AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051433

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051433.t1 MTR_1g063060 100.000 390 0 0 1 390 19 408 0.0 805
MS.gene051433.t1 MTR_1g063060 100.000 390 0 0 1 390 1 390 0.0 805
MS.gene051433.t1 MTR_7g102120 94.103 390 23 0 1 390 1 390 0.0 740
MS.gene051433.t1 MTR_4g123810 88.601 386 44 0 2 387 4 389 0.0 696
MS.gene051433.t1 MTR_7g110310 86.788 386 51 0 2 387 3 388 0.0 693
MS.gene051433.t1 MTR_2g046710 88.083 386 46 0 2 387 4 389 0.0 692
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051433.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene051433.t1 AT2G36880 92.564 390 29 0 1 390 1 390 0.0 733
MS.gene051433.t1 AT3G17390 88.114 387 46 0 1 387 1 387 0.0 696
MS.gene051433.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene051433.t1 AT4G01850 87.597 387 48 0 1 387 1 387 0.0 692
MS.gene051433.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688
MS.gene051433.t1 AT1G02500 87.597 387 48 0 1 387 1 387 0.0 688

Find 116 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCCAGATAAGGATATTT+TGG 0.191529 1.1:-47661857 MS.gene051433:CDS
ACTGCTGCTTACGGGCATTT+TGG 0.206540 1.1:-47661745 MS.gene051433:CDS
AGCAAGAAGCCTGAGGAAAT+TGG 0.257775 1.1:-47662504 MS.gene051433:CDS
ACTAACATGGTTATGGTCTT+TGG 0.278992 1.1:-47662696 MS.gene051433:CDS
TGAACTCCTTGAGCAATATC+AGG 0.302469 1.1:+47662537 None:intergenic
GCCCGTAAGCAGCAGTCTTC+TGG 0.322457 1.1:+47661752 None:intergenic
TTTGTGGACACTTACAAAAC+TGG 0.330918 1.1:-47661883 MS.gene051433:CDS
TCACAAGAGGTGGCAAATTC+AGG 0.332737 1.1:-47661777 MS.gene051433:CDS
AAATAGTTCGGGACACTTGC+AGG 0.334020 1.1:-47662638 MS.gene051433:CDS
AGAACCAAAATATCCTTATC+TGG 0.337009 1.1:+47661853 None:intergenic
AGGATTGTGTGCACGCGAAT+AGG 0.355191 1.1:+47662285 None:intergenic
TATTGATACCTATGGTGGTT+GGG 0.358518 1.1:-47662073 MS.gene051433:CDS
CTCATAGTCCACCTTTGCCT+TGG 0.368509 1.1:+47662662 None:intergenic
GGAGTGGTGCTTACATTGTT+AGG 0.368655 1.1:-47661999 MS.gene051433:CDS
GGGACACTTGCAGGAGTATT+GGG 0.371873 1.1:-47662629 MS.gene051433:CDS
GTTGAATACAAGAATGATAA+TGG 0.375620 1.1:-47662318 MS.gene051433:CDS
ATCAATAATGATCTTCCTTC+CGG 0.379520 1.1:+47662089 None:intergenic
CATGTGCTTGCCACTAAAAT+TGG 0.379944 1.1:-47662414 MS.gene051433:CDS
CGGGACACTTGCAGGAGTAT+TGG 0.380004 1.1:-47662630 MS.gene051433:CDS
CATGGTGGAGGTGCCTTCTC+AGG 0.384431 1.1:-47662045 MS.gene051433:CDS
TTACAGATTCTGAGGTGAAT+AGG 0.390519 1.1:+47662826 None:intergenic
TGCTCGTCGTTGTATTGTGC+AGG 0.400285 1.1:-47661944 MS.gene051433:CDS
GTGCAGGTTTCTTATGCAAT+TGG 0.405905 1.1:-47661928 MS.gene051433:CDS
ACCAGAAGACTGCTGCTTAC+GGG 0.407668 1.1:-47661753 MS.gene051433:CDS
TCTTGTATTCAACGGTAACT+TGG 0.410805 1.1:+47662328 None:intergenic
TCAGGTAGGTTTGTGATTGG+TGG 0.413640 1.1:-47662135 MS.gene051433:CDS
GGTTGGGGTGCTCATGGTGG+AGG 0.416114 1.1:-47662057 MS.gene051433:CDS
GGATTGTGTGCACGCGAATA+GGG 0.416704 1.1:+47662286 None:intergenic
ACCTGGTCACAGATCTTGTC+GGG 0.417397 1.1:+47662792 None:intergenic
TTGTCGTCAAGGTATTTAGC+TGG 0.418579 1.1:+47662180 None:intergenic
CCTTCAGGTAGGTTTGTGAT+TGG 0.422961 1.1:-47662138 MS.gene051433:CDS
ATAAGACATGCCCATGGGTT+AGG 0.433400 1.1:-47662365 MS.gene051433:CDS
GGTGATCAAGGTCACATGTT+TGG 0.433876 1.1:-47662477 MS.gene051433:CDS
ACCATAACTCCCTCAAGCCT+TGG 0.434421 1.1:+47661675 None:intergenic
TATGGTGGTTGGGGTGCTCA+TGG 0.437298 1.1:-47662063 MS.gene051433:CDS
CTTTCTAACTTCAGTGAGCT+TGG 0.438150 1.1:+47662389 None:intergenic
GGTTGGATCCTTTCCTGAGA+AGG 0.441186 1.1:+47662032 None:intergenic
TGCTCAAGCCCAAGGCTTGA+GGG 0.445480 1.1:-47661684 None:intergenic
ATCTTCCATCTCAACCCTTC+AGG 0.447635 1.1:-47662153 MS.gene051433:CDS
ACAGTCTCCCATGTAAAATC+AGG 0.452392 1.1:+47661712 None:intergenic
CGTCGTGTTGAGTTGAAATG+AGG 0.453932 1.1:+47662265 None:intergenic
TCACCAGCTCCAATTTCCTC+AGG 0.463353 1.1:+47662495 None:intergenic
TGTGTGAGTGGCATTAGTTC+AGG 0.465165 1.1:+47662435 None:intergenic
CCACTCCTGTCCACCTTGGT+TGG 0.465451 1.1:+47662015 None:intergenic
TACCAGAAGACTGCTGCTTA+CGG 0.467085 1.1:-47661754 MS.gene051433:CDS
CATGGAGATGCGGGGCTCAC+CGG 0.468853 1.1:-47662108 MS.gene051433:CDS
GGACTATGAGAAAATAGTTC+GGG 0.469416 1.1:-47662649 MS.gene051433:CDS
CCATAACTCCCTCAAGCCTT+GGG 0.475898 1.1:+47661676 None:intergenic
GGTGGACCTCATGGAGATGC+GGG 0.478920 1.1:-47662117 MS.gene051433:CDS
TGGACTATGAGAAAATAGTT+CGG 0.480347 1.1:-47662650 MS.gene051433:CDS
GAAATTGGAGCTGGTGATCA+AGG 0.483468 1.1:-47662489 MS.gene051433:CDS
TGCCACCTCTTGTGAGGTCA+AGG 0.490427 1.1:+47661785 None:intergenic
AGGATCCAACCAAGGTGGAC+AGG 0.494928 1.1:-47662020 MS.gene051433:CDS
AGGTTGATAGCAATCATTCC+AGG 0.495973 1.1:+47661805 None:intergenic
TGCCATCCTTGATGCATGCT+TGG 0.499134 1.1:-47662763 MS.gene051433:CDS
AGGTATTTAGCTGGGACGAC+AGG 0.499951 1.1:+47662189 None:intergenic
AACTGGAAAGATTCCAGATA+AGG 0.500009 1.1:-47661866 MS.gene051433:CDS
GGGTTTGTGTCTGCTGATGT+TGG 0.504850 1.1:-47662609 MS.gene051433:CDS
TGCCCATGGGTTAGGCCTGA+TGG 0.510007 1.1:-47662357 MS.gene051433:CDS
CAAGGATGGCATCTGAAACC+TGG 0.510900 1.1:+47662775 None:intergenic
TTATTGATACCTATGGTGGT+TGG 0.512065 1.1:-47662074 MS.gene051433:CDS
AAGATCATTATTGATACCTA+TGG 0.514480 1.1:-47662081 MS.gene051433:CDS
CTTGTATTCAACGGTAACTT+GGG 0.524167 1.1:+47662329 None:intergenic
GTAACTTGGGTCTTACCATC+AGG 0.526446 1.1:+47662342 None:intergenic
ATTGATACCTATGGTGGTTG+GGG 0.527612 1.1:-47662072 MS.gene051433:CDS
ATGCTCAAGCCCAAGGCTTG+AGG 0.527948 1.1:-47661685 None:intergenic
ATTATCATTCTTGTATTCAA+CGG 0.531052 1.1:+47662320 None:intergenic
GATATTGCTCAAGGAGTTCA+CGG 0.536055 1.1:-47662534 MS.gene051433:CDS
CCCCGACAAGATCTGTGACC+AGG 0.538168 1.1:-47662793 MS.gene051433:CDS
TAGTTCAGGTGTTTCGTCAG+TGG 0.542460 1.1:+47662449 None:intergenic
TTTGTGATTGGTGGACCTCA+TGG 0.544583 1.1:-47662126 MS.gene051433:CDS
TACCATCAGGCCTAACCCAT+GGG 0.547526 1.1:+47662355 None:intergenic
TGTCGTCAAGGTATTTAGCT+GGG 0.547725 1.1:+47662181 None:intergenic
ACCTACCTGAAGGGTTGAGA+TGG 0.549506 1.1:+47662148 None:intergenic
TGGTGGACCTCATGGAGATG+CGG 0.558868 1.1:-47662118 MS.gene051433:CDS
GGTGGTTGGGGTGCTCATGG+TGG 0.563645 1.1:-47662060 MS.gene051433:CDS
TGAAGGGTTGAGATGGAAGA+TGG 0.563688 1.1:+47662155 None:intergenic
AACCTGGTCACAGATCTTGT+CGG 0.563707 1.1:+47662791 None:intergenic
AAGCCTGAGGAAATTGGAGC+TGG 0.569064 1.1:-47662498 MS.gene051433:CDS
AGCACCACTCCTGTCCACCT+TGG 0.571010 1.1:+47662011 None:intergenic
CTCCAAGCATGCATCAAGGA+TGG 0.575330 1.1:+47662761 None:intergenic
ATCATTATTGATACCTATGG+TGG 0.575435 1.1:-47662078 MS.gene051433:CDS
ATGAGCACCCCAACCACCAT+AGG 0.575628 1.1:+47662065 None:intergenic
CAAGAATGATAATGGAGCCA+TGG 0.577331 1.1:-47662310 MS.gene051433:CDS
GGAAGATGGTCTTGTCGTCA+AGG 0.577435 1.1:+47662169 None:intergenic
TTACCATCAGGCCTAACCCA+TGG 0.578836 1.1:+47662354 None:intergenic
TGTGAAGATGCTCAAGCCCA+AGG 0.581845 1.1:-47661692 MS.gene051433:CDS
GAGATGCGGGGCTCACCGGA+AGG 0.589190 1.1:-47662104 MS.gene051433:CDS
ACCTTCGTTTACAGATTCTG+AGG 0.589403 1.1:+47662818 None:intergenic
TGAAATCACAACCAAGGCAA+AGG 0.590046 1.1:-47662673 MS.gene051433:CDS
CCAATCACAAACCTACCTGA+AGG 0.592190 1.1:+47662138 None:intergenic
AACCTTGACCTCACAAGAGG+TGG 0.593643 1.1:-47661787 MS.gene051433:CDS
GGAGCAAGATAAAGAGAGCA+AGG 0.594380 1.1:-47662742 MS.gene051433:CDS
AATCACAACCAAGGCAAAGG+TGG 0.598400 1.1:-47662670 MS.gene051433:CDS
TGAATTTGCCACCTCTTGTG+AGG 0.598537 1.1:+47661779 None:intergenic
CAGAGCCCTGATATTGCTCA+AGG 0.602611 1.1:-47662543 MS.gene051433:CDS
CTTGCTCCAAGCATGCATCA+AGG 0.602878 1.1:+47662757 None:intergenic
GAACTCCTTGAGCAATATCA+GGG 0.613163 1.1:+47662538 None:intergenic
GAAAGAATAAGACATGCCCA+TGG 0.616428 1.1:-47662371 MS.gene051433:CDS
TGGAGGTGCCTTCTCAGGAA+AGG 0.621106 1.1:-47662040 MS.gene051433:CDS
CAATCACAAACCTACCTGAA+GGG 0.630070 1.1:+47662139 None:intergenic
ATCAACCTTGACCTCACAAG+AGG 0.632107 1.1:-47661790 MS.gene051433:CDS
AGATTCTGAGGTGAATAGGA+AGG 0.635764 1.1:+47662830 None:intergenic
TCCATCTCAACCCTTCAGGT+AGG 0.636963 1.1:-47662149 MS.gene051433:CDS
AAAGAATAAGACATGCCCAT+GGG 0.640830 1.1:-47662370 MS.gene051433:CDS
CCAACCAAGGTGGACAGGAG+TGG 0.650759 1.1:-47662015 MS.gene051433:CDS
ACCTCAGAATCTGTAAACGA+AGG 0.651225 1.1:-47662819 MS.gene051433:CDS
GTGGACCTCATGGAGATGCG+GGG 0.667986 1.1:-47662116 MS.gene051433:CDS
GTGGCAAGCACATGTGTGAG+TGG 0.669118 1.1:+47662423 None:intergenic
CTCAGGAAAGGATCCAACCA+AGG 0.675495 1.1:-47662028 MS.gene051433:CDS
CTTTGGTGAAATCACAACCA+AGG 0.678587 1.1:-47662679 MS.gene051433:CDS
TCACTTGAGCAAGAAGCCTG+AGG 0.682617 1.1:-47662511 MS.gene051433:CDS
GTGCACGCGAATAGGGACCA+TGG 0.688328 1.1:+47662293 None:intergenic
GTGAGCCCCGCATCTCCATG+AGG 0.689929 1.1:+47662111 None:intergenic
AGGAAAGGATCCAACCAAGG+TGG 0.705983 1.1:-47662025 MS.gene051433:CDS
CCTGGTCACAGATCTTGTCG+GGG 0.713673 1.1:+47662793 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATCATTCTTGTATTCAA+CGG + chr1.1:47662207-47662226 None:intergenic 20.0%
! AAGATCATTATTGATACCTA+TGG - chr1.1:47662443-47662462 MS.gene051433:CDS 25.0%
! GTTGAATACAAGAATGATAA+TGG - chr1.1:47662206-47662225 MS.gene051433:CDS 25.0%
! TACAAAAACTAACATGGTTA+TGG - chr1.1:47661821-47661840 MS.gene051433:CDS 25.0%
AGAACCAAAATATCCTTATC+TGG + chr1.1:47662674-47662693 None:intergenic 30.0%
ATCAATAATGATCTTCCTTC+CGG + chr1.1:47662438-47662457 None:intergenic 30.0%
ATCATTATTGATACCTATGG+TGG - chr1.1:47662446-47662465 MS.gene051433:CDS 30.0%
TGGACTATGAGAAAATAGTT+CGG - chr1.1:47661874-47661893 MS.gene051433:CDS 30.0%
! GATTCCAGATAAGGATATTT+TGG - chr1.1:47662667-47662686 MS.gene051433:CDS 30.0%
!!! AACCATGTTAGTTTTTGTAC+AGG + chr1.1:47661820-47661839 None:intergenic 30.0%
!!! GGATATTTTGGTTCTGATTA+AGG - chr1.1:47662679-47662698 MS.gene051433:CDS 30.0%
!!! TTAAGGAGAATTTTGACTTC+AGG - chr1.1:47662696-47662715 MS.gene051433:CDS 30.0%
AAAGAATAAGACATGCCCAT+GGG - chr1.1:47662154-47662173 MS.gene051433:CDS 35.0%
AACTGGAAAGATTCCAGATA+AGG - chr1.1:47662658-47662677 MS.gene051433:CDS 35.0%
ACTAACATGGTTATGGTCTT+TGG - chr1.1:47661828-47661847 MS.gene051433:CDS 35.0%
CTTGTATTCAACGGTAACTT+GGG + chr1.1:47662198-47662217 None:intergenic 35.0%
GACCTGTACAAAAACTAACA+TGG - chr1.1:47661815-47661834 MS.gene051433:CDS 35.0%
GGACTATGAGAAAATAGTTC+GGG - chr1.1:47661875-47661894 MS.gene051433:CDS 35.0%
TATTGATACCTATGGTGGTT+GGG - chr1.1:47662451-47662470 MS.gene051433:CDS 35.0%
TCTTGTATTCAACGGTAACT+TGG + chr1.1:47662199-47662218 None:intergenic 35.0%
TTATTGATACCTATGGTGGT+TGG - chr1.1:47662450-47662469 MS.gene051433:CDS 35.0%
TTTGTGGACACTTACAAAAC+TGG - chr1.1:47662641-47662660 MS.gene051433:CDS 35.0%
! TGACGATCCTGATTTTACAT+GGG - chr1.1:47662805-47662824 MS.gene051433:CDS 35.0%
!! TTACAGATTCTGAGGTGAAT+AGG + chr1.1:47661701-47661720 None:intergenic 35.0%
ACAAAAACAGAAAGTGGCTC+TGG + chr1.1:47662626-47662645 None:intergenic 40.0%
ACAGTCTCCCATGTAAAATC+AGG + chr1.1:47662815-47662834 None:intergenic 40.0%
ACCTCAGAATCTGTAAACGA+AGG - chr1.1:47661705-47661724 MS.gene051433:CDS 40.0%
ACCTTCGTTTACAGATTCTG+AGG + chr1.1:47661709-47661728 None:intergenic 40.0%
ATTGATACCTATGGTGGTTG+GGG - chr1.1:47662452-47662471 MS.gene051433:CDS 40.0%
CAATCACAAACCTACCTGAA+GGG + chr1.1:47662388-47662407 None:intergenic 40.0%
CATGTGCTTGCCACTAAAAT+TGG - chr1.1:47662110-47662129 MS.gene051433:CDS 40.0%
CTTTCTAACTTCAGTGAGCT+TGG + chr1.1:47662138-47662157 None:intergenic 40.0%
CTTTGGTGAAATCACAACCA+AGG - chr1.1:47661845-47661864 MS.gene051433:CDS 40.0%
GAAAGAATAAGACATGCCCA+TGG - chr1.1:47662153-47662172 MS.gene051433:CDS 40.0%
GAACTCCTTGAGCAATATCA+GGG + chr1.1:47661989-47662008 None:intergenic 40.0%
GATATTGCTCAAGGAGTTCA+CGG - chr1.1:47661990-47662009 MS.gene051433:CDS 40.0%
GTGCAGGTTTCTTATGCAAT+TGG - chr1.1:47662596-47662615 MS.gene051433:CDS 40.0%
GTGTCCACAAAAACAGAAAG+TGG + chr1.1:47662632-47662651 None:intergenic 40.0%
TGAAATCACAACCAAGGCAA+AGG - chr1.1:47661851-47661870 MS.gene051433:CDS 40.0%
TGAACTCCTTGAGCAATATC+AGG + chr1.1:47661990-47662009 None:intergenic 40.0%
! GTGACGATCCTGATTTTACA+TGG - chr1.1:47662804-47662823 MS.gene051433:CDS 40.0%
! TGTCGTCAAGGTATTTAGCT+GGG + chr1.1:47662346-47662365 None:intergenic 40.0%
! TTGTCGTCAAGGTATTTAGC+TGG + chr1.1:47662347-47662366 None:intergenic 40.0%
!! AGATTCTGAGGTGAATAGGA+AGG + chr1.1:47661697-47661716 None:intergenic 40.0%
!! AGGTTGATAGCAATCATTCC+AGG + chr1.1:47662722-47662741 None:intergenic 40.0%
!! CAAAAAGTGTTGTCGCTTCA+GGG - chr1.1:47662555-47662574 MS.gene051433:CDS 40.0%
!! CAAGAATGATAATGGAGCCA+TGG - chr1.1:47662214-47662233 MS.gene051433:CDS 40.0%
!!! AGAGCCACTTTCTGTTTTTG+TGG - chr1.1:47662625-47662644 MS.gene051433:CDS 40.0%
AAATAGTTCGGGACACTTGC+AGG - chr1.1:47661886-47661905 MS.gene051433:CDS 45.0%
AACCTGGTCACAGATCTTGT+CGG + chr1.1:47661736-47661755 None:intergenic 45.0%
AATCACAACCAAGGCAAAGG+TGG - chr1.1:47661854-47661873 MS.gene051433:CDS 45.0%
AGCAAGAAGCCTGAGGAAAT+TGG - chr1.1:47662020-47662039 MS.gene051433:CDS 45.0%
ATAAGACATGCCCATGGGTT+AGG - chr1.1:47662159-47662178 MS.gene051433:CDS 45.0%
ATCAACCTTGACCTCACAAG+AGG - chr1.1:47662734-47662753 MS.gene051433:CDS 45.0%
ATCTTCCATCTCAACCCTTC+AGG - chr1.1:47662371-47662390 MS.gene051433:CDS 45.0%
CCAATCACAAACCTACCTGA+AGG + chr1.1:47662389-47662408 None:intergenic 45.0%
CCTTCAGGTAGGTTTGTGAT+TGG - chr1.1:47662386-47662405 MS.gene051433:CDS 45.0%
GAAATTGGAGCTGGTGATCA+AGG - chr1.1:47662035-47662054 MS.gene051433:CDS 45.0%
GGAGCAAGATAAAGAGAGCA+AGG - chr1.1:47661782-47661801 MS.gene051433:CDS 45.0%
GGAGTGGTGCTTACATTGTT+AGG - chr1.1:47662525-47662544 MS.gene051433:CDS 45.0%
GGTGATCAAGGTCACATGTT+TGG - chr1.1:47662047-47662066 MS.gene051433:CDS 45.0%
GTAACTTGGGTCTTACCATC+AGG + chr1.1:47662185-47662204 None:intergenic 45.0%
TAGTTCAGGTGTTTCGTCAG+TGG + chr1.1:47662078-47662097 None:intergenic 45.0%
TCACAAGAGGTGGCAAATTC+AGG - chr1.1:47662747-47662766 MS.gene051433:CDS 45.0%
TCAGGTAGGTTTGTGATTGG+TGG - chr1.1:47662389-47662408 MS.gene051433:CDS 45.0%
TGAAGGGTTGAGATGGAAGA+TGG + chr1.1:47662372-47662391 None:intergenic 45.0%
TGAATTTGCCACCTCTTGTG+AGG + chr1.1:47662748-47662767 None:intergenic 45.0%
TGTGTGAGTGGCATTAGTTC+AGG + chr1.1:47662092-47662111 None:intergenic 45.0%
! AGTTTTTGTACAGGTCTCGC+AGG + chr1.1:47661811-47661830 None:intergenic 45.0%
! GAGCTTGGCACCAATTTTAG+TGG + chr1.1:47662123-47662142 None:intergenic 45.0%
! TACCAGAAGACTGCTGCTTA+CGG - chr1.1:47662770-47662789 MS.gene051433:CDS 45.0%
! TTTGTGATTGGTGGACCTCA+TGG - chr1.1:47662398-47662417 MS.gene051433:CDS 45.0%
!! CGTCGTGTTGAGTTGAAATG+AGG + chr1.1:47662262-47662281 None:intergenic 45.0%
!! GCAAAAAGTGTTGTCGCTTC+AGG - chr1.1:47662554-47662573 MS.gene051433:CDS 45.0%
!!! GAGAATTTTGACTTCAGGCC+TGG - chr1.1:47662701-47662720 MS.gene051433:CDS 45.0%
AACCTTGACCTCACAAGAGG+TGG - chr1.1:47662737-47662756 MS.gene051433:CDS 50.0%
AAGCCTGAGGAAATTGGAGC+TGG - chr1.1:47662026-47662045 MS.gene051433:CDS 50.0%
ACCTACCTGAAGGGTTGAGA+TGG + chr1.1:47662379-47662398 None:intergenic 50.0%
ACCTGGTCACAGATCTTGTC+GGG + chr1.1:47661735-47661754 None:intergenic 50.0%
AGGAAAGGATCCAACCAAGG+TGG - chr1.1:47662499-47662518 MS.gene051433:CDS 50.0%
AGGATTGTGTGCACGCGAAT+AGG + chr1.1:47662242-47662261 None:intergenic 50.0%
AGGTATTTAGCTGGGACGAC+AGG + chr1.1:47662338-47662357 None:intergenic 50.0%
CAGAGCCCTGATATTGCTCA+AGG - chr1.1:47661981-47662000 MS.gene051433:CDS 50.0%
CTCAGGAAAGGATCCAACCA+AGG - chr1.1:47662496-47662515 MS.gene051433:CDS 50.0%
CTCATAGTCCACCTTTGCCT+TGG + chr1.1:47661865-47661884 None:intergenic 50.0%
CTCCAAGCATGCATCAAGGA+TGG + chr1.1:47661766-47661785 None:intergenic 50.0%
CTTGCTCCAAGCATGCATCA+AGG + chr1.1:47661770-47661789 None:intergenic 50.0%
GGATTGTGTGCACGCGAATA+GGG + chr1.1:47662241-47662260 None:intergenic 50.0%
GGGTTTGTGTCTGCTGATGT+TGG - chr1.1:47661915-47661934 MS.gene051433:CDS 50.0%
GGTTGGATCCTTTCCTGAGA+AGG + chr1.1:47662495-47662514 None:intergenic 50.0%
TACCATCAGGCCTAACCCAT+GGG + chr1.1:47662172-47662191 None:intergenic 50.0%
TCACCAGCTCCAATTTCCTC+AGG + chr1.1:47662032-47662051 None:intergenic 50.0%
TCACTTGAGCAAGAAGCCTG+AGG - chr1.1:47662013-47662032 MS.gene051433:CDS 50.0%
TCCATCTCAACCCTTCAGGT+AGG - chr1.1:47662375-47662394 MS.gene051433:CDS 50.0%
TGCCATCCTTGATGCATGCT+TGG - chr1.1:47661761-47661780 MS.gene051433:CDS 50.0%
TGCTCGTCGTTGTATTGTGC+AGG - chr1.1:47662580-47662599 MS.gene051433:CDS 50.0%
TGTGAAGATGCTCAAGCCCA+AGG - chr1.1:47662832-47662851 MS.gene051433:CDS 50.0%
TTACCATCAGGCCTAACCCA+TGG + chr1.1:47662173-47662192 None:intergenic 50.0%
! ACCAGAAGACTGCTGCTTAC+GGG - chr1.1:47662771-47662790 MS.gene051433:CDS 50.0%
! CAAGGATGGCATCTGAAACC+TGG + chr1.1:47661752-47661771 None:intergenic 50.0%
!! ACTGCTGCTTACGGGCATTT+TGG - chr1.1:47662779-47662798 MS.gene051433:CDS 50.0%
!! GGAAGATGGTCTTGTCGTCA+AGG + chr1.1:47662358-47662377 None:intergenic 50.0%
!! GGGACACTTGCAGGAGTATT+GGG - chr1.1:47661895-47661914 MS.gene051433:CDS 50.0%
AGGATCCAACCAAGGTGGAC+AGG - chr1.1:47662504-47662523 MS.gene051433:CDS 55.0%
ATGAGCACCCCAACCACCAT+AGG + chr1.1:47662462-47662481 None:intergenic 55.0%
CCTGGTCACAGATCTTGTCG+GGG + chr1.1:47661734-47661753 None:intergenic 55.0%
GTGGCAAGCACATGTGTGAG+TGG + chr1.1:47662104-47662123 None:intergenic 55.0%
TGCCACCTCTTGTGAGGTCA+AGG + chr1.1:47662742-47662761 None:intergenic 55.0%
! CGGGACACTTGCAGGAGTAT+TGG - chr1.1:47661894-47661913 MS.gene051433:CDS 55.0%
! TATGGTGGTTGGGGTGCTCA+TGG - chr1.1:47662461-47662480 MS.gene051433:CDS 55.0%
! TGGTGGACCTCATGGAGATG+CGG - chr1.1:47662406-47662425 MS.gene051433:CDS 55.0%
!! TGGAGGTGCCTTCTCAGGAA+AGG - chr1.1:47662484-47662503 MS.gene051433:CDS 55.0%
AGCACCACTCCTGTCCACCT+TGG + chr1.1:47662516-47662535 None:intergenic 60.0%
CCAACCAAGGTGGACAGGAG+TGG - chr1.1:47662509-47662528 MS.gene051433:CDS 60.0%
CCACTCCTGTCCACCTTGGT+TGG + chr1.1:47662512-47662531 None:intergenic 60.0%
CCCCGACAAGATCTGTGACC+AGG - chr1.1:47661731-47661750 MS.gene051433:CDS 60.0%
GCCCGTAAGCAGCAGTCTTC+TGG + chr1.1:47662775-47662794 None:intergenic 60.0%
GGTGGACCTCATGGAGATGC+GGG - chr1.1:47662407-47662426 MS.gene051433:CDS 60.0%
GTGCACGCGAATAGGGACCA+TGG + chr1.1:47662234-47662253 None:intergenic 60.0%
GTGGACCTCATGGAGATGCG+GGG - chr1.1:47662408-47662427 MS.gene051433:CDS 60.0%
!! CATGGTGGAGGTGCCTTCTC+AGG - chr1.1:47662479-47662498 MS.gene051433:CDS 60.0%
!! TGCCCATGGGTTAGGCCTGA+TGG - chr1.1:47662167-47662186 MS.gene051433:CDS 60.0%
CATGGAGATGCGGGGCTCAC+CGG - chr1.1:47662416-47662435 MS.gene051433:CDS 65.0%
GTGAGCCCCGCATCTCCATG+AGG + chr1.1:47662416-47662435 None:intergenic 65.0%
! GGTGGTTGGGGTGCTCATGG+TGG - chr1.1:47662464-47662483 MS.gene051433:CDS 65.0%
! GGTTGGGGTGCTCATGGTGG+AGG - chr1.1:47662467-47662486 MS.gene051433:CDS 65.0%
GAGATGCGGGGCTCACCGGA+AGG - chr1.1:47662420-47662439 MS.gene051433:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 47661687 47662859 47661687 ID=MS.gene051433
chr1.1 mRNA 47661687 47662859 47661687 ID=MS.gene051433.t1;Parent=MS.gene051433
chr1.1 exon 47661687 47662859 47661687 ID=MS.gene051433.t1.exon1;Parent=MS.gene051433.t1
chr1.1 CDS 47661687 47662859 47661687 ID=cds.MS.gene051433.t1;Parent=MS.gene051433.t1
Gene Sequence

>MS.gene051433

ATGGATACCTTCCTATTCACCTCAGAATCTGTAAACGAAGGTCACCCCGACAAGATCTGTGACCAGGTTTCAGATGCCATCCTTGATGCATGCTTGGAGCAAGATAAAGAGAGCAAGGTTGCCTGCGAGACCTGTACAAAAACTAACATGGTTATGGTCTTTGGTGAAATCACAACCAAGGCAAAGGTGGACTATGAGAAAATAGTTCGGGACACTTGCAGGAGTATTGGGTTTGTGTCTGCTGATGTTGGTCTTGATGCTGACAAATGCAATGTTCTCGTCAACATTGAGCAACAGAGCCCTGATATTGCTCAAGGAGTTCACGGTCACTTGAGCAAGAAGCCTGAGGAAATTGGAGCTGGTGATCAAGGTCACATGTTTGGCTATGCCACTGACGAAACACCTGAACTAATGCCACTCACACATGTGCTTGCCACTAAAATTGGTGCCAAGCTCACTGAAGTTAGAAAGAATAAGACATGCCCATGGGTTAGGCCTGATGGTAAGACCCAAGTTACCGTTGAATACAAGAATGATAATGGAGCCATGGTCCCTATTCGCGTGCACACAATCCTCATTTCAACTCAACACGACGAAACTGTCACAAATGAAAAGATTGCTCAAGATTTGAAAGAGCATGTTATTAAACCTGTCGTCCCAGCTAAATACCTTGACGACAAGACCATCTTCCATCTCAACCCTTCAGGTAGGTTTGTGATTGGTGGACCTCATGGAGATGCGGGGCTCACCGGAAGGAAGATCATTATTGATACCTATGGTGGTTGGGGTGCTCATGGTGGAGGTGCCTTCTCAGGAAAGGATCCAACCAAGGTGGACAGGAGTGGTGCTTACATTGTTAGGCAAGCTGCAAAAAGTGTTGTCGCTTCAGGGCTTGCTCGTCGTTGTATTGTGCAGGTTTCTTATGCAATTGGAGTGCCAGAGCCACTTTCTGTTTTTGTGGACACTTACAAAACTGGAAAGATTCCAGATAAGGATATTTTGGTTCTGATTAAGGAGAATTTTGACTTCAGGCCTGGAATGATTGCTATCAACCTTGACCTCACAAGAGGTGGCAAATTCAGGTACCAGAAGACTGCTGCTTACGGGCATTTTGGACGTGACGATCCTGATTTTACATGGGAGACTGTGAAGATGCTCAAGCCCAAGGCTTGA
Protein sequence

>MS.gene051433.t1

MDTFLFTSESVNEGHPDKICDQVSDAILDACLEQDKESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSADVGLDADKCNVLVNIEQQSPDIAQGVHGHLSKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKIGAKLTEVRKNKTCPWVRPDGKTQVTVEYKNDNGAMVPIRVHTILISTQHDETVTNEKIAQDLKEHVIKPVVPAKYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILVLIKENFDFRPGMIAINLDLTRGGKFRYQKTAAYGHFGRDDPDFTWETVKMLKPKA