AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055818


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055818.t1 MTR_2g090285 97.287 516 14 0 1 516 1 516 0.0 1038
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055818.t1 AT4G28260 42.188 512 263 12 16 503 13 515 1.73e-131 392
MS.gene055818.t1 AT4G28260 42.188 512 263 12 16 503 13 515 1.73e-131 392

Find 113 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTGAGTTACGTGAAAA+TGG 0.149151 2.1:-10809877 MS.gene055818:CDS
CGGTTACCATTTACAGTTTC+CGG 0.175675 2.1:+10809661 None:intergenic
ATTTGAAATGGGTGGGAAAT+TGG 0.183618 2.1:-10809995 None:intergenic
GCTGAGAAGGATGGCTCTTT+AGG 0.220704 2.1:-10809424 MS.gene055818:CDS
AATCAAAATGCTCGTCAAAA+AGG 0.245244 2.1:-10808424 MS.gene055818:CDS
AAACCAACTTTGTTTCTAAC+AGG 0.254527 2.1:-10809057 MS.gene055818:CDS
CGACCCAAATCATAACTATA+TGG 0.283138 2.1:+10809301 None:intergenic
TGGGACAGAGAGCACAATTT+TGG 0.288956 2.1:+10808292 None:intergenic
GGAATGAAATTAGAAGAATT+TGG 0.291528 2.1:-10809402 MS.gene055818:CDS
CTGAGAAGGATGGCTCTTTA+GGG 0.298151 2.1:-10809423 MS.gene055818:CDS
GATGTGAAAGTTAGGAAAAT+TGG 0.302708 2.1:-10809472 MS.gene055818:CDS
TTTCCCATATAGTTATGATT+TGG 0.310945 2.1:-10809305 MS.gene055818:CDS
AATATAAGACCATCACTAAA+AGG 0.331956 2.1:+10809715 None:intergenic
TTCCCATATAGTTATGATTT+GGG 0.338390 2.1:-10809304 MS.gene055818:CDS
TTGTTTCTAACAGGGCTATC+AGG 0.342038 2.1:-10809048 MS.gene055818:CDS
TTAGCTTCAACAATCTATTT+CGG 0.343141 2.1:+10809641 None:intergenic
AAAGAACCGGAAACTGTAAA+TGG 0.357278 2.1:-10809667 MS.gene055818:CDS
TTAGAAGAATTTGGTGTGAA+TGG 0.362486 2.1:-10809393 MS.gene055818:CDS
TGCTGCAGTCGGAATCCAAC+TGG 0.364769 2.1:-10808905 MS.gene055818:CDS
CAGAAGAGTCTCCACCTTTG+AGG 0.384028 2.1:-10809129 MS.gene055818:CDS
AAGCTATTGATGTGAAAGTT+AGG 0.384527 2.1:-10809480 MS.gene055818:CDS
GATTTGCAGAATTGCTCAAT+TGG 0.387845 2.1:-10807705 MS.gene055818:CDS
ATGGGTGGGAAATTGGAATT+GGG 0.394636 2.1:-10809988 MS.gene055818:CDS
CTGGAAGATGAGAGGGAAAG+TGG 0.398975 2.1:-10809217 MS.gene055818:CDS
GCATTTCTGAATTTGAAAAC+TGG 0.404337 2.1:-10808938 MS.gene055818:CDS
TTCTGCCAGGTTTGCTGAGA+AGG 0.410140 2.1:-10809437 MS.gene055818:CDS
ATTTGAAGGGTAAGCTTCAT+AGG 0.414458 2.1:-10809786 MS.gene055818:CDS
TGTCAACAAAACATGATTCC+TGG 0.416827 2.1:-10808974 MS.gene055818:CDS
ATCCTCCTCTATGCTAGAAC+TGG 0.417147 2.1:-10809236 MS.gene055818:CDS
AATGGGTGGGAAATTGGAAT+TGG 0.429413 2.1:-10809989 MS.gene055818:CDS
TGTGTATCATCCCTCGCAAT+TGG 0.430510 2.1:+10809550 None:intergenic
AGAATTTGGTGTGAATGGTT+AGG 0.432596 2.1:-10809388 MS.gene055818:CDS
TCACTAAAAGGCCACGGATT+CGG 0.440140 2.1:+10809727 None:intergenic
TGTCCAGAGTGTCAAGGTGC+TGG 0.444181 2.1:-10808343 MS.gene055818:CDS
AAAGTTAGGAAAATTGGCTT+GGG 0.446570 2.1:-10809466 MS.gene055818:CDS
ATCTGAGGGTGATAAAGAAC+CGG 0.447512 2.1:-10809680 MS.gene055818:CDS
GGACAAAGTGCTTGAGGTTG+AGG 0.448153 2.1:-10809278 MS.gene055818:CDS
TTCTTTGATAATTCATCTGA+GGG 0.449841 2.1:-10809694 MS.gene055818:CDS
ATTTGCAGAATTGCTCAATT+GGG 0.460348 2.1:-10807704 MS.gene055818:CDS
GACCCAAATCATAACTATAT+GGG 0.464644 2.1:+10809302 None:intergenic
CATATAGTTATGATTTGGGT+CGG 0.470784 2.1:-10809300 MS.gene055818:CDS
AATTGGGTTTCATTTCCCTT+CGG 0.472950 2.1:-10807688 MS.gene055818:CDS
ACATTGAGTTACGTGAAAAT+GGG 0.473761 2.1:-10809876 MS.gene055818:CDS
AAAATTGTGCTCTCTGTCCC+AGG 0.484115 2.1:-10808290 MS.gene055818:intron
GAAAGTTAGGAAAATTGGCT+TGG 0.484708 2.1:-10809467 MS.gene055818:CDS
CAGGTTCTGGTAAAGAAGAC+AGG 0.485349 2.1:-10808384 MS.gene055818:CDS
GCCAGGTTTGCTGAGAAGGA+TGG 0.490722 2.1:-10809433 MS.gene055818:CDS
GCCATCCTTCTCAGCAAACC+TGG 0.495465 2.1:+10809432 None:intergenic
TTGGGGTCTTGTTCGAATGT+TGG 0.498190 2.1:-10809970 MS.gene055818:CDS
ATTTGGCCTGTGTCATACAC+TGG 0.499909 2.1:-10808489 MS.gene055818:CDS
TCATTCTACAACGCAAAGAA+TGG 0.501399 2.1:-10807743 MS.gene055818:CDS
AGACCAGCACCTTGACACTC+TGG 0.506407 2.1:+10808340 None:intergenic
TCGAATAATCTGAGAGAGAA+AGG 0.511103 2.1:-10809943 MS.gene055818:CDS
AGCCCTGTTAGAAACAAAGT+TGG 0.523096 2.1:+10809054 None:intergenic
AATTGTGCGAATGTTGCATA+GGG 0.527136 2.1:-10807487 None:intergenic
ATATAGTTATGATTTGGGTC+GGG 0.529170 2.1:-10809299 MS.gene055818:CDS
GCTTGGGGAAGATTTCTGCC+AGG 0.529306 2.1:-10809450 MS.gene055818:CDS
CGACAGTTGTCGTGCCATTG+TGG 0.532307 2.1:-10809605 MS.gene055818:CDS
CTGAGACACATTAGAGCTCA+AGG 0.536769 2.1:-10809907 MS.gene055818:CDS
GTTCTAGCATAGAGGAGGAT+GGG 0.540583 2.1:+10809239 None:intergenic
TGATCAAGCGTCAATGTTGA+GGG 0.542843 2.1:+10809100 None:intergenic
GAATGATCTTTAATTTCAGT+CGG 0.543899 2.1:+10807760 None:intergenic
TTGATCAAGCGTCAATGTTG+AGG 0.546595 2.1:+10809099 None:intergenic
TCTGATCATTGCAGATGGGT+TGG 0.549025 2.1:-10808320 MS.gene055818:CDS
ATTCTTTGATAATTCATCTG+AGG 0.549643 2.1:-10809695 MS.gene055818:CDS
ATCTTCCAGTTCTAGCATAG+AGG 0.549775 2.1:+10809231 None:intergenic
TCACTTGCAATCTTCAAACA+TGG 0.550872 2.1:+10809502 None:intergenic
GCTGGTCTGATCATTGCAGA+TGG 0.553045 2.1:-10808325 MS.gene055818:CDS
AGTTCTAGCATAGAGGAGGA+TGG 0.554745 2.1:+10809238 None:intergenic
TGTTGTGTATGATCATTTGA+AGG 0.555077 2.1:-10809800 MS.gene055818:CDS
TTGTTGAAGCTAATTGAAAG+TGG 0.555460 2.1:-10809631 MS.gene055818:CDS
GGGTCGGGACAAAGTGCTTG+AGG 0.558057 2.1:-10809284 MS.gene055818:CDS
GAGTCTCCACCTTTGAGGAA+TGG 0.558630 2.1:-10809124 MS.gene055818:CDS
GCTAGAACTGGAAGATGAGA+GGG 0.564301 2.1:-10809224 MS.gene055818:CDS
GAATTGTGCGAATGTTGCAT+AGG 0.564678 2.1:-10807488 None:intergenic
GCTGCAGTCGGAATCCAACT+GGG 0.569349 2.1:-10808904 MS.gene055818:CDS
AATGCTGCTACATCTTTACC+AGG 0.569814 2.1:+10808956 None:intergenic
ACAAGCTGATGGTTCTATGT+TGG 0.573138 2.1:-10809530 MS.gene055818:CDS
CTGGTCTGATCATTGCAGAT+GGG 0.574511 2.1:-10808324 MS.gene055818:CDS
TGCTAGAACTGGAAGATGAG+AGG 0.578965 2.1:-10809225 MS.gene055818:CDS
GGTTTGAAGAAGCTGACTGT+TGG 0.581611 2.1:+10809075 None:intergenic
TTCTAACAGGGCTATCAGGA+AGG 0.582988 2.1:-10809044 MS.gene055818:CDS
GCTATCTCTTCAGATTCCGA+AGG 0.584664 2.1:+10807672 None:intergenic
AAAATCATGCTCTTGAACCT+CGG 0.590936 2.1:+10809339 None:intergenic
CTTTGATGAAGCCGAATCCG+TGG 0.595795 2.1:-10809738 MS.gene055818:CDS
AACCAACTTTGTTTCTAACA+GGG 0.597215 2.1:-10809056 MS.gene055818:CDS
AAAAGAACCATCGTCTGACG+TGG 0.599417 2.1:-10809185 MS.gene055818:CDS
GCTTTGCTTACAGGAAAATG+TGG 0.604649 2.1:-10807566 MS.gene055818:intron
GTTGTGTATGATCATTTGAA+GGG 0.607449 2.1:-10809799 MS.gene055818:CDS
GAAGAGTAGTTTGCTGCAGT+CGG 0.607859 2.1:-10808916 MS.gene055818:CDS
AGGGATGATACACAAGCTGA+TGG 0.625901 2.1:-10809541 MS.gene055818:CDS
TTCCAGTTCTAGCATAGAGG+AGG 0.629165 2.1:+10809234 None:intergenic
CAGATGCTCAACCAATTGCG+AGG 0.633041 2.1:-10809561 MS.gene055818:CDS
CTCTTCATTAAAAGCCACAA+TGG 0.633534 2.1:+10809591 None:intergenic
AGATGCTCAACCAATTGCGA+GGG 0.635364 2.1:-10809560 MS.gene055818:CDS
AGACCATCACTAAAAGGCCA+CGG 0.635447 2.1:+10809721 None:intergenic
GTTGAGGGTCCATTCCTCAA+AGG 0.639117 2.1:+10809115 None:intergenic
GAGGGTCCATTCCTCAAAGG+TGG 0.640328 2.1:+10809118 None:intergenic
TGGGTGGGAAATTGGAATTG+GGG 0.642436 2.1:-10809987 MS.gene055818:CDS
CTATCTCTTCAGATTCCGAA+GGG 0.642532 2.1:+10807673 None:intergenic
AGGTTCTGGTAAAGAAGACA+GGG 0.650035 2.1:-10808383 MS.gene055818:CDS
AAGATGTTGATGAAATCCGC+AGG 0.650707 2.1:-10809162 MS.gene055818:CDS
ATCTGAGAGAGAAAGGTGCG+AGG 0.656790 2.1:-10809936 MS.gene055818:CDS
CTTCTGAAGCATACTGCCTG+CGG 0.661695 2.1:+10809146 None:intergenic
ACATCTTCCACGTCAGACGA+TGG 0.661723 2.1:+10809178 None:intergenic
CTATCAGGAAGGCAATCAGA+CGG 0.662170 2.1:-10809033 MS.gene055818:CDS
GAGTATCCAGTGTATGACAC+AGG 0.674182 2.1:+10808483 None:intergenic
TCGTGCTGATGACGAGCATG+TGG 0.675216 2.1:-10807518 MS.gene055818:CDS
GGAATCTGAAGAGATAGCTG+AGG 0.676818 2.1:-10807667 MS.gene055818:intron
TGAGACACATTAGAGCTCAA+GGG 0.685982 2.1:-10809906 MS.gene055818:CDS
AAGTTAGGAAAATTGGCTTG+GGG 0.691599 2.1:-10809465 MS.gene055818:CDS
TAGTCAACAAGATGACGCCG+AGG 0.718635 2.1:-10809356 MS.gene055818:CDS
CTGCAGTCGGAATCCAACTG+GGG 0.724399 2.1:-10808903 MS.gene055818:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAAGAAATCATTTTTT+TGG - chr2.1:10809471-10809490 MS.gene055818:CDS 10.0%
!! TGTTAAAAAAATAGTTCATT+TGG - chr2.1:10809667-10809686 MS.gene055818:CDS 15.0%
!!! TTTTTTTTTTTCCAAATACA+AGG - chr2.1:10809419-10809438 MS.gene055818:CDS 15.0%
!! CTGTTTGGATAAATTAAAAA+GGG + chr2.1:10808925-10808944 None:intergenic 20.0%
!! TCTGTTTGGATAAATTAAAA+AGG + chr2.1:10808926-10808945 None:intergenic 20.0%
!! TCTTCTAACATATATTGTAA+TGG - chr2.1:10809889-10809908 MS.gene055818:CDS 20.0%
!! TTATATTTGCATTTATATGC+AGG - chr2.1:10808950-10808969 MS.gene055818:CDS 20.0%
!! TTTCATCTAAACATAGATAA+TGG - chr2.1:10809855-10809874 MS.gene055818:CDS 20.0%
!!! AGCATTGATATCTTAATTTT+AGG - chr2.1:10809630-10809649 MS.gene055818:CDS 20.0%
!!! CTCTAAAATGAAAAACTATT+AGG - chr2.1:10809379-10809398 MS.gene055818:CDS 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG - chr2.1:10809315-10809334 MS.gene055818:CDS 20.0%
! AATATAAGACCATCACTAAA+AGG + chr2.1:10807765-10807784 None:intergenic 25.0%
! ATAATATGAAGGATTAGGAA+AGG + chr2.1:10809234-10809253 None:intergenic 25.0%
! GGAATGAAATTAGAAGAATT+TGG - chr2.1:10808075-10808094 MS.gene055818:intron 25.0%
! TAGAAAATGCTGAAACAAAT+GGG + chr2.1:10809260-10809279 None:intergenic 25.0%
! TGATTTATAACTAGTTCATG+TGG + chr2.1:10809450-10809469 None:intergenic 25.0%
! TTAGAAAATGCTGAAACAAA+TGG + chr2.1:10809261-10809280 None:intergenic 25.0%
! TTAGCTTCAACAATCTATTT+CGG + chr2.1:10807839-10807858 None:intergenic 25.0%
! TTCCCATATAGTTATGATTT+GGG - chr2.1:10808173-10808192 MS.gene055818:intron 25.0%
! TTTCCCATATAGTTATGATT+TGG - chr2.1:10808172-10808191 MS.gene055818:intron 25.0%
! TTTCCTAATCCTTCATATTA+TGG - chr2.1:10809233-10809252 MS.gene055818:CDS 25.0%
!! ATTCTTTGATAATTCATCTG+AGG - chr2.1:10807782-10807801 MS.gene055818:intron 25.0%
!! GAATGATCTTTAATTTCAGT+CGG + chr2.1:10809720-10809739 None:intergenic 25.0%
!! GCAAATATAACTTTTCTGTT+TGG + chr2.1:10808940-10808959 None:intergenic 25.0%
!! TAGAACTGCAACATTTTTAT+TGG + chr2.1:10809939-10809958 None:intergenic 25.0%
!! TTCTTTGATAATTCATCTGA+GGG - chr2.1:10807783-10807802 MS.gene055818:intron 25.0%
!!! TTTTTTTTCCAAATACAAGG+AGG - chr2.1:10809422-10809441 MS.gene055818:CDS 25.0%
AAAAAGATTGTAACAGGTTC+TGG - chr2.1:10809080-10809099 MS.gene055818:CDS 30.0%
AAAGGGAAATGCTAACTTAA+TGG + chr2.1:10808908-10808927 None:intergenic 30.0%
AAGCTATTGATGTGAAAGTT+AGG - chr2.1:10807997-10808016 MS.gene055818:intron 30.0%
AATCAAAATGCTCGTCAAAA+AGG - chr2.1:10809053-10809072 MS.gene055818:CDS 30.0%
ACATTGAGTTACGTGAAAAT+GGG - chr2.1:10807601-10807620 MS.gene055818:intron 30.0%
AGAAAATGCTGAAACAAATG+GGG + chr2.1:10809259-10809278 None:intergenic 30.0%
AGGAATCCAAAGACAATATA+GGG + chr2.1:10809607-10809626 None:intergenic 30.0%
ATCAAAATGCTCGTCAAAAA+GGG - chr2.1:10809054-10809073 MS.gene055818:CDS 30.0%
ATTAAGATATCAATGCTCAG+AGG + chr2.1:10809627-10809646 None:intergenic 30.0%
ATTTGCAGAATTGCTCAATT+GGG - chr2.1:10809773-10809792 MS.gene055818:CDS 30.0%
GACCCAAATCATAACTATAT+GGG + chr2.1:10808178-10808197 None:intergenic 30.0%
GATGTGAAAGTTAGGAAAAT+TGG - chr2.1:10808005-10808024 MS.gene055818:intron 30.0%
GCATTTCTGAATTTGAAAAC+TGG - chr2.1:10808539-10808558 MS.gene055818:intron 30.0%
GTTGTGTATGATCATTTGAA+GGG - chr2.1:10807678-10807697 MS.gene055818:CDS 30.0%
TACATTGAGTTACGTGAAAA+TGG - chr2.1:10807600-10807619 MS.gene055818:intron 30.0%
TGTTGTGTATGATCATTTGA+AGG - chr2.1:10807677-10807696 MS.gene055818:CDS 30.0%
TTGTTGAAGCTAATTGAAAG+TGG - chr2.1:10807846-10807865 MS.gene055818:intron 30.0%
! AAAGTTAGGAAAATTGGCTT+GGG - chr2.1:10808011-10808030 MS.gene055818:intron 30.0%
! ATATAGTTATGATTTGGGTC+GGG - chr2.1:10808178-10808197 MS.gene055818:intron 30.0%
! CATATAGTTATGATTTGGGT+CGG - chr2.1:10808177-10808196 MS.gene055818:intron 30.0%
! TTTTCACGTAACTCAATGTA+AGG + chr2.1:10807600-10807619 None:intergenic 30.0%
!! AAACCAACTTTGTTTCTAAC+AGG - chr2.1:10808420-10808439 MS.gene055818:CDS 30.0%
!! AACCAACTTTGTTTCTAACA+GGG - chr2.1:10808421-10808440 MS.gene055818:CDS 30.0%
!! ACTACAGACAGTTATTTTCT+TGG + chr2.1:10808872-10808891 None:intergenic 30.0%
!! TTAGAAGAATTTGGTGTGAA+TGG - chr2.1:10808084-10808103 MS.gene055818:intron 30.0%
AAAATCATGCTCTTGAACCT+CGG + chr2.1:10808141-10808160 None:intergenic 35.0%
AAAGAACCGGAAACTGTAAA+TGG - chr2.1:10807810-10807829 MS.gene055818:intron 35.0%
AATGCACGTGTTCAAAACTT+CGG - chr2.1:10808715-10808734 MS.gene055818:intron 35.0%
AATTGGGTTTCATTTCCCTT+CGG - chr2.1:10809789-10809808 MS.gene055818:CDS 35.0%
ATCCATGTAATGAACAAACC+TGG + chr2.1:10809208-10809227 None:intergenic 35.0%
ATTTGAAGGGTAAGCTTCAT+AGG - chr2.1:10807691-10807710 MS.gene055818:CDS 35.0%
CGACCCAAATCATAACTATA+TGG + chr2.1:10808179-10808198 None:intergenic 35.0%
CTCTTCATTAAAAGCCACAA+TGG + chr2.1:10807889-10807908 None:intergenic 35.0%
GAAAGTTAGGAAAATTGGCT+TGG - chr2.1:10808010-10808029 MS.gene055818:intron 35.0%
GAGGAATCCAAAGACAATAT+AGG + chr2.1:10809608-10809627 None:intergenic 35.0%
GATTTGCAGAATTGCTCAAT+TGG - chr2.1:10809772-10809791 MS.gene055818:CDS 35.0%
GGGAAGAAAAAGATTGTAAC+AGG - chr2.1:10809074-10809093 MS.gene055818:CDS 35.0%
TAACTTAATGGCACAAGTCA+AGG + chr2.1:10808896-10808915 None:intergenic 35.0%
TCACTTGCAATCTTCAAACA+TGG + chr2.1:10807978-10807997 None:intergenic 35.0%
TCATTCTACAACGCAAAGAA+TGG - chr2.1:10809734-10809753 MS.gene055818:CDS 35.0%
TCCATGTAATGAACAAACCT+GGG + chr2.1:10809207-10809226 None:intergenic 35.0%
TCGAATAATCTGAGAGAGAA+AGG - chr2.1:10807534-10807553 MS.gene055818:CDS 35.0%
TGTCAACAAAACATGATTCC+TGG - chr2.1:10808503-10808522 MS.gene055818:CDS 35.0%
! AAAGCACCCTATATTGTCTT+TGG - chr2.1:10809598-10809617 MS.gene055818:CDS 35.0%
! ATTGTAATGGCTTTGCTTAC+AGG - chr2.1:10809902-10809921 MS.gene055818:CDS 35.0%
! ATTTTTCATTGAGTCATGCC+AGG - chr2.1:10808753-10808772 MS.gene055818:intron 35.0%
! CATTGTGGCTTTTAATGAAG+AGG - chr2.1:10807887-10807906 MS.gene055818:intron 35.0%
! GGCTTTTCATGTGTTTCATT+TGG - chr2.1:10808971-10808990 MS.gene055818:CDS 35.0%
! TGAAATGATTTTACCCCAGT+TGG + chr2.1:10808590-10808609 None:intergenic 35.0%
! TTTTTCATTGAGTCATGCCA+GGG - chr2.1:10808754-10808773 MS.gene055818:intron 35.0%
!! AAGTTAGGAAAATTGGCTTG+GGG - chr2.1:10808012-10808031 MS.gene055818:intron 35.0%
!! AGAATTTGGTGTGAATGGTT+AGG - chr2.1:10808089-10808108 MS.gene055818:intron 35.0%
AATGCTGCTACATCTTTACC+AGG + chr2.1:10808524-10808543 None:intergenic 40.0%
AGCCCTGTTAGAAACAAAGT+TGG + chr2.1:10808426-10808445 None:intergenic 40.0%
ATCTGAGGGTGATAAAGAAC+CGG - chr2.1:10807797-10807816 MS.gene055818:intron 40.0%
ATGGGTGGGAAATTGGAATT+GGG - chr2.1:10807489-10807508 MS.gene055818:CDS 40.0%
ATGTGGTACCTCCTTGTATT+TGG + chr2.1:10809433-10809452 None:intergenic 40.0%
CAAATGGGGCCATAATATGA+AGG + chr2.1:10809245-10809264 None:intergenic 40.0%
CGGTTACCATTTACAGTTTC+CGG + chr2.1:10807819-10807838 None:intergenic 40.0%
CTATCTCTTCAGATTCCGAA+GGG + chr2.1:10809807-10809826 None:intergenic 40.0%
GCTTTGCTTACAGGAAAATG+TGG - chr2.1:10809911-10809930 MS.gene055818:CDS 40.0%
GGGCCATAATATGAAGGATT+AGG + chr2.1:10809239-10809258 None:intergenic 40.0%
TGAGACACATTAGAGCTCAA+GGG - chr2.1:10807571-10807590 MS.gene055818:intron 40.0%
TGATCAAGCGTCAATGTTGA+GGG + chr2.1:10808380-10808399 None:intergenic 40.0%
TTGATCAAGCGTCAATGTTG+AGG + chr2.1:10808381-10808400 None:intergenic 40.0%
! AAGATGTTGATGAAATCCGC+AGG - chr2.1:10808315-10808334 MS.gene055818:CDS 40.0%
! ACAAGCTGATGGTTCTATGT+TGG - chr2.1:10807947-10807966 MS.gene055818:intron 40.0%
! AGGTTCTGGTAAAGAAGACA+GGG - chr2.1:10809094-10809113 MS.gene055818:CDS 40.0%
! ATCTTCCAGTTCTAGCATAG+AGG + chr2.1:10808249-10808268 None:intergenic 40.0%
! TCCCAGGTTTGTTCATTACA+TGG - chr2.1:10809203-10809222 MS.gene055818:CDS 40.0%
! TCTGTGTTTTGTGTCTTGCT+CGG - chr2.1:10807640-10807659 MS.gene055818:intron 40.0%
!! GGTTCAAGAGCATGATTTTG+CGG - chr2.1:10808142-10808161 MS.gene055818:intron 40.0%
!! TTGTTTCTAACAGGGCTATC+AGG - chr2.1:10808429-10808448 MS.gene055818:CDS 40.0%
AAAAGAACCATCGTCTGACG+TGG - chr2.1:10808292-10808311 MS.gene055818:CDS 45.0%
AAAATTGTGCTCTCTGTCCC+AGG - chr2.1:10809187-10809206 MS.gene055818:CDS 45.0%
AGACCATCACTAAAAGGCCA+CGG + chr2.1:10807759-10807778 None:intergenic 45.0%
AGATGCTCAACCAATTGCGA+GGG - chr2.1:10807917-10807936 MS.gene055818:intron 45.0%
AGGGATGATACACAAGCTGA+TGG - chr2.1:10807936-10807955 MS.gene055818:intron 45.0%
ATCCTCCTCTATGCTAGAAC+TGG - chr2.1:10808241-10808260 MS.gene055818:intron 45.0%
ATTTGGCCTGTGTCATACAC+TGG - chr2.1:10808988-10809007 MS.gene055818:CDS 45.0%
CTATCAGGAAGGCAATCAGA+CGG - chr2.1:10808444-10808463 MS.gene055818:CDS 45.0%
CTGAGAAGGATGGCTCTTTA+GGG - chr2.1:10808054-10808073 MS.gene055818:intron 45.0%
CTGAGACACATTAGAGCTCA+AGG - chr2.1:10807570-10807589 MS.gene055818:intron 45.0%
CTGGTCTGATCATTGCAGAT+GGG - chr2.1:10809153-10809172 MS.gene055818:CDS 45.0%
GAGTATCCAGTGTATGACAC+AGG + chr2.1:10808997-10809016 None:intergenic 45.0%
GCTAGAACTGGAAGATGAGA+GGG - chr2.1:10808253-10808272 MS.gene055818:intron 45.0%
GCTATCTCTTCAGATTCCGA+AGG + chr2.1:10809808-10809827 None:intergenic 45.0%
GGAATCTGAAGAGATAGCTG+AGG - chr2.1:10809810-10809829 MS.gene055818:CDS 45.0%
GGTTTGAAGAAGCTGACTGT+TGG + chr2.1:10808405-10808424 None:intergenic 45.0%
GTTCTAGCATAGAGGAGGAT+GGG + chr2.1:10808241-10808260 None:intergenic 45.0%
TCACTAAAAGGCCACGGATT+CGG + chr2.1:10807753-10807772 None:intergenic 45.0%
TCTGATCATTGCAGATGGGT+TGG - chr2.1:10809157-10809176 MS.gene055818:CDS 45.0%
TGCTAGAACTGGAAGATGAG+AGG - chr2.1:10808252-10808271 MS.gene055818:intron 45.0%
TGGGTGGGAAATTGGAATTG+GGG - chr2.1:10807490-10807509 MS.gene055818:CDS 45.0%
TGTGTATCATCCCTCGCAAT+TGG + chr2.1:10807930-10807949 None:intergenic 45.0%
TTCTAACAGGGCTATCAGGA+AGG - chr2.1:10808433-10808452 MS.gene055818:CDS 45.0%
! AATCCGTGGCCTTTTAGTGA+TGG - chr2.1:10807753-10807772 MS.gene055818:CDS 45.0%
! AGTTCTAGCATAGAGGAGGA+TGG + chr2.1:10808242-10808261 None:intergenic 45.0%
! CAGGTTCTGGTAAAGAAGAC+AGG - chr2.1:10809093-10809112 MS.gene055818:CDS 45.0%
! TTCCAGTTCTAGCATAGAGG+AGG + chr2.1:10808246-10808265 None:intergenic 45.0%
!! GAAGAGTAGTTTGCTGCAGT+CGG - chr2.1:10808561-10808580 MS.gene055818:intron 45.0%
!! GTTTTCTGTCCAGAGTGTCA+AGG - chr2.1:10809128-10809147 MS.gene055818:CDS 45.0%
!! TACTTCCTTAACTTGTGCCC+TGG + chr2.1:10808774-10808793 None:intergenic 45.0%
!! TGGGACAGAGAGCACAATTT+TGG + chr2.1:10809188-10809207 None:intergenic 45.0%
!! TTGGGGTCTTGTTCGAATGT+TGG - chr2.1:10807507-10807526 MS.gene055818:CDS 45.0%
ACATCTTCCACGTCAGACGA+TGG + chr2.1:10808302-10808321 None:intergenic 50.0%
CAGAAGAGTCTCCACCTTTG+AGG - chr2.1:10808348-10808367 MS.gene055818:CDS 50.0%
CAGATGCTCAACCAATTGCG+AGG - chr2.1:10807916-10807935 MS.gene055818:intron 50.0%
CTGGAAGATGAGAGGGAAAG+TGG - chr2.1:10808260-10808279 MS.gene055818:intron 50.0%
CTTTGATGAAGCCGAATCCG+TGG - chr2.1:10807739-10807758 MS.gene055818:CDS 50.0%
GCTGAGAAGGATGGCTCTTT+AGG - chr2.1:10808053-10808072 MS.gene055818:intron 50.0%
GTTGAGGGTCCATTCCTCAA+AGG + chr2.1:10808365-10808384 None:intergenic 50.0%
TAGTCAACAAGATGACGCCG+AGG - chr2.1:10808121-10808140 MS.gene055818:intron 50.0%
TCATGCCAGGGCACAAGTTA+AGG - chr2.1:10808766-10808785 MS.gene055818:intron 50.0%
! ATCTGAGAGAGAAAGGTGCG+AGG - chr2.1:10807541-10807560 MS.gene055818:CDS 50.0%
! GAGTCTCCACCTTTGAGGAA+TGG - chr2.1:10808353-10808372 MS.gene055818:CDS 50.0%
! GCTGGTCTGATCATTGCAGA+TGG - chr2.1:10809152-10809171 MS.gene055818:CDS 50.0%
! GGACAAAGTGCTTGAGGTTG+AGG - chr2.1:10808199-10808218 MS.gene055818:intron 50.0%
!! CTTCTGAAGCATACTGCCTG+CGG + chr2.1:10808334-10808353 None:intergenic 50.0%
!! TTCTGCCAGGTTTGCTGAGA+AGG - chr2.1:10808040-10808059 MS.gene055818:intron 50.0%
AGACCAGCACCTTGACACTC+TGG + chr2.1:10809140-10809159 None:intergenic 55.0%
CTGCAGTCGGAATCCAACTG+GGG - chr2.1:10808574-10808593 MS.gene055818:intron 55.0%
GAGGGTCCATTCCTCAAAGG+TGG + chr2.1:10808362-10808381 None:intergenic 55.0%
GCCATCCTTCTCAGCAAACC+TGG + chr2.1:10808048-10808067 None:intergenic 55.0%
GCTGCAGTCGGAATCCAACT+GGG - chr2.1:10808573-10808592 MS.gene055818:intron 55.0%
GCTTGGGGAAGATTTCTGCC+AGG - chr2.1:10808027-10808046 MS.gene055818:intron 55.0%
TGCTGCAGTCGGAATCCAAC+TGG - chr2.1:10808572-10808591 MS.gene055818:intron 55.0%
! CGACAGTTGTCGTGCCATTG+TGG - chr2.1:10807872-10807891 MS.gene055818:intron 55.0%
! TCGTGCTGATGACGAGCATG+TGG - chr2.1:10809959-10809978 MS.gene055818:CDS 55.0%
! TGTCCAGAGTGTCAAGGTGC+TGG - chr2.1:10809134-10809153 MS.gene055818:CDS 55.0%
!! GCCAGGTTTGCTGAGAAGGA+TGG - chr2.1:10808044-10808063 MS.gene055818:intron 55.0%
! GGGTCGGGACAAAGTGCTTG+AGG - chr2.1:10808193-10808212 MS.gene055818:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 10807489 10810010 10807489 ID=MS.gene055818
chr2.1 mRNA 10807489 10810010 10807489 ID=MS.gene055818.t1;Parent=MS.gene055818
chr2.1 exon 10808904 10810010 10808904 ID=MS.gene055818.t1.exon1;Parent=MS.gene055818.t1
chr2.1 CDS 10808904 10810010 10808904 ID=cds.MS.gene055818.t1;Parent=MS.gene055818.t1
chr2.1 exon 10808291 10808527 10808291 ID=MS.gene055818.t1.exon2;Parent=MS.gene055818.t1
chr2.1 CDS 10808291 10808527 10808291 ID=cds.MS.gene055818.t1;Parent=MS.gene055818.t1
chr2.1 exon 10807668 10807787 10807668 ID=MS.gene055818.t1.exon3;Parent=MS.gene055818.t1
chr2.1 CDS 10807668 10807787 10807668 ID=cds.MS.gene055818.t1;Parent=MS.gene055818.t1
chr2.1 exon 10807489 10807575 10807489 ID=MS.gene055818.t1.exon4;Parent=MS.gene055818.t1
chr2.1 CDS 10807489 10807575 10807489 ID=cds.MS.gene055818.t1;Parent=MS.gene055818.t1
Gene Sequence

>MS.gene055818

ATGGGTGGGAAATTGGAATTGGGGTCTTGTTCGAATGTTGGTGCTTCGAATAATCTGAGAGAGAAAGGTGCGAGGATTATACTGAGACACATTAGAGCTCAAGGGCATCCTTACATTGAGTTACGTGAAAATGGGAAAAAGTTTATATATTTCTGTGTTTTGTGTCTTGCTCGGTGTTATAGTGATAGTGTTGTGTATGATCATTTGAAGGGTAAGCTTCATAGGTCTAGATTAGATTATGCTAGACGTACTTTGATGAAGCCGAATCCGTGGCCTTTTAGTGATGGTCTTATATTCTTTGATAATTCATCTGAGGGTGATAAAGAACCGGAAACTGTAAATGGTAACCGAAATAGATTGTTGAAGCTAATTGAAAGTGGCAACGACAGTTGTCGTGCCATTGTGGCTTTTAATGAAGAGGCTCAGTCAGATGCTCAACCAATTGCGAGGGATGATACACAAGCTGATGGTTCTATGTTGGTAATTCCATGTTTGAAGATTGCAAGTGAAGCTATTGATGTGAAAGTTAGGAAAATTGGCTTGGGGAAGATTTCTGCCAGGTTTGCTGAGAAGGATGGCTCTTTAGGGAATGAAATTAGAAGAATTTGGTGTGAATGGTTAGGAAAAGAGAATAGTCAACAAGATGACGCCGAGGTTCAAGAGCATGATTTTGCGGTTGTAGTTTTCCCATATAGTTATGATTTGGGTCGGGACAAAGTGCTTGAGGTTGAGGATGCTAAGTCATTACTCCCATCCTCCTCTATGCTAGAACTGGAAGATGAGAGGGAAAGTGGTAGAAAGAGAAAAGAACCATCGTCTGACGTGGAAGATGTTGATGAAATCCGCAGGCAGTATGCTTCAGAAGAGTCTCCACCTTTGAGGAATGGACCCTCAACATTGACGCTTGATCAATCCAACAGTCAGCTTCTTCAAACCAACTTTGTTTCTAACAGGGCTATCAGGAAGGCAATCAGACGGCGAGAGCGCTTAGCAGCAGAGAAAGTATGCAACATCTGTCAACAAAACATGATTCCTGGTAAAGATGTAGCAGCATTTCTGAATTTGAAAACTGGAAGAGTAGTTTGCTGCAGTCGGAATCCAACTGGGGTAAAATCATTTCATTAATGCTCTGATCTTGTTTTGCTATATATATTTGTTAGTTATAAAGCAAGCATGTGTAAAAACTTATGATATTGAAAGTTGAAACTGCATTTTATTCACAATACAATGCACGTGTTCAAAACTTCGGAAAAGAGTTACATTCATTTTTCATTGAGTCATGCCAGGGCACAAGTTAAGGAAGTAAAAATCGAATTAAGAAAAGAAAATTGTATTGAAAAGATAGATATTTAAACTTGAAAAACATTGAATACGCAATTTCCAAGAAAATAACTGTCTGTAGTTCCTTGACTTGTGCCATTAAGTTAGCATTTCCCTTTTTAATTTATCCAAACAGAAAAGTTATATTTGCATTTATATGCAGGCTTTTCATGTGTTTCATTTGGCCTGTGTCATACACTGGATACTCTTGTGCGAATATGAAATGATCACAGATCGTTTAGTTAATCAAAATGCTCGTCAAAAAGGGAAGAAAAAGATTGTAACAGGTTCTGGTAAAGAAGACAGGGATATAAAACATGTTTTCTGTCCAGAGTGTCAAGGTGCTGGTCTGATCATTGCAGATGGGTTGGAGCAACCAAAATTGTGCTCTCTGTCCCAGGTTTGTTCATTACATGGATAATCCTTTCCTAATCCTTCATATTATGGCCCCATTTGTTTCAGCATTTTCTAAAAAAAATCTATTTTTTTCTTAAAAAAATCACTTGTCATTTTTAAGTGTTTGTTTAGGATTTTTAGAAAAATCATTTTATTAAAAAAAATCTATATTGACTCTAAAATGAAAAACTATTAGGATTAGCTTTTTTCAATTTTTTTTTTTTTCCAAATACAAGGAGGTACCACATGAACTAGTTATAAATCATTTTTAAAGAAATCATTTTTTTGGTAGTAAACAAACAAAAATAGCTTCAGTTTTTTTTTTTTCAAATCTCTAAAAAAATCTCTAGATTTTTCTAACACAAAATCTATTTTTTTTTTAAAGCTATAACAAAAGCACCCTATATTGTCTTTGGATTCCTCTGAGCATTGATATCTTAATTTTAGGTGAATATTGTCTTGTGTTAAAAAAATAGTTCATTTGGAATTAATAATAATCTTGTGCAGATGTTCCGACTGAAATTAAAGATCATTCTACAACGCAAAGAATGGATCAAGAGTTCTGAAGATTTGCAGAATTGCTCAATTGGGTTTCATTTCCCTTCGGAATCTGAAGAGATAGCTGAGGTCTTTTATACTTCTTCATTGATTTTCATCTAAACATAGATAATGGTGAGTGTTTGATCTTCTAACATATATTGTAATGGCTTTGCTTACAGGAAAATGTGGAGCCAATAAAAATGTTGCAGTTCTATCGTGCTGATGACGAGCATGTGGTTAGTAAGAATTGTGCGAATGTTGCATAG

Protein sequence

>MS.gene055818.t1

MGGKLELGSCSNVGASNNLREKGARIILRHIRAQGHPYIELRENGKKFIYFCVLCLARCYSDSVVYDHLKGKLHRSRLDYARRTLMKPNPWPFSDGLIFFDNSSEGDKEPETVNGNRNRLLKLIESGNDSCRAIVAFNEEAQSDAQPIARDDTQADGSMLVIPCLKIASEAIDVKVRKIGLGKISARFAEKDGSLGNEIRRIWCEWLGKENSQQDDAEVQEHDFAVVVFPYSYDLGRDKVLEVEDAKSLLPSSSMLELEDERESGRKRKEPSSDVEDVDEIRRQYASEESPPLRNGPSTLTLDQSNSQLLQTNFVSNRAIRKAIRRRERLAAEKVCNICQQNMIPGKDVAAFLNLKTGRVVCCSRNPTGAFHVFHLACVIHWILLCEYEMITDRLVNQNARQKGKKKIVTGSGKEDRDIKHVFCPECQGAGLIIADGLEQPKLCSLSQMFRLKLKIILQRKEWIKSSEDLQNCSIGFHFPSESEEIAEENVEPIKMLQFYRADDEHVVSKNCANVA