AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050809


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050809.t1 MTR_7g111240 96.714 213 7 0 1 213 2 214 4.81e-149 413
MS.gene050809.t1 MTR_7g111240 95.305 213 7 1 1 213 2 211 5.77e-145 402
MS.gene050809.t1 MTR_1g085140 77.889 199 44 0 15 213 20 218 4.50e-112 320
MS.gene050809.t1 MTR_1g085500 65.217 207 72 0 7 213 11 217 3.72e-94 274
MS.gene050809.t1 MTR_6g005360 48.585 212 103 3 3 210 6 215 2.72e-56 178
MS.gene050809.t1 MTR_6g005310 48.585 212 103 3 3 210 6 215 4.63e-56 177
MS.gene050809.t1 MTR_4g017040 46.729 214 107 3 1 209 4 215 5.93e-56 177
MS.gene050809.t1 MTR_6g005330 49.275 207 99 3 8 210 11 215 7.89e-56 177
MS.gene050809.t1 MTR_1g079490 46.948 213 107 3 3 210 6 217 9.24e-56 177
MS.gene050809.t1 MTR_6g005340 48.113 212 104 3 3 210 6 215 3.17e-55 175
MS.gene050809.t1 MTR_4g017050 46.262 214 108 3 1 209 4 215 3.64e-55 175
MS.gene050809.t1 MTR_5g046410 46.262 214 108 3 1 209 4 215 3.76e-55 175
MS.gene050809.t1 MTR_5g046430 46.262 214 108 3 1 209 4 215 3.76e-55 175
MS.gene050809.t1 MTR_4g017030 46.262 214 108 3 1 209 4 215 3.76e-55 175
MS.gene050809.t1 MTR_2g019250 46.262 214 108 3 1 209 4 215 6.27e-55 174
MS.gene050809.t1 MTR_5g036570 46.154 195 104 1 18 211 26 220 8.88e-55 174
MS.gene050809.t1 MTR_1g112200 44.286 210 104 5 8 212 8 209 5.03e-53 169
MS.gene050809.t1 MTR_6g005380 50.829 181 82 3 23 198 26 204 7.83e-50 161
MS.gene050809.t1 MTR_1g023770 41.981 212 115 2 1 210 4 209 1.02e-48 158
MS.gene050809.t1 MTR_6g005350 44.444 207 108 4 8 210 11 214 4.14e-47 154
MS.gene050809.t1 MTR_2g030855 43.590 195 105 2 18 210 21 212 4.85e-46 152
MS.gene050809.t1 MTR_1g060120 38.532 218 124 4 3 213 10 224 8.04e-44 146
MS.gene050809.t1 MTR_2g031270 42.632 190 104 2 23 210 27 213 1.37e-43 145
MS.gene050809.t1 MTR_2g030895 43.023 172 95 2 42 210 7 178 5.01e-40 135
MS.gene050809.t1 MTR_2g030865 43.023 172 95 2 42 210 7 178 2.99e-39 133
MS.gene050809.t1 MTR_8g020630 37.559 213 128 4 1 213 1 208 4.22e-39 134
MS.gene050809.t1 MTR_8g007300 44.970 169 90 2 18 184 25 192 8.05e-39 133
MS.gene050809.t1 MTR_8g020650 38.542 192 114 3 22 213 21 208 2.48e-38 132
MS.gene050809.t1 MTR_8g020590 37.931 203 124 1 8 210 4 204 3.05e-38 131
MS.gene050809.t1 MTR_8g020670 37.089 213 129 4 1 213 1 208 4.15e-38 131
MS.gene050809.t1 MTR_3g096330 40.513 195 97 4 18 210 576 753 2.91e-37 137
MS.gene050809.t1 MTR_2g045100 37.441 211 127 4 1 211 1 206 3.32e-37 129
MS.gene050809.t1 MTR_2g041570 40.642 187 109 1 25 211 23 207 3.49e-37 129
MS.gene050809.t1 MTR_2g044040 36.967 211 128 4 1 211 1 206 8.57e-37 128
MS.gene050809.t1 MTR_2g041580 39.683 189 112 1 25 213 23 209 1.40e-36 127
MS.gene050809.t1 MTR_2g041550 40.860 186 108 1 25 210 23 206 4.67e-36 126
MS.gene050809.t1 MTR_0284s0010 36.493 211 129 4 1 211 1 206 9.24e-36 125
MS.gene050809.t1 MTR_3g019710 35.545 211 131 4 1 211 1 206 3.02e-35 124
MS.gene050809.t1 MTR_2g036120 36.019 211 130 4 1 211 1 206 3.22e-35 124
MS.gene050809.t1 MTR_3g019650 34.597 211 132 4 1 211 1 205 4.00e-34 121
MS.gene050809.t1 MTR_4g010340 39.706 204 115 5 7 210 6 201 7.35e-34 120
MS.gene050809.t1 MTR_7g011340 37.566 189 114 3 23 211 22 206 9.09e-34 120
MS.gene050809.t1 MTR_5g031460 33.175 211 136 4 1 211 1 206 1.27e-33 120
MS.gene050809.t1 MTR_3g019680 35.545 211 130 5 1 211 1 205 6.05e-33 118
MS.gene050809.t1 MTR_8g020770 39.011 182 106 4 1 181 1 178 7.01e-32 115
MS.gene050809.t1 MTR_2g086620 45.522 134 70 2 75 207 70 201 8.56e-32 115
MS.gene050809.t1 MTR_2g086630 45.522 134 70 2 75 207 70 201 1.02e-31 115
MS.gene050809.t1 MTR_2g086640 37.374 198 108 5 11 207 18 200 3.54e-31 113
MS.gene050809.t1 MTR_8g020750 40.588 170 99 2 1 169 1 169 5.71e-31 113
MS.gene050809.t1 MTR_8g020610 36.364 176 109 2 7 182 5 177 5.85e-31 113
MS.gene050809.t1 MTR_4g052770 41.791 134 75 2 75 207 71 202 2.23e-30 111
MS.gene050809.t1 MTR_4g052780 41.791 134 75 2 75 207 71 202 2.59e-30 111
MS.gene050809.t1 MTR_2g031300 40.252 159 73 2 42 198 7 145 1.90e-29 107
MS.gene050809.t1 MTR_8g020760 38.650 163 98 2 7 169 8 168 1.23e-25 99.4
MS.gene050809.t1 MTR_4g027415 43.902 123 67 2 23 145 22 142 2.95e-25 96.3
MS.gene050809.t1 MTR_8g020763 41.667 132 74 3 38 168 17 146 3.37e-24 95.1
MS.gene050809.t1 MTR_3g073170 34.043 188 116 5 24 210 26 206 4.90e-24 95.1
MS.gene050809.t1 MTR_2g019780 31.383 188 121 5 24 210 28 208 1.18e-21 89.0
MS.gene050809.t1 MTR_3g019810 33.014 209 125 7 1 207 107 302 1.43e-21 90.5
MS.gene050809.t1 MTR_2g072560 44.144 111 61 1 7 117 6 115 4.82e-21 85.5
MS.gene050809.t1 MTR_3g019610 42.991 107 59 2 1 107 1 105 5.10e-20 82.0
MS.gene050809.t1 MTR_2g030915 47.059 68 24 2 90 157 1 56 1.73e-13 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050809.t1 AT1G09560 71.357 199 57 0 15 213 20 218 6.28e-98 284
MS.gene050809.t1 AT3G62020 67.150 207 66 2 9 213 12 218 1.30e-95 278
MS.gene050809.t1 AT1G02335 61.353 207 79 1 8 213 12 218 5.69e-89 261
MS.gene050809.t1 AT3G62020 67.403 181 58 1 34 213 9 189 1.13e-85 251
MS.gene050809.t1 AT5G26700 57.653 196 80 1 18 213 20 212 1.00e-76 230
MS.gene050809.t1 AT3G05930 53.140 207 96 1 8 213 12 218 2.23e-73 221
MS.gene050809.t1 AT1G18970 49.756 205 101 1 7 211 17 219 2.56e-63 196
MS.gene050809.t1 AT1G18980 50.254 197 96 1 15 211 25 219 5.31e-61 190
MS.gene050809.t1 AT5G39150 47.945 219 105 3 1 210 1 219 1.66e-60 189
MS.gene050809.t1 AT5G39110 47.273 220 106 3 1 210 1 220 1.70e-60 189
MS.gene050809.t1 AT3G05950 51.163 215 99 3 3 211 8 222 2.82e-60 189
MS.gene050809.t1 AT5G39120 47.489 219 106 3 1 210 1 219 8.98e-60 187
MS.gene050809.t1 AT5G39180 47.489 219 106 3 1 210 1 219 1.27e-59 187
MS.gene050809.t1 AT5G39160 46.890 209 107 2 7 211 12 220 2.33e-59 186
MS.gene050809.t1 AT5G39190 46.890 209 107 2 7 211 12 220 4.84e-59 185
MS.gene050809.t1 AT5G39130 46.890 209 107 2 7 211 12 220 9.10e-59 184
MS.gene050809.t1 AT4G14630 47.926 217 106 3 1 210 6 222 3.32e-58 183
MS.gene050809.t1 AT3G04200 48.148 216 106 3 3 212 9 224 1.16e-57 182
MS.gene050809.t1 AT5G39160 46.190 210 103 3 7 211 12 216 5.43e-56 177
MS.gene050809.t1 AT5G38910 46.635 208 107 2 7 210 12 219 2.21e-55 176
MS.gene050809.t1 AT5G38960 47.805 205 102 3 12 211 19 223 3.48e-55 175
MS.gene050809.t1 AT5G38940 47.716 197 99 2 18 210 25 221 2.71e-52 168
MS.gene050809.t1 AT5G38930 47.000 200 102 2 15 210 22 221 3.79e-52 167
MS.gene050809.t1 AT5G38940 47.716 197 99 2 18 210 49 245 4.03e-52 168
MS.gene050809.t1 AT5G39160 42.857 210 92 3 7 211 12 198 9.00e-50 161
MS.gene050809.t1 AT5G39190 42.857 210 92 3 7 211 12 198 1.07e-49 160
MS.gene050809.t1 AT3G04170 43.779 217 113 4 3 213 8 221 1.81e-49 161
MS.gene050809.t1 AT3G04150 43.256 215 113 4 3 208 8 222 9.13e-49 159
MS.gene050809.t1 AT3G04150 40.789 228 113 4 3 208 8 235 7.00e-48 157
MS.gene050809.t1 AT3G04190 44.330 194 104 2 19 208 26 219 1.26e-47 156
MS.gene050809.t1 AT3G04180 43.299 194 106 2 19 208 26 219 3.57e-47 155
MS.gene050809.t1 AT1G10460 41.500 200 112 3 16 210 16 215 3.38e-46 152
MS.gene050809.t1 AT5G61750 41.573 178 102 1 1 176 1 178 1.99e-43 145
MS.gene050809.t1 AT3G10080 38.424 203 117 4 15 212 22 221 2.03e-41 140
MS.gene050809.t1 AT3G10080 38.424 203 117 4 15 212 93 292 9.23e-41 140
MS.gene050809.t1 AT1G74820 39.894 188 111 1 23 210 40 225 2.53e-40 137
MS.gene050809.t1 AT5G20630 36.967 211 130 2 1 211 1 208 2.54e-38 132
MS.gene050809.t1 AT5G38910 37.864 206 91 2 7 210 12 182 5.60e-36 125
MS.gene050809.t1 AT1G72610 38.421 190 115 1 22 211 18 205 6.40e-36 125
MS.gene050809.t1 AT5G38950 42.857 63 36 0 139 201 2 64 5.02e-11 58.2

Find 59 sgRNAs with CRISPR-Local

Find 84 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTTCCTTGGTACCAATT+TGG 0.208001 7.1:+4157330 None:intergenic
CCTCGCAGGGTTGTTGCTTC+TGG 0.229387 7.1:-4158528 MS.gene050809:CDS
GTACATAACCACTGTTCTTT+TGG 0.233211 7.1:+4157465 None:intergenic
TGGAAATGAACCAATCCTTT+AGG 0.302524 7.1:+4157485 None:intergenic
TTGACTCAAGCATTCCAAAT+TGG 0.317621 7.1:-4157344 MS.gene050809:CDS
GCTTGAGTCAAAATATTATC+TGG 0.334327 7.1:+4157356 None:intergenic
GATATCAAAGACTATTGTTA+AGG 0.351789 7.1:-4157525 MS.gene050809:CDS
TGTGTTGCAGACCTTGCTTC+TGG 0.354120 7.1:-4158458 MS.gene050809:intron
CAATCCTTGATCTCACTACT+TGG 0.371152 7.1:+4157283 None:intergenic
GTTGTTTGTGGCTCCTGGTT+TGG 0.387912 7.1:+4157742 None:intergenic
GTACCTGCTGCAGTAATTGC+AGG 0.389830 7.1:-4157446 MS.gene050809:CDS
ATATCAAAGACTATTGTTAA+GGG 0.409296 7.1:-4157524 MS.gene050809:CDS
CAACACACTTGGTGTGTCAT+TGG 0.413477 7.1:-4157669 MS.gene050809:CDS
TTAACAGCGATTCTAGTGAA+TGG 0.422863 7.1:-4157824 MS.gene050809:intron
TTGAAGGTCAATTAGATGTT+GGG 0.424187 7.1:-4157571 MS.gene050809:CDS
AATGTGTTGTTTGTGGCTCC+TGG 0.432005 7.1:+4157737 None:intergenic
CACCAAGTGTGTTGAGTCCT+GGG 0.432787 7.1:+4157678 None:intergenic
GAAACATTTGTGTTTCCTAA+AGG 0.432964 7.1:-4157500 MS.gene050809:CDS
GTCAAAATATTATCTGGAAC+AGG 0.434168 7.1:+4157362 None:intergenic
GAGATTGTGTTTGTTCTTGA+AGG 0.435097 7.1:-4157587 MS.gene050809:CDS
GGAGCCACAAACAACACATT+TGG 0.436644 7.1:-4157734 MS.gene050809:CDS
CTTGAAGGTCAATTAGATGT+TGG 0.439258 7.1:-4157572 MS.gene050809:CDS
ATTTGTGTTTCCTAAAGGAT+TGG 0.463106 7.1:-4157495 MS.gene050809:CDS
AACATTGGCTAAGGTTACTA+AGG 0.477034 7.1:+4157709 None:intergenic
ACAGAGGTCTTGAAGATTGT+CGG 0.481708 7.1:+4158478 None:intergenic
CAGAGGTCTTGAAGATTGTC+GGG 0.482659 7.1:+4158479 None:intergenic
GTAGAAGCAAACAAAGTAAG+AGG 0.485526 7.1:+4157389 None:intergenic
TGGTTTGGCTAGTACGTTGG+TGG 0.495482 7.1:+4157757 None:intergenic
TCCTGGTTTGGCTAGTACGT+TGG 0.504209 7.1:+4157754 None:intergenic
GAAATCAGCTGCGGTTACAT+TGG 0.516657 7.1:+4157781 None:intergenic
AATCCTGCAATTACTGCAGC+AGG 0.520151 7.1:+4157443 None:intergenic
GCTGCGGTTACATTGGAAGC+TGG 0.520487 7.1:+4157788 None:intergenic
ACACCAAGTGTGTTGAGTCC+TGG 0.524633 7.1:+4157677 None:intergenic
GGAACCAAATGTGTTGTTTG+TGG 0.527740 7.1:+4157730 None:intergenic
CAAATGATGAAGCTCCTCGC+AGG 0.535137 7.1:-4158542 None:intergenic
GCCAATGTTCAGAAAATCCC+AGG 0.563692 7.1:-4157695 MS.gene050809:CDS
ATCCCAGGACTCAACACACT+TGG 0.570656 7.1:-4157680 MS.gene050809:CDS
CACGTGGGTGAGTGTGAGGT+GGG 0.576033 7.1:+4157615 None:intergenic
AAGTTCAGAAAATCAAGTCT+AGG 0.576600 7.1:-4157313 MS.gene050809:CDS
GCACGTGGGTGAGTGTGAGG+TGG 0.584372 7.1:+4157614 None:intergenic
AAATGATGAAGCTCCTCGCA+GGG 0.586522 7.1:-4158541 None:intergenic
AGCATTCCAAATTGGTACCA+AGG 0.587841 7.1:-4157336 MS.gene050809:CDS
AATCCTTGATCTCACTACTT+GGG 0.605443 7.1:+4157284 None:intergenic
CAATAGTCAATTGCAAGGAA+CGG 0.606871 7.1:-4157420 MS.gene050809:CDS
AACACAATCTCAGTTGCACG+TGG 0.610170 7.1:+4157599 None:intergenic
ACCAACGTACTAGCCAAACC+AGG 0.618402 7.1:-4157755 MS.gene050809:CDS
CGTATTGACTATGCTGTAGG+TGG 0.621828 7.1:-4157644 MS.gene050809:CDS
GTTCATTTCCAAAAGAACAG+TGG 0.623665 7.1:-4157473 MS.gene050809:CDS
AAAATATTATCTGGAACAGG+TGG 0.624953 7.1:+4157365 None:intergenic
ATGTAACGGTACCAGAAGCA+AGG 0.638804 7.1:+4158447 None:intergenic
GGATTCAATAGTCAATTGCA+AGG 0.643876 7.1:-4157425 MS.gene050809:CDS
GCACGTATTGACTATGCTGT+AGG 0.654744 7.1:-4157647 MS.gene050809:CDS
GTTGCACGTGGGTGAGTGTG+AGG 0.660628 7.1:+4157611 None:intergenic
GTCGGGATCAGCAGTGACAG+AGG 0.662254 7.1:+4158496 None:intergenic
CCAGAAGCAACAACCCTGCG+AGG 0.671018 7.1:+4158528 None:intergenic
GGGATCAGCAGTGACAGAGG+TGG 0.687303 7.1:+4158499 None:intergenic
GTTGGTGGAGAAATCAGCTG+CGG 0.730459 7.1:+4157772 None:intergenic
ACACAATCTCAGTTGCACGT+GGG 0.741428 7.1:+4157600 None:intergenic
AAGCAAGGTCTGCAACACAG+AGG 0.751663 7.1:+4158462 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATATAAGAAAG+AGG + chr7.1:4157594-4157613 None:intergenic 10.0%
!! TATGATATTATAAAAGATAA+GGG + chr7.1:4157755-4157774 None:intergenic 10.0%
!! AAAGTTAATCATATTCATAT+AGG + chr7.1:4157721-4157740 None:intergenic 15.0%
!! GTATGATATTATAAAAGATA+AGG + chr7.1:4157756-4157775 None:intergenic 15.0%
!! ATATCAAAGACTATTGTTAA+GGG - chr7.1:4158310-4158329 MS.gene050809:intron 20.0%
!! TTAATCATATTCATATAGGT+GGG + chr7.1:4157717-4157736 None:intergenic 20.0%
! AGGATTGCATATAATGATTA+AGG + chr7.1:4157574-4157593 None:intergenic 25.0%
! CAATTATAGTATCTTTCTGA+AGG - chr7.1:4157779-4157798 MS.gene050809:CDS 25.0%
! CTTCAGAAAGATACTATAAT+TGG + chr7.1:4157781-4157800 None:intergenic 25.0%
! GATATCAAAGACTATTGTTA+AGG - chr7.1:4158309-4158328 MS.gene050809:intron 25.0%
! GGAAAAAGTGAAAATGAAAA+GGG + chr7.1:4157552-4157571 None:intergenic 25.0%
! GGATTGCATATAATGATTAA+GGG + chr7.1:4157573-4157592 None:intergenic 25.0%
! GTACTTAGCAACATTAATTA+TGG - chr7.1:4157501-4157520 MS.gene050809:CDS 25.0%
! GTTAATCATATTCATATAGG+TGG + chr7.1:4157718-4157737 None:intergenic 25.0%
! TCAATAAAAAGCCATATCAA+AGG + chr7.1:4157664-4157683 None:intergenic 25.0%
! TTATGGTTGAATTATTGTGA+TGG - chr7.1:4157959-4157978 MS.gene050809:intron 25.0%
! TTCTTGTCTTACAATTCTTA+TGG - chr7.1:4157942-4157961 MS.gene050809:intron 25.0%
!! CATATTATTGATAGCATGAT+TGG - chr7.1:4157844-4157863 MS.gene050809:intron 25.0%
AAGTTCAGAAAATCAAGTCT+AGG - chr7.1:4158521-4158540 MS.gene050809:CDS 30.0%
ATCCAACTAACTCTCTAATT+AGG - chr7.1:4157628-4157647 MS.gene050809:CDS 30.0%
ATTTGTGTTTCCTAAAGGAT+TGG - chr7.1:4158339-4158358 MS.gene050809:intron 30.0%
GAAACATTTGTGTTTCCTAA+AGG - chr7.1:4158334-4158353 MS.gene050809:intron 30.0%
GCTTGAGTCAAAATATTATC+TGG + chr7.1:4158481-4158500 None:intergenic 30.0%
GGGAAAAAGTGAAAATGAAA+AGG + chr7.1:4157553-4157572 None:intergenic 30.0%
TTAATTATGGATCGAAAAGC+TGG - chr7.1:4157514-4157533 MS.gene050809:CDS 30.0%
TTGAAGGTCAATTAGATGTT+GGG - chr7.1:4158263-4158282 MS.gene050809:intron 30.0%
! AAAATATTATCTGGAACAGG+TGG + chr7.1:4158472-4158491 None:intergenic 30.0%
! CGATATACATACTTGTTTCT+TGG - chr7.1:4157910-4157929 MS.gene050809:intron 30.0%
! GTCAAAATATTATCTGGAAC+AGG + chr7.1:4158475-4158494 None:intergenic 30.0%
CAATAGTCAATTGCAAGGAA+CGG - chr7.1:4158414-4158433 MS.gene050809:intron 35.0%
CTTGAAGGTCAATTAGATGT+TGG - chr7.1:4158262-4158281 MS.gene050809:intron 35.0%
GAGATTGTGTTTGTTCTTGA+AGG - chr7.1:4158247-4158266 MS.gene050809:intron 35.0%
GGATTCAATAGTCAATTGCA+AGG - chr7.1:4158409-4158428 MS.gene050809:intron 35.0%
GTAGAAGCAAACAAAGTAAG+AGG + chr7.1:4158448-4158467 None:intergenic 35.0%
GTTCATTTCCAAAAGAACAG+TGG - chr7.1:4158361-4158380 MS.gene050809:intron 35.0%
TGGAAATGAACCAATCCTTT+AGG + chr7.1:4158352-4158371 None:intergenic 35.0%
TGGTTGAATTATTGTGATGG+TGG - chr7.1:4157962-4157981 MS.gene050809:intron 35.0%
TTAACAGCGATTCTAGTGAA+TGG - chr7.1:4158010-4158029 MS.gene050809:intron 35.0%
TTGACTCAAGCATTCCAAAT+TGG - chr7.1:4158490-4158509 MS.gene050809:CDS 35.0%
! AAAAGCCATATCAAAGGTGT+TGG + chr7.1:4157658-4157677 None:intergenic 35.0%
! AACATTGGCTAAGGTTACTA+AGG + chr7.1:4158128-4158147 None:intergenic 35.0%
! CTTGATTTTCTGAACTTCCT+TGG + chr7.1:4158518-4158537 None:intergenic 35.0%
! GTACATAACCACTGTTCTTT+TGG + chr7.1:4158372-4158391 None:intergenic 35.0%
!! GATTTTCTGAACATTGGCTA+AGG + chr7.1:4158137-4158156 None:intergenic 35.0%
ACAGAGGTCTTGAAGATTGT+CGG + chr7.1:4157359-4157378 None:intergenic 40.0%
AGCATTCCAAATTGGTACCA+AGG - chr7.1:4158498-4158517 MS.gene050809:CDS 40.0%
GAACTTCCTTGGTACCAATT+TGG + chr7.1:4158507-4158526 None:intergenic 40.0%
GGCCTAATTAGAGAGTTAGT+TGG + chr7.1:4157633-4157652 None:intergenic 40.0%
! TCCTGGGATTTTCTGAACAT+TGG + chr7.1:4158143-4158162 None:intergenic 40.0%
!! GGAACCAAATGTGTTGTTTG+TGG + chr7.1:4158107-4158126 None:intergenic 40.0%
AACACAATCTCAGTTGCACG+TGG + chr7.1:4158238-4158257 None:intergenic 45.0%
AATCCTGCAATTACTGCAGC+AGG + chr7.1:4158394-4158413 None:intergenic 45.0%
ACACAATCTCAGTTGCACGT+GGG + chr7.1:4158237-4158256 None:intergenic 45.0%
ATGTAACGGTACCAGAAGCA+AGG + chr7.1:4157390-4157409 None:intergenic 45.0%
CAGAGGTCTTGAAGATTGTC+GGG + chr7.1:4157358-4157377 None:intergenic 45.0%
GAAATCAGCTGCGGTTACAT+TGG + chr7.1:4158056-4158075 None:intergenic 45.0%
GCCAATGTTCAGAAAATCCC+AGG - chr7.1:4158139-4158158 MS.gene050809:intron 45.0%
GCCTACCAACACCTTTGATA+TGG - chr7.1:4157650-4157669 MS.gene050809:CDS 45.0%
GGAGCCACAAACAACACATT+TGG - chr7.1:4158100-4158119 MS.gene050809:intron 45.0%
!! AATGTGTTGTTTGTGGCTCC+TGG + chr7.1:4158100-4158119 None:intergenic 45.0%
!! CAACACACTTGGTGTGTCAT+TGG - chr7.1:4158165-4158184 MS.gene050809:intron 45.0%
!! CGTATTGACTATGCTGTAGG+TGG - chr7.1:4158190-4158209 MS.gene050809:intron 45.0%
!! GCACGTATTGACTATGCTGT+AGG - chr7.1:4158187-4158206 MS.gene050809:intron 45.0%
!! GCCATATCAAAGGTGTTGGT+AGG + chr7.1:4157654-4157673 None:intergenic 45.0%
!! ATTATTATTAATTAATGTAA+CGG + chr7.1:4157404-4157423 None:intergenic 5.0%
AAGCAAGGTCTGCAACACAG+AGG + chr7.1:4157375-4157394 None:intergenic 50.0%
ACACCAAGTGTGTTGAGTCC+TGG + chr7.1:4158160-4158179 None:intergenic 50.0%
ACCAACGTACTAGCCAAACC+AGG - chr7.1:4158079-4158098 MS.gene050809:intron 50.0%
ATCCCAGGACTCAACACACT+TGG - chr7.1:4158154-4158173 MS.gene050809:intron 50.0%
CACCAAGTGTGTTGAGTCCT+GGG + chr7.1:4158159-4158178 None:intergenic 50.0%
GTACCTGCTGCAGTAATTGC+AGG - chr7.1:4158388-4158407 MS.gene050809:intron 50.0%
GTTGTTTGTGGCTCCTGGTT+TGG + chr7.1:4158095-4158114 None:intergenic 50.0%
TGTGTTGCAGACCTTGCTTC+TGG - chr7.1:4157376-4157395 MS.gene050809:CDS 50.0%
! GTTGGTGGAGAAATCAGCTG+CGG + chr7.1:4158065-4158084 None:intergenic 50.0%
! TGGTTTGGCTAGTACGTTGG+TGG + chr7.1:4158080-4158099 None:intergenic 50.0%
!! TCCTGGTTTGGCTAGTACGT+TGG + chr7.1:4158083-4158102 None:intergenic 50.0%
GCTGCGGTTACATTGGAAGC+TGG + chr7.1:4158049-4158068 None:intergenic 55.0%
CACGTGGGTGAGTGTGAGGT+GGG + chr7.1:4158222-4158241 None:intergenic 60.0%
CCAGAAGCAACAACCCTGCG+AGG + chr7.1:4157309-4157328 None:intergenic 60.0%
GGGATCAGCAGTGACAGAGG+TGG + chr7.1:4157338-4157357 None:intergenic 60.0%
GTCGGGATCAGCAGTGACAG+AGG + chr7.1:4157341-4157360 None:intergenic 60.0%
GTTGCACGTGGGTGAGTGTG+AGG + chr7.1:4158226-4158245 None:intergenic 60.0%
! CCTCGCAGGGTTGTTGCTTC+TGG - chr7.1:4157306-4157325 MS.gene050809:CDS 60.0%
GCACGTGGGTGAGTGTGAGG+TGG + chr7.1:4158223-4158242 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4157298 4158558 4157298 ID=MS.gene050809
chr7.1 mRNA 4157298 4158558 4157298 ID=MS.gene050809.t1;Parent=MS.gene050809
chr7.1 exon 4158459 4158558 4158459 ID=MS.gene050809.t1.exon1;Parent=MS.gene050809.t1
chr7.1 CDS 4158459 4158558 4158459 ID=cds.MS.gene050809.t1;Parent=MS.gene050809.t1
chr7.1 exon 4157298 4157839 4157298 ID=MS.gene050809.t1.exon2;Parent=MS.gene050809.t1
chr7.1 CDS 4157298 4157839 4157298 ID=cds.MS.gene050809.t1;Parent=MS.gene050809.t1
Gene Sequence

>MS.gene050809

ATGAAGCTCCTCGCAGGGTTGTTGCTTCTGGTGTTAACCACCTCTGTCACTGCTGATCCCGACAATCTTCAAGACCTCTGTGTTGCAGACCTTGCTTCTGGTACCGTTACATTAATTAATAATAATCTCATGAAATATTTCTTTTCTTTTCATATTATATTATATATTCTATATAGAGCATATAACTTTCATGCTAATTATTAGTACTTAGCAACATTAATTATGGATCGAAAAGCTGGAAATAATTAGTTCCCTTTTCATTTTCACTTTTTCCCTTAATCATTATATGCAATCCTCTTTCTTATATTTTTTTTTTTTTCAGTCATGTTAATCCAACTAACTCTCTAATTAGGCCTACCAACACCTTTGATATGGCTTTTTATTGACTTTAATGTTTAATCATTCAGAACAATAATCCCACCTATATGAATATGATTAACTTTTCTTAATTTGTCCCTTATCTTTTATAATATCATACTACCAATTATAGTATCTTTCTGAAGGAAATTGATTTAAGTACTTTTTTGCAAATTTAAGAAATCATTGCATATTATTGATAGCATGATTGGCAACAAGAATTATATGTACTTCTTAAAGTAATTAGTCAACGATCGATATACATACTTGTTTCTTGGTTGAGTTTTTTCTTGTCTTACAATTCTTATGGTTGAATTATTGTGATGGTGGTAATTAAATTATGTGTTGATTAAATTTAACAGCGATTCTAGTGAATGGATTCACGTGCAAACCAGCTTCCAATGTAACCGCAGCTGATTTCTCCACCAACGTACTAGCCAAACCAGGAGCCACAAACAACACATTTGGTTCCTTAGTAACCTTAGCCAATGTTCAGAAAATCCCAGGACTCAACACACTTGGTGTGTCATTGGCACGTATTGACTATGCTGTAGGTGGACTGAACCCACCTCACACTCACCCACGTGCAACTGAGATTGTGTTTGTTCTTGAAGGTCAATTAGATGTTGGGTTTGTTACAACAAATAATGTTTTGATATCAAAGACTATTGTTAAGGGTGAAACATTTGTGTTTCCTAAAGGATTGGTTCATTTCCAAAAGAACAGTGGTTATGTACCTGCTGCAGTAATTGCAGGATTCAATAGTCAATTGCAAGGAACGGTGAATATTCCTCTTACTTTGTTTGCTTCTACACCACCTGTTCCAGATAATATTTTGACTCAAGCATTCCAAATTGGTACCAAGGAAGTTCAGAAAATCAAGTCTAGGCTTGCACCCAAGTAG

Protein sequence

>MS.gene050809.t1

MKLLAGLLLLVLTTSVTADPDNLQDLCVADLASAILVNGFTCKPASNVTAADFSTNVLAKPGATNNTFGSLVTLANVQKIPGLNTLGVSLARIDYAVGGLNPPHTHPRATEIVFVLEGQLDVGFVTTNNVLISKTIVKGETFVFPKGLVHFQKNSGYVPAAVIAGFNSQLQGTVNIPLTLFASTPPVPDNILTQAFQIGTKEVQKIKSRLAPK