Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06532.t1 | XP_013461508.1 | 95 | 219 | 6 | 4 | 1 | 216 | 1 | 217 | 9.50E-107 | 396.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06532.t1 | A0A072V2F8 | 95.0 | 219 | 6 | 4 | 1 | 216 | 1 | 217 | 6.9e-107 | 396.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049403 | MS.gene06532 | 0.86365 | 2.14E-64 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06532.t1 | MTR_3g093970 | 94.064 | 219 | 8 | 4 | 1 | 216 | 1 | 217 | 3.00e-129 | 365 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06532.t1 | AT5G05250 | 55.944 | 143 | 60 | 2 | 86 | 226 | 86 | 227 | 9.87e-40 | 137 |
| MS.gene06532.t1 | AT3G56360 | 42.135 | 178 | 90 | 5 | 44 | 216 | 40 | 209 | 4.13e-33 | 120 |
Find 83 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACGATCATTAGCACTAAT+TGG | 0.223351 | 3.2:-78794057 | MS.gene06532:CDS |
| GTTATATTTGTGGAGGAATT+GGG | 0.248067 | 3.2:-78794466 | MS.gene06532:CDS |
| GGTTATATTTGTGGAGGAAT+TGG | 0.264874 | 3.2:-78794467 | MS.gene06532:CDS |
| GTTGGGTCTGGACCGGGTTC+AGG | 0.300482 | 3.2:-78794316 | MS.gene06532:CDS |
| TTATATTTGTGGAGGAATTG+GGG | 0.360867 | 3.2:-78794465 | MS.gene06532:CDS |
| TCTGGACCGGGTTCAGGAAT+GGG | 0.379867 | 3.2:-78794310 | MS.gene06532:CDS |
| GACGGAGAAGGTGGAGGATT+GGG | 0.384900 | 3.2:-78794539 | MS.gene06532:CDS |
| AAAACGAGCCGGGTTGGGTC+TGG | 0.389519 | 3.2:-78794328 | MS.gene06532:CDS |
| TGGAACGTAATGGGAAGAAC+AGG | 0.405040 | 3.2:-78794708 | MS.gene06532:CDS |
| GGAGGATTGGGAGGCTGTGA+AGG | 0.411187 | 3.2:-78794527 | MS.gene06532:CDS |
| AACAACGAATGAAGCTGTTC+AGG | 0.411540 | 3.2:-78794680 | MS.gene06532:CDS |
| AGATGATTGTGGAACGTAAT+GGG | 0.415578 | 3.2:-78794717 | MS.gene06532:CDS |
| GTTCTGTTGCGATCGGTGAT+TGG | 0.423534 | 3.2:-78794807 | MS.gene06532:CDS |
| TGTTGAAAACGAGCCGGGTT+GGG | 0.427346 | 3.2:-78794333 | MS.gene06532:CDS |
| GTCTGGACCGGGTTCAGGAA+TGG | 0.435512 | 3.2:-78794311 | MS.gene06532:CDS |
| CGACGGAGAAGGTGGAGGAT+TGG | 0.436970 | 3.2:-78794540 | MS.gene06532:CDS |
| GAGCCGGGTTGGGTCTGGAC+CGG | 0.437835 | 3.2:-78794323 | MS.gene06532:CDS |
| GGGAGGCTGTGAAGGAGAGA+TGG | 0.438554 | 3.2:-78794519 | MS.gene06532:CDS |
| CTCTGGCATCGGAGTTTCAC+CGG | 0.440988 | 3.2:+78794492 | None:intergenic |
| GTGGATGAGGGAATCGGTGG+TGG | 0.441944 | 3.2:-78794638 | MS.gene06532:CDS |
| CGTTTAACCGCCGGAGTTGG+TGG | 0.448577 | 3.2:-78794874 | MS.gene06532:CDS |
| GGAGGCTGTGAAGGAGAGAT+GGG | 0.458250 | 3.2:-78794518 | MS.gene06532:CDS |
| ATGGCGTCTTCGTCGTCTCT+AGG | 0.462063 | 3.2:-78794910 | MS.gene06532:CDS |
| GGGGTTGTGGTTCAAGGAAA+AGG | 0.464208 | 3.2:-78794382 | MS.gene06532:CDS |
| ACTCGATCGACGGTGAAGAA+AGG | 0.467484 | 3.2:-78794784 | MS.gene06532:CDS |
| TTTGAAGGAAGCACCGTTGT+TGG | 0.467700 | 3.2:-78794602 | MS.gene06532:CDS |
| GAAGATGAGGCGGAGGACGG+TGG | 0.468835 | 3.2:-78794442 | MS.gene06532:CDS |
| GTGGTTCAAGGAAAAGGTGT+TGG | 0.473560 | 3.2:-78794376 | MS.gene06532:CDS |
| AGGCTCAAGAGAAGCTTGAT+AGG | 0.482412 | 3.2:-78794660 | MS.gene06532:CDS |
| CTCGATCGACGGTGAAGAAA+GGG | 0.484903 | 3.2:-78794783 | MS.gene06532:CDS |
| AGCCGGGTTGGGTCTGGACC+GGG | 0.486033 | 3.2:-78794322 | MS.gene06532:CDS |
| GCGGAGGACGGTGGTGAAAG+AGG | 0.486596 | 3.2:-78794433 | MS.gene06532:CDS |
| TGGTTCAAGGAAAAGGTGTT+GGG | 0.496589 | 3.2:-78794375 | MS.gene06532:CDS |
| AAGATGATTGTGGAACGTAA+TGG | 0.505563 | 3.2:-78794718 | MS.gene06532:CDS |
| TTATTTGTTGAAAACGAGCC+GGG | 0.518152 | 3.2:-78794338 | MS.gene06532:CDS |
| GAAGCTTGATAGGTGGATGA+GGG | 0.520578 | 3.2:-78794650 | MS.gene06532:CDS |
| AATCGTTTAACCGCCGGAGT+TGG | 0.521448 | 3.2:-78794877 | MS.gene06532:CDS |
| CGGAGGACGGTGGTGAAAGA+GGG | 0.521733 | 3.2:-78794432 | MS.gene06532:CDS |
| GTGAAGGAGAGATGGGAGAC+CGG | 0.529770 | 3.2:-78794511 | MS.gene06532:CDS |
| GAGGATCTCTGCGGTGGCGA+CGG | 0.530685 | 3.2:-78794761 | MS.gene06532:CDS |
| AGAAGCTTGATAGGTGGATG+AGG | 0.532276 | 3.2:-78794651 | MS.gene06532:CDS |
| TGATAGGTGGATGAGGGAAT+CGG | 0.532849 | 3.2:-78794644 | MS.gene06532:CDS |
| AACCCGGTCCAGACCCAACC+CGG | 0.533521 | 3.2:+78794320 | None:intergenic |
| GTTAGCGACGGAGAAGGTGG+AGG | 0.540240 | 3.2:-78794545 | MS.gene06532:CDS |
| GGGGAAGATGAGGCGGAGGA+CGG | 0.540891 | 3.2:-78794445 | MS.gene06532:CDS |
| GAAGTTAGCGACGGAGAAGG+TGG | 0.543641 | 3.2:-78794548 | MS.gene06532:CDS |
| TTGTTGAAAACGAGCCGGGT+TGG | 0.551851 | 3.2:-78794334 | MS.gene06532:CDS |
| AAAAGGTGTTGGGTGTGACC+CGG | 0.554245 | 3.2:-78794365 | MS.gene06532:CDS |
| GTTATTTGTTGAAAACGAGC+CGG | 0.556951 | 3.2:-78794339 | MS.gene06532:CDS |
| GGAGATTGTGAAGAATTTGA+AGG | 0.558302 | 3.2:-78794617 | MS.gene06532:CDS |
| TCTTCGTCGTCTCTAGGTAT+CGG | 0.558850 | 3.2:-78794904 | MS.gene06532:CDS |
| CTTCTGAATACCACCAACTC+CGG | 0.568440 | 3.2:+78794864 | None:intergenic |
| AAGAAAGAACGACGAAGATG+TGG | 0.568911 | 3.2:-78794405 | MS.gene06532:CDS |
| TACGAAGTTAGCGACGGAGA+AGG | 0.580644 | 3.2:-78794551 | MS.gene06532:CDS |
| GGAGAAGGTGGAGGATTGGG+AGG | 0.588439 | 3.2:-78794536 | MS.gene06532:CDS |
| GTGAAACTCCGATGCCAGAG+GGG | 0.590722 | 3.2:-78794489 | MS.gene06532:CDS |
| AGAAAGAACGACGAAGATGT+GGG | 0.592121 | 3.2:-78794404 | MS.gene06532:CDS |
| GCATAAACTTGCACCAACAA+CGG | 0.598610 | 3.2:+78794589 | None:intergenic |
| GGCGACGGCGACGACTGTGA+CGG | 0.602177 | 3.2:-78794746 | MS.gene06532:CDS |
| CCAATTAGTGCTAATGATCG+TGG | 0.606530 | 3.2:+78794057 | None:intergenic |
| GGTGAAACTCCGATGCCAGA+GGG | 0.614021 | 3.2:-78794490 | MS.gene06532:CDS |
| AAAACACCCATTCCTGAACC+CGG | 0.615401 | 3.2:+78794304 | None:intergenic |
| GGAAACAATCGTTTAACCGC+CGG | 0.619806 | 3.2:-78794883 | MS.gene06532:CDS |
| CGGTGATTGGACTCGATCGA+CGG | 0.620655 | 3.2:-78794794 | MS.gene06532:CDS |
| CGGTGAAACTCCGATGCCAG+AGG | 0.621056 | 3.2:-78794491 | MS.gene06532:CDS |
| TATATTTGTGGAGGAATTGG+GGG | 0.628775 | 3.2:-78794464 | MS.gene06532:CDS |
| GAAAGAACGACGAAGATGTG+GGG | 0.629964 | 3.2:-78794403 | MS.gene06532:CDS |
| TAGGTGGATGAGGGAATCGG+TGG | 0.633045 | 3.2:-78794641 | MS.gene06532:CDS |
| AAAGAACGACGAAGATGTGG+GGG | 0.634814 | 3.2:-78794402 | MS.gene06532:CDS |
| CTCAAGAGAAGCTTGATAGG+TGG | 0.638974 | 3.2:-78794657 | MS.gene06532:CDS |
| GATCGACGGTGAAGAAAGGG+AGG | 0.641077 | 3.2:-78794780 | MS.gene06532:CDS |
| GGAACGTAATGGGAAGAACA+GGG | 0.641411 | 3.2:-78794707 | MS.gene06532:CDS |
| TGAAACTCCGATGCCAGAGG+GGG | 0.651085 | 3.2:-78794488 | MS.gene06532:CDS |
| CAGAACACGTCACTACTGAT+CGG | 0.652599 | 3.2:+78794824 | None:intergenic |
| CTGAATACCACCAACTCCGG+CGG | 0.657189 | 3.2:+78794867 | None:intergenic |
| GAAAGGGAGGATCTCTGCGG+TGG | 0.657261 | 3.2:-78794767 | MS.gene06532:CDS |
| GTGACGTGTTCTGTTGCGAT+CGG | 0.671449 | 3.2:-78794814 | MS.gene06532:CDS |
| GAACGTAATGGGAAGAACAG+GGG | 0.672347 | 3.2:-78794706 | MS.gene06532:CDS |
| GACGGCGAATAAGATGATTG+TGG | 0.679352 | 3.2:-78794728 | MS.gene06532:CDS |
| AGACAATACGAAGTTAGCGA+CGG | 0.691790 | 3.2:-78794557 | MS.gene06532:CDS |
| CGTAATGGGAAGAACAGGGG+AGG | 0.717284 | 3.2:-78794703 | MS.gene06532:CDS |
| AAGAACGACGAAGATGTGGG+GGG | 0.740066 | 3.2:-78794401 | MS.gene06532:CDS |
| GAAGAAAGGGAGGATCTCTG+CGG | 0.748817 | 3.2:-78794770 | MS.gene06532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TGATATATCAAACAAAGATG+TGG | - | chr3.2:78794840-78794859 | MS.gene06532:CDS | 25.0% |
| !! | GTTTTCAACAAATAACAAAC+CGG | + | chr3.2:78794597-78794616 | None:intergenic | 25.0% |
| !! | TTTTCAACAAATAACAAACC+GGG | + | chr3.2:78794596-78794615 | None:intergenic | 25.0% |
| AGTCTCAACTTAAGAATTGT+TGG | - | chr3.2:78794709-78794728 | MS.gene06532:CDS | 30.0% | |
| GTTATATTTGTGGAGGAATT+GGG | - | chr3.2:78794474-78794493 | MS.gene06532:CDS | 30.0% | |
| TTATATTTGTGGAGGAATTG+GGG | - | chr3.2:78794475-78794494 | MS.gene06532:CDS | 30.0% | |
| AAGATGATTGTGGAACGTAA+TGG | - | chr3.2:78794222-78794241 | MS.gene06532:intron | 35.0% | |
| ACAAAGATGTGGATCTGTAT+AGG | - | chr3.2:78794851-78794870 | MS.gene06532:CDS | 35.0% | |
| AGATGATTGTGGAACGTAAT+GGG | - | chr3.2:78794223-78794242 | MS.gene06532:intron | 35.0% | |
| CAAAGATGTGGATCTGTATA+GGG | - | chr3.2:78794852-78794871 | MS.gene06532:CDS | 35.0% | |
| CACTCTCACCAAACAAAAAT+GGG | + | chr3.2:78794667-78794686 | None:intergenic | 35.0% | |
| GGAGATTGTGAAGAATTTGA+AGG | - | chr3.2:78794323-78794342 | MS.gene06532:CDS | 35.0% | |
| GGTTATATTTGTGGAGGAAT+TGG | - | chr3.2:78794473-78794492 | MS.gene06532:CDS | 35.0% | |
| TATATTTGTGGAGGAATTGG+GGG | - | chr3.2:78794476-78794495 | MS.gene06532:CDS | 35.0% | |
| TCACTCTCACCAAACAAAAA+TGG | + | chr3.2:78794668-78794687 | None:intergenic | 35.0% | |
| ! | GTTATTTGTTGAAAACGAGC+CGG | - | chr3.2:78794601-78794620 | MS.gene06532:CDS | 35.0% |
| ! | TTATTTGTTGAAAACGAGCC+GGG | - | chr3.2:78794602-78794621 | MS.gene06532:CDS | 35.0% |
| !! | ATTCTTAAGTTGAGACTGTG+CGG | + | chr3.2:78794706-78794725 | None:intergenic | 35.0% |
| !! | TTTCTCGACCCATTTTTGTT+TGG | - | chr3.2:78794656-78794675 | MS.gene06532:CDS | 35.0% |
| AACAACGAATGAAGCTGTTC+AGG | - | chr3.2:78794260-78794279 | MS.gene06532:intron | 40.0% | |
| AAGAAAGAACGACGAAGATG+TGG | - | chr3.2:78794535-78794554 | MS.gene06532:CDS | 40.0% | |
| AGAAAGAACGACGAAGATGT+GGG | - | chr3.2:78794536-78794555 | MS.gene06532:CDS | 40.0% | |
| AGACAATACGAAGTTAGCGA+CGG | - | chr3.2:78794383-78794402 | MS.gene06532:CDS | 40.0% | |
| CCAATTAGTGCTAATGATCG+TGG | + | chr3.2:78794886-78794905 | None:intergenic | 40.0% | |
| CCACGATCATTAGCACTAAT+TGG | - | chr3.2:78794883-78794902 | MS.gene06532:CDS | 40.0% | |
| GCATAAACTTGCACCAACAA+CGG | + | chr3.2:78794354-78794373 | None:intergenic | 40.0% | |
| GTTGGCTATTGCAAAGTCAT+TGG | - | chr3.2:78794727-78794746 | MS.gene06532:CDS | 40.0% | |
| !! | TGGTTCAAGGAAAAGGTGTT+GGG | - | chr3.2:78794565-78794584 | MS.gene06532:CDS | 40.0% |
| AAAACACCCATTCCTGAACC+CGG | + | chr3.2:78794639-78794658 | None:intergenic | 45.0% | |
| AAAGAACGACGAAGATGTGG+GGG | - | chr3.2:78794538-78794557 | MS.gene06532:CDS | 45.0% | |
| AATATAACCCCCTCTGGCAT+CGG | + | chr3.2:78794462-78794481 | None:intergenic | 45.0% | |
| AGAAGCTTGATAGGTGGATG+AGG | - | chr3.2:78794289-78794308 | MS.gene06532:CDS | 45.0% | |
| AGAGGGGGTTATATTTGTGG+AGG | - | chr3.2:78794467-78794486 | MS.gene06532:CDS | 45.0% | |
| AGGCTCAAGAGAAGCTTGAT+AGG | - | chr3.2:78794280-78794299 | MS.gene06532:intron | 45.0% | |
| CAGAACACGTCACTACTGAT+CGG | + | chr3.2:78794119-78794138 | None:intergenic | 45.0% | |
| CTCAAGAGAAGCTTGATAGG+TGG | - | chr3.2:78794283-78794302 | MS.gene06532:intron | 45.0% | |
| CTTCTGAATACCACCAACTC+CGG | + | chr3.2:78794079-78794098 | None:intergenic | 45.0% | |
| GAAAGAACGACGAAGATGTG+GGG | - | chr3.2:78794537-78794556 | MS.gene06532:CDS | 45.0% | |
| GAAGCTTGATAGGTGGATGA+GGG | - | chr3.2:78794290-78794309 | MS.gene06532:CDS | 45.0% | |
| GACGGCGAATAAGATGATTG+TGG | - | chr3.2:78794212-78794231 | MS.gene06532:intron | 45.0% | |
| GGAAACAATCGTTTAACCGC+CGG | - | chr3.2:78794057-78794076 | MS.gene06532:CDS | 45.0% | |
| TCCACAAATATAACCCCCTC+TGG | + | chr3.2:78794468-78794487 | None:intergenic | 45.0% | |
| TCTTCGTCGTCTCTAGGTAT+CGG | - | chr3.2:78794036-78794055 | MS.gene06532:CDS | 45.0% | |
| TGATAGGTGGATGAGGGAAT+CGG | - | chr3.2:78794296-78794315 | MS.gene06532:CDS | 45.0% | |
| ! | GAACGTAATGGGAAGAACAG+GGG | - | chr3.2:78794234-78794253 | MS.gene06532:intron | 45.0% |
| ! | GGAACGTAATGGGAAGAACA+GGG | - | chr3.2:78794233-78794252 | MS.gene06532:intron | 45.0% |
| ! | GTGGTTCAAGGAAAAGGTGT+TGG | - | chr3.2:78794564-78794583 | MS.gene06532:CDS | 45.0% |
| ! | TGGAACGTAATGGGAAGAAC+AGG | - | chr3.2:78794232-78794251 | MS.gene06532:intron | 45.0% |
| !! | TTTGAAGGAAGCACCGTTGT+TGG | - | chr3.2:78794338-78794357 | MS.gene06532:CDS | 45.0% |
| AAGAACGACGAAGATGTGGG+GGG | - | chr3.2:78794539-78794558 | MS.gene06532:CDS | 50.0% | |
| AATCGTTTAACCGCCGGAGT+TGG | - | chr3.2:78794063-78794082 | MS.gene06532:CDS | 50.0% | |
| ACTCGATCGACGGTGAAGAA+AGG | - | chr3.2:78794156-78794175 | MS.gene06532:intron | 50.0% | |
| CTCGATCGACGGTGAAGAAA+GGG | - | chr3.2:78794157-78794176 | MS.gene06532:intron | 50.0% | |
| GAAGAAAGGGAGGATCTCTG+CGG | - | chr3.2:78794170-78794189 | MS.gene06532:intron | 50.0% | |
| GCCAGAGGGGGTTATATTTG+TGG | - | chr3.2:78794464-78794483 | MS.gene06532:CDS | 50.0% | |
| GGGGTTGTGGTTCAAGGAAA+AGG | - | chr3.2:78794558-78794577 | MS.gene06532:CDS | 50.0% | |
| GTGACGTGTTCTGTTGCGAT+CGG | - | chr3.2:78794126-78794145 | MS.gene06532:intron | 50.0% | |
| GTTCTGTTGCGATCGGTGAT+TGG | - | chr3.2:78794133-78794152 | MS.gene06532:intron | 50.0% | |
| TACGAAGTTAGCGACGGAGA+AGG | - | chr3.2:78794389-78794408 | MS.gene06532:CDS | 50.0% | |
| TGTTGAAAACGAGCCGGGTT+GGG | - | chr3.2:78794607-78794626 | MS.gene06532:CDS | 50.0% | |
| TTGTTGAAAACGAGCCGGGT+TGG | - | chr3.2:78794606-78794625 | MS.gene06532:CDS | 50.0% | |
| !! | AAAAGGTGTTGGGTGTGACC+CGG | - | chr3.2:78794575-78794594 | MS.gene06532:CDS | 50.0% |
| ATGGCGTCTTCGTCGTCTCT+AGG | - | chr3.2:78794030-78794049 | MS.gene06532:CDS | 55.0% | |
| ATGTGGGGGGTTGTGGTTCA+AGG | - | chr3.2:78794552-78794571 | MS.gene06532:CDS | 55.0% | |
| CGGTGATTGGACTCGATCGA+CGG | - | chr3.2:78794146-78794165 | MS.gene06532:intron | 55.0% | |
| CTGAATACCACCAACTCCGG+CGG | + | chr3.2:78794076-78794095 | None:intergenic | 55.0% | |
| GAAGTTAGCGACGGAGAAGG+TGG | - | chr3.2:78794392-78794411 | MS.gene06532:CDS | 55.0% | |
| GACGGAGAAGGTGGAGGATT+GGG | - | chr3.2:78794401-78794420 | MS.gene06532:CDS | 55.0% | |
| GATCGACGGTGAAGAAAGGG+AGG | - | chr3.2:78794160-78794179 | MS.gene06532:intron | 55.0% | |
| GGAATTGGGGGAAGATGAGG+CGG | - | chr3.2:78794488-78794507 | MS.gene06532:CDS | 55.0% | |
| GGAGGAATTGGGGGAAGATG+AGG | - | chr3.2:78794485-78794504 | MS.gene06532:CDS | 55.0% | |
| GGAGGCTGTGAAGGAGAGAT+GGG | - | chr3.2:78794422-78794441 | MS.gene06532:CDS | 55.0% | |
| GGTGAAACTCCGATGCCAGA+GGG | - | chr3.2:78794450-78794469 | MS.gene06532:CDS | 55.0% | |
| GTGAAACTCCGATGCCAGAG+GGG | - | chr3.2:78794451-78794470 | MS.gene06532:CDS | 55.0% | |
| GTGAAGGAGAGATGGGAGAC+CGG | - | chr3.2:78794429-78794448 | MS.gene06532:CDS | 55.0% | |
| TAGGTGGATGAGGGAATCGG+TGG | - | chr3.2:78794299-78794318 | MS.gene06532:CDS | 55.0% | |
| TCTGGACCGGGTTCAGGAAT+GGG | - | chr3.2:78794630-78794649 | MS.gene06532:CDS | 55.0% | |
| TGAAACTCCGATGCCAGAGG+GGG | - | chr3.2:78794452-78794471 | MS.gene06532:CDS | 55.0% | |
| ! | CGTAATGGGAAGAACAGGGG+AGG | - | chr3.2:78794237-78794256 | MS.gene06532:intron | 55.0% |
| ! | CTCTGGCATCGGAGTTTCAC+CGG | + | chr3.2:78794451-78794470 | None:intergenic | 55.0% |
| ATTGGGGGAAGATGAGGCGG+AGG | - | chr3.2:78794491-78794510 | MS.gene06532:CDS | 60.0% | |
| CGACGGAGAAGGTGGAGGAT+TGG | - | chr3.2:78794400-78794419 | MS.gene06532:CDS | 60.0% | |
| CGGAGGACGGTGGTGAAAGA+GGG | - | chr3.2:78794508-78794527 | MS.gene06532:CDS | 60.0% | |
| CGGTGAAACTCCGATGCCAG+AGG | - | chr3.2:78794449-78794468 | MS.gene06532:CDS | 60.0% | |
| CGTTTAACCGCCGGAGTTGG+TGG | - | chr3.2:78794066-78794085 | MS.gene06532:CDS | 60.0% | |
| GAAAGGGAGGATCTCTGCGG+TGG | - | chr3.2:78794173-78794192 | MS.gene06532:intron | 60.0% | |
| GACGAAGATGTGGGGGGTTG+TGG | - | chr3.2:78794545-78794564 | MS.gene06532:CDS | 60.0% | |
| GGAGAAGGTGGAGGATTGGG+AGG | - | chr3.2:78794404-78794423 | MS.gene06532:CDS | 60.0% | |
| GGAGGATTGGGAGGCTGTGA+AGG | - | chr3.2:78794413-78794432 | MS.gene06532:CDS | 60.0% | |
| GGGAGGCTGTGAAGGAGAGA+TGG | - | chr3.2:78794421-78794440 | MS.gene06532:CDS | 60.0% | |
| GTCTGGACCGGGTTCAGGAA+TGG | - | chr3.2:78794629-78794648 | MS.gene06532:CDS | 60.0% | |
| GTGGATGAGGGAATCGGTGG+TGG | - | chr3.2:78794302-78794321 | MS.gene06532:CDS | 60.0% | |
| GTTAGCGACGGAGAAGGTGG+AGG | - | chr3.2:78794395-78794414 | MS.gene06532:CDS | 60.0% | |
| ! | AAAACGAGCCGGGTTGGGTC+TGG | - | chr3.2:78794612-78794631 | MS.gene06532:CDS | 60.0% |
| AACCCGGTCCAGACCCAACC+CGG | + | chr3.2:78794623-78794642 | None:intergenic | 65.0% | |
| GAAGATGAGGCGGAGGACGG+TGG | - | chr3.2:78794498-78794517 | MS.gene06532:CDS | 65.0% | |
| GAGGATCTCTGCGGTGGCGA+CGG | - | chr3.2:78794179-78794198 | MS.gene06532:intron | 65.0% | |
| GCGGAGGACGGTGGTGAAAG+AGG | - | chr3.2:78794507-78794526 | MS.gene06532:CDS | 65.0% | |
| GGGGAAGATGAGGCGGAGGA+CGG | - | chr3.2:78794495-78794514 | MS.gene06532:CDS | 65.0% | |
| GTTGGGTCTGGACCGGGTTC+AGG | - | chr3.2:78794624-78794643 | MS.gene06532:CDS | 65.0% | |
| GGCGACGGCGACGACTGTGA+CGG | - | chr3.2:78794194-78794213 | MS.gene06532:intron | 70.0% | |
| ! | AGCCGGGTTGGGTCTGGACC+GGG | - | chr3.2:78794618-78794637 | MS.gene06532:CDS | 70.0% |
| ! | GAGCCGGGTTGGGTCTGGAC+CGG | - | chr3.2:78794617-78794636 | MS.gene06532:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78794030 | 78794932 | 78794030 | ID=MS.gene06532 |
| chr3.2 | mRNA | 78794030 | 78794932 | 78794030 | ID=MS.gene06532.t1;Parent=MS.gene06532 |
| chr3.2 | exon | 78794285 | 78794932 | 78794285 | ID=MS.gene06532.t1.exon1;Parent=MS.gene06532.t1 |
| chr3.2 | CDS | 78794285 | 78794932 | 78794285 | ID=cds.MS.gene06532.t1;Parent=MS.gene06532.t1 |
| chr3.2 | exon | 78794030 | 78794089 | 78794030 | ID=MS.gene06532.t1.exon2;Parent=MS.gene06532.t1 |
| chr3.2 | CDS | 78794030 | 78794089 | 78794030 | ID=cds.MS.gene06532.t1;Parent=MS.gene06532.t1 |
| Gene Sequence |
| Protein sequence |
