AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065346

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065346.t1 MTR_2g043370 90.517 232 12 2 1 222 1 232 1.67e-141 396
MS.gene065346.t1 MTR_7g076600 36.066 244 133 4 2 222 17 260 3.88e-47 157
MS.gene065346.t1 MTR_1g047620 34.831 178 95 3 2 176 17 176 1.60e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATGCTATTGTTTATA+AGG 0.183643 2.4:-46852249 MS.gene065346:intron
TTGATATTAGCTTGGGGAAT+TGG 0.256716 2.4:-46852350 MS.gene065346:CDS
TACCTTAGAGAAGGGTTTAT+TGG 0.262362 2.4:-46852480 MS.gene065346:CDS
CCGGTACCGTTTCCATGTTT+TGG 0.290443 2.4:-46851358 MS.gene065346:CDS
TTCCAATAAACCCTTCTCTA+AGG 0.300083 2.4:+46852478 None:intergenic
TCTCATTTCTCATGTTTGAT+AGG 0.309735 2.4:+46850514 None:intergenic
AATACCTTCTTGAAAGCATT+AGG 0.326852 2.4:+46850657 None:intergenic
TTGAAAATGTTGGAGTTAGA+AGG 0.334068 2.4:-46850719 MS.gene065346:CDS
TGATATTAGCTTGGGGAATT+GGG 0.340131 2.4:-46852349 MS.gene065346:CDS
TGCAGCATCGTTTCAAGAAA+TGG 0.345990 2.4:-46852426 MS.gene065346:CDS
TGCTTTATGTACCAGTTAGA+AGG 0.346663 2.4:-46852316 MS.gene065346:CDS
AAACAATAGCATTTGGAGTA+AGG 0.358216 2.4:+46852255 None:intergenic
CTAAGTATAAACCTTCTAAC+TGG 0.364571 2.4:+46852305 None:intergenic
AGAAGATGGTTCGCATTTGA+TGG 0.375797 2.4:-46850466 MS.gene065346:intron
CTCTGTTATTGATATTAGCT+TGG 0.381718 2.4:-46852358 MS.gene065346:CDS
TCTGTTATTGATATTAGCTT+GGG 0.384025 2.4:-46852357 MS.gene065346:CDS
ACCTTATAAACAATAGCATT+TGG 0.387126 2.4:+46852248 None:intergenic
CAGTGACGATGTTAAAATCT+TGG 0.391514 2.4:-46850691 MS.gene065346:CDS
TCTCTTAGAATTGAAAATGT+TGG 0.435318 2.4:-46850729 MS.gene065346:CDS
TAAGAGAATATACACCGAAA+AGG 0.449056 2.4:+46850745 None:intergenic
GGAAGTTGGAAGCTCTGTTA+AGG 0.468716 2.4:-46850159 MS.gene065346:CDS
AGAAAGTAAACGCTGCATAT+AGG 0.471749 2.4:-46850135 None:intergenic
AGTGACGATGTTAAAATCTT+GGG 0.484992 2.4:-46850690 MS.gene065346:CDS
AAAGTACCCACTGTACTGTT+TGG 0.489475 2.4:+46852384 None:intergenic
TTGCAGAAGCTGGAGGAAGT+TGG 0.490194 2.4:-46850173 MS.gene065346:CDS
AAGAGAATATACACCGAAAA+GGG 0.491442 2.4:+46850746 None:intergenic
TCTGCTACTATTGCAGAAGC+TGG 0.525441 2.4:-46850183 MS.gene065346:CDS
TCATATCTCAATGACTTGGA+TGG 0.539115 2.4:+46850224 None:intergenic
CCAAAACATGGAAACGGTAC+CGG 0.543194 2.4:+46851358 None:intergenic
GGAAATAGATACCTTAGAGA+AGG 0.551779 2.4:-46852489 MS.gene065346:CDS
GAAATAGATACCTTAGAGAA+GGG 0.553643 2.4:-46852488 MS.gene065346:CDS
AAATCCTAATGCTTTCAAGA+AGG 0.556507 2.4:-46850661 MS.gene065346:intron
CATGTGTCTACATTAGAAGA+TGG 0.559672 2.4:-46850480 MS.gene065346:CDS
TTATGCAGCACTCCAAAACA+TGG 0.560395 2.4:+46851346 None:intergenic
CTGTTATTGATATTAGCTTG+GGG 0.569273 2.4:-46852356 MS.gene065346:CDS
TCTAGCTCAGGTCACAAGGC+CGG 0.575112 2.4:-46851377 MS.gene065346:intron
CAAGTACCAAACAGTACAGT+GGG 0.576403 2.4:-46852390 MS.gene065346:CDS
AGAATCATATCTCAATGACT+TGG 0.577202 2.4:+46850220 None:intergenic
AACAACAATGGATGAAGTAG+TGG 0.577356 2.4:-46852510 None:intergenic
AGCACTCCAAAACATGGAAA+CGG 0.586314 2.4:+46851352 None:intergenic
TATATCTAGCTCAGGTCACA+AGG 0.589332 2.4:-46851381 MS.gene065346:intron
GCATTCTGTGGCTGATGTCG+TGG 0.596159 2.4:-46851305 MS.gene065346:CDS
GCTGATGTCGTGGTTGAACA+AGG 0.624287 2.4:-46851295 MS.gene065346:intron
GCATGTCTTATTGCATTCTG+TGG 0.631218 2.4:-46851317 MS.gene065346:CDS
ATATGATTCTACTCATTCTG+AGG 0.633241 2.4:-46850207 MS.gene065346:CDS
GCTACTATTGCAGAAGCTGG+AGG 0.634604 2.4:-46850180 MS.gene065346:CDS
TCAAGTACCAAACAGTACAG+TGG 0.671926 2.4:-46852391 MS.gene065346:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAAAAATAAAAAAA+GGG + chr2.4:46851416-46851435 None:intergenic 10.0%
!! TACTTGAAAAAAATAAAAAA+AGG + chr2.4:46851417-46851436 None:intergenic 10.0%
!!! ATTTTTTTATTTTTTTCTGT+TGG - chr2.4:46850453-46850472 MS.gene065346:intron 10.0%
!!! TTTTTTTATTTTTTTCTGTT+GGG - chr2.4:46850454-46850473 MS.gene065346:intron 10.0%
!! AATACATTAATATGTATAAG+AGG - chr2.4:46850566-46850585 MS.gene065346:intron 15.0%
!! CATAATTATATAATTACATG+AGG + chr2.4:46851495-46851514 None:intergenic 15.0%
!! CTCATGTAATTATATAATTA+TGG - chr2.4:46851493-46851512 MS.gene065346:intron 15.0%
!! GATATAATTAATCATATACT+AGG + chr2.4:46851535-46851554 None:intergenic 15.0%
!! GTATATTATTACTGAATATT+GGG - chr2.4:46850883-46850902 MS.gene065346:intron 15.0%
!! TATAAATTGAAAGAAATAGT+AGG + chr2.4:46850434-46850453 None:intergenic 15.0%
!!! ATAAACTATGAATTTGTTAT+TGG - chr2.4:46850745-46850764 MS.gene065346:CDS 15.0%
!! AAGTAAACGACTTATATTAT+TGG + chr2.4:46852270-46852289 None:intergenic 20.0%
!! ATAATTTATCAAGAAAGTGA+AGG + chr2.4:46850675-46850694 None:intergenic 20.0%
!! ATGTATTATATTTGCATGTA+TGG - chr2.4:46851207-46851226 MS.gene065346:intron 20.0%
!! GGTATATTATTACTGAATAT+TGG - chr2.4:46850882-46850901 MS.gene065346:intron 20.0%
!! TAGAAATTAAACTACAAAAC+CGG + chr2.4:46851833-46851852 None:intergenic 20.0%
!!! AAATGGCATTAAACTTTTAA+GGG - chr2.4:46851018-46851037 MS.gene065346:intron 20.0%
!!! AGAAATCATGGTTTTAAATT+AGG + chr2.4:46851760-46851779 None:intergenic 20.0%
!!! ATGCTATTTACAATAGTTAT+GGG - chr2.4:46851562-46851581 MS.gene065346:intron 20.0%
!!! CAATTTTTTCCTCTATATTT+TGG - chr2.4:46852224-46852243 MS.gene065346:intron 20.0%
!!! CTATATTAACATCTTTTACT+AGG + chr2.4:46850832-46850851 None:intergenic 20.0%
!!! GAAATCATGGTTTTAAATTA+GGG + chr2.4:46851759-46851778 None:intergenic 20.0%
!!! TATGCTATTTACAATAGTTA+TGG - chr2.4:46851561-46851580 MS.gene065346:intron 20.0%
!!! TGAATTTTTGTTGTTGAAAT+TGG - chr2.4:46850521-46850540 MS.gene065346:CDS 20.0%
!!! TTAAAAGTTTAATGCCATTT+GGG + chr2.4:46851018-46851037 None:intergenic 20.0%
! AAGAAAATCACAATTTGATC+AGG + chr2.4:46852016-46852035 None:intergenic 25.0%
! AATCAATATCCTTTCTATTG+TGG - chr2.4:46851715-46851734 MS.gene065346:intron 25.0%
! ACCTTATAAACAATAGCATT+TGG + chr2.4:46850394-46850413 None:intergenic 25.0%
! ATTAATGATACTTGCTCATA+GGG - chr2.4:46851860-46851879 MS.gene065346:intron 25.0%
! ATTATATAATTACATGAGGC+TGG + chr2.4:46851491-46851510 None:intergenic 25.0%
! CTTAAAAGTTTAATGCCATT+TGG + chr2.4:46851019-46851038 None:intergenic 25.0%
! GGAAAAAATTGAATACTTCT+CGG + chr2.4:46852215-46852234 None:intergenic 25.0%
! TAATGAGATACTAGAAATCA+TGG + chr2.4:46851772-46851791 None:intergenic 25.0%
! TAGTTTCATGCTATAAGATT+TGG - chr2.4:46851438-46851457 MS.gene065346:intron 25.0%
! TCCAAATGCTATTGTTTATA+AGG - chr2.4:46850390-46850409 MS.gene065346:intron 25.0%
! TCTCTTAGAATTGAAAATGT+TGG - chr2.4:46851910-46851929 MS.gene065346:intron 25.0%
! TTTACTAGGATTTAAACATG+AGG + chr2.4:46850818-46850837 None:intergenic 25.0%
!! CAAATGGCATTAAACTTTTA+AGG - chr2.4:46851017-46851036 MS.gene065346:intron 25.0%
!! TCTGTTATTGATATTAGCTT+GGG - chr2.4:46850282-46850301 MS.gene065346:intron 25.0%
!! TGCTATTTACAATAGTTATG+GGG - chr2.4:46851563-46851582 MS.gene065346:intron 25.0%
AAATCCTAATGCTTTCAAGA+AGG - chr2.4:46851978-46851997 MS.gene065346:intron 30.0%
AAATTGAATACTTCTCGGAT+TGG + chr2.4:46852210-46852229 None:intergenic 30.0%
AAGAGAATATACACCGAAAA+GGG + chr2.4:46851896-46851915 None:intergenic 30.0%
AGAATCATATCTCAATGACT+TGG + chr2.4:46852422-46852441 None:intergenic 30.0%
AGTGACGATGTTAAAATCTT+GGG - chr2.4:46851949-46851968 MS.gene065346:intron 30.0%
AGTGAGTGATGTATCATAAA+AGG + chr2.4:46851134-46851153 None:intergenic 30.0%
ATACCTGGTCTATATTCAAA+AGG - chr2.4:46851102-46851121 MS.gene065346:intron 30.0%
ATATGATTCTACTCATTCTG+AGG - chr2.4:46852432-46852451 MS.gene065346:CDS 30.0%
ATTATATAATTATGGCCCTC+TGG - chr2.4:46851501-46851520 MS.gene065346:intron 30.0%
CAAAAGTGACCAAAATATAG+AGG + chr2.4:46852236-46852255 None:intergenic 30.0%
CATTAATTGTACCTGTTCAT+AGG - chr2.4:46851787-46851806 MS.gene065346:intron 30.0%
CTAAGTATAAACCTTCTAAC+TGG + chr2.4:46850337-46850356 None:intergenic 30.0%
CTCTGTTATTGATATTAGCT+TGG - chr2.4:46850281-46850300 MS.gene065346:intron 30.0%
GAAATAGATACCTTAGAGAA+GGG - chr2.4:46850151-46850170 MS.gene065346:CDS 30.0%
GATTAATGATACTTGCTCAT+AGG - chr2.4:46851859-46851878 MS.gene065346:intron 30.0%
TAAGAGAATATACACCGAAA+AGG + chr2.4:46851897-46851916 None:intergenic 30.0%
TATAAGTCGTTTACTTATCC+CGG - chr2.4:46852274-46852293 MS.gene065346:CDS 30.0%
TCTCATTTCTCATGTTTGAT+AGG + chr2.4:46852128-46852147 None:intergenic 30.0%
TGTCTAAATTGTGGTTTCAA+TGG - chr2.4:46851681-46851700 MS.gene065346:intron 30.0%
TTGAAAATGTTGGAGTTAGA+AGG - chr2.4:46851920-46851939 MS.gene065346:intron 30.0%
! AAACAATAGCATTTGGAGTA+AGG + chr2.4:46850387-46850406 None:intergenic 30.0%
! ACTCACTTTAGACATGATTT+TGG - chr2.4:46851147-46851166 MS.gene065346:intron 30.0%
! CTCACTTTAGACATGATTTT+GGG - chr2.4:46851148-46851167 MS.gene065346:intron 30.0%
! CTGTTATTGATATTAGCTTG+GGG - chr2.4:46850283-46850302 MS.gene065346:intron 30.0%
! GAATGAGTTGAGAAGTTAAA+GGG - chr2.4:46850792-46850811 MS.gene065346:intron 30.0%
! TGAATGAGTTGAGAAGTTAA+AGG - chr2.4:46850791-46850810 MS.gene065346:intron 30.0%
! TTACCTTTTGAATATAGACC+AGG + chr2.4:46851108-46851127 None:intergenic 30.0%
! TTCTGTGTTCTTTAAGCTTT+TGG - chr2.4:46851386-46851405 MS.gene065346:intron 30.0%
! TTTCATTTTCCTACATGTTG+CGG + chr2.4:46851654-46851673 None:intergenic 30.0%
! TTTTCTGTTGGGAATATTAC+TGG - chr2.4:46850465-46850484 MS.gene065346:intron 30.0%
!! AAGATTTTAACATCGTCACT+GGG + chr2.4:46851949-46851968 None:intergenic 30.0%
!! AATACCTTCTTGAAAGCATT+AGG + chr2.4:46851985-46852004 None:intergenic 30.0%
!! ATGAATTTGTTATTGGAGCT+GGG - chr2.4:46850752-46850771 MS.gene065346:CDS 30.0%
!! CTGTCTTGTTTGTAATCAAA+GGG + chr2.4:46850916-46850935 None:intergenic 30.0%
!! TATGAATTTGTTATTGGAGC+TGG - chr2.4:46850751-46850770 MS.gene065346:CDS 30.0%
!! TGTCTTGTTTGTAATCAAAG+GGG + chr2.4:46850915-46850934 None:intergenic 30.0%
!!! AAACTTCTTTTTTCTTTGCC+TGG - chr2.4:46852077-46852096 MS.gene065346:intron 30.0%
AAACCACAATTTAGACAGCA+AGG + chr2.4:46851678-46851697 None:intergenic 35.0%
AGGCTGGAAGAATAAAAGTA+AGG + chr2.4:46851475-46851494 None:intergenic 35.0%
ATACTAGGAATTACAACCAG+AGG + chr2.4:46851520-46851539 None:intergenic 35.0%
ATAGTAACATTTAGCGTTCG+TGG - chr2.4:46850848-46850867 MS.gene065346:intron 35.0%
ATCAAGAAAGTGAAGGCAAA+CGG + chr2.4:46850668-46850687 None:intergenic 35.0%
CAAAACCAATCCTCTTCAAT+AGG + chr2.4:46850611-46850630 None:intergenic 35.0%
CAGTGACGATGTTAAAATCT+TGG - chr2.4:46851948-46851967 MS.gene065346:intron 35.0%
CATGTGTCTACATTAGAAGA+TGG - chr2.4:46852159-46852178 MS.gene065346:intron 35.0%
CATTGTTTAAATTGCGACTG+TGG - chr2.4:46851599-46851618 MS.gene065346:intron 35.0%
CTCTAATCAAAACTCCCAAA+TGG - chr2.4:46851001-46851020 MS.gene065346:intron 35.0%
GGAAATAGATACCTTAGAGA+AGG - chr2.4:46850150-46850169 MS.gene065346:CDS 35.0%
TAACAGCCTAAAAAGAAACC+AGG + chr2.4:46852098-46852117 None:intergenic 35.0%
TACATGTTGCGGCAATATAA+AGG + chr2.4:46851643-46851662 None:intergenic 35.0%
TACCTTAGAGAAGGGTTTAT+TGG - chr2.4:46850159-46850178 MS.gene065346:CDS 35.0%
TACTAGGAATTACAACCAGA+GGG + chr2.4:46851519-46851538 None:intergenic 35.0%
TGCTTTATGTACCAGTTAGA+AGG - chr2.4:46850323-46850342 MS.gene065346:intron 35.0%
TGTTGGGAATATTACTGGTA+TGG - chr2.4:46850470-46850489 MS.gene065346:CDS 35.0%
TTAACTGCTGTTGTTCATGT+TGG - chr2.4:46852336-46852355 MS.gene065346:CDS 35.0%
TTCCAATAAACCCTTCTCTA+AGG + chr2.4:46850164-46850183 None:intergenic 35.0%
TTTATATTGCCGCAACATGT+AGG - chr2.4:46851642-46851661 MS.gene065346:intron 35.0%
TTTCTATTGTGGCTGCAATT+GGG - chr2.4:46851726-46851745 MS.gene065346:intron 35.0%
! AATCCTTGCTGTCTAAATTG+TGG - chr2.4:46851672-46851691 MS.gene065346:intron 35.0%
! ACTTTAGACATGATTTTGGG+TGG - chr2.4:46851151-46851170 MS.gene065346:intron 35.0%
! ATCTGTGTTATATCTAGCTC+AGG - chr2.4:46851250-46851269 MS.gene065346:intron 35.0%
! TCATATCTCAATGACTTGGA+TGG + chr2.4:46852418-46852437 None:intergenic 35.0%
! TCTTTGCCTGGTTTCTTTTT+AGG - chr2.4:46852089-46852108 MS.gene065346:intron 35.0%
! TGATATTAGCTTGGGGAATT+GGG - chr2.4:46850290-46850309 MS.gene065346:intron 35.0%
! TTGATATTAGCTTGGGGAAT+TGG - chr2.4:46850289-46850308 MS.gene065346:intron 35.0%
!! CAAGATTTTAACATCGTCAC+TGG + chr2.4:46851950-46851969 None:intergenic 35.0%
!! GCTGTCTTGTTTGTAATCAA+AGG + chr2.4:46850917-46850936 None:intergenic 35.0%
!!! AGAGGATTTGTTTTGTCTTC+TGG - chr2.4:46850584-46850603 MS.gene065346:intron 35.0%
!!! GAGGATTTGTTTTGTCTTCT+GGG - chr2.4:46850585-46850604 MS.gene065346:intron 35.0%
!!! TTGGGAGTTTTGATTAGAGA+GGG + chr2.4:46851000-46851019 None:intergenic 35.0%
!!! TTTGGGAGTTTTGATTAGAG+AGG + chr2.4:46851001-46851020 None:intergenic 35.0%
AGAAGATGGTTCGCATTTGA+TGG - chr2.4:46852173-46852192 MS.gene065346:intron 40.0%
AGCACTCCAAAACATGGAAA+CGG + chr2.4:46851290-46851309 None:intergenic 40.0%
AGGAATAGAGCCTTTGTCAT+CGG + chr2.4:46850958-46850977 None:intergenic 40.0%
CAAGTACCAAACAGTACAGT+GGG - chr2.4:46850249-46850268 MS.gene065346:intron 40.0%
CAATTGCAGCCACAATAGAA+AGG + chr2.4:46851727-46851746 None:intergenic 40.0%
CTTTCTATTGTGGCTGCAAT+TGG - chr2.4:46851725-46851744 MS.gene065346:intron 40.0%
GTGAGTAGTATCCTATGAAC+AGG + chr2.4:46851801-46851820 None:intergenic 40.0%
TACTACTCACAAAGTTGCAC+CGG - chr2.4:46851811-46851830 MS.gene065346:intron 40.0%
TCAAGAAAGTGAAGGCAAAC+GGG + chr2.4:46850667-46850686 None:intergenic 40.0%
TCAAGTACCAAACAGTACAG+TGG - chr2.4:46850248-46850267 MS.gene065346:intron 40.0%
TGCAGCATCGTTTCAAGAAA+TGG - chr2.4:46850213-46850232 MS.gene065346:CDS 40.0%
TTAAATTGCGACTGTGGTTG+CGG - chr2.4:46851605-46851624 MS.gene065346:intron 40.0%
TTATGCAGCACTCCAAAACA+TGG + chr2.4:46851296-46851315 None:intergenic 40.0%
! AAAGTACCCACTGTACTGTT+TGG + chr2.4:46850258-46850277 None:intergenic 40.0%
! AGGGCAACATCTTGTCATTT+GGG + chr2.4:46850981-46851000 None:intergenic 40.0%
! GCATGTCTTATTGCATTCTG+TGG - chr2.4:46851322-46851341 MS.gene065346:CDS 40.0%
! TATATCTAGCTCAGGTCACA+AGG - chr2.4:46851258-46851277 MS.gene065346:intron 40.0%
!! ATTTTAACATCGTCACTGGG+TGG + chr2.4:46851946-46851965 None:intergenic 40.0%
!! GACATGATTTTGGGTGGTTT+TGG - chr2.4:46851157-46851176 MS.gene065346:intron 40.0%
!! TGTCATCCAGAAAGTGTTAG+CGG - chr2.4:46850629-46850648 MS.gene065346:intron 40.0%
!!! TGGTCACTTTTGCTTCTAAG+TGG - chr2.4:46852244-46852263 MS.gene065346:intron 40.0%
ACAAACAAGACAGCACTTCG+AGG - chr2.4:46850923-46850942 MS.gene065346:intron 45.0%
ACCCTCAACTTGAGATTTCC+GGG + chr2.4:46852295-46852314 None:intergenic 45.0%
CAAACAAGACAGCACTTCGA+GGG - chr2.4:46850924-46850943 MS.gene065346:intron 45.0%
CACCCTCAACTTGAGATTTC+CGG + chr2.4:46852296-46852315 None:intergenic 45.0%
CCAAAACATGGAAACGGTAC+CGG + chr2.4:46851284-46851303 None:intergenic 45.0%
GAGGGCAACATCTTGTCATT+TGG + chr2.4:46850982-46851001 None:intergenic 45.0%
GGAAGTTGGAAGCTCTGTTA+AGG - chr2.4:46852480-46852499 MS.gene065346:CDS 45.0%
GGAATAGAGCCTTTGTCATC+GGG + chr2.4:46850957-46850976 None:intergenic 45.0%
TCTGCTACTATTGCAGAAGC+TGG - chr2.4:46852456-46852475 MS.gene065346:CDS 45.0%
! ATCCCGGAAATCTCAAGTTG+AGG - chr2.4:46852290-46852309 MS.gene065346:CDS 45.0%
! GCAACATCTTGTCATTTGGG+AGG + chr2.4:46850978-46850997 None:intergenic 45.0%
! GGGTACTTGCAATCCCTTTT+CGG - chr2.4:46851880-46851899 MS.gene065346:intron 45.0%
! GTTGCTCATGTGGTTCTATC+TGG - chr2.4:46851047-46851066 MS.gene065346:intron 45.0%
!! TCCCGGAAATCTCAAGTTGA+GGG - chr2.4:46852291-46852310 MS.gene065346:CDS 45.0%
!!! AGGGAGTTTTGTTGCTCATG+TGG - chr2.4:46851037-46851056 MS.gene065346:intron 45.0%
CTGGGCCTATTGAAGAGGAT+TGG - chr2.4:46850603-46850622 MS.gene065346:intron 50.0%
GCGTTCGTGGTAGAACAAAC+TGG - chr2.4:46850861-46850880 MS.gene065346:intron 50.0%
GCTACTATTGCAGAAGCTGG+AGG - chr2.4:46852459-46852478 MS.gene065346:CDS 50.0%
GCTGATGTCGTGGTTGAACA+AGG - chr2.4:46851344-46851363 MS.gene065346:CDS 50.0%
GTCTTCTGGGCCTATTGAAG+AGG - chr2.4:46850598-46850617 MS.gene065346:intron 50.0%
TTGCAGAAGCTGGAGGAAGT+TGG - chr2.4:46852466-46852485 MS.gene065346:CDS 50.0%
TTGTGGTTTCAATGGCGTCG+CGG - chr2.4:46851689-46851708 MS.gene065346:intron 50.0%
! CCGGTACCGTTTCCATGTTT+TGG - chr2.4:46851281-46851300 MS.gene065346:intron 50.0%
CTAGTTGCGCGCAAGATACC+TGG - chr2.4:46851087-46851106 MS.gene065346:intron 55.0%
GCATTCTGTGGCTGATGTCG+TGG - chr2.4:46851334-46851353 MS.gene065346:CDS 55.0%
GGTCTGCTTCCCGATGACAA+AGG - chr2.4:46850945-46850964 MS.gene065346:intron 55.0%
! TCTAGCTCAGGTCACAAGGC+CGG - chr2.4:46851262-46851281 MS.gene065346:intron 55.0%
GCTGCGCCGCTAACACTTTC+TGG + chr2.4:46850638-46850657 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 46850136 46852525 46850136 ID=MS.gene065346
chr2.4 mRNA 46850136 46852525 46850136 ID=MS.gene065346.t1;Parent=MS.gene065346
chr2.4 exon 46852250 46852525 46852250 ID=MS.gene065346.t1.exon1;Parent=MS.gene065346.t1
chr2.4 CDS 46852250 46852525 46852250 ID=cds.MS.gene065346.t1;Parent=MS.gene065346.t1
chr2.4 exon 46851296 46851389 46851296 ID=MS.gene065346.t1.exon2;Parent=MS.gene065346.t1
chr2.4 CDS 46851296 46851389 46851296 ID=cds.MS.gene065346.t1;Parent=MS.gene065346.t1
chr2.4 exon 46850662 46850780 46850662 ID=MS.gene065346.t1.exon3;Parent=MS.gene065346.t1
chr2.4 CDS 46850662 46850780 46850662 ID=cds.MS.gene065346.t1;Parent=MS.gene065346.t1
chr2.4 exon 46850467 46850550 46850467 ID=MS.gene065346.t1.exon4;Parent=MS.gene065346.t1
chr2.4 CDS 46850467 46850550 46850467 ID=cds.MS.gene065346.t1;Parent=MS.gene065346.t1
chr2.4 exon 46850136 46850252 46850136 ID=MS.gene065346.t1.exon5;Parent=MS.gene065346.t1
chr2.4 CDS 46850136 46850252 46850136 ID=cds.MS.gene065346.t1;Parent=MS.gene065346.t1
Gene Sequence

>MS.gene065346

ATGGATGAAGTAGTGGAAATAGATACCTTAGAGAAGGGTTTATTGGAAGAAAATGAAGAAAACGAAGAAGTGTTATATGCAGCATCGTTTCAAGAAATGGAGAAGAATTTCATCAAGTACCAAACAGTACAGTGGGTACTTTACTCTCTGTTATTGATATTAGCTTGGGGAATTGGGTTACTCATGTTGCTTTATGTACCAGTTAGAAGGTTTATACTTAGAAAAGATATTCGTTCTAGAAGTCTTTACCTTACTCCAAATGCTATTGTTTATAAGGTATTCTTTTCTTCACTTTCCTACTATTTCTTTCAATTTATATTTTTTTATTTTTTTCTGTTGGGAATATTACTGGTATGGATTTGAGAGATTGTTAGTATAAGTTATATGAATTTTTGTTGTTGAAATTGGAAATTTGTTGTGATTATGATAAAATACATTAATATGTATAAGAGGATTTGTTTTGTCTTCTGGGCCTATTGAAGAGGATTGGTTTTGTCATCCAGAAAGTGTTAGCGGCGCAGCTTGTTGCCCGTTTGCCTTCACTTTCTTGATAAATTATTATAAATTATATATAAAAGAATTAAGCTCATTAAAAAGTTAATATGTATAATAAACTATGAATTTGTTATTGGAGCTGGGAGTTTGAACTTTGAGTTGAATGAGTTGAGAAGTTAAAGGGCCTCATGTTTAAATCCTAGTAAAAGATGTTAATATAGTAACATTTAGCGTTCGTGGTAGAACAAACTGGTATATTATTACTGAATATTGGGAACAATCCCCTTTGATTACAAACAAGACAGCACTTCGAGGGTCTGCTTCCCGATGACAAAGGCTCTATTCCTCCCAAATGACAAGATGTTGCCCTCTCTAATCAAAACTCCCAAATGGCATTAAACTTTTAAGGGAGTTTTGTTGCTCATGTGGTTCTATCTGGTTAGAGTGATAGTCTTTCTAGTTGCGCGCAAGATACCTGGTCTATATTCAAAAGGTAACTGCCTTTTATGATACATCACTCACTTTAGACATGATTTTGGGTGGTTTTGGCTTTGTACTGATTTTGATAACTTATGAATGTATTATATTTGCATGTATGGATCTCTTGACATGTAATAAGATCTGTGTTATATCTAGCTCAGGTCACAAGGCCGGTACCGTTTCCATGTTTTGGAGTGCTGCATAAAGAGAAGCATGTCTTATTGCATTCTGTGGCTGATGTCGTGGTTGAACAAGGTGCACTATTTGCTGTTTTCTTCTGTGTTCTTTAAGCTTTTGGACAACCCTTTTTTTATTTTTTTCAAGTACTAGTTTCATGCTATAAGATTTGGTAGATTTTATGCCTTACTTTTATTCTTCCAGCCTCATGTAATTATATAATTATGGCCCTCTGGTTGTAATTCCTAGTATATGATTAATTATATCTGTTCGTATGCTATTTACAATAGTTATGGGGTTTTAATTTCTAGCATTGTTTAAATTGCGACTGTGGTTGCGGTTACGTTGTGAACCTTTATATTGCCGCAACATGTAGGAAAATGAAATCCTTGCTGTCTAAATTGTGGTTTCAATGGCGTCGCGGAAAAATCAATATCCTTTCTATTGTGGCTGCAATTGGGTTGCAAACCCTAATTTAAAACCATGATTTCTAGTATCTCATTAATTGTACCTGTTCATAGGATACTACTCACAAAGTTGCACCGGTTTTGTAGTTTAATTTCTAGTATCTGATTAATGATACTTGCTCATAGGGTACTTGCAATCCCTTTTCGGTGTATATTCTCTTAGAATTGAAAATGTTGGAGTTAGAAGGCCACCCAGTGACGATGTTAAAATCTTGGGAATTGCAAATCCTAATGCTTTCAAGAAGGTATTTGATTGTGCCTGATCAAATTGTGATTTTCTTTCTGTATTTCTTCATTCACTTTTGAATTGATGATATATGTTAAACTTCTTTTTTCTTTGCCTGGTTTCTTTTTAGGCTGTTATGATGCACCTATCAAACATGAGAAATGAGATTGTTTCAAGACATGTGTCTACATTAGAAGATGGTTCGCATTTGATGGTAAATCATTCGCCAATCCGAGAAGTATTCAATTTTTTCCTCTATATTTTGGTCACTTTTGCTTCTAAGTGGCCAATAATATAAGTCGTTTACTTATCCCGGAAATCTCAAGTTGAGGGTGTTGTCGTGTCGAGTATATTTTTAACTGCTGTTGTTCATGTTGGTTACTTATATGAATCTTTATCTTCTCGCTCACATTGTTTTGTCATTGTAGATGTCTCCATCCAAGTCATTGAGATATGATTCTACTCATTCTGAGGATCTGCTACTATTGCAGAAGCTGGAGGAAGTTGGAAGCTCTGTTAAGGTAGAAAGTAAACGCTGCATATAG
Protein sequence

>MS.gene065346.t1

MDEVVEIDTLEKGLLEENEENEEVLYAASFQEMEKNFIKYQTVQWVLYSLLLILAWGIGLLMLLYVPVRRFILRKDIRSRSLYLTPNAIVYKVTRPVPFPCFGVLHKEKHVLLHSVADVVVEQGYLQSLFGVYSLRIENVGVRRPPSDDVKILGIANPNAFKKAVMMHLSNMRNEIVSRHVSTLEDGSHLMMSPSKSLRYDSTHSEDLLLLQKLEEVGSSVKVESKRCI