79386757-79386776 | MS.gene06477:intron | 40.0% | |
| ! | AAGACTTGCTCTTGAAGCAT+TGG | + | chr3.2:79385624-79385643 | None:intergenic | 40.0% |
| !! | GAAGTTGGTGACAAACTCAT+TGG | + | chr3.2:79386128-79386147 | None:intergenic | 40.0% |
| !! | GATATGGTTCTGGTAGCATT+AGG | - | chr3.2:79386394-79386413 | MS.gene06477:intron | 40.0% |
| !! | TGTAACGGTTCTTCTGGTTT+AGG | - | chr3.2:79385233-79385252 | MS.gene06477:intron | 40.0% |
| !!! | CATTTTTTTAGCAAAGGCGG+TGG | - | chr3.2:79386677-79386696 | MS.gene06477:intron | 40.0% |
| !!! | GAATTGGTTTTGTGGTAGTG+AGG | + | chr3.2:79385716-79385735 | None:intergenic | 40.0% |
| AAAGGCGGTGGTTATGTTGA+AGG | - | chr3.2:79386689-79386708 | MS.gene06477:intron | 45.0% | |
| AAGAGCAAGTCTTGGCAATG+AGG | - | chr3.2:79385631-79385650 | MS.gene06477:intron | 45.0% | |
| AGAAGAACCGTTACAAGGAG+AGG | + | chr3.2:79385228-79385247 | None:intergenic | 45.0% | |
| CCACAAAACCAATTCTGCAG+TGG | - | chr3.2:79385721-79385740 | MS.gene06477:intron | 45.0% | |
| CCACCAATCACCATGTTTCA+TGG | + | chr3.2:79386823-79386842 | None:intergenic | 45.0% | |
| CCATGAAACATGGTGATTGG+TGG | - | chr3.2:79386820-79386839 | MS.gene06477:intron | 45.0% | |
| CTGCACATGCATCGGATAAT+TGG | - | chr3.2:79386765-79386784 | MS.gene06477:intron | 45.0% | |
| GAGACAAATACAACCCCATC+AGG | - | chr3.2:79386357-79386376 | MS.gene06477:CDS | 45.0% | |
| GAGCCATGAAACATGGTGAT+TGG | - | chr3.2:79386817-79386836 | MS.gene06477:intron | 45.0% | |
| GCACATGCATCGGATAATTG+GGG | - | chr3.2:79386767-79386786 | MS.gene06477:intron | 45.0% | |
| GCCTTTACGTTCTTCTGAGT+AGG | + | chr3.2:79385671-79385690 | None:intergenic | 45.0% | |
| GGACACCTCATGGAAAGATA+TGG | - | chr3.2:79386378-79386397 | MS.gene06477:CDS | 45.0% | |
| GTACCTGTCATATGCTTCGT+TGG | - | chr3.2:79386515-79386534 | MS.gene06477:intron | 45.0% | |
| TCTCCTTGTAACGGTTCTTC+TGG | - | chr3.2:79385227-79385246 | MS.gene06477:intron | 45.0% | |
| TGTTTCCTTAACCAGGCAAC+CGG | + | chr3.2:79385302-79385321 | None:intergenic | 45.0% | |
| TTTGGCGAATGGGATCAGAA+GGG | - | chr3.2:79385536-79385555 | MS.gene06477:intron | 45.0% | |
| ! | CTCTCTTTTTGCAGAGAAGG+AGG | - | chr3.2:79387007-79387026 | MS.gene06477:intron | 45.0% |
| ! | GAATTTTCCCCTGTGAACTC+GGG | + | chr3.2:79385841-79385860 | None:intergenic | 45.0% |
| ! | GGAATTTTCCCCTGTGAACT+CGG | + | chr3.2:79385842-79385861 | None:intergenic | 45.0% |
| ! | TTTCCATGAGGTGTCCTGAT+GGG | + | chr3.2:79386374-79386393 | None:intergenic | 45.0% |
| ! | TTTGTGGTAGTGAGGATGCT+GGG | + | chr3.2:79385708-79385727 | None:intergenic | 45.0% |
| !! | TTTTGTGGTAGTGAGGATGC+TGG | + | chr3.2:79385709-79385728 | None:intergenic | 45.0% |
| !!! | CCACTGCAGAATTGGTTTTG+TGG | + | chr3.2:79385724-79385743 | None:intergenic | 45.0% |
| AATAGTGGCCCGAGTTCACA+GGG | - | chr3.2:79385830-79385849 | MS.gene06477:intron | 50.0% | |
| AGCAAGTCTTGGCAATGAGG+AGG | - | chr3.2:79385634-79385653 | MS.gene06477:intron | 50.0% | |
| AGTGCCACCAAACTAAGGTC+GGG | - | chr3.2:79386430-79386449 | MS.gene06477:intron | 50.0% | |
| CAATGCAGAAAAACGCCCCT+TGG | - | chr3.2:79385498-79385517 | MS.gene06477:intron | 50.0% | |
| CAGTGCCACCAAACTAAGGT+CGG | - | chr3.2:79386429-79386448 | MS.gene06477:intron | 50.0% | |
| CCATGGAATAGTCCGGCAAT+GGG | + | chr3.2:79385562-79385581 | None:intergenic | 50.0% | |
| GAAAAACGCCCCTTGGCTAT+CGG | - | chr3.2:79385505-79385524 | MS.gene06477:intron | 50.0% | |
| GATAAGAGTGAGCGAGAACG+AGG | + | chr3.2:79384866-79384885 | None:intergenic | 50.0% | |
| GATCCCATTCGCCAAACTGT+GGG | + | chr3.2:79385532-79385551 | None:intergenic | 50.0% | |
| GTTTGGCGAATGGGATCAGA+AGG | - | chr3.2:79385535-79385554 | MS.gene06477:intron | 50.0% | |
| TATGCTTCGTTGGCCAAAGC+TGG | - | chr3.2:79386525-79386544 | MS.gene06477:intron | 50.0% | |
| TCCATGGAATAGTCCGGCAA+TGG | + | chr3.2:79385563-79385582 | None:intergenic | 50.0% | |
| TGATCCCATTCGCCAAACTG+TGG | + | chr3.2:79385533-79385552 | None:intergenic | 50.0% | |
| TGGCAATGAGGAGGAGTTTG+CGG | - | chr3.2:79385643-79385662 | MS.gene06477:intron | 50.0% | |
| TGGCCAACGAAGCATATGAC+AGG | + | chr3.2:79386521-79386540 | None:intergenic | 50.0% | |
| TTAACAAGTGTCCGGTTGCC+TGG | - | chr3.2:79385288-79385307 | MS.gene06477:intron | 50.0% | |
| ! | CTTTCCATGAGGTGTCCTGA+TGG | + | chr3.2:79386375-79386394 | None:intergenic | 50.0% |
| ! | TTCCATGAGGTGTCCTGATG+GGG | + | chr3.2:79386373-79386392 | None:intergenic | 50.0% |
| ! | TTGTGGTAGTGAGGATGCTG+GGG | + | chr3.2:79385707-79385726 | None:intergenic | 50.0% |
| AAACTAAGGTCGGGGCTTGC+TGG | - | chr3.2:79386439-79386458 | MS.gene06477:intron | 55.0% | |
| AACCCCATCAGGACACCTCA+TGG | - | chr3.2:79386368-79386387 | MS.gene06477:CDS | 55.0% | |
| AACTGTGGGACCGATAGCCA+AGG | + | chr3.2:79385518-79385537 | None:intergenic | 55.0% | |
| ACTGTGGGACCGATAGCCAA+GGG | + | chr3.2:79385517-79385536 | None:intergenic | 55.0% | |
| AGCAAGCCCCGACCTTAGTT+TGG | + | chr3.2:79386440-79386459 | None:intergenic | 55.0% | |
| AGTGTCCGGTTGCCTGGTTA+AGG | - | chr3.2:79385294-79385313 | MS.gene06477:intron | 55.0% | |
| ATAGTGGCCCGAGTTCACAG+GGG | - | chr3.2:79385831-79385850 | MS.gene06477:intron | 55.0% | |
| ATGCTGGGGTTCGCTGTGAT+CGG | + | chr3.2:79385693-79385712 | None:intergenic | 55.0% | |
| CCCATTGCCGGACTATTCCA+TGG | - | chr3.2:79385559-79385578 | MS.gene06477:intron | 55.0% | |
| GAATAGTGGCCCGAGTTCAC+AGG | - | chr3.2:79385829-79385848 | MS.gene06477:intron | 55.0% | |
| GGTCCCACAGTTTGGCGAAT+GGG | - | chr3.2:79385526-79385545 | MS.gene06477:intron | 55.0% | |
| GTGCCACCAAACTAAGGTCG+GGG | - | chr3.2:79386431-79386450 | MS.gene06477:intron | 55.0% | |
| TGGCTATCGGTCCCACAGTT+TGG | - | chr3.2:79385518-79385537 | MS.gene06477:intron | 55.0% | |
| ! | AAGCCCCGACCTTAGTTTGG+TGG | + | chr3.2:79386437-79386456 | None:intergenic | 55.0% |
| CGGTCCCACAGTTTGGCGAA+TGG | - | chr3.2:79385525-79385544 | MS.gene06477:intron | 60.0% | |
| CTGTGGGACCGATAGCCAAG+GGG | + | chr3.2:79385516-79385535 | None:intergenic | 60.0% | |
| GGATCAGAAGGGCCCATTGC+CGG | - | chr3.2:79385547-79385566 | MS.gene06477:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79384837 | 79387068 | 79384837 | ID=MS.gene06477 |
| chr3.2 | mRNA | 79384837 | 79387068 | 79384837 | ID=MS.gene06477.t1;Parent=MS.gene06477 |
| chr3.2 | exon | 79387051 | 79387068 | 79387051 | ID=MS.gene06477.t1.exon1;Parent=MS.gene06477.t1 |
| chr3.2 | CDS | 79387051 | 79387068 | 79387051 | ID=cds.MS.gene06477.t1;Parent=MS.gene06477.t1 |
| chr3.2 | exon | 79386163 | 79386399 | 79386163 | ID=MS.gene06477.t1.exon2;Parent=MS.gene06477.t1 |
| chr3.2 | CDS | 79386163 | 79386399 | 79386163 | ID=cds.MS.gene06477.t1;Parent=MS.gene06477.t1 |
| chr3.2 | exon | 79384837 | 79384884 | 79384837 | ID=MS.gene06477.t1.exon3;Parent=MS.gene06477.t1 |
| chr3.2 | CDS | 79384837 | 79384884 | 79384837 | ID=cds.MS.gene06477.t1;Parent=MS.gene06477.t1 |
| Gene Sequence |
| Protein sequence |
