Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06487.t1 | XP_003602475.1 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.80E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06487.t1 | G7JA94 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.3e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049366 | MS.gene06487 | 0.898335 | 5.87E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06487.t1 | MTR_3g094780 | 90.283 | 247 | 16 | 2 | 1 | 240 | 1 | 246 | 1.61e-146 | 409 |
| MS.gene06487.t1 | MTR_3g094780 | 88.770 | 187 | 13 | 2 | 1 | 180 | 1 | 186 | 1.09e-111 | 318 |
| MS.gene06487.t1 | MTR_4g078130 | 49.167 | 120 | 59 | 1 | 68 | 187 | 90 | 207 | 8.58e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06487.t1 | AT5G09995 | 54.497 | 189 | 81 | 2 | 52 | 240 | 73 | 256 | 4.97e-65 | 202 |
| MS.gene06487.t1 | AT5G09995 | 54.497 | 189 | 82 | 2 | 52 | 240 | 73 | 257 | 6.73e-65 | 202 |
| MS.gene06487.t1 | AT5G09995 | 66.412 | 131 | 44 | 0 | 52 | 182 | 73 | 203 | 3.44e-54 | 173 |
| MS.gene06487.t1 | AT1G08530 | 47.581 | 124 | 63 | 1 | 64 | 187 | 94 | 215 | 4.33e-31 | 115 |
| MS.gene06487.t1 | AT1G08530 | 50.000 | 110 | 55 | 0 | 64 | 173 | 94 | 203 | 1.40e-29 | 111 |
| MS.gene06487.t1 | AT1G08530 | 54.878 | 82 | 37 | 0 | 64 | 145 | 94 | 175 | 1.15e-20 | 86.7 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCCTTGGGTAATTTCT+TGG | 0.214369 | 3.2:-79261623 | None:intergenic |
| CGCGAGAGACGGAATTATTA+AGG | 0.254183 | 3.2:+79262245 | MS.gene06487:CDS |
| TTCTGCAATTCCCACTCTTC+TGG | 0.267213 | 3.2:+79261108 | MS.gene06487:CDS |
| ACCCGAGTCAGGCTCAGTTT+TGG | 0.293260 | 3.2:-79262193 | None:intergenic |
| CATCTCTTCCCCTCTCTCAT+TGG | 0.301487 | 3.2:+79260930 | MS.gene06487:CDS |
| ATGGCTGCAATTCGATTATC+TGG | 0.309283 | 3.2:+79261276 | MS.gene06487:CDS |
| GTTCTATTTAGCTTCGTTGC+AGG | 0.323824 | 3.2:+79262155 | MS.gene06487:intron |
| TCATCACTGGACGTGGAAAA+AGG | 0.330267 | 3.2:+79262328 | MS.gene06487:CDS |
| CGAATTGCAGCCATTGTATC+AGG | 0.330721 | 3.2:-79261267 | None:intergenic |
| ACCACTCAACTCAGTGATCT+TGG | 0.347530 | 3.2:+79261318 | MS.gene06487:CDS |
| GGAATCACTTGAAAAGCTTA+TGG | 0.380649 | 3.2:+79261224 | MS.gene06487:CDS |
| AACTTGAAGCTTGAAATTGC+AGG | 0.393308 | 3.2:-79260760 | None:intergenic |
| GAGGGATTGGGGAAGAGCGA+GGG | 0.394776 | 3.2:-79260864 | None:intergenic |
| ACCATGCCTTCTTCATCTTC+AGG | 0.400589 | 3.2:+79261699 | MS.gene06487:CDS |
| ACCGCAAGTGCACCCGAGTC+AGG | 0.412452 | 3.2:-79262204 | None:intergenic |
| GTTGTGGCGTAGAGAGGGAT+TGG | 0.442852 | 3.2:-79260877 | None:intergenic |
| TTCTTCAAGCTTAGACAAAT+CGG | 0.446605 | 3.2:-79260791 | None:intergenic |
| AGGGATTGGGGAAGAGCGAG+GGG | 0.456892 | 3.2:-79260863 | None:intergenic |
| AGAGGGATTGGGGAAGAGCG+AGG | 0.457366 | 3.2:-79260865 | None:intergenic |
| GTGGTTCGCTCGGCTGAGGA+GGG | 0.461041 | 3.2:+79261660 | MS.gene06487:CDS |
| TTGTGGCGTAGAGAGGGATT+GGG | 0.466139 | 3.2:-79260876 | None:intergenic |
| CGTGGTTCGCTCGGCTGAGG+AGG | 0.467600 | 3.2:+79261659 | MS.gene06487:CDS |
| TTTGCTCTCAAGTTCATCAC+TGG | 0.470008 | 3.2:+79262315 | MS.gene06487:CDS |
| CTCAAGTTCATCACTGGACG+TGG | 0.470643 | 3.2:+79262321 | MS.gene06487:CDS |
| GAGAAGAGTGAGGTGGCGTT+GGG | 0.471069 | 3.2:-79260960 | None:intergenic |
| TGTGGCGTAGAGAGGGATTG+GGG | 0.474365 | 3.2:-79260875 | None:intergenic |
| TCGCGTGGTTCGCTCGGCTG+AGG | 0.474505 | 3.2:+79261656 | MS.gene06487:CDS |
| AAGAAGGCATGGTGGTTAAA+CGG | 0.474640 | 3.2:-79261689 | None:intergenic |
| GCCCAAAACTGAGCCTGACT+CGG | 0.481716 | 3.2:+79262191 | MS.gene06487:CDS |
| ATCCACTCGCGTGGTTCGCT+CGG | 0.484762 | 3.2:+79261650 | MS.gene06487:CDS |
| GTACGTTGTGAATGAGTGTT+GGG | 0.488937 | 3.2:-79260821 | None:intergenic |
| CCACTCAACTCAGTGATCTT+GGG | 0.489821 | 3.2:+79261319 | MS.gene06487:CDS |
| GTACCACTACGGCGAGAGCT+TGG | 0.490321 | 3.2:-79260982 | None:intergenic |
| GGAGAAGAGTGAGGTGGCGT+TGG | 0.492814 | 3.2:-79260961 | None:intergenic |
| TTCTATTTAGCTTCGTTGCA+GGG | 0.496963 | 3.2:+79262156 | MS.gene06487:intron |
| GCGAAGGTTGTGGCGTAGAG+AGG | 0.502934 | 3.2:-79260883 | None:intergenic |
| AACAAGGCTTACCAGAAGAG+TGG | 0.509829 | 3.2:-79261119 | None:intergenic |
| TCGCATTACATCTCCACCGT+TGG | 0.514652 | 3.2:+79260902 | MS.gene06487:CDS |
| GCCTGACTCGGGTGCACTTG+CGG | 0.515689 | 3.2:+79262203 | MS.gene06487:CDS |
| GCGAGAGACGGAATTATTAA+GGG | 0.524578 | 3.2:+79262246 | MS.gene06487:CDS |
| CCCAAAACTGAGCCTGACTC+GGG | 0.536444 | 3.2:+79262192 | MS.gene06487:CDS |
| GGGGTTTAGTAGTAAAAGAG+AGG | 0.540631 | 3.2:-79260844 | None:intergenic |
| TGTGAATGAGTGTTGGGGAA+AGG | 0.547861 | 3.2:-79260815 | None:intergenic |
| TCCGCAAAAGGCGCGAGAGA+CGG | 0.551229 | 3.2:+79262234 | MS.gene06487:CDS |
| GCGGTGGCAAGATCCGCAAA+AGG | 0.551743 | 3.2:+79262222 | MS.gene06487:CDS |
| CGAAGGTTGTGGCGTAGAGA+GGG | 0.555024 | 3.2:-79260882 | None:intergenic |
| ACTTGAAGCTTGAAATTGCA+GGG | 0.555600 | 3.2:-79260759 | None:intergenic |
| TGCAATTCGATTATCTGGAA+TGG | 0.567276 | 3.2:+79261281 | MS.gene06487:CDS |
| AGAGGAACTTCCTGATACAA+TGG | 0.577089 | 3.2:+79261257 | MS.gene06487:CDS |
| ACCTGAAGATGAAGAAGGCA+TGG | 0.579013 | 3.2:-79261700 | None:intergenic |
| AGCCGAGCGAACCACGCGAG+TGG | 0.579367 | 3.2:-79261652 | None:intergenic |
| TGGTTCGCTCGGCTGAGGAG+GGG | 0.581712 | 3.2:+79261661 | MS.gene06487:CDS |
| GCTTATGGATACAGCAAGAG+AGG | 0.589075 | 3.2:+79261239 | MS.gene06487:CDS |
| ACAAGGCTTACCAGAAGAGT+GGG | 0.589685 | 3.2:-79261118 | None:intergenic |
| GGGTTTAGTAGTAAAAGAGA+GGG | 0.590751 | 3.2:-79260843 | None:intergenic |
| GGTACGTTGTGAATGAGTGT+TGG | 0.591363 | 3.2:-79260822 | None:intergenic |
| GGAGAAGTTCCAATGAGAGA+GGG | 0.600387 | 3.2:-79260939 | None:intergenic |
| AGGTAACCTGAAGATGAAGA+AGG | 0.601064 | 3.2:-79261705 | None:intergenic |
| TCTCCAAGCTCTCGCCGTAG+TGG | 0.605139 | 3.2:+79260979 | MS.gene06487:CDS |
| CAAAACTTGAGAATTGAGCA+AGG | 0.606164 | 3.2:-79262296 | None:intergenic |
| GGGAGAAGTTCCAATGAGAG+AGG | 0.608355 | 3.2:-79260940 | None:intergenic |
| GAGATGTAATGCGAAGGTTG+TGG | 0.614582 | 3.2:-79260893 | None:intergenic |
| TGACTCGGGTGCACTTGCGG+TGG | 0.623387 | 3.2:+79262206 | MS.gene06487:CDS |
| GAGAAGTTCCAATGAGAGAG+GGG | 0.631741 | 3.2:-79260938 | None:intergenic |
| TTCAAGCTTAGACAAATCGG+TGG | 0.634472 | 3.2:-79260788 | None:intergenic |
| CGAGAGCTTGGAGAAGAGTG+AGG | 0.641388 | 3.2:-79260970 | None:intergenic |
| GGGAAGAGATGAAGAACCAA+CGG | 0.642166 | 3.2:-79260918 | None:intergenic |
| CCCAAGATCACTGAGTTGAG+TGG | 0.642427 | 3.2:-79261319 | None:intergenic |
| CGTTGCAGGGAATCGAACAA+AGG | 0.649612 | 3.2:+79262169 | MS.gene06487:CDS |
| TGCAGCCAAGAAATTACCCA+AGG | 0.660341 | 3.2:+79261618 | MS.gene06487:intron |
| GAGCTTGGAGAAGAGTGAGG+TGG | 0.660991 | 3.2:-79260967 | None:intergenic |
| AAAACTTGAGAATTGAGCAA+GGG | 0.662486 | 3.2:-79262295 | None:intergenic |
| ATTCAGAGTAAGTACCACTA+CGG | 0.674339 | 3.2:-79260993 | None:intergenic |
| GAAGGCTTTCAAGAGAGCAG+CGG | 0.687355 | 3.2:+79261203 | MS.gene06487:intron |
| ACGGTGGAGATGTAATGCGA+AGG | 0.688216 | 3.2:-79260899 | None:intergenic |
| AGTTAAAAGATCCACTCGCG+TGG | 0.696128 | 3.2:+79261641 | MS.gene06487:CDS |
| AAGAGATGAAGAACCAACGG+TGG | 0.703717 | 3.2:-79260915 | None:intergenic |
| TGAAGATGAAGAAGGCATGG+TGG | 0.713708 | 3.2:-79261697 | None:intergenic |
| TACGTTGTGAATGAGTGTTG+GGG | 0.736539 | 3.2:-79260820 | None:intergenic |
| AGACAGCGATATGTACAACG+TGG | 0.808708 | 3.2:+79261077 | MS.gene06487:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGCAAAAAATCAATTTG+AGG | - | chr3.2:79261051-79261070 | None:intergenic | 20.0% |
| !! | GTCATAAAATATTGTTCATT+TGG | + | chr3.2:79262133-79262152 | MS.gene06487:intron | 20.0% |
| !! | TAGTCGTAAATAATTATTTC+TGG | + | chr3.2:79261145-79261164 | MS.gene06487:intron | 20.0% |
| !! | TCTGATGTAATAAATAATGA+AGG | + | chr3.2:79261185-79261204 | MS.gene06487:intron | 20.0% |
| !!! | TATAATTTGAGATTGTAGAT+AGG | + | chr3.2:79261949-79261968 | MS.gene06487:intron | 20.0% |
| ! | CAACAAATTCAATTCAGTAA+CGG | - | chr3.2:79261025-79261044 | None:intergenic | 25.0% |
| ! | CAGCATTATAATAGTGTTAT+AGG | - | chr3.2:79262074-79262093 | None:intergenic | 25.0% |
| ! | TAGATTGATCATATAAAAGC+AGG | - | chr3.2:79261483-79261502 | None:intergenic | 25.0% |
| ! | TGACTAGAATGAATTCAAAA+TGG | - | chr3.2:79261354-79261373 | None:intergenic | 25.0% |
| !! | TAGAATGCAATTTAGAACTA+TGG | + | chr3.2:79262109-79262128 | MS.gene06487:intron | 25.0% |
| AAAACTTGAGAATTGAGCAA+GGG | - | chr3.2:79262298-79262317 | None:intergenic | 30.0% | |
| AAATTGCTACAATTACACTG+CGG | + | chr3.2:79261985-79262004 | MS.gene06487:intron | 30.0% | |
| AACACAAACTCATGATTAGT+AGG | - | chr3.2:79261728-79261747 | None:intergenic | 30.0% | |
| AACAGATACATGTTGGATTA+CGG | + | chr3.2:79261864-79261883 | MS.gene06487:intron | 30.0% | |
| ACACACATTGAAACAGTATT+TGG | + | chr3.2:79261580-79261599 | MS.gene06487:intron | 30.0% | |
| ATACTGTTTCAATGTGTGTT+TGG | - | chr3.2:79261579-79261598 | None:intergenic | 30.0% | |
| ATATGGTTCCTTCACATTAA+CGG | - | chr3.2:79261895-79261914 | None:intergenic | 30.0% | |
| TCTTACAACATATAGGTGTT+AGG | + | chr3.2:79261922-79261941 | MS.gene06487:intron | 30.0% | |
| TTATTTACGACTACCAAACA+AGG | - | chr3.2:79261138-79261157 | None:intergenic | 30.0% | |
| TTCTTCAAGCTTAGACAAAT+CGG | - | chr3.2:79260794-79260813 | None:intergenic | 30.0% | |
| !! | ATTCAATTCAGTAACGGATT+TGG | - | chr3.2:79261019-79261038 | None:intergenic | 30.0% |
| AACTTGAAGCTTGAAATTGC+AGG | - | chr3.2:79260763-79260782 | None:intergenic | 35.0% | |
| ACTTGAAGCTTGAAATTGCA+GGG | - | chr3.2:79260762-79260781 | None:intergenic | 35.0% | |
| ATTCAGAGTAAGTACCACTA+CGG | - | chr3.2:79260996-79261015 | None:intergenic | 35.0% | |
| CAAAACTTGAGAATTGAGCA+AGG | - | chr3.2:79262299-79262318 | None:intergenic | 35.0% | |
| GGAATCACTTGAAAAGCTTA+TGG | + | chr3.2:79261224-79261243 | MS.gene06487:CDS | 35.0% | |
| GGGTTTAGTAGTAAAAGAGA+GGG | - | chr3.2:79260846-79260865 | None:intergenic | 35.0% | |
| TAACTCCTTGGGTAATTTCT+TGG | - | chr3.2:79261626-79261645 | None:intergenic | 35.0% | |
| TCCAACATGTATCTGTTGTA+AGG | - | chr3.2:79261861-79261880 | None:intergenic | 35.0% | |
| TGCAATTCGATTATCTGGAA+TGG | + | chr3.2:79261281-79261300 | MS.gene06487:CDS | 35.0% | |
| ! | TTCTATTTAGCTTCGTTGCA+GGG | + | chr3.2:79262156-79262175 | MS.gene06487:intron | 35.0% |
| !! | AGTGGATCTTTTAACTCCTT+GGG | - | chr3.2:79261637-79261656 | None:intergenic | 35.0% |
| AGAGGAACTTCCTGATACAA+TGG | + | chr3.2:79261257-79261276 | MS.gene06487:CDS | 40.0% | |
| AGGTAACCTGAAGATGAAGA+AGG | - | chr3.2:79261708-79261727 | None:intergenic | 40.0% | |
| ATCGATCTAGTCATACGTGT+CGG | + | chr3.2:79261835-79261854 | MS.gene06487:intron | 40.0% | |
| ATGGCTGCAATTCGATTATC+TGG | + | chr3.2:79261276-79261295 | MS.gene06487:CDS | 40.0% | |
| GCCTTACAACAGATACATGT+TGG | + | chr3.2:79261857-79261876 | MS.gene06487:intron | 40.0% | |
| GCGAGAGACGGAATTATTAA+GGG | + | chr3.2:79262246-79262265 | MS.gene06487:CDS | 40.0% | |
| GGGGTTTAGTAGTAAAAGAG+AGG | - | chr3.2:79260847-79260866 | None:intergenic | 40.0% | |
| GTACGTTGTGAATGAGTGTT+GGG | - | chr3.2:79260824-79260843 | None:intergenic | 40.0% | |
| TTCAAGCTTAGACAAATCGG+TGG | - | chr3.2:79260791-79260810 | None:intergenic | 40.0% | |
| TTTGCTCTCAAGTTCATCAC+TGG | + | chr3.2:79262315-79262334 | MS.gene06487:CDS | 40.0% | |
| ! | AAGAAGGCATGGTGGTTAAA+CGG | - | chr3.2:79261692-79261711 | None:intergenic | 40.0% |
| ! | GTTCTATTTAGCTTCGTTGC+AGG | + | chr3.2:79262155-79262174 | MS.gene06487:intron | 40.0% |
| ! | TACGTTGTGAATGAGTGTTG+GGG | - | chr3.2:79260823-79260842 | None:intergenic | 40.0% |
| !! | ATTAAGCGTCGACACATACA+TGG | + | chr3.2:79261762-79261781 | MS.gene06487:intron | 40.0% |
| !! | GAGTGGATCTTTTAACTCCT+TGG | - | chr3.2:79261638-79261657 | None:intergenic | 40.0% |
| AACAAGGCTTACCAGAAGAG+TGG | - | chr3.2:79261122-79261141 | None:intergenic | 45.0% | |
| AAGAGATGAAGAACCAACGG+TGG | - | chr3.2:79260918-79260937 | None:intergenic | 45.0% | |
| ACAAGGCTTACCAGAAGAGT+GGG | - | chr3.2:79261121-79261140 | None:intergenic | 45.0% | |
| ACCACTCAACTCAGTGATCT+TGG | + | chr3.2:79261318-79261337 | MS.gene06487:CDS | 45.0% | |
| ACCATGCCTTCTTCATCTTC+AGG | + | chr3.2:79261699-79261718 | MS.gene06487:CDS | 45.0% | |
| ACCTGAAGATGAAGAAGGCA+TGG | - | chr3.2:79261703-79261722 | None:intergenic | 45.0% | |
| AGACAGCGATATGTACAACG+TGG | + | chr3.2:79261077-79261096 | MS.gene06487:intron | 45.0% | |
| AGTTAAAAGATCCACTCGCG+TGG | + | chr3.2:79261641-79261660 | MS.gene06487:CDS | 45.0% | |
| CCACTCAACTCAGTGATCTT+GGG | + | chr3.2:79261319-79261338 | MS.gene06487:CDS | 45.0% | |
| CGAATTGCAGCCATTGTATC+AGG | - | chr3.2:79261270-79261289 | None:intergenic | 45.0% | |
| CGCGAGAGACGGAATTATTA+AGG | + | chr3.2:79262245-79262264 | MS.gene06487:CDS | 45.0% | |
| GAGAAGTTCCAATGAGAGAG+GGG | - | chr3.2:79260941-79260960 | None:intergenic | 45.0% | |
| GAGATGTAATGCGAAGGTTG+TGG | - | chr3.2:79260896-79260915 | None:intergenic | 45.0% | |
| GCAACCGCAATTTGCAATTG+TGG | - | chr3.2:79262040-79262059 | None:intergenic | 45.0% | |
| GCAGCCACAATTGCAAATTG+CGG | + | chr3.2:79262033-79262052 | MS.gene06487:intron | 45.0% | |
| GCATTCTACAGTCGCAATTG+TGG | - | chr3.2:79262097-79262116 | None:intergenic | 45.0% | |
| GCTTATGGATACAGCAAGAG+AGG | + | chr3.2:79261239-79261258 | MS.gene06487:CDS | 45.0% | |
| GGAGAAGTTCCAATGAGAGA+GGG | - | chr3.2:79260942-79260961 | None:intergenic | 45.0% | |
| GGGAAGAGATGAAGAACCAA+CGG | - | chr3.2:79260921-79260940 | None:intergenic | 45.0% | |
| GGTACGTTGTGAATGAGTGT+TGG | - | chr3.2:79260825-79260844 | None:intergenic | 45.0% | |
| GTCGACACATACATGGATAC+TGG | + | chr3.2:79261769-79261788 | MS.gene06487:intron | 45.0% | |
| TCAACTCAGTGATCTTGGGT+GGG | + | chr3.2:79261323-79261342 | MS.gene06487:intron | 45.0% | |
| TCATCACTGGACGTGGAAAA+AGG | + | chr3.2:79262328-79262347 | MS.gene06487:CDS | 45.0% | |
| TGCAGCCAAGAAATTACCCA+AGG | + | chr3.2:79261618-79261637 | MS.gene06487:intron | 45.0% | |
| TGTGAAGGAACCATATGCGT+CGG | + | chr3.2:79261899-79261918 | MS.gene06487:intron | 45.0% | |
| TGTTGTAAGACCGACGCATA+TGG | - | chr3.2:79261912-79261931 | None:intergenic | 45.0% | |
| TTCTGCAATTCCCACTCTTC+TGG | + | chr3.2:79261108-79261127 | MS.gene06487:CDS | 45.0% | |
| ! | GCGTCGGTCTTACAACATAT+AGG | + | chr3.2:79261915-79261934 | MS.gene06487:intron | 45.0% |
| ! | TGAAGATGAAGAAGGCATGG+TGG | - | chr3.2:79261700-79261719 | None:intergenic | 45.0% |
| !! | CTCTTCTGGTAAGCCTTGTT+TGG | + | chr3.2:79261122-79261141 | MS.gene06487:intron | 45.0% |
| !! | TGTGAATGAGTGTTGGGGAA+AGG | - | chr3.2:79260818-79260837 | None:intergenic | 45.0% |
| ACGGTGGAGATGTAATGCGA+AGG | - | chr3.2:79260902-79260921 | None:intergenic | 50.0% | |
| CATCTCTTCCCCTCTCTCAT+TGG | + | chr3.2:79260930-79260949 | MS.gene06487:CDS | 50.0% | |
| CGGACAAGCCGTTAATGTGA+AGG | + | chr3.2:79261884-79261903 | MS.gene06487:intron | 50.0% | |
| CGTTGCAGGGAATCGAACAA+AGG | + | chr3.2:79262169-79262188 | MS.gene06487:CDS | 50.0% | |
| CTCAACTCAGTGATCTTGGG+TGG | + | chr3.2:79261322-79261341 | MS.gene06487:intron | 50.0% | |
| CTCAAGTTCATCACTGGACG+TGG | + | chr3.2:79262321-79262340 | MS.gene06487:CDS | 50.0% | |
| GAAGGCTTTCAAGAGAGCAG+CGG | + | chr3.2:79261203-79261222 | MS.gene06487:intron | 50.0% | |
| GGGAGAAGTTCCAATGAGAG+AGG | - | chr3.2:79260943-79260962 | None:intergenic | 50.0% | |
| TCGCATTACATCTCCACCGT+TGG | + | chr3.2:79260902-79260921 | MS.gene06487:CDS | 50.0% | |
| TTGTGGCGTAGAGAGGGATT+GGG | - | chr3.2:79260879-79260898 | None:intergenic | 50.0% | |
| ! | CCCAAGATCACTGAGTTGAG+TGG | - | chr3.2:79261322-79261341 | None:intergenic | 50.0% |
| CCCAAAACTGAGCCTGACTC+GGG | + | chr3.2:79262192-79262211 | MS.gene06487:CDS | 55.0% | |
| CGAAGGTTGTGGCGTAGAGA+GGG | - | chr3.2:79260885-79260904 | None:intergenic | 55.0% | |
| CGAGAGCTTGGAGAAGAGTG+AGG | - | chr3.2:79260973-79260992 | None:intergenic | 55.0% | |
| GAGAAGAGTGAGGTGGCGTT+GGG | - | chr3.2:79260963-79260982 | None:intergenic | 55.0% | |
| GAGCTTGGAGAAGAGTGAGG+TGG | - | chr3.2:79260970-79260989 | None:intergenic | 55.0% | |
| GCCCAAAACTGAGCCTGACT+CGG | + | chr3.2:79262191-79262210 | MS.gene06487:CDS | 55.0% | |
| GTTGTGGCGTAGAGAGGGAT+TGG | - | chr3.2:79260880-79260899 | None:intergenic | 55.0% | |
| TGTGGCGTAGAGAGGGATTG+GGG | - | chr3.2:79260878-79260897 | None:intergenic | 55.0% | |
| ! | ACCCGAGTCAGGCTCAGTTT+TGG | - | chr3.2:79262196-79262215 | None:intergenic | 55.0% |
| ! | CCCGAGTCAGGCTCAGTTTT+GGG | - | chr3.2:79262195-79262214 | None:intergenic | 55.0% |
| AGAGGGATTGGGGAAGAGCG+AGG | - | chr3.2:79260868-79260887 | None:intergenic | 60.0% | |
| AGGGATTGGGGAAGAGCGAG+GGG | - | chr3.2:79260866-79260885 | None:intergenic | 60.0% | |
| ATCCACTCGCGTGGTTCGCT+CGG | + | chr3.2:79261650-79261669 | MS.gene06487:CDS | 60.0% | |
| GAGGGATTGGGGAAGAGCGA+GGG | - | chr3.2:79260867-79260886 | None:intergenic | 60.0% | |
| GCGAAGGTTGTGGCGTAGAG+AGG | - | chr3.2:79260886-79260905 | None:intergenic | 60.0% | |
| GCGGTGGCAAGATCCGCAAA+AGG | + | chr3.2:79262222-79262241 | MS.gene06487:CDS | 60.0% | |
| GGAGAAGAGTGAGGTGGCGT+TGG | - | chr3.2:79260964-79260983 | None:intergenic | 60.0% | |
| GTACCACTACGGCGAGAGCT+TGG | - | chr3.2:79260985-79261004 | None:intergenic | 60.0% | |
| TCTCCAAGCTCTCGCCGTAG+TGG | + | chr3.2:79260979-79260998 | MS.gene06487:CDS | 60.0% | |
| ! | TCCGCAAAAGGCGCGAGAGA+CGG | + | chr3.2:79262234-79262253 | MS.gene06487:CDS | 60.0% |
| ! | TCCGTCTCTCGCGCCTTTTG+CGG | - | chr3.2:79262238-79262257 | None:intergenic | 60.0% |
| ACCGCAAGTGCACCCGAGTC+AGG | - | chr3.2:79262207-79262226 | None:intergenic | 65.0% | |
| GTGGTTCGCTCGGCTGAGGA+GGG | + | chr3.2:79261660-79261679 | MS.gene06487:CDS | 65.0% | |
| TGGTTCGCTCGGCTGAGGAG+GGG | + | chr3.2:79261661-79261680 | MS.gene06487:CDS | 65.0% | |
| ! | TGACTCGGGTGCACTTGCGG+TGG | + | chr3.2:79262206-79262225 | MS.gene06487:CDS | 65.0% |
| !! | GCCTGACTCGGGTGCACTTG+CGG | + | chr3.2:79262203-79262222 | MS.gene06487:CDS | 65.0% |
| AGCCGAGCGAACCACGCGAG+TGG | - | chr3.2:79261655-79261674 | None:intergenic | 70.0% | |
| CGTGGTTCGCTCGGCTGAGG+AGG | + | chr3.2:79261659-79261678 | MS.gene06487:CDS | 70.0% | |
| TCGCGTGGTTCGCTCGGCTG+AGG | + | chr3.2:79261656-79261675 | MS.gene06487:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 79260749 | 79262353 | 79260749 | ID=MS.gene06487 |
| chr3.2 | mRNA | 79260749 | 79262353 | 79260749 | ID=MS.gene06487.t1;Parent=MS.gene06487 |
| chr3.2 | exon | 79260749 | 79261000 | 79260749 | ID=MS.gene06487.t1.exon1;Parent=MS.gene06487.t1 |
| chr3.2 | CDS | 79260749 | 79261000 | 79260749 | ID=cds.MS.gene06487.t1;Parent=MS.gene06487.t1 |
| chr3.2 | exon | 79261079 | 79261129 | 79261079 | ID=MS.gene06487.t1.exon2;Parent=MS.gene06487.t1 |
| chr3.2 | CDS | 79261079 | 79261129 | 79261079 | ID=cds.MS.gene06487.t1;Parent=MS.gene06487.t1 |
| chr3.2 | exon | 79261207 | 79261340 | 79261207 | ID=MS.gene06487.t1.exon3;Parent=MS.gene06487.t1 |
| chr3.2 | CDS | 79261207 | 79261340 | 79261207 | ID=cds.MS.gene06487.t1;Parent=MS.gene06487.t1 |
| chr3.2 | exon | 79261623 | 79261720 | 79261623 | ID=MS.gene06487.t1.exon4;Parent=MS.gene06487.t1 |
| chr3.2 | CDS | 79261623 | 79261720 | 79261623 | ID=cds.MS.gene06487.t1;Parent=MS.gene06487.t1 |
| chr3.2 | exon | 79262166 | 79262353 | 79262166 | ID=MS.gene06487.t1.exon5;Parent=MS.gene06487.t1 |
| chr3.2 | CDS | 79262166 | 79262353 | 79262166 | ID=cds.MS.gene06487.t1;Parent=MS.gene06487.t1 |
| Gene Sequence |
| Protein sequence |
