Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06485.t1 | XP_003593610.1 | 96.5 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 8.80E-104 | 386.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06485.t1 | Q9ZQH0 | 74.6 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 6.6e-84 | 311.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06485.t1 | G7ISC8 | 96.5 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 6.3e-104 | 386.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055818 | MS.gene06485 | 0.808352 | 3.23E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06485.t1 | MTR_2g014120 | 96.517 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 5.68e-139 | 388 |
MS.gene06485.t1 | MTR_7g108540 | 96.517 | 201 | 7 | 0 | 1 | 201 | 1 | 201 | 1.19e-138 | 387 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene06485.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06485.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06485.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
MS.gene06485.t1 | AT2G27490 | 74.627 | 201 | 51 | 0 | 1 | 201 | 1 | 201 | 7.71e-109 | 311 |
Find 53 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGTCTCTGAATCTGTGTTTC+AGG | 0.209401 | 3.2:+79279485 | None:intergenic |
ATCAACCCACACAACAATTA+TGG | 0.226242 | 3.2:+79279508 | None:intergenic |
ATATATCCTCGGGGATCTTT+TGG | 0.227206 | 3.2:-79279622 | MS.gene06485:CDS |
TTGAGAAATTGACGCTTATC+AGG | 0.303211 | 3.2:+79279746 | None:intergenic |
TGAACAATTTCAGAACGTTT+TGG | 0.336190 | 3.2:-79279336 | MS.gene06485:CDS |
AGATGCCGCTGGATGGTAAA+AGG | 0.351308 | 3.2:-79279409 | MS.gene06485:CDS |
TGACGTCCCTTTGTTATTTG+AGG | 0.363223 | 3.2:-79279555 | MS.gene06485:CDS |
AAGATCCCCGAGGATATATA+TGG | 0.384217 | 3.2:+79279626 | None:intergenic |
ATAGAATAAATGAGGATTGT+TGG | 0.388584 | 3.2:-79280084 | None:intergenic |
ACTACATCAGCGTCGACAAC+AGG | 0.406465 | 3.2:+79279997 | None:intergenic |
GTCGTGAGACTTGAATAAAT+TGG | 0.409640 | 3.2:+79280023 | None:intergenic |
TCAACCCACACAACAATTAT+GGG | 0.455800 | 3.2:+79279509 | None:intergenic |
TACTAGGATGCGTTGAAGAA+AGG | 0.463219 | 3.2:-79279872 | MS.gene06485:intron |
TTGGCTCCATATATATCCTC+GGG | 0.483634 | 3.2:-79279632 | MS.gene06485:CDS |
ACTAGGATGCGTTGAAGAAA+GGG | 0.487032 | 3.2:-79279871 | MS.gene06485:intron |
ATAAGCGTCAATTTCTCAAT+CGG | 0.497613 | 3.2:-79279742 | MS.gene06485:intron |
CTCATACCATGTCAAGGGTC+CGG | 0.506695 | 3.2:+79279304 | None:intergenic |
GTTGGCTCCATATATATCCT+CGG | 0.510068 | 3.2:-79279633 | MS.gene06485:CDS |
ATGAGGATTGTTGGACTGAC+TGG | 0.512619 | 3.2:-79280075 | MS.gene06485:CDS |
AACACAGATTCAGAGACTCT+TGG | 0.532676 | 3.2:-79279480 | MS.gene06485:CDS |
CGAAGCCCATAATTGTTGTG+TGG | 0.541419 | 3.2:-79279514 | MS.gene06485:CDS |
TGAAGAAAGGGAGCGGCGGA+TGG | 0.543910 | 3.2:-79279859 | MS.gene06485:CDS |
TCTTAGCCTCAAATAACAAA+GGG | 0.545675 | 3.2:+79279549 | None:intergenic |
AGACTTGAATAAATTGGAAA+CGG | 0.547925 | 3.2:+79280029 | None:intergenic |
AAAACGATTTGGCCAAGTCT+GGG | 0.565501 | 3.2:+79279776 | None:intergenic |
GGTCAATGCTCAGATGCCGC+TGG | 0.566232 | 3.2:-79279420 | MS.gene06485:CDS |
TTTGGGAAGTTGTGAAGCTG+TGG | 0.578755 | 3.2:-79279604 | MS.gene06485:CDS |
CGAGGAGGATGGTCGGAACA+AGG | 0.580768 | 3.2:-79279441 | MS.gene06485:CDS |
GTTGTGAAGCTGTGGTTGAA+AGG | 0.585087 | 3.2:-79279596 | MS.gene06485:CDS |
ATCTTAGCCTCAAATAACAA+AGG | 0.586193 | 3.2:+79279548 | None:intergenic |
CCAAAACTCATACCATGTCA+AGG | 0.598156 | 3.2:+79279298 | None:intergenic |
AGTCTAGCGAGGAGGATGGT+CGG | 0.598811 | 3.2:-79279448 | MS.gene06485:CDS |
AGTTGTTGCCGCGTTTGGGG+AGG | 0.599566 | 3.2:-79279831 | MS.gene06485:CDS |
GAAGTTAACAGACCCAGACT+TGG | 0.601753 | 3.2:-79279788 | MS.gene06485:CDS |
AAAAGTTGTTGCCGCGTTTG+GGG | 0.604856 | 3.2:-79279834 | MS.gene06485:CDS |
GGGTCACCGGACCCTTGACA+TGG | 0.606552 | 3.2:-79279310 | MS.gene06485:intron |
GAGGAAATTCTACTAGACAA+TGG | 0.608332 | 3.2:-79279812 | MS.gene06485:CDS |
GATAAGTCTAGCGAGGAGGA+TGG | 0.608356 | 3.2:-79279452 | MS.gene06485:CDS |
AATGCTCAGATGCCGCTGGA+TGG | 0.610763 | 3.2:-79279416 | MS.gene06485:CDS |
GAAGCCCATAATTGTTGTGT+GGG | 0.612377 | 3.2:-79279513 | MS.gene06485:CDS |
GCTGTGGTTGAAAGGTTACA+AGG | 0.613383 | 3.2:-79279588 | MS.gene06485:CDS |
TAGAATTTCCTCCCCAAACG+CGG | 0.631720 | 3.2:+79279823 | None:intergenic |
CAAAACTCATACCATGTCAA+GGG | 0.641999 | 3.2:+79279299 | None:intergenic |
AGGATTGTTGGACTGACTGG+TGG | 0.644760 | 3.2:-79280072 | MS.gene06485:CDS |
GGCAAGAGATAAGTCTAGCG+AGG | 0.649336 | 3.2:-79279459 | MS.gene06485:CDS |
GATGCGTTGAAGAAAGGGAG+CGG | 0.653195 | 3.2:-79279866 | MS.gene06485:CDS |
GATATAGTAATCGACAACAC+TGG | 0.662812 | 3.2:-79279377 | MS.gene06485:CDS |
AAGAGATAAGTCTAGCGAGG+AGG | 0.683714 | 3.2:-79279456 | MS.gene06485:CDS |
GCGTTGAAGAAAGGGAGCGG+CGG | 0.690363 | 3.2:-79279863 | MS.gene06485:CDS |
CTACATCAGCGTCGACAACA+GGG | 0.699636 | 3.2:+79279998 | None:intergenic |
TGGCTCCATATATATCCTCG+GGG | 0.732858 | 3.2:-79279631 | MS.gene06485:CDS |
CTGACTGGTGGAATAGCAAG+TGG | 0.743435 | 3.2:-79280060 | MS.gene06485:CDS |
AACTTCCCAAAAGATCCCCG+AGG | 0.762062 | 3.2:+79279616 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTACTTTATTTTTGAAGTTT+CGG | - | chr3.2:79279622-79279641 | MS.gene06485:CDS | 15.0% |
! | AAATTATAAGCAAAGCCAAA+AGG | + | chr3.2:79279365-79279384 | None:intergenic | 25.0% |
! | AGACTTGAATAAATTGGAAA+CGG | + | chr3.2:79279273-79279292 | None:intergenic | 25.0% |
! | GGTATTCTAAATTTATGTTG+TGG | - | chr3.2:79279578-79279597 | MS.gene06485:CDS | 25.0% |
! | TTATTGGGATTTGAATTACT+AGG | - | chr3.2:79279411-79279430 | MS.gene06485:CDS | 25.0% |
!!! | TTTGGCTTTGCTTATAATTT+GGG | - | chr3.2:79279365-79279384 | MS.gene06485:CDS | 25.0% |
!!! | TTTTGGCTTTGCTTATAATT+TGG | - | chr3.2:79279364-79279383 | MS.gene06485:CDS | 25.0% |
ATAAGCGTCAATTTCTCAAT+CGG | - | chr3.2:79279557-79279576 | MS.gene06485:CDS | 30.0% | |
ATCTTAGCCTCAAATAACAA+AGG | + | chr3.2:79279754-79279773 | None:intergenic | 30.0% | |
TCTTAGCCTCAAATAACAAA+GGG | + | chr3.2:79279753-79279772 | None:intergenic | 30.0% | |
! | TGAACAATTTCAGAACGTTT+TGG | - | chr3.2:79279963-79279982 | MS.gene06485:intron | 30.0% |
!! | TTGGCTTTGCTTATAATTTG+GGG | - | chr3.2:79279366-79279385 | MS.gene06485:CDS | 30.0% |
!!! | AATTTCAGAACGTTTTGGTT+CGG | - | chr3.2:79279968-79279987 | MS.gene06485:intron | 30.0% |
!!! | TAATGGTTGTTTTAGGTTGT+TGG | - | chr3.2:79279648-79279667 | MS.gene06485:intron | 30.0% |
!!! | TTCGTGTTTTTTTCACCTTT+TGG | - | chr3.2:79279347-79279366 | MS.gene06485:CDS | 30.0% |
!!! | TTTTGAAGTTTCGGTTGTAA+TGG | - | chr3.2:79279631-79279650 | MS.gene06485:CDS | 30.0% |
ATCAACCCACACAACAATTA+TGG | + | chr3.2:79279794-79279813 | None:intergenic | 35.0% | |
CAAAACTCATACCATGTCAA+GGG | + | chr3.2:79280003-79280022 | None:intergenic | 35.0% | |
GAGGAAATTCTACTAGACAA+TGG | - | chr3.2:79279487-79279506 | MS.gene06485:CDS | 35.0% | |
GATATAGTAATCGACAACAC+TGG | - | chr3.2:79279922-79279941 | MS.gene06485:intron | 35.0% | |
GTCGTGAGACTTGAATAAAT+TGG | + | chr3.2:79279279-79279298 | None:intergenic | 35.0% | |
TCAACCCACACAACAATTAT+GGG | + | chr3.2:79279793-79279812 | None:intergenic | 35.0% | |
TTGAGAAATTGACGCTTATC+AGG | + | chr3.2:79279556-79279575 | None:intergenic | 35.0% | |
!! | TCGGTTGTAATGGTTGTTTT+AGG | - | chr3.2:79279641-79279660 | MS.gene06485:intron | 35.0% |
!!! | ATTTCAGAACGTTTTGGTTC+GGG | - | chr3.2:79279969-79279988 | MS.gene06485:intron | 35.0% |
AAAAAAGTTGTTGCCGCGTT+TGG | - | chr3.2:79279463-79279482 | MS.gene06485:CDS | 40.0% | |
AAAAAGTTGTTGCCGCGTTT+GGG | - | chr3.2:79279464-79279483 | MS.gene06485:CDS | 40.0% | |
AACACAGATTCAGAGACTCT+TGG | - | chr3.2:79279819-79279838 | MS.gene06485:CDS | 40.0% | |
AAGATCCCCGAGGATATATA+TGG | + | chr3.2:79279676-79279695 | None:intergenic | 40.0% | |
ACTAGGATGCGTTGAAGAAA+GGG | - | chr3.2:79279428-79279447 | MS.gene06485:CDS | 40.0% | |
AGTCTCTGAATCTGTGTTTC+AGG | + | chr3.2:79279817-79279836 | None:intergenic | 40.0% | |
ATTCTCGCTTCATTTACCTC+AGG | - | chr3.2:79280048-79280067 | MS.gene06485:CDS | 40.0% | |
CAGGATCAGCAAAAACGATT+TGG | + | chr3.2:79279537-79279556 | None:intergenic | 40.0% | |
CATACATAGAACAACACCTG+AGG | + | chr3.2:79280067-79280086 | None:intergenic | 40.0% | |
CCAAAACTCATACCATGTCA+AGG | + | chr3.2:79280004-79280023 | None:intergenic | 40.0% | |
GAAGCCCATAATTGTTGTGT+GGG | - | chr3.2:79279786-79279805 | MS.gene06485:CDS | 40.0% | |
TACTAGGATGCGTTGAAGAA+AGG | - | chr3.2:79279427-79279446 | MS.gene06485:CDS | 40.0% | |
TTGGCTCCATATATATCCTC+GGG | - | chr3.2:79279667-79279686 | MS.gene06485:intron | 40.0% | |
! | AAAAACGATTTGGCCAAGTC+TGG | + | chr3.2:79279527-79279546 | None:intergenic | 40.0% |
! | AAAACGATTTGGCCAAGTCT+GGG | + | chr3.2:79279526-79279545 | None:intergenic | 40.0% |
! | ATATATCCTCGGGGATCTTT+TGG | - | chr3.2:79279677-79279696 | MS.gene06485:intron | 40.0% |
! | CCTTGACATGGTATGAGTTT+TGG | - | chr3.2:79280001-79280020 | MS.gene06485:CDS | 40.0% |
! | GTTGGCTCCATATATATCCT+CGG | - | chr3.2:79279666-79279685 | MS.gene06485:intron | 40.0% |
! | TATATCCTCGGGGATCTTTT+GGG | - | chr3.2:79279678-79279697 | MS.gene06485:intron | 40.0% |
! | TTACTCCTTTTACCATCCAG+CGG | + | chr3.2:79279898-79279917 | None:intergenic | 40.0% |
!! | TGACGTCCCTTTGTTATTTG+AGG | - | chr3.2:79279744-79279763 | MS.gene06485:CDS | 40.0% |
AAAAGTTGTTGCCGCGTTTG+GGG | - | chr3.2:79279465-79279484 | MS.gene06485:CDS | 45.0% | |
AAGAGATAAGTCTAGCGAGG+AGG | - | chr3.2:79279843-79279862 | MS.gene06485:CDS | 45.0% | |
AATAACCACCGACCATGAGA+GGG | + | chr3.2:79279396-79279415 | None:intergenic | 45.0% | |
ATGAGGATTGTTGGACTGAC+TGG | - | chr3.2:79279224-79279243 | MS.gene06485:CDS | 45.0% | |
ATTTGGGGAAAACCCTCTCA+TGG | - | chr3.2:79279381-79279400 | MS.gene06485:CDS | 45.0% | |
CGAAGCCCATAATTGTTGTG+TGG | - | chr3.2:79279785-79279804 | MS.gene06485:CDS | 45.0% | |
GAAGTTAACAGACCCAGACT+TGG | - | chr3.2:79279511-79279530 | MS.gene06485:CDS | 45.0% | |
GCTGTGGTTGAAAGGTTACA+AGG | - | chr3.2:79279711-79279730 | MS.gene06485:intron | 45.0% | |
GTTGTGAAGCTGTGGTTGAA+AGG | - | chr3.2:79279703-79279722 | MS.gene06485:intron | 45.0% | |
TAGAATTTCCTCCCCAAACG+CGG | + | chr3.2:79279479-79279498 | None:intergenic | 45.0% | |
TCTCATGGTCGGTGGTTATT+GGG | - | chr3.2:79279396-79279415 | MS.gene06485:CDS | 45.0% | |
TGGCTCCATATATATCCTCG+GGG | - | chr3.2:79279668-79279687 | MS.gene06485:intron | 45.0% | |
TTTGGGAAGTTGTGAAGCTG+TGG | - | chr3.2:79279695-79279714 | MS.gene06485:intron | 45.0% | |
!! | GGTATGAGTTTTGGCGTTCT+AGG | - | chr3.2:79280010-79280029 | MS.gene06485:CDS | 45.0% |
AACTTCCCAAAAGATCCCCG+AGG | + | chr3.2:79279686-79279705 | None:intergenic | 50.0% | |
AGATGCCGCTGGATGGTAAA+AGG | - | chr3.2:79279890-79279909 | MS.gene06485:intron | 50.0% | |
AGGATTGTTGGACTGACTGG+TGG | - | chr3.2:79279227-79279246 | MS.gene06485:CDS | 50.0% | |
CAATAACCACCGACCATGAG+AGG | + | chr3.2:79279397-79279416 | None:intergenic | 50.0% | |
CTCATACCATGTCAAGGGTC+CGG | + | chr3.2:79279998-79280017 | None:intergenic | 50.0% | |
CTCTCATGGTCGGTGGTTAT+TGG | - | chr3.2:79279395-79279414 | MS.gene06485:CDS | 50.0% | |
CTGACTGGTGGAATAGCAAG+TGG | - | chr3.2:79279239-79279258 | MS.gene06485:intron | 50.0% | |
GATAAGTCTAGCGAGGAGGA+TGG | - | chr3.2:79279847-79279866 | MS.gene06485:CDS | 50.0% | |
GATGCGTTGAAGAAAGGGAG+CGG | - | chr3.2:79279433-79279452 | MS.gene06485:CDS | 50.0% | |
GGCAAGAGATAAGTCTAGCG+AGG | - | chr3.2:79279840-79279859 | MS.gene06485:CDS | 50.0% | |
!! | ACTACATCAGCGTCGACAAC+AGG | + | chr3.2:79279305-79279324 | None:intergenic | 50.0% |
!! | CTACATCAGCGTCGACAACA+GGG | + | chr3.2:79279304-79279323 | None:intergenic | 50.0% |
!! | GAGTTTTGGCGTTCTAGGCA+GGG | - | chr3.2:79280015-79280034 | MS.gene06485:CDS | 50.0% |
!! | TGAGTTTTGGCGTTCTAGGC+AGG | - | chr3.2:79280014-79280033 | MS.gene06485:CDS | 50.0% |
!!! | AACGTTTTGGTTCGGGTCAC+CGG | - | chr3.2:79279976-79279995 | MS.gene06485:intron | 50.0% |
AATGCTCAGATGCCGCTGGA+TGG | - | chr3.2:79279883-79279902 | MS.gene06485:intron | 55.0% | |
AGTCTAGCGAGGAGGATGGT+CGG | - | chr3.2:79279851-79279870 | MS.gene06485:CDS | 55.0% | |
GAAAACCCTCTCATGGTCGG+TGG | - | chr3.2:79279388-79279407 | MS.gene06485:CDS | 55.0% | |
GGGGAAAACCCTCTCATGGT+CGG | - | chr3.2:79279385-79279404 | MS.gene06485:CDS | 55.0% | |
AGTTGTTGCCGCGTTTGGGG+AGG | - | chr3.2:79279468-79279487 | MS.gene06485:CDS | 60.0% | |
CGAGGAGGATGGTCGGAACA+AGG | - | chr3.2:79279858-79279877 | MS.gene06485:CDS | 60.0% | |
GCGTTGAAGAAAGGGAGCGG+CGG | - | chr3.2:79279436-79279455 | MS.gene06485:CDS | 60.0% | |
GGTCAATGCTCAGATGCCGC+TGG | - | chr3.2:79279879-79279898 | MS.gene06485:intron | 60.0% | |
TGAAGAAAGGGAGCGGCGGA+TGG | - | chr3.2:79279440-79279459 | MS.gene06485:CDS | 60.0% | |
GGGTCACCGGACCCTTGACA+TGG | - | chr3.2:79279989-79280008 | MS.gene06485:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 79279224 | 79280097 | 79279224 | ID=MS.gene06485 |
chr3.2 | mRNA | 79279224 | 79280097 | 79279224 | ID=MS.gene06485.t1;Parent=MS.gene06485 |
chr3.2 | exon | 79279990 | 79280097 | 79279990 | ID=MS.gene06485.t1.exon1;Parent=MS.gene06485.t1 |
chr3.2 | CDS | 79279990 | 79280097 | 79279990 | ID=cds.MS.gene06485.t1;Parent=MS.gene06485.t1 |
chr3.2 | exon | 79279743 | 79279888 | 79279743 | ID=MS.gene06485.t1.exon2;Parent=MS.gene06485.t1 |
chr3.2 | CDS | 79279743 | 79279888 | 79279743 | ID=cds.MS.gene06485.t1;Parent=MS.gene06485.t1 |
chr3.2 | exon | 79279311 | 79279658 | 79279311 | ID=MS.gene06485.t1.exon3;Parent=MS.gene06485.t1 |
chr3.2 | CDS | 79279311 | 79279658 | 79279311 | ID=cds.MS.gene06485.t1;Parent=MS.gene06485.t1 |
chr3.2 | exon | 79279224 | 79279251 | 79279224 | ID=MS.gene06485.t1.exon4;Parent=MS.gene06485.t1 |
chr3.2 | CDS | 79279224 | 79279251 | 79279224 | ID=cds.MS.gene06485.t1;Parent=MS.gene06485.t1 |
Gene Sequence |
Protein sequence |