Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064851.t1 | XP_013462297.1 | 96.7 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 2.10E-209 | 738 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064851.t1 | Q8LAH7 | 68.6 | 366 | 110 | 1 | 15 | 375 | 5 | 370 | 6.6e-151 | 535.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064851.t1 | A0A072V3D1 | 96.7 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 1.5e-209 | 738.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050809 | MS.gene064851 | 0.810988 | 8.77E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064851.t1 | MTR_3g115600 | 96.703 | 364 | 11 | 1 | 15 | 377 | 3 | 366 | 0.0 | 736 |
| MS.gene064851.t1 | MTR_5g006800 | 70.219 | 366 | 104 | 1 | 14 | 374 | 4 | 369 | 0.0 | 554 |
| MS.gene064851.t1 | MTR_5g006710 | 70.704 | 355 | 103 | 1 | 20 | 374 | 10 | 363 | 0.0 | 544 |
| MS.gene064851.t1 | MTR_5g006780 | 69.337 | 362 | 104 | 2 | 20 | 374 | 10 | 371 | 0.0 | 533 |
| MS.gene064851.t1 | MTR_5g006670 | 69.296 | 355 | 108 | 1 | 20 | 374 | 6 | 359 | 0.0 | 530 |
| MS.gene064851.t1 | MTR_5g008040 | 67.409 | 359 | 112 | 1 | 20 | 373 | 12 | 370 | 0.0 | 530 |
| MS.gene064851.t1 | MTR_5g006750 | 67.403 | 362 | 111 | 2 | 20 | 374 | 10 | 371 | 0.0 | 524 |
| MS.gene064851.t1 | MTR_5g006740 | 66.111 | 360 | 117 | 2 | 20 | 374 | 6 | 365 | 0.0 | 513 |
| MS.gene064851.t1 | MTR_5g006740 | 63.056 | 360 | 111 | 4 | 20 | 374 | 6 | 348 | 1.84e-168 | 474 |
| MS.gene064851.t1 | MTR_5g006720 | 59.838 | 371 | 106 | 3 | 20 | 374 | 9 | 352 | 1.07e-159 | 452 |
| MS.gene064851.t1 | MTR_4g125470 | 53.243 | 370 | 155 | 5 | 22 | 373 | 19 | 388 | 4.97e-137 | 397 |
| MS.gene064851.t1 | MTR_5g006730 | 80.189 | 106 | 21 | 0 | 20 | 125 | 10 | 115 | 4.88e-58 | 185 |
| MS.gene064851.t1 | MTR_3g096570 | 77.419 | 62 | 14 | 0 | 180 | 241 | 8 | 69 | 2.34e-26 | 106 |
| MS.gene064851.t1 | MTR_3g096562 | 66.667 | 72 | 24 | 0 | 170 | 241 | 162 | 233 | 5.09e-25 | 105 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064851.t1 | AT1G76680 | 68.579 | 366 | 110 | 1 | 15 | 375 | 5 | 370 | 0.0 | 535 |
| MS.gene064851.t1 | AT1G76690 | 67.486 | 366 | 114 | 1 | 15 | 375 | 7 | 372 | 0.0 | 534 |
| MS.gene064851.t1 | AT1G76680 | 64.194 | 391 | 110 | 2 | 15 | 375 | 5 | 395 | 0.0 | 521 |
| MS.gene064851.t1 | AT1G09400 | 65.846 | 325 | 110 | 1 | 28 | 352 | 1 | 324 | 1.51e-163 | 461 |
| MS.gene064851.t1 | AT2G06050 | 52.406 | 374 | 156 | 4 | 22 | 373 | 12 | 385 | 8.80e-137 | 395 |
| MS.gene064851.t1 | AT2G06050 | 52.406 | 374 | 156 | 4 | 22 | 373 | 12 | 385 | 8.80e-137 | 395 |
| MS.gene064851.t1 | AT2G06050 | 52.406 | 374 | 156 | 4 | 22 | 373 | 12 | 385 | 8.80e-137 | 395 |
| MS.gene064851.t1 | AT1G09400 | 66.792 | 265 | 87 | 1 | 88 | 352 | 2 | 265 | 3.18e-133 | 382 |
| MS.gene064851.t1 | AT1G17990 | 65.251 | 259 | 88 | 2 | 14 | 271 | 1 | 258 | 2.22e-128 | 370 |
| MS.gene064851.t1 | AT1G18020 | 65.251 | 259 | 88 | 2 | 14 | 271 | 1 | 258 | 2.22e-128 | 370 |
| MS.gene064851.t1 | AT1G17990 | 62.548 | 259 | 87 | 3 | 14 | 271 | 1 | 250 | 8.41e-120 | 347 |
Find 102 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCAAATACCAGGTGTATT+TGG | 0.127154 | 3.3:+94422173 | None:intergenic |
| CTGAAGTCATTGACAACTTT+TGG | 0.134544 | 3.3:+94421238 | None:intergenic |
| AAGGACCTTGTTCTTGTTAA+AGG | 0.178211 | 3.3:+94422781 | None:intergenic |
| TGTCGTTCACTTTGTCCTTT+AGG | 0.228951 | 3.3:+94420805 | None:intergenic |
| ACCCAAATACACCTGGTATT+TGG | 0.251049 | 3.3:-94422175 | MS.gene064851:CDS |
| GATCTTTCTCATGGGCATTA+AGG | 0.258096 | 3.3:+94420521 | None:intergenic |
| CTAATAATTACCTGCTTCTA+TGG | 0.268887 | 3.3:+94421198 | None:intergenic |
| TAGAATGACCAAAGCGATTA+TGG | 0.270247 | 3.3:-94423022 | None:intergenic |
| CCATCCAACTCAAATCTTCT+AGG | 0.299535 | 3.3:+94420378 | None:intergenic |
| TTCTTGATTGGGGAAGCCTC+AGG | 0.303380 | 3.3:-94422697 | MS.gene064851:CDS |
| TCCAATCTCAAGCACAAATA+AGG | 0.308704 | 3.3:-94421326 | MS.gene064851:CDS |
| GGTGCGGATTTGGTAGCTTA+TGG | 0.322401 | 3.3:-94420429 | MS.gene064851:CDS |
| TACCAAATCCGCACCATTGC+TGG | 0.328132 | 3.3:+94420437 | None:intergenic |
| CAAAGGGTGGCTTCTTGATT+GGG | 0.332102 | 3.3:-94422708 | MS.gene064851:CDS |
| ACAAAGGGTGGCTTCTTGAT+TGG | 0.332916 | 3.3:-94422709 | MS.gene064851:CDS |
| CTCTTCTTCCATAATCGCTT+TGG | 0.345327 | 3.3:+94423014 | None:intergenic |
| AATGGAACATTTATTGTTGC+TGG | 0.345581 | 3.3:-94420495 | MS.gene064851:CDS |
| TCCAAATACCAGGTGTATTT+GGG | 0.345635 | 3.3:+94422174 | None:intergenic |
| TCTTATCAGCCTTGTTCAAT+TGG | 0.354556 | 3.3:+94420355 | None:intergenic |
| GCTAAGTCATTAAGTGAATT+AGG | 0.356165 | 3.3:-94420612 | MS.gene064851:CDS |
| GCCTTATTTGTGCTTGAGAT+TGG | 0.359941 | 3.3:+94421325 | None:intergenic |
| GGCCAGCAATGGTGCGGATT+TGG | 0.384528 | 3.3:-94420439 | MS.gene064851:CDS |
| TACACCAATGATCCTGTTGT+TGG | 0.393076 | 3.3:-94420324 | MS.gene064851:CDS |
| GAGATTGGAGGCTGTCCATC+TGG | 0.397247 | 3.3:+94421340 | None:intergenic |
| TCAAATCTTCTAGGAAGATC+TGG | 0.403955 | 3.3:+94420387 | None:intergenic |
| GACTCTAACCCTCATGCTTT+AGG | 0.410599 | 3.3:-94420645 | MS.gene064851:CDS |
| TTGTTGCTGGTGGATACAAT+AGG | 0.419806 | 3.3:-94420482 | MS.gene064851:CDS |
| CATGGGCATTAAGGACTCAT+TGG | 0.438978 | 3.3:+94420530 | None:intergenic |
| GTGGAGATACATGGAGCTAA+TGG | 0.442093 | 3.3:-94420846 | MS.gene064851:CDS |
| AAAGCAGTTGTTGATGAGAT+TGG | 0.442364 | 3.3:-94420723 | MS.gene064851:CDS |
| TCTTGATTGGGGAAGCCTCA+GGG | 0.444023 | 3.3:-94422696 | MS.gene064851:CDS |
| GAGAATAAGAAAGTGGTTGA+AGG | 0.446077 | 3.3:-94422994 | MS.gene064851:CDS |
| CCATGTTGTATGGGGTGAGA+AGG | 0.460955 | 3.3:+94422956 | None:intergenic |
| ATATCCAACAACAGGATCAT+TGG | 0.464074 | 3.3:+94420320 | None:intergenic |
| TTATTTGTGCTTGAGATTGG+AGG | 0.468685 | 3.3:+94421328 | None:intergenic |
| GCTGGAAGAGTGTCCAACTA+TGG | 0.469322 | 3.3:-94422068 | MS.gene064851:intron |
| GTTGGAGCTGTTCATGAGAA+AGG | 0.473716 | 3.3:-94422119 | MS.gene064851:CDS |
| TCATGAACAGCTCCAACAAT+GGG | 0.476202 | 3.3:+94422125 | None:intergenic |
| TCAAACATGGTGCACATCCC+AGG | 0.477008 | 3.3:+94420564 | None:intergenic |
| CTTGCTTGATCAATTCCTAA+AGG | 0.484914 | 3.3:-94420820 | MS.gene064851:CDS |
| TATTCTCAACGAACAACAAA+GGG | 0.489010 | 3.3:-94422724 | MS.gene064851:CDS |
| TATTGTCATGTCATTGAACC+TGG | 0.489334 | 3.3:-94420582 | MS.gene064851:CDS |
| CTCATGAACAGCTCCAACAA+TGG | 0.489730 | 3.3:+94422124 | None:intergenic |
| TCCATTGAAGATCTTTCTCA+TGG | 0.490323 | 3.3:+94420512 | None:intergenic |
| CCCATGAGAAAGATCTTCAA+TGG | 0.491062 | 3.3:-94420513 | MS.gene064851:CDS |
| GTTGTGAGACGTCGAGGAGG+TGG | 0.497052 | 3.3:+94421271 | None:intergenic |
| CATGTTGTATGGGGTGAGAA+GGG | 0.498945 | 3.3:+94422957 | None:intergenic |
| TAATCAGTATATCCAACAAC+AGG | 0.503211 | 3.3:+94420312 | None:intergenic |
| CCTAGAAGATTTGAGTTGGA+TGG | 0.507273 | 3.3:-94420378 | MS.gene064851:CDS |
| CTAAAACCAGATACCATAGT+TGG | 0.509794 | 3.3:+94422055 | None:intergenic |
| GGAAGAAGAGAATAAGAAAG+TGG | 0.510295 | 3.3:-94423001 | MS.gene064851:CDS |
| GAAGCATGGAAACCCATTGT+TGG | 0.513600 | 3.3:-94422137 | MS.gene064851:CDS |
| TGGTATTTGGACAAGAGAAC+AGG | 0.514806 | 3.3:-94422162 | MS.gene064851:CDS |
| TCTTCCTAGAAGATTTGAGT+TGG | 0.518058 | 3.3:-94420382 | MS.gene064851:CDS |
| TTTGATGGAGTGGAGATACA+TGG | 0.518838 | 3.3:-94420855 | MS.gene064851:CDS |
| CATTCACAATAATCAGCATA+AGG | 0.519406 | 3.3:+94420672 | None:intergenic |
| CCTTCTCACCCCATACAACA+TGG | 0.541714 | 3.3:-94422956 | MS.gene064851:CDS |
| CTTGATTGGGGAAGCCTCAG+GGG | 0.545878 | 3.3:-94422695 | MS.gene064851:CDS |
| CGGATTTGGTAGCTTATGGA+AGG | 0.547082 | 3.3:-94420425 | MS.gene064851:CDS |
| AACGACAGAGATGATGAGTA+TGG | 0.548461 | 3.3:-94420789 | MS.gene064851:CDS |
| CCATTGAAGATCTTTCTCAT+GGG | 0.558552 | 3.3:+94420513 | None:intergenic |
| GGAACATTTATTGTTGCTGG+TGG | 0.563883 | 3.3:-94420492 | MS.gene064851:CDS |
| CAAGAGAACAGGTGGAAGCA+TGG | 0.564931 | 3.3:-94422151 | MS.gene064851:CDS |
| TGTTCTCTTGTCCAAATACC+AGG | 0.570132 | 3.3:+94422164 | None:intergenic |
| GAAAATTCAATCTGTCCCAC+AGG | 0.576865 | 3.3:-94422933 | MS.gene064851:intron |
| AAAGGGTGGCTTCTTGATTG+GGG | 0.577699 | 3.3:-94422707 | MS.gene064851:CDS |
| TCGTTGTCGCTTCCCTCTAG+AGG | 0.579003 | 3.3:-94420751 | MS.gene064851:CDS |
| TTATTCTCAACGAACAACAA+AGG | 0.581092 | 3.3:-94422725 | MS.gene064851:CDS |
| TATGCTGATTATTGTGAATG+TGG | 0.581554 | 3.3:-94420669 | MS.gene064851:CDS |
| ACTGCTTTCACAACCTCTAG+AGG | 0.583197 | 3.3:+94420738 | None:intergenic |
| AACAATGTGTTGGCCAGCAA+TGG | 0.583715 | 3.3:-94420450 | MS.gene064851:CDS |
| TGAACAGGTTACCAACCAGA+TGG | 0.587082 | 3.3:-94421355 | MS.gene064851:intron |
| AGTTGTCAATGACTTCAGAA+TGG | 0.592608 | 3.3:-94421233 | MS.gene064851:CDS |
| GGTGGATACAATAGGACTGA+AGG | 0.596483 | 3.3:-94420474 | MS.gene064851:CDS |
| GGGGTCTCAGACACTGCACA+AGG | 0.597651 | 3.3:-94422676 | MS.gene064851:CDS |
| TTGGAGGCTGTCCATCTGGT+TGG | 0.600157 | 3.3:+94421344 | None:intergenic |
| TTGTGAGACGTCGAGGAGGT+GGG | 0.604708 | 3.3:+94421272 | None:intergenic |
| TGGTTGAGCAACGAAATTGA+AGG | 0.607262 | 3.3:+94422762 | None:intergenic |
| GACTGAAGGAAACAATGTGT+TGG | 0.609986 | 3.3:-94420460 | MS.gene064851:CDS |
| ACAGAGATGATGAGTATGGT+GGG | 0.612337 | 3.3:-94420785 | MS.gene064851:CDS |
| ATGTAGATGCCTAAAGCATG+AGG | 0.612576 | 3.3:+94420636 | None:intergenic |
| TCATGCTTTAGGCATCTACA+TGG | 0.616635 | 3.3:-94420634 | MS.gene064851:CDS |
| GAGATTGGAGCTGACAAAGT+TGG | 0.616749 | 3.3:-94420708 | MS.gene064851:CDS |
| CTGCTTTCACAACCTCTAGA+GGG | 0.620027 | 3.3:+94420739 | None:intergenic |
| GACAGAGATGATGAGTATGG+TGG | 0.624080 | 3.3:-94420786 | MS.gene064851:CDS |
| TCATCGGTTGTGAGACGTCG+AGG | 0.630333 | 3.3:+94421265 | None:intergenic |
| GTTGGATGGCCAATTGAACA+AGG | 0.634338 | 3.3:-94420364 | MS.gene064851:CDS |
| ATGTTGTATGGGGTGAGAAG+GGG | 0.635447 | 3.3:+94422958 | None:intergenic |
| ATTGTCATGTCATTGAACCT+GGG | 0.637262 | 3.3:-94420581 | MS.gene064851:CDS |
| TTGCACCTTTAACAAGAACA+AGG | 0.637602 | 3.3:-94422786 | MS.gene064851:CDS |
| TCTCAACGAACAACAAAGGG+TGG | 0.642936 | 3.3:-94422721 | MS.gene064851:CDS |
| AATAAGGCACTACAAAAGCA+AGG | 0.645729 | 3.3:-94421310 | MS.gene064851:CDS |
| TGAAGGTACCCAAATACACC+TGG | 0.648170 | 3.3:-94422182 | MS.gene064851:intron |
| TGCAGTGTCTGAGACCCCTG+AGG | 0.651692 | 3.3:+94422681 | None:intergenic |
| TATTTGGACAAGAGAACAGG+TGG | 0.653872 | 3.3:-94422159 | MS.gene064851:CDS |
| CTTCTCACCCCATACAACAT+GGG | 0.659177 | 3.3:-94422955 | MS.gene064851:CDS |
| GGAGCTGTTCATGAGAAAGG+AGG | 0.677401 | 3.3:-94422116 | MS.gene064851:CDS |
| TGTAGATGCCTAAAGCATGA+GGG | 0.695124 | 3.3:+94420637 | None:intergenic |
| TGTGTTGGCCAGCAATGGTG+CGG | 0.698432 | 3.3:-94420445 | MS.gene064851:CDS |
| GAATAATAAAGAGCAGCATG+TGG | 0.702052 | 3.3:+94422742 | None:intergenic |
| TCGGTTGTGAGACGTCGAGG+AGG | 0.709608 | 3.3:+94421268 | None:intergenic |
| GGGTCTCAGACACTGCACAA+GGG | 0.738404 | 3.3:-94422675 | MS.gene064851:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAACTAAAATAAATAC+AGG | - | chr3.3:94422423-94422442 | MS.gene064851:intron | 10.0% |
| !!! | AAAGATTTTTTAAAAAGTAA+TGG | - | chr3.3:94421615-94421634 | MS.gene064851:intron | 10.0% |
| !!! | AAAGATTTTTTTAAAACTAA+TGG | + | chr3.3:94421355-94421374 | None:intergenic | 10.0% |
| !!! | AAGATTTTTTAAAAAGTAAT+GGG | - | chr3.3:94421616-94421635 | MS.gene064851:intron | 10.0% |
| !!! | AAGATTTTTTTAAAACTAAT+GGG | + | chr3.3:94421354-94421373 | None:intergenic | 10.0% |
| !!! | ATTACTTTTTAAAAAATCTT+TGG | + | chr3.3:94421616-94421635 | None:intergenic | 10.0% |
| !!! | ATTAGTTTTAAAAAAATCTT+TGG | - | chr3.3:94421354-94421373 | MS.gene064851:intron | 10.0% |
| !!! | TTACTTTTTAAAAAATCTTT+GGG | + | chr3.3:94421615-94421634 | None:intergenic | 10.0% |
| !!! | TTAGTTTTAAAAAAATCTTT+GGG | - | chr3.3:94421355-94421374 | MS.gene064851:intron | 10.0% |
| !! | TAAATAAATTATTTACCTGT+GGG | + | chr3.3:94420387-94420406 | None:intergenic | 15.0% |
| !! | TGCAATATCAATTTATTATT+TGG | - | chr3.3:94422127-94422146 | MS.gene064851:CDS | 15.0% |
| !! | TTCTTAGATAAAATAATTCT+TGG | - | chr3.3:94421840-94421859 | MS.gene064851:intron | 15.0% |
| !!! | AAATAACAACTCTATTTTTT+TGG | - | chr3.3:94420719-94420738 | MS.gene064851:CDS | 15.0% |
| !!! | AATAACAACTCTATTTTTTT+GGG | - | chr3.3:94420720-94420739 | MS.gene064851:CDS | 15.0% |
| !!! | ACAAATTTTATTGTTAACAT+TGG | + | chr3.3:94420957-94420976 | None:intergenic | 15.0% |
| !!! | ATTGTAAAAATGTTTTTTGT+AGG | + | chr3.3:94420797-94420816 | None:intergenic | 15.0% |
| !!! | GTGTTTTATTACATTAAAAT+GGG | - | chr3.3:94421717-94421736 | MS.gene064851:intron | 15.0% |
| !!! | TACAAAAAACATTTTTACAA+TGG | - | chr3.3:94420796-94420815 | MS.gene064851:CDS | 15.0% |
| !!! | TGTGTTTTATTACATTAAAA+TGG | - | chr3.3:94421716-94421735 | MS.gene064851:intron | 15.0% |
| !! | ACAATGAATAGTTACAATAT+AGG | + | chr3.3:94421021-94421040 | None:intergenic | 20.0% |
| !! | ACTAAACAATTTACTTCAAA+TGG | - | chr3.3:94421791-94421810 | MS.gene064851:intron | 20.0% |
| !! | ATAAAATTGTAATATCATGC+AGG | - | chr3.3:94422221-94422240 | MS.gene064851:intron | 20.0% |
| !! | CTAAATAAATTATTTACCTG+TGG | + | chr3.3:94420388-94420407 | None:intergenic | 20.0% |
| !! | TAAAATTGTAATATCATGCA+GGG | - | chr3.3:94422222-94422241 | MS.gene064851:intron | 20.0% |
| !! | TATTAAAAGACGAATTGTTT+AGG | - | chr3.3:94421398-94421417 | MS.gene064851:intron | 20.0% |
| !!! | AAAATAAATACAGGTTTTGA+TGG | - | chr3.3:94422432-94422451 | MS.gene064851:intron | 20.0% |
| ! | CGTTCTATCGATATATATAT+AGG | + | chr3.3:94421923-94421942 | None:intergenic | 25.0% |
| ! | TGGTTAATAAACTAAGAACT+CGG | - | chr3.3:94421811-94421830 | MS.gene064851:intron | 25.0% |
| !! | CCATCAAATAATCTAAAGTT+CGG | + | chr3.3:94421483-94421502 | None:intergenic | 25.0% |
| AAAAACTGATGACACAAACA+AGG | + | chr3.3:94421436-94421455 | None:intergenic | 30.0% | |
| AAGTTCAATTCAATGTGATG+AGG | + | chr3.3:94420423-94420442 | None:intergenic | 30.0% | |
| AATGGAACATTTATTGTTGC+TGG | - | chr3.3:94422807-94422826 | MS.gene064851:intron | 30.0% | |
| AGTTCAATTCAATGTGATGA+GGG | + | chr3.3:94420422-94420441 | None:intergenic | 30.0% | |
| ATGAGCTTGAGAACAAAAAT+AGG | + | chr3.3:94420665-94420684 | None:intergenic | 30.0% | |
| CATTCACAATAATCAGCATA+AGG | + | chr3.3:94422633-94422652 | None:intergenic | 30.0% | |
| CCGAACTTTAGATTATTTGA+TGG | - | chr3.3:94421480-94421499 | MS.gene064851:intron | 30.0% | |
| CTAATAATTACCTGCTTCTA+TGG | + | chr3.3:94422107-94422126 | None:intergenic | 30.0% | |
| CTCTAGTGTAATCTAATTAG+AGG | + | chr3.3:94422258-94422277 | None:intergenic | 30.0% | |
| GCTAAGTCATTAAGTGAATT+AGG | - | chr3.3:94422690-94422709 | MS.gene064851:CDS | 30.0% | |
| GTGTATATGTATGTAATGAC+TGG | - | chr3.3:94420820-94420839 | MS.gene064851:CDS | 30.0% | |
| GTTTATGTTATAATTTCCCC+TGG | - | chr3.3:94421288-94421307 | MS.gene064851:CDS | 30.0% | |
| TAATCAGTATATCCAACAAC+AGG | + | chr3.3:94422993-94423012 | None:intergenic | 30.0% | |
| TATTCTCAACGAACAACAAA+GGG | - | chr3.3:94420578-94420597 | MS.gene064851:CDS | 30.0% | |
| TGAGCTTGAGAACAAAAATA+GGG | + | chr3.3:94420664-94420683 | None:intergenic | 30.0% | |
| TTAGATCAAATGAGATGCAA+TGG | - | chr3.3:94420920-94420939 | MS.gene064851:intron | 30.0% | |
| TTATTCTCAACGAACAACAA+AGG | - | chr3.3:94420577-94420596 | MS.gene064851:CDS | 30.0% | |
| ! | CGAATTGTTTAGGAGAATTT+TGG | - | chr3.3:94421408-94421427 | MS.gene064851:intron | 30.0% |
| ! | TATGCTGATTATTGTGAATG+TGG | - | chr3.3:94422633-94422652 | MS.gene064851:intron | 30.0% |
| ! | TGAAGTCATTGACAACTTTT+GGG | + | chr3.3:94422066-94422085 | None:intergenic | 30.0% |
| ! | TGAATTTTCCCATGTTGTAT+GGG | + | chr3.3:94420358-94420377 | None:intergenic | 30.0% |
| ! | TTGAATTTTCCCATGTTGTA+TGG | + | chr3.3:94420359-94420378 | None:intergenic | 30.0% |
| ! | TTTGAATCCTTGGTAATTGA+AGG | - | chr3.3:94421103-94421122 | MS.gene064851:intron | 30.0% |
| !! | CTAGTAGCATTTTCAAGAAA+TGG | + | chr3.3:94423017-94423036 | None:intergenic | 30.0% |
| !! | TCTCAATGTTTTTGAATCCT+TGG | - | chr3.3:94421093-94421112 | MS.gene064851:intron | 30.0% |
| !! | TTTTGTGTGTGTGTCTTATT+AGG | - | chr3.3:94420486-94420505 | MS.gene064851:CDS | 30.0% |
| AAGGACCTTGTTCTTGTTAA+AGG | + | chr3.3:94420524-94420543 | None:intergenic | 35.0% | |
| ACATCATTGCTATGTATGCA+GGG | + | chr3.3:94422286-94422305 | None:intergenic | 35.0% | |
| AGAATTGTCTAACGCAAGTA+AGG | - | chr3.3:94421535-94421554 | MS.gene064851:intron | 35.0% | |
| AGTTGTCAATGACTTCAGAA+TGG | - | chr3.3:94422069-94422088 | MS.gene064851:CDS | 35.0% | |
| ATATCCAACAACAGGATCAT+TGG | + | chr3.3:94422985-94423004 | None:intergenic | 35.0% | |
| ATTGTCATGTCATTGAACCT+GGG | - | chr3.3:94422721-94422740 | MS.gene064851:CDS | 35.0% | |
| CCATTGAAGATCTTTCTCAT+GGG | + | chr3.3:94422792-94422811 | None:intergenic | 35.0% | |
| CTAAAACCAGATACCATAGT+TGG | + | chr3.3:94421250-94421269 | None:intergenic | 35.0% | |
| CTTGCTTGATCAATTCCTAA+AGG | - | chr3.3:94422482-94422501 | MS.gene064851:intron | 35.0% | |
| GAATAATAAAGAGCAGCATG+TGG | + | chr3.3:94420563-94420582 | None:intergenic | 35.0% | |
| GAGAACAAAAATAGGGTAGT+TGG | + | chr3.3:94420657-94420676 | None:intergenic | 35.0% | |
| GAGAATAAGAAAGTGGTTGA+AGG | - | chr3.3:94420308-94420327 | MS.gene064851:CDS | 35.0% | |
| GGAAGAAGAGAATAAGAAAG+TGG | - | chr3.3:94420301-94420320 | MS.gene064851:CDS | 35.0% | |
| TACTTGCGTTAGACAATTCT+TGG | + | chr3.3:94421535-94421554 | None:intergenic | 35.0% | |
| TATTGTCATGTCATTGAACC+TGG | - | chr3.3:94422720-94422739 | MS.gene064851:CDS | 35.0% | |
| TCCAAATACCAGGTGTATTT+GGG | + | chr3.3:94421131-94421150 | None:intergenic | 35.0% | |
| TCCAATCTCAAGCACAAATA+AGG | - | chr3.3:94421976-94421995 | MS.gene064851:intron | 35.0% | |
| TCCATTGAAGATCTTTCTCA+TGG | + | chr3.3:94422793-94422812 | None:intergenic | 35.0% | |
| TCTTCCTAGAAGATTTGAGT+TGG | - | chr3.3:94422920-94422939 | MS.gene064851:intron | 35.0% | |
| TTATTTGTGCTTGAGATTGG+AGG | + | chr3.3:94421977-94421996 | None:intergenic | 35.0% | |
| TTGCACCTTTAACAAGAACA+AGG | - | chr3.3:94420516-94420535 | MS.gene064851:CDS | 35.0% | |
| ! | AAAGCAGTTGTTGATGAGAT+TGG | - | chr3.3:94422579-94422598 | MS.gene064851:intron | 35.0% |
| ! | AATAAGGCACTACAAAAGCA+AGG | - | chr3.3:94421992-94422011 | MS.gene064851:intron | 35.0% |
| ! | CTGAAGTCATTGACAACTTT+TGG | + | chr3.3:94422067-94422086 | None:intergenic | 35.0% |
| ! | GAATTTTCCCATGTTGTATG+GGG | + | chr3.3:94420357-94420376 | None:intergenic | 35.0% |
| ! | GCATATTCTTTTGTCAGCTT+TGG | - | chr3.3:94421208-94421227 | MS.gene064851:intron | 35.0% |
| ! | TCAAATCTTCTAGGAAGATC+TGG | + | chr3.3:94422918-94422937 | None:intergenic | 35.0% |
| ! | TCGATAGAACGTTTTTGAAC+AGG | - | chr3.3:94421932-94421951 | MS.gene064851:intron | 35.0% |
| !! | AAATACAGGTTTTGATGGAG+TGG | - | chr3.3:94422437-94422456 | MS.gene064851:intron | 35.0% |
| !! | GGTGTCACATTTTTCAAACA+TGG | + | chr3.3:94422754-94422773 | None:intergenic | 35.0% |
| !! | TCTTATCAGCCTTGTTCAAT+TGG | + | chr3.3:94422950-94422969 | None:intergenic | 35.0% |
| !!! | GACAACTTTTGGGATTTCAT+CGG | + | chr3.3:94422056-94422075 | None:intergenic | 35.0% |
| AACGACAGAGATGATGAGTA+TGG | - | chr3.3:94422513-94422532 | MS.gene064851:intron | 40.0% | |
| ACAGAGATGATGAGTATGGT+GGG | - | chr3.3:94422517-94422536 | MS.gene064851:intron | 40.0% | |
| ACCCAAATACACCTGGTATT+TGG | - | chr3.3:94421127-94421146 | MS.gene064851:intron | 40.0% | |
| ATGTAGATGCCTAAAGCATG+AGG | + | chr3.3:94422669-94422688 | None:intergenic | 40.0% | |
| ATTCAATGTGATGAGGGTCT+AGG | + | chr3.3:94420416-94420435 | None:intergenic | 40.0% | |
| CACATCATTGCTATGTATGC+AGG | + | chr3.3:94422287-94422306 | None:intergenic | 40.0% | |
| CCATCCAACTCAAATCTTCT+AGG | + | chr3.3:94422927-94422946 | None:intergenic | 40.0% | |
| CCCATGAGAAAGATCTTCAA+TGG | - | chr3.3:94422789-94422808 | MS.gene064851:CDS | 40.0% | |
| CTCTTCTTCCATAATCGCTT+TGG | + | chr3.3:94420291-94420310 | None:intergenic | 40.0% | |
| GAAAATTCAATCTGTCCCAC+AGG | - | chr3.3:94420369-94420388 | MS.gene064851:CDS | 40.0% | |
| GACTGAAGGAAACAATGTGT+TGG | - | chr3.3:94422842-94422861 | MS.gene064851:intron | 40.0% | |
| GATCTTTCTCATGGGCATTA+AGG | + | chr3.3:94422784-94422803 | None:intergenic | 40.0% | |
| GGAACATTTATTGTTGCTGG+TGG | - | chr3.3:94422810-94422829 | MS.gene064851:intron | 40.0% | |
| GTCAGATTTCGCTTATCATG+TGG | - | chr3.3:94421457-94421476 | MS.gene064851:intron | 40.0% | |
| GTCCAAATACCAGGTGTATT+TGG | + | chr3.3:94421132-94421151 | None:intergenic | 40.0% | |
| TACACCAATGATCCTGTTGT+TGG | - | chr3.3:94422978-94422997 | MS.gene064851:CDS | 40.0% | |
| TATTTGGACAAGAGAACAGG+TGG | - | chr3.3:94421143-94421162 | MS.gene064851:intron | 40.0% | |
| TCATGAACAGCTCCAACAAT+GGG | + | chr3.3:94421180-94421199 | None:intergenic | 40.0% | |
| TGGTATTTGGACAAGAGAAC+AGG | - | chr3.3:94421140-94421159 | MS.gene064851:intron | 40.0% | |
| TGGTTGAGCAACGAAATTGA+AGG | + | chr3.3:94420543-94420562 | None:intergenic | 40.0% | |
| TGTAGATGCCTAAAGCATGA+GGG | + | chr3.3:94422668-94422687 | None:intergenic | 40.0% | |
| TGTCGTTCACTTTGTCCTTT+AGG | + | chr3.3:94422500-94422519 | None:intergenic | 40.0% | |
| TGTTCTCTTGTCCAAATACC+AGG | + | chr3.3:94421141-94421160 | None:intergenic | 40.0% | |
| TTGGGTACCTTCAATTACCA+AGG | + | chr3.3:94421113-94421132 | None:intergenic | 40.0% | |
| TTTGATGGAGTGGAGATACA+TGG | - | chr3.3:94422447-94422466 | MS.gene064851:intron | 40.0% | |
| ! | ACCTGCTTCTATGGCATTTT+TGG | + | chr3.3:94422098-94422117 | None:intergenic | 40.0% |
| ! | AGCTTATGGAAGGCTCTTTT+TGG | - | chr3.3:94422887-94422906 | MS.gene064851:intron | 40.0% |
| ! | CCCCTGGATTAGAAACAATA+CGG | - | chr3.3:94421304-94421323 | MS.gene064851:CDS | 40.0% |
| ! | CCCTGGATTAGAAACAATAC+GGG | - | chr3.3:94421305-94421324 | MS.gene064851:CDS | 40.0% |
| ! | TCATGCTTTAGGCATCTACA+TGG | - | chr3.3:94422668-94422687 | MS.gene064851:intron | 40.0% |
| ! | TTGTTGCTGGTGGATACAAT+AGG | - | chr3.3:94422820-94422839 | MS.gene064851:intron | 40.0% |
| !! | CCCGTATTGTTTCTAATCCA+GGG | + | chr3.3:94421308-94421327 | None:intergenic | 40.0% |
| !! | CCGTATTGTTTCTAATCCAG+GGG | + | chr3.3:94421307-94421326 | None:intergenic | 40.0% |
| !! | CCTAGAAGATTTGAGTTGGA+TGG | - | chr3.3:94422924-94422943 | MS.gene064851:intron | 40.0% |
| !! | GCCTTATTTGTGCTTGAGAT+TGG | + | chr3.3:94421980-94421999 | None:intergenic | 40.0% |
| AAAGGGTGGCTTCTTGATTG+GGG | - | chr3.3:94420595-94420614 | MS.gene064851:CDS | 45.0% | |
| ACAAAGGGTGGCTTCTTGAT+TGG | - | chr3.3:94420593-94420612 | MS.gene064851:CDS | 45.0% | |
| ACTGCTTTCACAACCTCTAG+AGG | + | chr3.3:94422567-94422586 | None:intergenic | 45.0% | |
| ATGTTGTATGGGGTGAGAAG+GGG | + | chr3.3:94420347-94420366 | None:intergenic | 45.0% | |
| CAAAGGGTGGCTTCTTGATT+GGG | - | chr3.3:94420594-94420613 | MS.gene064851:CDS | 45.0% | |
| CATGGGCATTAAGGACTCAT+TGG | + | chr3.3:94422775-94422794 | None:intergenic | 45.0% | |
| CATGTTGTATGGGGTGAGAA+GGG | + | chr3.3:94420348-94420367 | None:intergenic | 45.0% | |
| CTCATGAACAGCTCCAACAA+TGG | + | chr3.3:94421181-94421200 | None:intergenic | 45.0% | |
| CTGCTTTCACAACCTCTAGA+GGG | + | chr3.3:94422566-94422585 | None:intergenic | 45.0% | |
| CTTCTCACCCCATACAACAT+GGG | - | chr3.3:94420347-94420366 | MS.gene064851:CDS | 45.0% | |
| GAAGCATGGAAACCCATTGT+TGG | - | chr3.3:94421165-94421184 | MS.gene064851:intron | 45.0% | |
| GACAGAGATGATGAGTATGG+TGG | - | chr3.3:94422516-94422535 | MS.gene064851:intron | 45.0% | |
| GACTCTAACCCTCATGCTTT+AGG | - | chr3.3:94422657-94422676 | MS.gene064851:intron | 45.0% | |
| GAGATTGGAGCTGACAAAGT+TGG | - | chr3.3:94422594-94422613 | MS.gene064851:intron | 45.0% | |
| GAGTGTCCAACTATGGTATC+TGG | - | chr3.3:94421241-94421260 | MS.gene064851:CDS | 45.0% | |
| GCCAAAAATGCCATAGAAGC+AGG | - | chr3.3:94422094-94422113 | MS.gene064851:CDS | 45.0% | |
| GGTGGATACAATAGGACTGA+AGG | - | chr3.3:94422828-94422847 | MS.gene064851:intron | 45.0% | |
| GTGGAGATACATGGAGCTAA+TGG | - | chr3.3:94422456-94422475 | MS.gene064851:intron | 45.0% | |
| GTTGGAGCTGTTCATGAGAA+AGG | - | chr3.3:94421183-94421202 | MS.gene064851:intron | 45.0% | |
| GTTGGATGGCCAATTGAACA+AGG | - | chr3.3:94422938-94422957 | MS.gene064851:CDS | 45.0% | |
| TCTCAACGAACAACAAAGGG+TGG | - | chr3.3:94420581-94420600 | MS.gene064851:CDS | 45.0% | |
| TGAACAGGTTACCAACCAGA+TGG | - | chr3.3:94421947-94421966 | MS.gene064851:intron | 45.0% | |
| ! | AACAATGTGTTGGCCAGCAA+TGG | - | chr3.3:94422852-94422871 | MS.gene064851:intron | 45.0% |
| ! | CGGATTTGGTAGCTTATGGA+AGG | - | chr3.3:94422877-94422896 | MS.gene064851:intron | 45.0% |
| !! | GCCCGTATTGTTTCTAATCC+AGG | + | chr3.3:94421309-94421328 | None:intergenic | 45.0% |
| !! | TGAAGGTACCCAAATACACC+TGG | - | chr3.3:94421120-94421139 | MS.gene064851:intron | 45.0% |
| CAAGAGAACAGGTGGAAGCA+TGG | - | chr3.3:94421151-94421170 | MS.gene064851:intron | 50.0% | |
| CCATGTTGTATGGGGTGAGA+AGG | + | chr3.3:94420349-94420368 | None:intergenic | 50.0% | |
| CCTTCTCACCCCATACAACA+TGG | - | chr3.3:94420346-94420365 | MS.gene064851:CDS | 50.0% | |
| GGAGCTGTTCATGAGAAAGG+AGG | - | chr3.3:94421186-94421205 | MS.gene064851:intron | 50.0% | |
| TACCAAATCCGCACCATTGC+TGG | + | chr3.3:94422868-94422887 | None:intergenic | 50.0% | |
| TCAAACATGGTGCACATCCC+AGG | + | chr3.3:94422741-94422760 | None:intergenic | 50.0% | |
| TCTTGATTGGGGAAGCCTCA+GGG | - | chr3.3:94420606-94420625 | MS.gene064851:CDS | 50.0% | |
| TTCTTGATTGGGGAAGCCTC+AGG | - | chr3.3:94420605-94420624 | MS.gene064851:CDS | 50.0% | |
| ! | GGTGCGGATTTGGTAGCTTA+TGG | - | chr3.3:94422873-94422892 | MS.gene064851:intron | 50.0% |
| !! | GCTGGAAGAGTGTCCAACTA+TGG | - | chr3.3:94421234-94421253 | MS.gene064851:CDS | 50.0% |
| !! | TTTTGTCAGCTTTGGCACGC+TGG | - | chr3.3:94421216-94421235 | MS.gene064851:CDS | 50.0% |
| CTTGATTGGGGAAGCCTCAG+GGG | - | chr3.3:94420607-94420626 | MS.gene064851:CDS | 55.0% | |
| GAGATTGGAGGCTGTCCATC+TGG | + | chr3.3:94421965-94421984 | None:intergenic | 55.0% | |
| GGGTCTCAGACACTGCACAA+GGG | - | chr3.3:94420627-94420646 | MS.gene064851:CDS | 55.0% | |
| TTGGAGGCTGTCCATCTGGT+TGG | + | chr3.3:94421961-94421980 | None:intergenic | 55.0% | |
| TTGTGAGACGTCGAGGAGGT+GGG | + | chr3.3:94422033-94422052 | None:intergenic | 55.0% | |
| ! | TCATCGGTTGTGAGACGTCG+AGG | + | chr3.3:94422040-94422059 | None:intergenic | 55.0% |
| ! | TCGTTGTCGCTTCCCTCTAG+AGG | - | chr3.3:94422551-94422570 | MS.gene064851:intron | 55.0% |
| ! | TGTGTTGGCCAGCAATGGTG+CGG | - | chr3.3:94422857-94422876 | MS.gene064851:intron | 55.0% |
| GGCCAGCAATGGTGCGGATT+TGG | - | chr3.3:94422863-94422882 | MS.gene064851:intron | 60.0% | |
| GGGGTCTCAGACACTGCACA+AGG | - | chr3.3:94420626-94420645 | MS.gene064851:CDS | 60.0% | |
| GTTGTGAGACGTCGAGGAGG+TGG | + | chr3.3:94422034-94422053 | None:intergenic | 60.0% | |
| TCGGTTGTGAGACGTCGAGG+AGG | + | chr3.3:94422037-94422056 | None:intergenic | 60.0% | |
| ! | TGCAGTGTCTGAGACCCCTG+AGG | + | chr3.3:94420624-94420643 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 94420284 | 94423040 | 94420284 | ID=MS.gene064851 |
| chr3.3 | mRNA | 94420284 | 94423040 | 94420284 | ID=MS.gene064851.t1;Parent=MS.gene064851 |
| chr3.3 | exon | 94422934 | 94423040 | 94422934 | ID=MS.gene064851.t1.exon1;Parent=MS.gene064851.t1 |
| chr3.3 | CDS | 94422934 | 94423040 | 94422934 | ID=cds.MS.gene064851.t1;Parent=MS.gene064851.t1 |
| chr3.3 | exon | 94422676 | 94422816 | 94422676 | ID=MS.gene064851.t1.exon2;Parent=MS.gene064851.t1 |
| chr3.3 | CDS | 94422676 | 94422816 | 94422676 | ID=cds.MS.gene064851.t1;Parent=MS.gene064851.t1 |
| chr3.3 | exon | 94422069 | 94422199 | 94422069 | ID=MS.gene064851.t1.exon3;Parent=MS.gene064851.t1 |
| chr3.3 | CDS | 94422069 | 94422199 | 94422069 | ID=cds.MS.gene064851.t1;Parent=MS.gene064851.t1 |
| chr3.3 | exon | 94421209 | 94421370 | 94421209 | ID=MS.gene064851.t1.exon4;Parent=MS.gene064851.t1 |
| chr3.3 | CDS | 94421209 | 94421370 | 94421209 | ID=cds.MS.gene064851.t1;Parent=MS.gene064851.t1 |
| chr3.3 | exon | 94420284 | 94420879 | 94420284 | ID=MS.gene064851.t1.exon5;Parent=MS.gene064851.t1 |
| chr3.3 | CDS | 94420284 | 94420879 | 94420284 | ID=cds.MS.gene064851.t1;Parent=MS.gene064851.t1 |
| Gene Sequence |
| Protein sequence |
