Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049366.t1 | XP_003602475.1 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.80E-97 | 365.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049366.t1 | G7JA94 | 82.6 | 247 | 35 | 2 | 1 | 240 | 1 | 246 | 1.3e-97 | 365.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049366 | MS.gene049627 | 0.800404 | 1.46E-48 | -1.69E-46 |
| MS.gene049366 | MS.gene056692 | 0.823478 | 1.36E-53 | -1.69E-46 |
| MS.gene049366 | MS.gene061150 | 0.803628 | 3.18E-49 | -1.69E-46 |
| MS.gene049366 | MS.gene06288 | 0.810037 | 1.41E-50 | -1.69E-46 |
| MS.gene049366 | MS.gene06487 | 0.898335 | 5.87E-77 | -1.69E-46 |
| MS.gene049366 | MS.gene31043 | 0.983157 | 5.54E-157 | -1.69E-46 |
| MS.gene049366 | MS.gene34678 | 0.808859 | 2.52E-50 | -1.69E-46 |
| MS.gene049366 | MS.gene42676 | 0.805011 | 1.64E-49 | -1.69E-46 |
| MS.gene049366 | MS.gene43492 | 0.80511 | 1.56E-49 | -1.69E-46 |
| MS.gene049366 | MS.gene45693 | 0.814061 | 1.87E-51 | -1.69E-46 |
| MS.gene049366 | MS.gene49126 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene049366 | MS.gene49743 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene049366 | MS.gene55911 | 0.806932 | 6.47E-50 | -1.69E-46 |
| MS.gene049366 | MS.gene56456 | 0.804955 | 1.68E-49 | -1.69E-46 |
| MS.gene049366 | MS.gene82401 | 0.807149 | 5.82E-50 | -1.69E-46 |
| MS.gene049366 | MS.gene82403 | 0.808183 | 3.51E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049366.t1 | MTR_3g094780 | 90.283 | 247 | 16 | 2 | 1 | 240 | 1 | 246 | 1.61e-146 | 409 |
| MS.gene049366.t1 | MTR_3g094780 | 88.770 | 187 | 13 | 2 | 1 | 180 | 1 | 186 | 1.09e-111 | 318 |
| MS.gene049366.t1 | MTR_4g078130 | 49.167 | 120 | 59 | 1 | 68 | 187 | 90 | 207 | 8.58e-31 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049366.t1 | AT5G09995 | 54.497 | 189 | 81 | 2 | 52 | 240 | 73 | 256 | 4.97e-65 | 202 |
| MS.gene049366.t1 | AT5G09995 | 54.497 | 189 | 82 | 2 | 52 | 240 | 73 | 257 | 6.73e-65 | 202 |
| MS.gene049366.t1 | AT5G09995 | 66.412 | 131 | 44 | 0 | 52 | 182 | 73 | 203 | 3.44e-54 | 173 |
| MS.gene049366.t1 | AT1G08530 | 47.581 | 124 | 63 | 1 | 64 | 187 | 94 | 215 | 4.33e-31 | 115 |
| MS.gene049366.t1 | AT1G08530 | 50.000 | 110 | 55 | 0 | 64 | 173 | 94 | 203 | 1.40e-29 | 111 |
| MS.gene049366.t1 | AT1G08530 | 54.878 | 82 | 37 | 0 | 64 | 145 | 94 | 175 | 1.15e-20 | 86.7 |
Find 80 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACTCCTTGGGTAATTTCT+TGG | 0.214369 | 3.1:-75636480 | None:intergenic |
| CGCGAGAGACGGAATTATTA+AGG | 0.254183 | 3.1:+75637102 | MS.gene049366:CDS |
| TTCTGCAATTCCCACTCTTC+TGG | 0.267213 | 3.1:+75635965 | MS.gene049366:CDS |
| ACCCGAGTCAGGCTCAGTTT+TGG | 0.293260 | 3.1:-75637050 | None:intergenic |
| CATCTCTTCCCCTCTCTCAT+TGG | 0.301487 | 3.1:+75635787 | MS.gene049366:CDS |
| ATGGCTGCAATTCGATTATC+TGG | 0.309283 | 3.1:+75636133 | MS.gene049366:CDS |
| GTTCTATTTAGCTTCGTTGC+AGG | 0.323824 | 3.1:+75637012 | MS.gene049366:intron |
| TCATCACTGGACGTGGAAAA+AGG | 0.330267 | 3.1:+75637185 | MS.gene049366:CDS |
| CGAATTGCAGCCATTGTATC+AGG | 0.330721 | 3.1:-75636124 | None:intergenic |
| ACCACTCAACTCAGTGATCT+TGG | 0.347530 | 3.1:+75636175 | MS.gene049366:CDS |
| GGAATCACTTGAAAAGCTTA+TGG | 0.380649 | 3.1:+75636081 | MS.gene049366:CDS |
| AACTTGAAGCTTGAAATTGC+AGG | 0.393308 | 3.1:-75635617 | None:intergenic |
| GAGGGATTGGGGAAGAGCGA+GGG | 0.394776 | 3.1:-75635721 | None:intergenic |
| ACCATGCCTTCTTCATCTTC+AGG | 0.400589 | 3.1:+75636556 | MS.gene049366:CDS |
| ACCGCAAGTGCACCCGAGTC+AGG | 0.412452 | 3.1:-75637061 | None:intergenic |
| GTTGTGGCGTAGAGAGGGAT+TGG | 0.442852 | 3.1:-75635734 | None:intergenic |
| TTCTTCAAGCTTAGACAAAT+CGG | 0.446605 | 3.1:-75635648 | None:intergenic |
| AGGGATTGGGGAAGAGCGAG+GGG | 0.456892 | 3.1:-75635720 | None:intergenic |
| AGAGGGATTGGGGAAGAGCG+AGG | 0.457366 | 3.1:-75635722 | None:intergenic |
| GTGGTTCGCTCGGCTGAGGA+GGG | 0.461041 | 3.1:+75636517 | MS.gene049366:CDS |
| TTGTGGCGTAGAGAGGGATT+GGG | 0.466139 | 3.1:-75635733 | None:intergenic |
| CGTGGTTCGCTCGGCTGAGG+AGG | 0.467600 | 3.1:+75636516 | MS.gene049366:CDS |
| TTTGCTCTCAAGTTCATCAC+TGG | 0.470008 | 3.1:+75637172 | MS.gene049366:CDS |
| CTCAAGTTCATCACTGGACG+TGG | 0.470643 | 3.1:+75637178 | MS.gene049366:CDS |
| GAGAAGAGTGAGGTGGCGTT+GGG | 0.471069 | 3.1:-75635817 | None:intergenic |
| TGTGGCGTAGAGAGGGATTG+GGG | 0.474365 | 3.1:-75635732 | None:intergenic |
| TCGCGTGGTTCGCTCGGCTG+AGG | 0.474505 | 3.1:+75636513 | MS.gene049366:CDS |
| AAGAAGGCATGGTGGTTAAA+CGG | 0.474640 | 3.1:-75636546 | None:intergenic |
| GCCCAAAACTGAGCCTGACT+CGG | 0.481716 | 3.1:+75637048 | MS.gene049366:CDS |
| ATCCACTCGCGTGGTTCGCT+CGG | 0.484762 | 3.1:+75636507 | MS.gene049366:CDS |
| GTACGTTGTGAATGAGTGTT+GGG | 0.488937 | 3.1:-75635678 | None:intergenic |
| CCACTCAACTCAGTGATCTT+GGG | 0.489821 | 3.1:+75636176 | MS.gene049366:CDS |
| GTACCACTACGGCGAGAGCT+TGG | 0.490321 | 3.1:-75635839 | None:intergenic |
| GGAGAAGAGTGAGGTGGCGT+TGG | 0.492814 | 3.1:-75635818 | None:intergenic |
| TTCTATTTAGCTTCGTTGCA+GGG | 0.496963 | 3.1:+75637013 | MS.gene049366:intron |
| GCGAAGGTTGTGGCGTAGAG+AGG | 0.502934 | 3.1:-75635740 | None:intergenic |
| AACAAGGCTTACCAGAAGAG+TGG | 0.509829 | 3.1:-75635976 | None:intergenic |
| TCGCATTACATCTCCACCGT+TGG | 0.514652 | 3.1:+75635759 | MS.gene049366:CDS |
| GCCTGACTCGGGTGCACTTG+CGG | 0.515689 | 3.1:+75637060 | MS.gene049366:CDS |
| GCGAGAGACGGAATTATTAA+GGG | 0.524578 | 3.1:+75637103 | MS.gene049366:CDS |
| CCCAAAACTGAGCCTGACTC+GGG | 0.536444 | 3.1:+75637049 | MS.gene049366:CDS |
| GGGGTTTAGTAGTAAAAGAG+AGG | 0.540631 | 3.1:-75635701 | None:intergenic |
| TGTGAATGAGTGTTGGGGAA+AGG | 0.547861 | 3.1:-75635672 | None:intergenic |
| TCCGCAAAAGGCGCGAGAGA+CGG | 0.551229 | 3.1:+75637091 | MS.gene049366:CDS |
| GCGGTGGCAAGATCCGCAAA+AGG | 0.551743 | 3.1:+75637079 | MS.gene049366:CDS |
| CGAAGGTTGTGGCGTAGAGA+GGG | 0.555024 | 3.1:-75635739 | None:intergenic |
| ACTTGAAGCTTGAAATTGCA+GGG | 0.555600 | 3.1:-75635616 | None:intergenic |
| TGCAATTCGATTATCTGGAA+TGG | 0.567276 | 3.1:+75636138 | MS.gene049366:CDS |
| AGAGGAACTTCCTGATACAA+TGG | 0.577089 | 3.1:+75636114 | MS.gene049366:CDS |
| ACCTGAAGATGAAGAAGGCA+TGG | 0.579013 | 3.1:-75636557 | None:intergenic |
| AGCCGAGCGAACCACGCGAG+TGG | 0.579367 | 3.1:-75636509 | None:intergenic |
| TGGTTCGCTCGGCTGAGGAG+GGG | 0.581712 | 3.1:+75636518 | MS.gene049366:CDS |
| GCTTATGGATACAGCAAGAG+AGG | 0.589075 | 3.1:+75636096 | MS.gene049366:CDS |
| ACAAGGCTTACCAGAAGAGT+GGG | 0.589685 | 3.1:-75635975 | None:intergenic |
| GGGTTTAGTAGTAAAAGAGA+GGG | 0.590751 | 3.1:-75635700 | None:intergenic |
| GGTACGTTGTGAATGAGTGT+TGG | 0.591363 | 3.1:-75635679 | None:intergenic |
| GGAGAAGTTCCAATGAGAGA+GGG | 0.600387 | 3.1:-75635796 | None:intergenic |
| AGGTAACCTGAAGATGAAGA+AGG | 0.601064 | 3.1:-75636562 | None:intergenic |
| TCTCCAAGCTCTCGCCGTAG+TGG | 0.605139 | 3.1:+75635836 | MS.gene049366:CDS |
| CAAAACTTGAGAATTGAGCA+AGG | 0.606164 | 3.1:-75637153 | None:intergenic |
| GGGAGAAGTTCCAATGAGAG+AGG | 0.608355 | 3.1:-75635797 | None:intergenic |
| GAGATGTAATGCGAAGGTTG+TGG | 0.614582 | 3.1:-75635750 | None:intergenic |
| TGACTCGGGTGCACTTGCGG+TGG | 0.623387 | 3.1:+75637063 | MS.gene049366:CDS |
| GAGAAGTTCCAATGAGAGAG+GGG | 0.631741 | 3.1:-75635795 | None:intergenic |
| TTCAAGCTTAGACAAATCGG+TGG | 0.634472 | 3.1:-75635645 | None:intergenic |
| CGAGAGCTTGGAGAAGAGTG+AGG | 0.641388 | 3.1:-75635827 | None:intergenic |
| GGGAAGAGATGAAGAACCAA+CGG | 0.642166 | 3.1:-75635775 | None:intergenic |
| CCCAAGATCACTGAGTTGAG+TGG | 0.642427 | 3.1:-75636176 | None:intergenic |
| CGTTGCAGGGAATCGAACAA+AGG | 0.649612 | 3.1:+75637026 | MS.gene049366:CDS |
| TGCAGCCAAGAAATTACCCA+AGG | 0.660341 | 3.1:+75636475 | MS.gene049366:intron |
| GAGCTTGGAGAAGAGTGAGG+TGG | 0.660991 | 3.1:-75635824 | None:intergenic |
| AAAACTTGAGAATTGAGCAA+GGG | 0.662486 | 3.1:-75637152 | None:intergenic |
| ATTCAGAGTAAGTACCACTA+CGG | 0.674339 | 3.1:-75635850 | None:intergenic |
| GAAGGCTTTCAAGAGAGCAG+CGG | 0.687355 | 3.1:+75636060 | MS.gene049366:intron |
| ACGGTGGAGATGTAATGCGA+AGG | 0.688216 | 3.1:-75635756 | None:intergenic |
| AGTTAAAAGATCCACTCGCG+TGG | 0.696128 | 3.1:+75636498 | MS.gene049366:CDS |
| AAGAGATGAAGAACCAACGG+TGG | 0.703717 | 3.1:-75635772 | None:intergenic |
| TGAAGATGAAGAAGGCATGG+TGG | 0.713708 | 3.1:-75636554 | None:intergenic |
| TACGTTGTGAATGAGTGTTG+GGG | 0.736539 | 3.1:-75635677 | None:intergenic |
| AGACAGCGATATGTACAACG+TGG | 0.808708 | 3.1:+75635934 | MS.gene049366:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTGCAAAAAATCAATTTG+AGG | - | chr3.1:75635908-75635927 | None:intergenic | 20.0% |
| !! | GTCATAAAATATTGTTCATT+TGG | + | chr3.1:75636990-75637009 | MS.gene049366:intron | 20.0% |
| !! | TAGTCGTAAATAATTATTTC+TGG | + | chr3.1:75636002-75636021 | MS.gene049366:intron | 20.0% |
| !! | TCTGATGTAATAAATAATGA+AGG | + | chr3.1:75636042-75636061 | MS.gene049366:intron | 20.0% |
| !!! | TATAATTTGAGATTGTAGAT+AGG | + | chr3.1:75636806-75636825 | MS.gene049366:intron | 20.0% |
| ! | CAACAAATTCAATTCAGTAA+CGG | - | chr3.1:75635882-75635901 | None:intergenic | 25.0% |
| ! | CAGCATTATAATAGTGTTAT+AGG | - | chr3.1:75636931-75636950 | None:intergenic | 25.0% |
| ! | TAGATTGATCATATAAAAGC+AGG | - | chr3.1:75636340-75636359 | None:intergenic | 25.0% |
| ! | TGACTAGAATGAATTCAAAA+TGG | - | chr3.1:75636211-75636230 | None:intergenic | 25.0% |
| !! | TAGAATGCAATTTAGAACTA+TGG | + | chr3.1:75636966-75636985 | MS.gene049366:intron | 25.0% |
| AAAACTTGAGAATTGAGCAA+GGG | - | chr3.1:75637155-75637174 | None:intergenic | 30.0% | |
| AAATTGCTACAATTACACTG+CGG | + | chr3.1:75636842-75636861 | MS.gene049366:intron | 30.0% | |
| AACACAAACTCATGATTAGT+AGG | - | chr3.1:75636585-75636604 | None:intergenic | 30.0% | |
| AACAGATACATGTTGGATTA+CGG | + | chr3.1:75636721-75636740 | MS.gene049366:intron | 30.0% | |
| ACACACATTGAAACAGTATT+TGG | + | chr3.1:75636437-75636456 | MS.gene049366:intron | 30.0% | |
| ATACTGTTTCAATGTGTGTT+TGG | - | chr3.1:75636436-75636455 | None:intergenic | 30.0% | |
| ATATGGTTCCTTCACATTAA+CGG | - | chr3.1:75636752-75636771 | None:intergenic | 30.0% | |
| TCTTACAACATATAGGTGTT+AGG | + | chr3.1:75636779-75636798 | MS.gene049366:intron | 30.0% | |
| TTATTTACGACTACCAAACA+AGG | - | chr3.1:75635995-75636014 | None:intergenic | 30.0% | |
| TTCTTCAAGCTTAGACAAAT+CGG | - | chr3.1:75635651-75635670 | None:intergenic | 30.0% | |
| !! | ATTCAATTCAGTAACGGATT+TGG | - | chr3.1:75635876-75635895 | None:intergenic | 30.0% |
| AACTTGAAGCTTGAAATTGC+AGG | - | chr3.1:75635620-75635639 | None:intergenic | 35.0% | |
| ACTTGAAGCTTGAAATTGCA+GGG | - | chr3.1:75635619-75635638 | None:intergenic | 35.0% | |
| ATTCAGAGTAAGTACCACTA+CGG | - | chr3.1:75635853-75635872 | None:intergenic | 35.0% | |
| CAAAACTTGAGAATTGAGCA+AGG | - | chr3.1:75637156-75637175 | None:intergenic | 35.0% | |
| GGAATCACTTGAAAAGCTTA+TGG | + | chr3.1:75636081-75636100 | MS.gene049366:CDS | 35.0% | |
| GGGTTTAGTAGTAAAAGAGA+GGG | - | chr3.1:75635703-75635722 | None:intergenic | 35.0% | |
| TAACTCCTTGGGTAATTTCT+TGG | - | chr3.1:75636483-75636502 | None:intergenic | 35.0% | |
| TCCAACATGTATCTGTTGTA+AGG | - | chr3.1:75636718-75636737 | None:intergenic | 35.0% | |
| TGCAATTCGATTATCTGGAA+TGG | + | chr3.1:75636138-75636157 | MS.gene049366:CDS | 35.0% | |
| ! | TTCTATTTAGCTTCGTTGCA+GGG | + | chr3.1:75637013-75637032 | MS.gene049366:intron | 35.0% |
| !! | AGTGGATCTTTTAACTCCTT+GGG | - | chr3.1:75636494-75636513 | None:intergenic | 35.0% |
| AGAGGAACTTCCTGATACAA+TGG | + | chr3.1:75636114-75636133 | MS.gene049366:CDS | 40.0% | |
| AGGTAACCTGAAGATGAAGA+AGG | - | chr3.1:75636565-75636584 | None:intergenic | 40.0% | |
| ATCGATCTAGTCATACGTGT+CGG | + | chr3.1:75636692-75636711 | MS.gene049366:intron | 40.0% | |
| ATGGCTGCAATTCGATTATC+TGG | + | chr3.1:75636133-75636152 | MS.gene049366:CDS | 40.0% | |
| GCCTTACAACAGATACATGT+TGG | + | chr3.1:75636714-75636733 | MS.gene049366:intron | 40.0% | |
| GCGAGAGACGGAATTATTAA+GGG | + | chr3.1:75637103-75637122 | MS.gene049366:CDS | 40.0% | |
| GGGGTTTAGTAGTAAAAGAG+AGG | - | chr3.1:75635704-75635723 | None:intergenic | 40.0% | |
| GTACGTTGTGAATGAGTGTT+GGG | - | chr3.1:75635681-75635700 | None:intergenic | 40.0% | |
| TTCAAGCTTAGACAAATCGG+TGG | - | chr3.1:75635648-75635667 | None:intergenic | 40.0% | |
| TTTGCTCTCAAGTTCATCAC+TGG | + | chr3.1:75637172-75637191 | MS.gene049366:CDS | 40.0% | |
| ! | AAGAAGGCATGGTGGTTAAA+CGG | - | chr3.1:75636549-75636568 | None:intergenic | 40.0% |
| ! | GTTCTATTTAGCTTCGTTGC+AGG | + | chr3.1:75637012-75637031 | MS.gene049366:intron | 40.0% |
| ! | TACGTTGTGAATGAGTGTTG+GGG | - | chr3.1:75635680-75635699 | None:intergenic | 40.0% |
| !! | ATTAAGCGTCGACACATACA+TGG | + | chr3.1:75636619-75636638 | MS.gene049366:intron | 40.0% |
| !! | GAGTGGATCTTTTAACTCCT+TGG | - | chr3.1:75636495-75636514 | None:intergenic | 40.0% |
| AACAAGGCTTACCAGAAGAG+TGG | - | chr3.1:75635979-75635998 | None:intergenic | 45.0% | |
| AAGAGATGAAGAACCAACGG+TGG | - | chr3.1:75635775-75635794 | None:intergenic | 45.0% | |
| ACAAGGCTTACCAGAAGAGT+GGG | - | chr3.1:75635978-75635997 | None:intergenic | 45.0% | |
| ACCACTCAACTCAGTGATCT+TGG | + | chr3.1:75636175-75636194 | MS.gene049366:CDS | 45.0% | |
| ACCATGCCTTCTTCATCTTC+AGG | + | chr3.1:75636556-75636575 | MS.gene049366:CDS | 45.0% | |
| ACCTGAAGATGAAGAAGGCA+TGG | - | chr3.1:75636560-75636579 | None:intergenic | 45.0% | |
| AGACAGCGATATGTACAACG+TGG | + | chr3.1:75635934-75635953 | MS.gene049366:intron | 45.0% | |
| AGTTAAAAGATCCACTCGCG+TGG | + | chr3.1:75636498-75636517 | MS.gene049366:CDS | 45.0% | |
| CCACTCAACTCAGTGATCTT+GGG | + | chr3.1:75636176-75636195 | MS.gene049366:CDS | 45.0% | |
| CGAATTGCAGCCATTGTATC+AGG | - | chr3.1:75636127-75636146 | None:intergenic | 45.0% | |
| CGCGAGAGACGGAATTATTA+AGG | + | chr3.1:75637102-75637121 | MS.gene049366:CDS | 45.0% | |
| GAGAAGTTCCAATGAGAGAG+GGG | - | chr3.1:75635798-75635817 | None:intergenic | 45.0% | |
| GAGATGTAATGCGAAGGTTG+TGG | - | chr3.1:75635753-75635772 | None:intergenic | 45.0% | |
| GCAACCGCAATTTGCAATTG+TGG | - | chr3.1:75636897-75636916 | None:intergenic | 45.0% | |
| GCAGCCACAATTGCAAATTG+CGG | + | chr3.1:75636890-75636909 | MS.gene049366:intron | 45.0% | |
| GCATTCTACAGTCGCAATTG+TGG | - | chr3.1:75636954-75636973 | None:intergenic | 45.0% | |
| GCTTATGGATACAGCAAGAG+AGG | + | chr3.1:75636096-75636115 | MS.gene049366:CDS | 45.0% | |
| GGAGAAGTTCCAATGAGAGA+GGG | - | chr3.1:75635799-75635818 | None:intergenic | 45.0% | |
| GGGAAGAGATGAAGAACCAA+CGG | - | chr3.1:75635778-75635797 | None:intergenic | 45.0% | |
| GGTACGTTGTGAATGAGTGT+TGG | - | chr3.1:75635682-75635701 | None:intergenic | 45.0% | |
| GTCGACACATACATGGATAC+TGG | + | chr3.1:75636626-75636645 | MS.gene049366:intron | 45.0% | |
| TCAACTCAGTGATCTTGGGT+GGG | + | chr3.1:75636180-75636199 | MS.gene049366:intron | 45.0% | |
| TCATCACTGGACGTGGAAAA+AGG | + | chr3.1:75637185-75637204 | MS.gene049366:CDS | 45.0% | |
| TGCAGCCAAGAAATTACCCA+AGG | + | chr3.1:75636475-75636494 | MS.gene049366:intron | 45.0% | |
| TGTGAAGGAACCATATGCGT+CGG | + | chr3.1:75636756-75636775 | MS.gene049366:intron | 45.0% | |
| TGTTGTAAGACCGACGCATA+TGG | - | chr3.1:75636769-75636788 | None:intergenic | 45.0% | |
| TTCTGCAATTCCCACTCTTC+TGG | + | chr3.1:75635965-75635984 | MS.gene049366:CDS | 45.0% | |
| ! | GCGTCGGTCTTACAACATAT+AGG | + | chr3.1:75636772-75636791 | MS.gene049366:intron | 45.0% |
| ! | TGAAGATGAAGAAGGCATGG+TGG | - | chr3.1:75636557-75636576 | None:intergenic | 45.0% |
| !! | CTCTTCTGGTAAGCCTTGTT+TGG | + | chr3.1:75635979-75635998 | MS.gene049366:intron | 45.0% |
| !! | TGTGAATGAGTGTTGGGGAA+AGG | - | chr3.1:75635675-75635694 | None:intergenic | 45.0% |
| ACGGTGGAGATGTAATGCGA+AGG | - | chr3.1:75635759-75635778 | None:intergenic | 50.0% | |
| CATCTCTTCCCCTCTCTCAT+TGG | + | chr3.1:75635787-75635806 | MS.gene049366:CDS | 50.0% | |
| CGGACAAGCCGTTAATGTGA+AGG | + | chr3.1:75636741-75636760 | MS.gene049366:intron | 50.0% | |
| CGTTGCAGGGAATCGAACAA+AGG | + | chr3.1:75637026-75637045 | MS.gene049366:CDS | 50.0% | |
| CTCAACTCAGTGATCTTGGG+TGG | + | chr3.1:75636179-75636198 | MS.gene049366:intron | 50.0% | |
| CTCAAGTTCATCACTGGACG+TGG | + | chr3.1:75637178-75637197 | MS.gene049366:CDS | 50.0% | |
| GAAGGCTTTCAAGAGAGCAG+CGG | + | chr3.1:75636060-75636079 | MS.gene049366:intron | 50.0% | |
| GGGAGAAGTTCCAATGAGAG+AGG | - | chr3.1:75635800-75635819 | None:intergenic | 50.0% | |
| TCGCATTACATCTCCACCGT+TGG | + | chr3.1:75635759-75635778 | MS.gene049366:CDS | 50.0% | |
| TTGTGGCGTAGAGAGGGATT+GGG | - | chr3.1:75635736-75635755 | None:intergenic | 50.0% | |
| ! | CCCAAGATCACTGAGTTGAG+TGG | - | chr3.1:75636179-75636198 | None:intergenic | 50.0% |
| CCCAAAACTGAGCCTGACTC+GGG | + | chr3.1:75637049-75637068 | MS.gene049366:CDS | 55.0% | |
| CGAAGGTTGTGGCGTAGAGA+GGG | - | chr3.1:75635742-75635761 | None:intergenic | 55.0% | |
| CGAGAGCTTGGAGAAGAGTG+AGG | - | chr3.1:75635830-75635849 | None:intergenic | 55.0% | |
| GAGAAGAGTGAGGTGGCGTT+GGG | - | chr3.1:75635820-75635839 | None:intergenic | 55.0% | |
| GAGCTTGGAGAAGAGTGAGG+TGG | - | chr3.1:75635827-75635846 | None:intergenic | 55.0% | |
| GCCCAAAACTGAGCCTGACT+CGG | + | chr3.1:75637048-75637067 | MS.gene049366:CDS | 55.0% | |
| GTTGTGGCGTAGAGAGGGAT+TGG | - | chr3.1:75635737-75635756 | None:intergenic | 55.0% | |
| TGTGGCGTAGAGAGGGATTG+GGG | - | chr3.1:75635735-75635754 | None:intergenic | 55.0% | |
| ! | ACCCGAGTCAGGCTCAGTTT+TGG | - | chr3.1:75637053-75637072 | None:intergenic | 55.0% |
| ! | CCCGAGTCAGGCTCAGTTTT+GGG | - | chr3.1:75637052-75637071 | None:intergenic | 55.0% |
| AGAGGGATTGGGGAAGAGCG+AGG | - | chr3.1:75635725-75635744 | None:intergenic | 60.0% | |
| AGGGATTGGGGAAGAGCGAG+GGG | - | chr3.1:75635723-75635742 | None:intergenic | 60.0% | |
| ATCCACTCGCGTGGTTCGCT+CGG | + | chr3.1:75636507-75636526 | MS.gene049366:CDS | 60.0% | |
| GAGGGATTGGGGAAGAGCGA+GGG | - | chr3.1:75635724-75635743 | None:intergenic | 60.0% | |
| GCGAAGGTTGTGGCGTAGAG+AGG | - | chr3.1:75635743-75635762 | None:intergenic | 60.0% | |
| GCGGTGGCAAGATCCGCAAA+AGG | + | chr3.1:75637079-75637098 | MS.gene049366:CDS | 60.0% | |
| GGAGAAGAGTGAGGTGGCGT+TGG | - | chr3.1:75635821-75635840 | None:intergenic | 60.0% | |
| GTACCACTACGGCGAGAGCT+TGG | - | chr3.1:75635842-75635861 | None:intergenic | 60.0% | |
| TCTCCAAGCTCTCGCCGTAG+TGG | + | chr3.1:75635836-75635855 | MS.gene049366:CDS | 60.0% | |
| ! | TCCGCAAAAGGCGCGAGAGA+CGG | + | chr3.1:75637091-75637110 | MS.gene049366:CDS | 60.0% |
| ! | TCCGTCTCTCGCGCCTTTTG+CGG | - | chr3.1:75637095-75637114 | None:intergenic | 60.0% |
| ACCGCAAGTGCACCCGAGTC+AGG | - | chr3.1:75637064-75637083 | None:intergenic | 65.0% | |
| GTGGTTCGCTCGGCTGAGGA+GGG | + | chr3.1:75636517-75636536 | MS.gene049366:CDS | 65.0% | |
| TGGTTCGCTCGGCTGAGGAG+GGG | + | chr3.1:75636518-75636537 | MS.gene049366:CDS | 65.0% | |
| ! | TGACTCGGGTGCACTTGCGG+TGG | + | chr3.1:75637063-75637082 | MS.gene049366:CDS | 65.0% |
| !! | GCCTGACTCGGGTGCACTTG+CGG | + | chr3.1:75637060-75637079 | MS.gene049366:CDS | 65.0% |
| AGCCGAGCGAACCACGCGAG+TGG | - | chr3.1:75636512-75636531 | None:intergenic | 70.0% | |
| CGTGGTTCGCTCGGCTGAGG+AGG | + | chr3.1:75636516-75636535 | MS.gene049366:CDS | 70.0% | |
| TCGCGTGGTTCGCTCGGCTG+AGG | + | chr3.1:75636513-75636532 | MS.gene049366:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 75635606 | 75637210 | 75635606 | ID=MS.gene049366 |
| chr3.1 | mRNA | 75635606 | 75637210 | 75635606 | ID=MS.gene049366.t1;Parent=MS.gene049366 |
| chr3.1 | exon | 75635606 | 75635857 | 75635606 | ID=MS.gene049366.t1.exon1;Parent=MS.gene049366.t1 |
| chr3.1 | CDS | 75635606 | 75635857 | 75635606 | ID=cds.MS.gene049366.t1;Parent=MS.gene049366.t1 |
| chr3.1 | exon | 75635936 | 75635986 | 75635936 | ID=MS.gene049366.t1.exon2;Parent=MS.gene049366.t1 |
| chr3.1 | CDS | 75635936 | 75635986 | 75635936 | ID=cds.MS.gene049366.t1;Parent=MS.gene049366.t1 |
| chr3.1 | exon | 75636064 | 75636197 | 75636064 | ID=MS.gene049366.t1.exon3;Parent=MS.gene049366.t1 |
| chr3.1 | CDS | 75636064 | 75636197 | 75636064 | ID=cds.MS.gene049366.t1;Parent=MS.gene049366.t1 |
| chr3.1 | exon | 75636480 | 75636577 | 75636480 | ID=MS.gene049366.t1.exon4;Parent=MS.gene049366.t1 |
| chr3.1 | CDS | 75636480 | 75636577 | 75636480 | ID=cds.MS.gene049366.t1;Parent=MS.gene049366.t1 |
| chr3.1 | exon | 75637023 | 75637210 | 75637023 | ID=MS.gene049366.t1.exon5;Parent=MS.gene049366.t1 |
| chr3.1 | CDS | 75637023 | 75637210 | 75637023 | ID=cds.MS.gene049366.t1;Parent=MS.gene049366.t1 |
| Gene Sequence |
| Protein sequence |
