Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065051.t1 | XP_013470282.1 | 94.4 | 1168 | 55 | 1 | 1 | 1168 | 1 | 1158 | 0.00E+00 | 2054.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065051.t1 | A0A072W234 | 94.4 | 1168 | 55 | 1 | 1 | 1168 | 1 | 1158 | 0.0e+00 | 2054.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene051433 | MS.gene065051 | 0.81046 | 1.14E-50 | -1.69E-46 |
MS.gene054662 | MS.gene065051 | 0.80713 | 5.88E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065051.t1 | MTR_1g112190 | 95.120 | 1168 | 47 | 1 | 1 | 1168 | 1 | 1158 | 0.0 | 2234 |
MS.gene065051.t1 | MTR_1g112190 | 95.034 | 1168 | 47 | 2 | 1 | 1168 | 1 | 1157 | 0.0 | 2229 |
MS.gene065051.t1 | MTR_4g053240 | 31.326 | 1229 | 649 | 40 | 81 | 1165 | 38 | 1215 | 3.55e-111 | 376 |
MS.gene065051.t1 | MTR_4g053240 | 31.054 | 1243 | 647 | 41 | 81 | 1165 | 38 | 1228 | 1.30e-109 | 372 |
MS.gene065051.t1 | MTR_4g053240 | 30.616 | 1251 | 644 | 44 | 81 | 1165 | 38 | 1230 | 1.88e-103 | 355 |
MS.gene065051.t1 | MTR_4g053240 | 30.658 | 1246 | 650 | 44 | 81 | 1165 | 90 | 1282 | 9.77e-103 | 353 |
MS.gene065051.t1 | MTR_2g040470 | 30.559 | 769 | 402 | 26 | 473 | 1165 | 554 | 1266 | 5.23e-65 | 241 |
MS.gene065051.t1 | MTR_2g040470 | 30.429 | 769 | 404 | 25 | 473 | 1165 | 554 | 1267 | 6.49e-65 | 241 |
MS.gene065051.t1 | MTR_4g125820 | 28.096 | 961 | 496 | 32 | 331 | 1165 | 413 | 1304 | 1.44e-52 | 202 |
MS.gene065051.t1 | MTR_2g040470 | 29.216 | 510 | 268 | 14 | 473 | 929 | 554 | 1023 | 2.63e-40 | 162 |
MS.gene065051.t1 | MTR_4g125820 | 27.273 | 682 | 351 | 22 | 331 | 923 | 413 | 1038 | 5.03e-35 | 145 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene065051.t1 | AT2G19390 | 26.777 | 1266 | 633 | 51 | 70 | 1165 | 64 | 1205 | 1.02e-57 | 218 |
MS.gene065051.t1 | AT2G19390 | 26.777 | 1266 | 633 | 51 | 70 | 1165 | 64 | 1205 | 1.02e-57 | 218 |
MS.gene065051.t1 | AT4G29790 | 26.573 | 1287 | 681 | 52 | 34 | 1165 | 28 | 1205 | 1.07e-52 | 202 |
MS.gene065051.t1 | AT5G22450 | 32.908 | 392 | 182 | 11 | 785 | 1168 | 835 | 1153 | 7.85e-43 | 171 |
MS.gene065051.t1 | AT5G22450 | 33.110 | 447 | 216 | 16 | 328 | 747 | 333 | 723 | 9.24e-35 | 145 |
MS.gene065051.t1 | AT5G22450 | 30.682 | 264 | 175 | 5 | 50 | 311 | 4 | 261 | 8.75e-18 | 90.1 |
MS.gene065051.t1 | AT5G22450 | 32.908 | 392 | 182 | 11 | 785 | 1168 | 835 | 1153 | 7.85e-43 | 171 |
MS.gene065051.t1 | AT5G22450 | 33.110 | 447 | 216 | 16 | 328 | 747 | 333 | 723 | 9.24e-35 | 145 |
MS.gene065051.t1 | AT5G22450 | 30.682 | 264 | 175 | 5 | 50 | 311 | 4 | 261 | 8.75e-18 | 90.1 |
MS.gene065051.t1 | AT5G22450 | 32.908 | 392 | 182 | 11 | 785 | 1168 | 835 | 1153 | 7.85e-43 | 171 |
MS.gene065051.t1 | AT5G22450 | 33.110 | 447 | 216 | 16 | 328 | 747 | 333 | 723 | 9.24e-35 | 145 |
MS.gene065051.t1 | AT5G22450 | 30.682 | 264 | 175 | 5 | 50 | 311 | 4 | 261 | 8.75e-18 | 90.1 |
Find 289 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGTCCTGCTGTTGTTAAAT+TGG | 0.193168 | 1.2:-82993661 | None:intergenic |
GACAGTCAGACGTTTGTTTC+TGG | 0.207012 | 1.2:+82986172 | MS.gene065051:CDS |
TCATTCTGAAATTGATTCTT+TGG | 0.208369 | 1.2:-82986820 | None:intergenic |
TACACAAATTGAACAAAGTT+TGG | 0.242640 | 1.2:+82986785 | MS.gene065051:CDS |
GGTCTCAAGGCCAGCTGCTT+TGG | 0.250182 | 1.2:+82996544 | MS.gene065051:CDS |
GTCTCAAGGCCAGCTGCTTT+GGG | 0.257683 | 1.2:+82996545 | MS.gene065051:CDS |
TTATTCAGAATGACATTCTT+AGG | 0.257932 | 1.2:-82986946 | None:intergenic |
AACTCTTGGCAATTCGTTCT+TGG | 0.259541 | 1.2:+82997083 | MS.gene065051:CDS |
AGAGGTAGCATTCCCTTTAC+AGG | 0.260163 | 1.2:-82993711 | None:intergenic |
TTGGCTGTTCTAGTTCATTT+TGG | 0.265840 | 1.2:+82990735 | MS.gene065051:CDS |
TAGAAGTTTACCACTAGTTC+TGG | 0.282708 | 1.2:-82993791 | None:intergenic |
TCCCGTGTTTCTTCAATTGC+TGG | 0.282994 | 1.2:-82987669 | None:intergenic |
TGATTCTCCTTTGGAGGCTT+GGG | 0.284378 | 1.2:+82993628 | MS.gene065051:CDS |
CAGCAAGAATGTGCACTATC+AGG | 0.299539 | 1.2:+82996728 | MS.gene065051:CDS |
CTCCAAGGCTTTGAGTGTTT+CGG | 0.312802 | 1.2:-82988951 | None:intergenic |
AAATGGTGAAAGTAAATTAA+AGG | 0.330480 | 1.2:+82989306 | MS.gene065051:CDS |
TTAGGCCTGCTCTTTAATCT+TGG | 0.338568 | 1.2:-82986928 | None:intergenic |
TTACATACAGCTGGCATTGC+TGG | 0.340371 | 1.2:-82990626 | None:intergenic |
GGCTTGTGGCTCTGGTCAAC+TGG | 0.340810 | 1.2:+82997317 | MS.gene065051:CDS |
AAGCTGACAGGAGCAAAATT+AGG | 0.342707 | 1.2:-82990770 | None:intergenic |
TTCTGGTGCTAATATGTTGC+AGG | 0.344256 | 1.2:+82986189 | MS.gene065051:CDS |
AATCAGTTGGCTTGTGGCTC+TGG | 0.348365 | 1.2:+82997309 | MS.gene065051:CDS |
ACTCTTGGCAATTCGTTCTT+GGG | 0.349689 | 1.2:+82997084 | MS.gene065051:CDS |
CAATAGCTTTGGACAGCCTT+TGG | 0.357348 | 1.2:+82987569 | MS.gene065051:CDS |
AAGTATACTGTTACTAGTTC+AGG | 0.360250 | 1.2:+82986286 | MS.gene065051:CDS |
CATGTAGGAACTTATATTAC+AGG | 0.360509 | 1.2:-82989377 | None:intergenic |
ATGATTCTCCTTTGGAGGCT+TGG | 0.360754 | 1.2:+82993627 | MS.gene065051:CDS |
GCACGAATGCAAGAGGCTTC+TGG | 0.361404 | 1.2:+82986427 | MS.gene065051:CDS |
TAGGTAAAGACCTGGATTCT+TGG | 0.362606 | 1.2:+82997466 | MS.gene065051:CDS |
GGAACTAGCGCTGCAAAGTA+TGG | 0.362981 | 1.2:+82996512 | MS.gene065051:CDS |
GTGTTTCGGAAGAATGAGAT+AGG | 0.365732 | 1.2:-82988937 | None:intergenic |
GACCCACTTATTGTTTCATT+TGG | 0.369307 | 1.2:-82986850 | None:intergenic |
CACGAGCCGGAGTTGCAAAT+AGG | 0.371672 | 1.2:-82996652 | None:intergenic |
TTTCATCACAATTTAAGAAC+GGG | 0.373777 | 1.2:-82989102 | None:intergenic |
GGCTCTGCTCGATCCATTGA+TGG | 0.377170 | 1.2:+82987726 | MS.gene065051:CDS |
CTTAACAGACGTGCCTGAAC+TGG | 0.379880 | 1.2:+82997425 | MS.gene065051:CDS |
GCCTAACCCATTGTGCCAAA+TGG | 0.380115 | 1.2:-82989033 | None:intergenic |
TTCGACATCTTCAGCTGATT+CGG | 0.380329 | 1.2:+82986216 | MS.gene065051:CDS |
GAATCTGGCGCTGGAGAAAA+TGG | 0.383496 | 1.2:+82989289 | MS.gene065051:CDS |
GAAGGCTTCATATTTCGAAT+TGG | 0.394462 | 1.2:-82989544 | None:intergenic |
GACCTGGATGCTGCCAAGAT+TGG | 0.397485 | 1.2:+82996982 | MS.gene065051:CDS |
TATGGAGGATAAACTCTTGC+TGG | 0.397570 | 1.2:+82993745 | MS.gene065051:CDS |
TGCCGGATGTTTGAGGAAAC+CGG | 0.399684 | 1.2:+82996593 | MS.gene065051:CDS |
CAGGTCCCGGGGACATCTCT+TGG | 0.401708 | 1.2:+82986319 | MS.gene065051:CDS |
ACACAAATTGAACAAAGTTT+GGG | 0.413212 | 1.2:+82986786 | MS.gene065051:CDS |
CACTTTGAGATAATCTAGTC+GGG | 0.413876 | 1.2:-82989264 | None:intergenic |
TAAATTAAAGGCGGAAGGAT+TGG | 0.414365 | 1.2:+82989318 | MS.gene065051:CDS |
TCCCGGTTTCCTCAAACATC+CGG | 0.414699 | 1.2:-82996595 | None:intergenic |
TGCTAGATGCCGGATGTTTG+AGG | 0.415315 | 1.2:+82996586 | MS.gene065051:CDS |
GAAATGCAAGTTCCATTAGA+AGG | 0.416262 | 1.2:+82989121 | MS.gene065051:CDS |
TTGATAGCACCCTTGGATAT+TGG | 0.416356 | 1.2:-82989199 | None:intergenic |
CTCCCGCATACCAGTGGATT+CGG | 0.421173 | 1.2:+82986384 | MS.gene065051:CDS |
ACGTACCCATTTGGCACAAT+GGG | 0.423952 | 1.2:+82989027 | MS.gene065051:CDS |
CCGACACTGTTTCCTGTAAA+GGG | 0.424460 | 1.2:+82993699 | MS.gene065051:CDS |
AGTAAAGCTCTTGCTCATCT+TGG | 0.424989 | 1.2:+82989707 | MS.gene065051:CDS |
TGCAAAGTATGGACTTTCTA+AGG | 0.426606 | 1.2:+82996523 | MS.gene065051:CDS |
GTCGGTGTTGCATCCGTGTT+CGG | 0.433094 | 1.2:-82993681 | None:intergenic |
TACATCAGCTATTGAGATAC+AGG | 0.434445 | 1.2:+82986978 | MS.gene065051:CDS |
TTCGAAAAGCACAATCTTCA+AGG | 0.434742 | 1.2:-82986348 | None:intergenic |
CCCATTTGGCACAATGGGTT+AGG | 0.435068 | 1.2:+82989032 | MS.gene065051:CDS |
AGATTGGACCAATACTGAAC+GGG | 0.436516 | 1.2:+82996998 | MS.gene065051:CDS |
CAATGGTAAACGTACCCATT+TGG | 0.437771 | 1.2:+82989018 | MS.gene065051:CDS |
TCCAACCTGGCAGGTAGGTC+AGG | 0.438054 | 1.2:+82990565 | MS.gene065051:intron |
GCTCATCTTGGAGATATTGC+GGG | 0.438055 | 1.2:+82989719 | MS.gene065051:CDS |
TCCAGGTCAGAGGGATGGTC+TGG | 0.438178 | 1.2:-82996967 | None:intergenic |
TGAGGCTCGTTCACATTTGA+AGG | 0.438569 | 1.2:-82988977 | None:intergenic |
TCGTTCTTGGGTGGAGCAAA+AGG | 0.439437 | 1.2:+82997096 | MS.gene065051:CDS |
TTCAAGGGGACTTTGTCAAA+TGG | 0.441047 | 1.2:+82986088 | MS.gene065051:CDS |
ACTTCTGTGGAGTCCAGTTC+AGG | 0.443329 | 1.2:-82997438 | None:intergenic |
GCTTCAAGGGCACCTCGAAC+TGG | 0.443422 | 1.2:+82988887 | MS.gene065051:CDS |
TTTGGACAGCCTTTGGCAAT+CGG | 0.443677 | 1.2:+82987576 | MS.gene065051:CDS |
AAGAGATGATTCTCCTTTGG+AGG | 0.446072 | 1.2:+82993622 | MS.gene065051:CDS |
GTTCAGTATTGGTCCAATCT+TGG | 0.446244 | 1.2:-82996995 | None:intergenic |
GAAGGGGAACAACCTTCTAA+TGG | 0.447725 | 1.2:-82989133 | None:intergenic |
GAAGGGCAAAACAATAGCTT+TGG | 0.448410 | 1.2:+82987558 | MS.gene065051:CDS |
TGAAAGAGATGATTCTCCTT+TGG | 0.449392 | 1.2:+82993619 | MS.gene065051:CDS |
TTCCGAAACACTCAAAGCCT+TGG | 0.449624 | 1.2:+82988949 | MS.gene065051:CDS |
CTAAAGCGAGCTAATGAGTC+TGG | 0.450921 | 1.2:+82987777 | MS.gene065051:CDS |
CTTGGATTTGCAAACTCTGT+AGG | 0.451805 | 1.2:-82986910 | None:intergenic |
GCTGGCATTGCTGGCAAAGT+TGG | 0.453233 | 1.2:-82990617 | None:intergenic |
GTCCATAGCAACTTGCTCAA+TGG | 0.453819 | 1.2:-82996198 | None:intergenic |
AAATGGGCAGAGGGGAAATT+CGG | 0.454592 | 1.2:+82986105 | MS.gene065051:CDS |
GAGAATTATGAGCAAGTGGC+AGG | 0.454793 | 1.2:-82996706 | None:intergenic |
TTCAAGCAGTAGAAGAAGGC+AGG | 0.455185 | 1.2:+82996043 | MS.gene065051:CDS |
CGAACTGGTGATTTGATAGC+TGG | 0.455232 | 1.2:+82988902 | MS.gene065051:CDS |
TCGCGAGGAATCGACTTTCA+AGG | 0.457431 | 1.2:+82986072 | MS.gene065051:CDS |
CCTAACCCATTGTGCCAAAT+GGG | 0.457881 | 1.2:-82989032 | None:intergenic |
GCAGAAGGAATGCTTCCAAC+AGG | 0.459208 | 1.2:+82995874 | MS.gene065051:CDS |
TTATCTCAAAGTGAAGAATC+TGG | 0.461189 | 1.2:+82989274 | MS.gene065051:CDS |
TATATTACAGGAATTATTTG+TGG | 0.461643 | 1.2:-82989365 | None:intergenic |
GCATCAGGTTAAAACAATAG+AGG | 0.462878 | 1.2:+82990904 | MS.gene065051:intron |
AGAACCAATTTAACAACAGC+AGG | 0.463060 | 1.2:+82993657 | MS.gene065051:CDS |
ACCGACACTGTTTCCTGTAA+AGG | 0.465916 | 1.2:+82993698 | MS.gene065051:CDS |
TCAGTAAGTGGGACAATCAA+TGG | 0.466217 | 1.2:+82989001 | MS.gene065051:CDS |
TTACCGGGGCATCACTTTGA+AGG | 0.467253 | 1.2:-82990958 | None:intergenic |
TTGAAACCTACATCAACTCT+TGG | 0.468880 | 1.2:+82997069 | MS.gene065051:CDS |
TGCAGGTTCATTTCCTTGCA+CGG | 0.469228 | 1.2:+82996924 | MS.gene065051:intron |
TTCAATTTCTCCGAATCCAC+TGG | 0.471800 | 1.2:-82986394 | None:intergenic |
TTGCACGGAGCAAAATGTCT+TGG | 0.471921 | 1.2:+82996939 | MS.gene065051:CDS |
ATCAGCTCAGTCTTCAAAGT+TGG | 0.472482 | 1.2:+82986243 | MS.gene065051:CDS |
TGAGGAACAAAGACACTTCT+CGG | 0.472612 | 1.2:+82997136 | MS.gene065051:CDS |
TTGTCGCAAAGTCCTCTTGA+GGG | 0.473433 | 1.2:+82993383 | MS.gene065051:CDS |
ACTCTTTGATACAATGGTGC+TGG | 0.474021 | 1.2:-82993527 | None:intergenic |
CTCCGAATCCACTGGTATGC+GGG | 0.476667 | 1.2:-82986386 | None:intergenic |
CTGCTTTGGGTTTCATGAAG+AGG | 0.478689 | 1.2:+82996558 | MS.gene065051:CDS |
CAAATCCAAGATTAAAGAGC+AGG | 0.478922 | 1.2:+82986923 | MS.gene065051:CDS |
ATCAAAAGAGCCACCCTCAA+TGG | 0.480773 | 1.2:+82993439 | MS.gene065051:CDS |
TGCACGGAGCAAAATGTCTT+GGG | 0.480816 | 1.2:+82996940 | MS.gene065051:CDS |
AGGCACGTCTGTTAAGTCCA+TGG | 0.484505 | 1.2:-82997418 | None:intergenic |
CTTGGCAATTCGTTCTTGGG+TGG | 0.488638 | 1.2:+82997087 | MS.gene065051:CDS |
AGGTGAGTTAAGACAGGTCC+CGG | 0.491255 | 1.2:+82986306 | MS.gene065051:CDS |
AGTAGAAGAAGGCAGGGAAA+TGG | 0.492162 | 1.2:+82996050 | MS.gene065051:CDS |
AGACAAAAGGCAAAGCTTCA+AGG | 0.493547 | 1.2:+82988873 | MS.gene065051:CDS |
TATTAATTCTGAAAATCAGT+TGG | 0.494790 | 1.2:+82997296 | MS.gene065051:CDS |
TCAAGGGGACTTTGTCAAAT+GGG | 0.495511 | 1.2:+82986089 | MS.gene065051:CDS |
TTGGATTTGCAAACTCTGTA+GGG | 0.495606 | 1.2:-82986909 | None:intergenic |
CGCGAGGAATCGACTTTCAA+GGG | 0.495893 | 1.2:+82986073 | MS.gene065051:CDS |
GGCACGTCTGTTAAGTCCAT+GGG | 0.502249 | 1.2:-82997417 | None:intergenic |
TGCTCATCTTGGAGATATTG+CGG | 0.502630 | 1.2:+82989718 | MS.gene065051:CDS |
AAATAGGATGTCTTTAAACA+TGG | 0.504700 | 1.2:-82996636 | None:intergenic |
TTCATGAAACCCAAAGCAGC+TGG | 0.504765 | 1.2:-82996554 | None:intergenic |
TAAAAGCCTGATCTTGCTGA+TGG | 0.504853 | 1.2:+82995815 | MS.gene065051:intron |
AACTTTGAAGACTGAGCTGA+TGG | 0.505026 | 1.2:-82986241 | None:intergenic |
GGTATTTATCTACAGACAAA+AGG | 0.505651 | 1.2:+82988860 | MS.gene065051:CDS |
AAATTCGGTAAATAGTGATT+CGG | 0.505843 | 1.2:+82986120 | MS.gene065051:CDS |
AGGATCTCTCGGCAAGTTGG+TGG | 0.506045 | 1.2:+82997269 | MS.gene065051:CDS |
AATGTTGTTGATAGCACCCT+TGG | 0.507366 | 1.2:-82989206 | None:intergenic |
ATCAAAGATGTTTGTCTCAA+GGG | 0.507612 | 1.2:+82990930 | MS.gene065051:CDS |
CAACCTCCATCAGCAAGATC+AGG | 0.507945 | 1.2:-82995821 | None:intergenic |
TTGCCAAATGAAACAATAAG+TGG | 0.508070 | 1.2:+82986847 | MS.gene065051:CDS |
GACTTTGTCAAATGGGCAGA+GGG | 0.508226 | 1.2:+82986096 | MS.gene065051:CDS |
TACCTCTGAGCAAACGTGTA+TGG | 0.509694 | 1.2:+82993727 | MS.gene065051:CDS |
GCTCTGCTCGATCCATTGAT+GGG | 0.510443 | 1.2:+82987727 | MS.gene065051:CDS |
GGCCATTGAGCAAGTTGCTA+TGG | 0.510640 | 1.2:+82996196 | MS.gene065051:CDS |
AAGCTGAACAAAGTAGAGAC+TGG | 0.511005 | 1.2:+82989418 | MS.gene065051:CDS |
GACAAAAGGCAAAGCTTCAA+GGG | 0.511520 | 1.2:+82988874 | MS.gene065051:CDS |
TTCCTCGCGACTAGCTGTGC+TGG | 0.511869 | 1.2:-82986059 | None:intergenic |
CTTATTCAAGCAGTAGAAGA+AGG | 0.514559 | 1.2:+82996039 | MS.gene065051:CDS |
TTGAATAATAGTTTGATCAA+CGG | 0.516324 | 1.2:-82995849 | None:intergenic |
TGTTTCGGAAGAATGAGATA+GGG | 0.517088 | 1.2:-82988936 | None:intergenic |
CTGCCTCTGTCTCCCTCAAG+AGG | 0.518984 | 1.2:-82993395 | None:intergenic |
TTTACCTACACCTACTTCTG+TGG | 0.520097 | 1.2:-82997451 | None:intergenic |
ATAGCACCCTTGGATATTGG+TGG | 0.520217 | 1.2:-82989196 | None:intergenic |
ATTGTCCCACTTACTGAATG+AGG | 0.521792 | 1.2:-82988995 | None:intergenic |
AACGAGCCTCATTCAGTAAG+TGG | 0.522312 | 1.2:+82988989 | MS.gene065051:CDS |
TATGGACAAACTTGTTGAGT+TGG | 0.522623 | 1.2:+82996214 | MS.gene065051:CDS |
CTATTCTTTCCGATTGCCAA+AGG | 0.523542 | 1.2:-82987585 | None:intergenic |
TCACTTTGAGATAATCTAGT+CGG | 0.524689 | 1.2:-82989265 | None:intergenic |
AACGTACCCATTTGGCACAA+TGG | 0.526428 | 1.2:+82989026 | MS.gene065051:CDS |
CACATTTGAAGGTTGCTCCA+AGG | 0.531123 | 1.2:-82988966 | None:intergenic |
GAAGGATTGGACAGAAGCAA+AGG | 0.531529 | 1.2:+82989331 | MS.gene065051:CDS |
GTCCAATCTTGGCAGCATCC+AGG | 0.532965 | 1.2:-82996984 | None:intergenic |
CTGCGGATAATAGTTCTTCA+CGG | 0.534224 | 1.2:-82990594 | None:intergenic |
TCTGAAAATCAGTTGGCTTG+TGG | 0.534672 | 1.2:+82997303 | MS.gene065051:CDS |
CCTGTGTTACCTCAAACCTA+TGG | 0.536754 | 1.2:-82987817 | None:intergenic |
ATCAACCGTGTCAACCATTG+AGG | 0.538086 | 1.2:-82993453 | None:intergenic |
TGCTGAGAATTATGAGCAAG+TGG | 0.538433 | 1.2:-82996710 | None:intergenic |
CTACATGTCAGTGACAGAAA+AGG | 0.539919 | 1.2:+82989393 | MS.gene065051:CDS |
GTTCTAGTATCAACTTCAGA+AGG | 0.540712 | 1.2:-82989151 | None:intergenic |
CAAAGTGAAGAATCTGGCGC+TGG | 0.540817 | 1.2:+82989280 | MS.gene065051:CDS |
AAGGATTGGACAGAAGCAAA+GGG | 0.541925 | 1.2:+82989332 | MS.gene065051:CDS |
CTTGTGATGCCATAGGTTTG+AGG | 0.543178 | 1.2:+82987808 | MS.gene065051:CDS |
TCAAGCAGTAGAAGAAGGCA+GGG | 0.543470 | 1.2:+82996044 | MS.gene065051:CDS |
AGACATCCTATTTGCAACTC+CGG | 0.544450 | 1.2:+82996646 | MS.gene065051:CDS |
AACTATTATTCAATTGCAGA+AGG | 0.545686 | 1.2:+82995859 | MS.gene065051:CDS |
TCCAGACCATCCCTCTGACC+TGG | 0.546662 | 1.2:+82996966 | MS.gene065051:CDS |
GTGCAGTCTTGTGATGCCAT+AGG | 0.548176 | 1.2:+82987801 | MS.gene065051:CDS |
GAATTGCCAAGAGTTGATGT+AGG | 0.549037 | 1.2:-82997075 | None:intergenic |
ACGAATTCTACTACAACTAG+TGG | 0.549368 | 1.2:+82989172 | MS.gene065051:CDS |
AGAAAACCTTCCATGTGCAC+TGG | 0.549511 | 1.2:+82987705 | MS.gene065051:CDS |
GATCAAAGATGTTTGTCTCA+AGG | 0.549537 | 1.2:+82990929 | MS.gene065051:CDS |
TAGTTCAGGTGAGTTAAGAC+AGG | 0.550045 | 1.2:+82986300 | MS.gene065051:CDS |
CAACACCGAGGATGGTGGTA+AGG | 0.553181 | 1.2:+82987611 | MS.gene065051:CDS |
ACAAACCTTACCACCATCCT+CGG | 0.553794 | 1.2:-82987616 | None:intergenic |
ATGGACTTTCTAAGGTCTCA+AGG | 0.553908 | 1.2:+82996531 | MS.gene065051:CDS |
TTGCCTTCAAAGTGATGCCC+CGG | 0.555945 | 1.2:+82990955 | MS.gene065051:CDS |
AATCATCCATAGGTATGTCT+AGG | 0.556030 | 1.2:-82997536 | None:intergenic |
CATGGGTTCCTCAGTTTCAA+CGG | 0.556209 | 1.2:-82997400 | None:intergenic |
CATAGTCTACTTGAAGCAGC+TGG | 0.556894 | 1.2:+82990799 | MS.gene065051:CDS |
GAAAGAGGAGTGGAAGAGTG+AGG | 0.556919 | 1.2:+82997118 | MS.gene065051:CDS |
CTAGCTGTGCTGGAACCAAA+CGG | 0.557811 | 1.2:-82986049 | None:intergenic |
ACCTATGGATGATTTGTCCA+TGG | 0.558680 | 1.2:+82997545 | MS.gene065051:CDS |
AGAGGACTCTTGCTAGATGC+CGG | 0.560381 | 1.2:+82996576 | MS.gene065051:CDS |
GAAAGTAAATTAAAGGCGGA+AGG | 0.560796 | 1.2:+82989313 | MS.gene065051:CDS |
AAGAGGCTTCTGGCAAGTCT+AGG | 0.560990 | 1.2:+82986437 | MS.gene065051:CDS |
TGTTTCCAAGAGATGTCCCC+GGG | 0.561992 | 1.2:-82986324 | None:intergenic |
ATTTCATCACAATTTAAGAA+CGG | 0.562207 | 1.2:-82989103 | None:intergenic |
GCTCGATCCATTGATGGGGA+AGG | 0.562995 | 1.2:+82987732 | MS.gene065051:CDS |
GAACTGGACTCCACAGAAGT+AGG | 0.565988 | 1.2:+82997441 | MS.gene065051:CDS |
AGAAGGATCTCTCGGCAAGT+TGG | 0.566379 | 1.2:+82997266 | MS.gene065051:CDS |
AATAGGATGTCTTTAAACAT+GGG | 0.566852 | 1.2:-82996635 | None:intergenic |
GTTGGCTTATAAGAAGAAGC+TGG | 0.567275 | 1.2:+82996232 | MS.gene065051:CDS |
TCGAGCAGAGCCAGTGCACA+TGG | 0.568733 | 1.2:-82987715 | None:intergenic |
GTATCTCAATAGCTGATGTA+CGG | 0.569687 | 1.2:-82986975 | None:intergenic |
ACAAGATGATGAGGTTGCGG+TGG | 0.570723 | 1.2:+82997512 | MS.gene065051:CDS |
GGAGCAAAAGGAAAGAGGAG+TGG | 0.571632 | 1.2:+82997108 | MS.gene065051:CDS |
AATAGAGACAACACCGAGGA+TGG | 0.572865 | 1.2:+82987603 | MS.gene065051:CDS |
AGAAGAAGTGCTACTTGATG+AGG | 0.574275 | 1.2:+82997029 | MS.gene065051:CDS |
ACTATGACATCCAAGCTGAC+AGG | 0.574722 | 1.2:-82990782 | None:intergenic |
AAAGTTGGGTCTGTATCTCA+TGG | 0.575701 | 1.2:+82997366 | MS.gene065051:CDS |
AACAACAGCAGGACCGAACA+CGG | 0.575807 | 1.2:+82993668 | MS.gene065051:CDS |
GTTGATAAATACTAGGCCGA+AGG | 0.575874 | 1.2:+82987540 | MS.gene065051:intron |
GCCGGATGTTTGAGGAAACC+GGG | 0.576397 | 1.2:+82996594 | MS.gene065051:CDS |
CAATGTCTAACCAAGAATCC+AGG | 0.577864 | 1.2:-82997476 | None:intergenic |
CAAATTGAACAAAGTTTGGG+AGG | 0.579124 | 1.2:+82986789 | MS.gene065051:CDS |
CTTCTTCTGAAAAGAAAGCA+AGG | 0.579313 | 1.2:+82989563 | MS.gene065051:CDS |
CGGAGAAGTTCTGTTCAAAG+AGG | 0.581970 | 1.2:+82997156 | MS.gene065051:CDS |
TAATATTTATAGGCGACTCG+TGG | 0.583866 | 1.2:+82996491 | MS.gene065051:intron |
ACTTCTGCAGAAGGATCTCT+CGG | 0.584321 | 1.2:+82997258 | MS.gene065051:CDS |
GGTGAGTTAAGACAGGTCCC+GGG | 0.586910 | 1.2:+82986307 | MS.gene065051:CDS |
CAAGATGATGAGGTTGCGGT+GGG | 0.587515 | 1.2:+82997513 | MS.gene065051:CDS |
CTGTTTCCAAGAGATGTCCC+CGG | 0.589943 | 1.2:-82986325 | None:intergenic |
GACAATACTCTTTGATACAA+TGG | 0.590727 | 1.2:-82993533 | None:intergenic |
ATTCAAAGCACGAATGCAAG+AGG | 0.591247 | 1.2:+82986420 | MS.gene065051:CDS |
CGGTAAATAGTGATTCGGAT+AGG | 0.592307 | 1.2:+82986125 | MS.gene065051:CDS |
AGTCCTCTTGAGGGAGACAG+AGG | 0.594083 | 1.2:+82993392 | MS.gene065051:CDS |
CCCTTTACAGGAAACAGTGT+CGG | 0.594759 | 1.2:-82993699 | None:intergenic |
ATTTCGAATTGGCTTTGTCG+AGG | 0.595555 | 1.2:-82989533 | None:intergenic |
TAGTGGACCACCAATATCCA+AGG | 0.596107 | 1.2:+82989189 | MS.gene065051:CDS |
GCAGAGCCAGTGCACATGGA+AGG | 0.596161 | 1.2:-82987711 | None:intergenic |
ACGGTTGATCAACATCGTGC+AGG | 0.596928 | 1.2:+82993467 | MS.gene065051:CDS |
CTTGGCAGCATCCAGGTCAG+AGG | 0.599394 | 1.2:-82996977 | None:intergenic |
TTCTAGTATCAACTTCAGAA+GGG | 0.600671 | 1.2:-82989150 | None:intergenic |
GGACTTTGTCAAATGGGCAG+AGG | 0.604970 | 1.2:+82986095 | MS.gene065051:CDS |
GCTATCAAATCACCAGTTCG+AGG | 0.605287 | 1.2:-82988899 | None:intergenic |
GATCAAACTGAAGAAACCGT+TGG | 0.606225 | 1.2:+82993572 | MS.gene065051:CDS |
TTGGCAGCATCCAGGTCAGA+GGG | 0.607725 | 1.2:-82996976 | None:intergenic |
CTCTGCTCGATCCATTGATG+GGG | 0.610826 | 1.2:+82987728 | MS.gene065051:CDS |
TCAAAATCCCAAGCCTCCAA+AGG | 0.611920 | 1.2:-82993635 | None:intergenic |
TGGGTGGAGCAAAAGGAAAG+AGG | 0.612196 | 1.2:+82997103 | MS.gene065051:CDS |
AGTAGGTGTAGGTAAAGACC+TGG | 0.612927 | 1.2:+82997458 | MS.gene065051:CDS |
TAGGTCTGCAAGAGTTCGTG+AGG | 0.614234 | 1.2:+82986144 | MS.gene065051:CDS |
TTGATAAATACTAGGCCGAA+GGG | 0.615660 | 1.2:+82987541 | MS.gene065051:intron |
CTCCATACACGTTTGCTCAG+AGG | 0.616772 | 1.2:-82993729 | None:intergenic |
TACCAGCAATTGAAGAAACA+CGG | 0.617762 | 1.2:+82987667 | MS.gene065051:CDS |
TCTGATCTCCCGCATACCAG+TGG | 0.619063 | 1.2:+82986378 | MS.gene065051:CDS |
TTGCTGGAGCTACAGAGTGT+CGG | 0.619163 | 1.2:+82993761 | MS.gene065051:CDS |
TTTACAAGATGATGAGGTTG+CGG | 0.621336 | 1.2:+82997509 | MS.gene065051:CDS |
TCAACCGTGTCAACCATTGA+GGG | 0.622838 | 1.2:-82993452 | None:intergenic |
CGGCATTTATCCAGAACTAG+TGG | 0.622881 | 1.2:+82993781 | MS.gene065051:CDS |
CAGCATCCAGGTCAGAGGGA+TGG | 0.623245 | 1.2:-82996972 | None:intergenic |
TTCATCACAATTTAAGAACG+GGG | 0.623424 | 1.2:-82989101 | None:intergenic |
TCGCACTCGAAGAGCAAATG+TGG | 0.623799 | 1.2:+82989075 | MS.gene065051:CDS |
AAGCCTGATCTTGCTGATGG+AGG | 0.624176 | 1.2:+82995818 | MS.gene065051:intron |
CAACTGTCTACTTCTGCAGA+AGG | 0.624476 | 1.2:+82997249 | MS.gene065051:CDS |
TTCTTGGTTAGACATTGATG+TGG | 0.624762 | 1.2:+82997482 | MS.gene065051:CDS |
TGTCTGTAGATAAATACCAC+CGG | 0.626571 | 1.2:-82988855 | None:intergenic |
TGAGCGTAAAATAAAACCAA+AGG | 0.626997 | 1.2:+82997209 | MS.gene065051:CDS |
TCTCCGAATCCACTGGTATG+CGG | 0.628198 | 1.2:-82986387 | None:intergenic |
ATTGCTGGCAAAGTTGGCTG+CGG | 0.628484 | 1.2:-82990611 | None:intergenic |
AAGATTGGACCAATACTGAA+CGG | 0.628744 | 1.2:+82996997 | MS.gene065051:CDS |
GGTGGGCCTAGACATACCTA+TGG | 0.629682 | 1.2:+82997530 | MS.gene065051:CDS |
GTGTTGAAGAGAAGATTCAA+AGG | 0.631741 | 1.2:+82987643 | MS.gene065051:CDS |
CTCTGAGCAAACGTGTATGG+AGG | 0.634585 | 1.2:+82993730 | MS.gene065051:CDS |
TGGTGAAAGTAAATTAAAGG+CGG | 0.634748 | 1.2:+82989309 | MS.gene065051:CDS |
TCTAGTATCAACTTCAGAAG+GGG | 0.634804 | 1.2:-82989149 | None:intergenic |
AACAAAGTAGAGACTGGAGA+TGG | 0.636547 | 1.2:+82989424 | MS.gene065051:CDS |
CGTTGAAACTGAGGAACCCA+TGG | 0.639492 | 1.2:+82997401 | MS.gene065051:CDS |
ACCAGCAATTGAAGAAACAC+GGG | 0.640027 | 1.2:+82987668 | MS.gene065051:CDS |
GATGGTGGTAAGGTTTGTGA+TGG | 0.640212 | 1.2:+82987621 | MS.gene065051:CDS |
TATGCGGGAGATCAGATTAG+CGG | 0.644517 | 1.2:-82986371 | None:intergenic |
TCTGGTGCTAATATGTTGCA+GGG | 0.644953 | 1.2:+82986190 | MS.gene065051:CDS |
ACTTTGAGATAATCTAGTCG+GGG | 0.645712 | 1.2:-82989263 | None:intergenic |
TTTGTCGCAAAGTCCTCTTG+AGG | 0.647090 | 1.2:+82993382 | MS.gene065051:CDS |
CATTAATCTTCACAGAACCA+TGG | 0.649855 | 1.2:-82997562 | None:intergenic |
ACGAGCCTCATTCAGTAAGT+GGG | 0.650960 | 1.2:+82988990 | MS.gene065051:CDS |
AGAGACAACACCGAGGATGG+TGG | 0.651254 | 1.2:+82987606 | MS.gene065051:CDS |
AGACTGGAGATGGTCTGCGT+AGG | 0.659070 | 1.2:+82989434 | MS.gene065051:CDS |
GCCACCCTCAATGGTTGACA+CGG | 0.659236 | 1.2:+82993448 | MS.gene065051:CDS |
GGTCTGCGTAGGCAGTGTCG+TGG | 0.659646 | 1.2:+82989445 | MS.gene065051:CDS |
TGCCAAATGAAACAATAAGT+GGG | 0.662194 | 1.2:+82986848 | MS.gene065051:CDS |
GTGAGTTAAGACAGGTCCCG+GGG | 0.666016 | 1.2:+82986308 | MS.gene065051:CDS |
ACCATGGACAAATCATCCAT+AGG | 0.666202 | 1.2:-82997546 | None:intergenic |
GGATGCTTTACAAGATGATG+AGG | 0.673649 | 1.2:+82997503 | MS.gene065051:CDS |
TTGGACCAATACTGAACGGG+GGG | 0.674966 | 1.2:+82997001 | MS.gene065051:CDS |
AAGGCAGGGAAATGGAGCCA+CGG | 0.677413 | 1.2:+82996058 | MS.gene065051:CDS |
ACCGTGTCAACCATTGAGGG+TGG | 0.678945 | 1.2:-82993449 | None:intergenic |
GTTCTTCTGCAAGTAACACA+AGG | 0.680779 | 1.2:+82997184 | MS.gene065051:CDS |
GATTGGACCAATACTGAACG+GGG | 0.681882 | 1.2:+82996999 | MS.gene065051:CDS |
GCGAGGAATCGACTTTCAAG+GGG | 0.684813 | 1.2:+82986074 | MS.gene065051:CDS |
TTCCAGCACAGCTAGTCGCG+AGG | 0.685484 | 1.2:+82986057 | MS.gene065051:CDS |
GAAGTGCTACTTGATGAGGT+TGG | 0.688688 | 1.2:+82997033 | MS.gene065051:CDS |
ACTTTGTCAAATGGGCAGAG+GGG | 0.689557 | 1.2:+82986097 | MS.gene065051:CDS |
AGTGGACCACCAATATCCAA+GGG | 0.702970 | 1.2:+82989190 | MS.gene065051:CDS |
GACTCCACAGAAGTAGGTGT+AGG | 0.713793 | 1.2:+82997447 | MS.gene065051:CDS |
AGGATTGGACAGAAGCAAAG+GGG | 0.717146 | 1.2:+82989333 | MS.gene065051:CDS |
ATTGGACCAATACTGAACGG+GGG | 0.718927 | 1.2:+82997000 | MS.gene065051:CDS |
AGGTCTGCAAGAGTTCGTGA+GGG | 0.721861 | 1.2:+82986145 | MS.gene065051:CDS |
AAAGAATAGAGACAACACCG+AGG | 0.821156 | 1.2:+82987599 | MS.gene065051:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 82986043 | 82997575 | 82986043 | ID=MS.gene065051 |
chr1.2 | mRNA | 82986043 | 82997575 | 82986043 | ID=MS.gene065051.t1;Parent=MS.gene065051 |
chr1.2 | exon | 82986043 | 82986458 | 82986043 | ID=MS.gene065051.t1.exon1;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82986043 | 82986458 | 82986043 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82986759 | 82986999 | 82986759 | ID=MS.gene065051.t1.exon2;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82986759 | 82986999 | 82986759 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82987555 | 82987829 | 82987555 | ID=MS.gene065051.t1.exon3;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82987555 | 82987829 | 82987555 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82988829 | 82989584 | 82988829 | ID=MS.gene065051.t1.exon4;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82988829 | 82989584 | 82988829 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82989685 | 82989740 | 82989685 | ID=MS.gene065051.t1.exon5;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82989685 | 82989740 | 82989685 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82990578 | 82990640 | 82990578 | ID=MS.gene065051.t1.exon6;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82990578 | 82990640 | 82990578 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82990732 | 82990820 | 82990732 | ID=MS.gene065051.t1.exon7;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82990732 | 82990820 | 82990732 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82990911 | 82990976 | 82990911 | ID=MS.gene065051.t1.exon8;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82990911 | 82990976 | 82990911 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82993356 | 82993802 | 82993356 | ID=MS.gene065051.t1.exon9;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82993356 | 82993802 | 82993356 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82995821 | 82995895 | 82995821 | ID=MS.gene065051.t1.exon10;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82995821 | 82995895 | 82995821 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82996009 | 82996079 | 82996009 | ID=MS.gene065051.t1.exon11;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82996009 | 82996079 | 82996009 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82996196 | 82996253 | 82996196 | ID=MS.gene065051.t1.exon12;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82996196 | 82996253 | 82996196 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82996503 | 82996749 | 82996503 | ID=MS.gene065051.t1.exon13;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82996503 | 82996749 | 82996503 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
chr1.2 | exon | 82996929 | 82997575 | 82996929 | ID=MS.gene065051.t1.exon14;Parent=MS.gene065051.t1 |
chr1.2 | CDS | 82996929 | 82997575 | 82996929 | ID=cds.MS.gene065051.t1;Parent=MS.gene065051.t1 |
Gene Sequence |
Protein sequence |