AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057443

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene057443.t1 MTR_2g043370 90.517 232 12 2 1 222 1 232 1.67e-141 396
MS.gene057443.t1 MTR_7g076600 36.066 244 133 4 2 222 17 260 3.88e-47 157
MS.gene057443.t1 MTR_1g047620 34.831 178 95 3 2 176 17 176 1.60e-33 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 47 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAAATGCTATTGTTTATA+AGG 0.183643 2.4:-46870664 MS.gene057443:intron
TTGATATTAGCTTGGGGAAT+TGG 0.256716 2.4:-46870765 MS.gene057443:CDS
TACCTTAGAGAAGGGTTTAT+TGG 0.262362 2.4:-46870895 MS.gene057443:CDS
CCGGTACCGTTTCCATGTTT+TGG 0.290443 2.4:-46869773 MS.gene057443:CDS
TTCCAATAAACCCTTCTCTA+AGG 0.300083 2.4:+46870893 None:intergenic
TCTCATTTCTCATGTTTGAT+AGG 0.309735 2.4:+46868928 None:intergenic
AATACCTTCTTGAAAGCATT+AGG 0.326852 2.4:+46869071 None:intergenic
TTGAAAATGTTGGAGTTAGA+AGG 0.334068 2.4:-46869133 MS.gene057443:CDS
TGATATTAGCTTGGGGAATT+GGG 0.340131 2.4:-46870764 MS.gene057443:CDS
TGCAGCATCGTTTCAAGAAA+TGG 0.345990 2.4:-46870841 MS.gene057443:CDS
TGCTTTATGTACCAGTTAGA+AGG 0.346663 2.4:-46870731 MS.gene057443:CDS
AAACAATAGCATTTGGAGTA+AGG 0.358216 2.4:+46870670 None:intergenic
CTAAGTATAAACCTTCTAAC+TGG 0.364571 2.4:+46870720 None:intergenic
AGAAGATGGTTCGCATTTGA+TGG 0.375797 2.4:-46868880 MS.gene057443:intron
CTCTGTTATTGATATTAGCT+TGG 0.381718 2.4:-46870773 MS.gene057443:CDS
TCTGTTATTGATATTAGCTT+GGG 0.384025 2.4:-46870772 MS.gene057443:CDS
ACCTTATAAACAATAGCATT+TGG 0.387126 2.4:+46870663 None:intergenic
CAGTGACGATGTTAAAATCT+TGG 0.391514 2.4:-46869105 MS.gene057443:CDS
TCTCTTAGAATTGAAAATGT+TGG 0.435318 2.4:-46869143 MS.gene057443:CDS
TAAGAGAATATACACCGAAA+AGG 0.449056 2.4:+46869159 None:intergenic
GGAAGTTGGAAGCTCTGTTA+AGG 0.468716 2.4:-46868576 MS.gene057443:CDS
AGAAAGTAAACGCTGCATAT+AGG 0.471749 2.4:-46868552 None:intergenic
AGTGACGATGTTAAAATCTT+GGG 0.484992 2.4:-46869104 MS.gene057443:CDS
AAAGTACCCACTGTACTGTT+TGG 0.489475 2.4:+46870799 None:intergenic
TTGCAGAAGCTGGAGGAAGT+TGG 0.490194 2.4:-46868590 MS.gene057443:CDS
AAGAGAATATACACCGAAAA+GGG 0.491442 2.4:+46869160 None:intergenic
TCTGCTACTATTGCAGAAGC+TGG 0.525441 2.4:-46868600 MS.gene057443:CDS
TCATATCTCAATGACTTGGA+TGG 0.539115 2.4:+46868641 None:intergenic
CCAAAACATGGAAACGGTAC+CGG 0.543194 2.4:+46869773 None:intergenic
GGAAATAGATACCTTAGAGA+AGG 0.551779 2.4:-46870904 MS.gene057443:CDS
GAAATAGATACCTTAGAGAA+GGG 0.553643 2.4:-46870903 MS.gene057443:CDS
AAATCCTAATGCTTTCAAGA+AGG 0.556507 2.4:-46869075 MS.gene057443:intron
CATGTGTCTACATTAGAAGA+TGG 0.559672 2.4:-46868894 MS.gene057443:CDS
TTATGCAGCACTCCAAAACA+TGG 0.560395 2.4:+46869761 None:intergenic
CTGTTATTGATATTAGCTTG+GGG 0.569273 2.4:-46870771 MS.gene057443:CDS
TCTAGCTCAGGTCACAAGGC+CGG 0.575112 2.4:-46869792 MS.gene057443:intron
CAAGTACCAAACAGTACAGT+GGG 0.576403 2.4:-46870805 MS.gene057443:CDS
AGAATCATATCTCAATGACT+TGG 0.577202 2.4:+46868637 None:intergenic
AACAACAATGGATGAAGTAG+TGG 0.577356 2.4:-46870925 None:intergenic
AGCACTCCAAAACATGGAAA+CGG 0.586314 2.4:+46869767 None:intergenic
TATATCTAGCTCAGGTCACA+AGG 0.589332 2.4:-46869796 MS.gene057443:intron
GCATTCTGTGGCTGATGTCG+TGG 0.596159 2.4:-46869720 MS.gene057443:CDS
GCTGATGTCGTGGTTGAACA+AGG 0.624287 2.4:-46869710 MS.gene057443:intron
GCATGTCTTATTGCATTCTG+TGG 0.631218 2.4:-46869732 MS.gene057443:CDS
ATATGATTCTACTCATTCTG+AGG 0.633241 2.4:-46868624 MS.gene057443:CDS
GCTACTATTGCAGAAGCTGG+AGG 0.634604 2.4:-46868597 MS.gene057443:CDS
TCAAGTACCAAACAGTACAG+TGG 0.671926 2.4:-46870806 MS.gene057443:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTTGAAAAAAATAAAAAAA+GGG + chr2.4:46869833-46869852 None:intergenic 10.0%
!! TACTTGAAAAAAATAAAAAA+AGG + chr2.4:46869834-46869853 None:intergenic 10.0%
!!! ATTTTTTTATTTTTTTCTGT+TGG - chr2.4:46868870-46868889 MS.gene057443:intron 10.0%
!!! TTTTTTTATTTTTTTCTGTT+GGG - chr2.4:46868871-46868890 MS.gene057443:intron 10.0%
!! AATACATTAATATGTATAAG+AGG - chr2.4:46868983-46869002 MS.gene057443:intron 15.0%
!! CATAATTATATAATTACATG+AGG + chr2.4:46869912-46869931 None:intergenic 15.0%
!! CTCATGTAATTATATAATTA+TGG - chr2.4:46869910-46869929 MS.gene057443:intron 15.0%
!! GATATAATTAATCATATACT+AGG + chr2.4:46869952-46869971 None:intergenic 15.0%
!! GTATATTATTACTGAATATT+GGG - chr2.4:46869300-46869319 MS.gene057443:intron 15.0%
!! TATAAATTGAAAGAAATAGT+AGG + chr2.4:46868851-46868870 None:intergenic 15.0%
!!! AGAAATCATAGTTTTAAATT+AGG + chr2.4:46870178-46870197 None:intergenic 15.0%
!!! ATAAACTATGAATTTGTTAT+TGG - chr2.4:46869162-46869181 MS.gene057443:CDS 15.0%
!!! GAAATCATAGTTTTAAATTA+GGG + chr2.4:46870177-46870196 None:intergenic 15.0%
!! AAGTAAACGACTTATATTAT+TGG + chr2.4:46870688-46870707 None:intergenic 20.0%
!! ATAATTTATCAAGAAAGTGA+AGG + chr2.4:46869092-46869111 None:intergenic 20.0%
!! ATGTATTATATTTGCATGTA+TGG - chr2.4:46869624-46869643 MS.gene057443:intron 20.0%
!! GGTATATTATTACTGAATAT+TGG - chr2.4:46869299-46869318 MS.gene057443:intron 20.0%
!! TAGAAATTAAACTACAAAAC+CGG + chr2.4:46870251-46870270 None:intergenic 20.0%
!!! AAATGGCATTAAACTTTTAA+GGG - chr2.4:46869435-46869454 MS.gene057443:intron 20.0%
!!! ATGCTATTTACAATAGTTAT+GGG - chr2.4:46869979-46869998 MS.gene057443:intron 20.0%
!!! CAATTTTTTCCTCTATATTT+TGG - chr2.4:46870642-46870661 MS.gene057443:intron 20.0%
!!! CTATATTAACATCTTTTACT+AGG + chr2.4:46869249-46869268 None:intergenic 20.0%
!!! TATGCTATTTACAATAGTTA+TGG - chr2.4:46869978-46869997 MS.gene057443:intron 20.0%
!!! TGAATTTTTGTTGTTGAAAT+TGG - chr2.4:46868938-46868957 MS.gene057443:CDS 20.0%
!!! TTAAAAGTTTAATGCCATTT+GGG + chr2.4:46869435-46869454 None:intergenic 20.0%
! AAGAAAATCACAATTTGATC+AGG + chr2.4:46870434-46870453 None:intergenic 25.0%
! AATCAATATCCTTTCTATTG+TGG - chr2.4:46870132-46870151 MS.gene057443:intron 25.0%
! ACCTTATAAACAATAGCATT+TGG + chr2.4:46868811-46868830 None:intergenic 25.0%
! ATTAATGATACTTGCTCATA+GGG - chr2.4:46870278-46870297 MS.gene057443:intron 25.0%
! ATTATATAATTACATGAGGC+TGG + chr2.4:46869908-46869927 None:intergenic 25.0%
! CTTAAAAGTTTAATGCCATT+TGG + chr2.4:46869436-46869455 None:intergenic 25.0%
! GGAAAAAATTGAATACTTCT+CGG + chr2.4:46870633-46870652 None:intergenic 25.0%
! TAGTTTCATGCTATAAGATT+TGG - chr2.4:46869855-46869874 MS.gene057443:intron 25.0%
! TCCAAATGCTATTGTTTATA+AGG - chr2.4:46868807-46868826 MS.gene057443:intron 25.0%
! TCTCTTAGAATTGAAAATGT+TGG - chr2.4:46870328-46870347 MS.gene057443:intron 25.0%
! TTTACTAGGATTTAAACATG+AGG + chr2.4:46869235-46869254 None:intergenic 25.0%
!! CAAATGGCATTAAACTTTTA+AGG - chr2.4:46869434-46869453 MS.gene057443:intron 25.0%
!! TCTGTTATTGATATTAGCTT+GGG - chr2.4:46868699-46868718 MS.gene057443:intron 25.0%
!! TGCTATTTACAATAGTTATG+GGG - chr2.4:46869980-46869999 MS.gene057443:intron 25.0%
AAATCCTAATGCTTTCAAGA+AGG - chr2.4:46870396-46870415 MS.gene057443:intron 30.0%
AAATTGAATACTTCTCGGAT+TGG + chr2.4:46870628-46870647 None:intergenic 30.0%
AAGAGAATATACACCGAAAA+GGG + chr2.4:46870314-46870333 None:intergenic 30.0%
AGAATCATATCTCAATGACT+TGG + chr2.4:46870837-46870856 None:intergenic 30.0%
AGTGACGATGTTAAAATCTT+GGG - chr2.4:46870367-46870386 MS.gene057443:intron 30.0%
AGTGAGTGATGTATCATAAA+AGG + chr2.4:46869551-46869570 None:intergenic 30.0%
ATACCTGGTCTATATTCAAA+AGG - chr2.4:46869519-46869538 MS.gene057443:intron 30.0%
ATATGATTCTACTCATTCTG+AGG - chr2.4:46870847-46870866 MS.gene057443:CDS 30.0%
ATTATATAATTATGGCCCTC+TGG - chr2.4:46869918-46869937 MS.gene057443:intron 30.0%
CAAAAGTGACCAAAATATAG+AGG + chr2.4:46870654-46870673 None:intergenic 30.0%
CATTAATTGTACCTGTTCAT+AGG - chr2.4:46870205-46870224 MS.gene057443:intron 30.0%
CTAAGTATAAACCTTCTAAC+TGG + chr2.4:46868754-46868773 None:intergenic 30.0%
CTCTGTTATTGATATTAGCT+TGG - chr2.4:46868698-46868717 MS.gene057443:intron 30.0%
GAAATAGATACCTTAGAGAA+GGG - chr2.4:46868568-46868587 MS.gene057443:CDS 30.0%
GATTAATGATACTTGCTCAT+AGG - chr2.4:46870277-46870296 MS.gene057443:intron 30.0%
TAAGAGAATATACACCGAAA+AGG + chr2.4:46870315-46870334 None:intergenic 30.0%
TATAAGTCGTTTACTTATCC+CGG - chr2.4:46870692-46870711 MS.gene057443:CDS 30.0%
TCTCATTTCTCATGTTTGAT+AGG + chr2.4:46870546-46870565 None:intergenic 30.0%
TGTCTAAATTGTGGTTTCAA+TGG - chr2.4:46870098-46870117 MS.gene057443:intron 30.0%
TTGAAAATGTTGGAGTTAGA+AGG - chr2.4:46870338-46870357 MS.gene057443:intron 30.0%
! AAACAATAGCATTTGGAGTA+AGG + chr2.4:46868804-46868823 None:intergenic 30.0%
! ACTCACTTTAGACATGATTT+TGG - chr2.4:46869564-46869583 MS.gene057443:intron 30.0%
! CTCACTTTAGACATGATTTT+GGG - chr2.4:46869565-46869584 MS.gene057443:intron 30.0%
! CTGTTATTGATATTAGCTTG+GGG - chr2.4:46868700-46868719 MS.gene057443:intron 30.0%
! GAATGAGTTGAGAAGTTAAA+GGG - chr2.4:46869209-46869228 MS.gene057443:intron 30.0%
! TGAATGAGTTGAGAAGTTAA+AGG - chr2.4:46869208-46869227 MS.gene057443:intron 30.0%
! TTACCTTTTGAATATAGACC+AGG + chr2.4:46869525-46869544 None:intergenic 30.0%
! TTCTGTGTTCTTTAAGCTTT+TGG - chr2.4:46869803-46869822 MS.gene057443:intron 30.0%
! TTTCATTTTCCTACATGTTG+CGG + chr2.4:46870071-46870090 None:intergenic 30.0%
! TTTTCTGTTGGGAATATTAC+TGG - chr2.4:46868882-46868901 MS.gene057443:CDS 30.0%
!! AAGATTTTAACATCGTCACT+GGG + chr2.4:46870367-46870386 None:intergenic 30.0%
!! AATACCTTCTTGAAAGCATT+AGG + chr2.4:46870403-46870422 None:intergenic 30.0%
!! ATGAATTTGTTATTGGAGCT+GGG - chr2.4:46869169-46869188 MS.gene057443:CDS 30.0%
!! CTGTCTTGTTTGTAATCAAA+GGG + chr2.4:46869333-46869352 None:intergenic 30.0%
!! TATGAATTTGTTATTGGAGC+TGG - chr2.4:46869168-46869187 MS.gene057443:CDS 30.0%
!! TGTCTTGTTTGTAATCAAAG+GGG + chr2.4:46869332-46869351 None:intergenic 30.0%
!!! AAACTTCTTTTTTCTTTGCC+TGG - chr2.4:46870495-46870514 MS.gene057443:intron 30.0%
AAACCACAATTTAGACAGCA+AGG + chr2.4:46870095-46870114 None:intergenic 35.0%
AGGCTGGAAGAATAAAAGTA+AGG + chr2.4:46869892-46869911 None:intergenic 35.0%
ATACTAGGAATTACAACCAG+AGG + chr2.4:46869937-46869956 None:intergenic 35.0%
ATAGTAACATTTAGCGTTCG+TGG - chr2.4:46869265-46869284 MS.gene057443:intron 35.0%
ATCAAGAAAGTGAAGGCAAA+CGG + chr2.4:46869085-46869104 None:intergenic 35.0%
CAAAACCAATCCTCTTCAAT+AGG + chr2.4:46869028-46869047 None:intergenic 35.0%
CAGTGACGATGTTAAAATCT+TGG - chr2.4:46870366-46870385 MS.gene057443:intron 35.0%
CATGTGTCTACATTAGAAGA+TGG - chr2.4:46870577-46870596 MS.gene057443:intron 35.0%
CATTGTTTAAATTGCGACTG+TGG - chr2.4:46870016-46870035 MS.gene057443:intron 35.0%
CTCTAATCAAAACTCCCAAA+TGG - chr2.4:46869418-46869437 MS.gene057443:intron 35.0%
GGAAATAGATACCTTAGAGA+AGG - chr2.4:46868567-46868586 MS.gene057443:CDS 35.0%
TAACAGCCTAAAAAGAAACC+AGG + chr2.4:46870516-46870535 None:intergenic 35.0%
TACATGTTGCGGCAATATAA+AGG + chr2.4:46870060-46870079 None:intergenic 35.0%
TACCTTAGAGAAGGGTTTAT+TGG - chr2.4:46868576-46868595 MS.gene057443:CDS 35.0%
TACTAGGAATTACAACCAGA+GGG + chr2.4:46869936-46869955 None:intergenic 35.0%
TGCTTTATGTACCAGTTAGA+AGG - chr2.4:46868740-46868759 MS.gene057443:intron 35.0%
TGTTGGGAATATTACTGGTA+TGG - chr2.4:46868887-46868906 MS.gene057443:CDS 35.0%
TTAACTGCTGTTGTTCATGT+TGG - chr2.4:46870754-46870773 MS.gene057443:CDS 35.0%
TTCCAATAAACCCTTCTCTA+AGG + chr2.4:46868581-46868600 None:intergenic 35.0%
TTTATATTGCCGCAACATGT+AGG - chr2.4:46870059-46870078 MS.gene057443:intron 35.0%
TTTCTATTGTGGCTGCAATT+GGG - chr2.4:46870143-46870162 MS.gene057443:intron 35.0%
! AATCCTTGCTGTCTAAATTG+TGG - chr2.4:46870089-46870108 MS.gene057443:intron 35.0%
! ACTTTAGACATGATTTTGGG+TGG - chr2.4:46869568-46869587 MS.gene057443:intron 35.0%
! ATCTGTGTTATATCTAGCTC+AGG - chr2.4:46869667-46869686 MS.gene057443:intron 35.0%
! TCATATCTCAATGACTTGGA+TGG + chr2.4:46870833-46870852 None:intergenic 35.0%
! TCTTTGCCTGGTTTCTTTTT+AGG - chr2.4:46870507-46870526 MS.gene057443:intron 35.0%
! TGATATTAGCTTGGGGAATT+GGG - chr2.4:46868707-46868726 MS.gene057443:intron 35.0%
! TTGATATTAGCTTGGGGAAT+TGG - chr2.4:46868706-46868725 MS.gene057443:intron 35.0%
!! CAAGATTTTAACATCGTCAC+TGG + chr2.4:46870368-46870387 None:intergenic 35.0%
!! GCTGTCTTGTTTGTAATCAA+AGG + chr2.4:46869334-46869353 None:intergenic 35.0%
!!! AGAGGATTTGTTTTGTCTTC+TGG - chr2.4:46869001-46869020 MS.gene057443:intron 35.0%
!!! GAGGATTTGTTTTGTCTTCT+GGG - chr2.4:46869002-46869021 MS.gene057443:intron 35.0%
!!! TTGGGAGTTTTGATTAGAGA+GGG + chr2.4:46869417-46869436 None:intergenic 35.0%
!!! TTTGGGAGTTTTGATTAGAG+AGG + chr2.4:46869418-46869437 None:intergenic 35.0%
AGAAGATGGTTCGCATTTGA+TGG - chr2.4:46870591-46870610 MS.gene057443:intron 40.0%
AGCACTCCAAAACATGGAAA+CGG + chr2.4:46869707-46869726 None:intergenic 40.0%
AGGAATAGAGCCTTTGTCAT+CGG + chr2.4:46869375-46869394 None:intergenic 40.0%
CAAGTACCAAACAGTACAGT+GGG - chr2.4:46868666-46868685 MS.gene057443:intron 40.0%
CAATTGCAGCCACAATAGAA+AGG + chr2.4:46870144-46870163 None:intergenic 40.0%
CTTTCTATTGTGGCTGCAAT+TGG - chr2.4:46870142-46870161 MS.gene057443:intron 40.0%
GTGAGTAGTATCCTATGAAC+AGG + chr2.4:46870219-46870238 None:intergenic 40.0%
TACTACTCACAAAGTTGCAC+CGG - chr2.4:46870229-46870248 MS.gene057443:intron 40.0%
TCAAGAAAGTGAAGGCAAAC+GGG + chr2.4:46869084-46869103 None:intergenic 40.0%
TCAAGTACCAAACAGTACAG+TGG - chr2.4:46868665-46868684 MS.gene057443:intron 40.0%
TGCAGCATCGTTTCAAGAAA+TGG - chr2.4:46868630-46868649 MS.gene057443:CDS 40.0%
TTAAATTGCGACTGTGGTTG+CGG - chr2.4:46870022-46870041 MS.gene057443:intron 40.0%
TTATGCAGCACTCCAAAACA+TGG + chr2.4:46869713-46869732 None:intergenic 40.0%
TTCTATTGTGGCTGCAATTG+GGG - chr2.4:46870144-46870163 MS.gene057443:intron 40.0%
! AAAGTACCCACTGTACTGTT+TGG + chr2.4:46868675-46868694 None:intergenic 40.0%
! AGGGCAACATCTTGTCATTT+GGG + chr2.4:46869398-46869417 None:intergenic 40.0%
! GCATGTCTTATTGCATTCTG+TGG - chr2.4:46869739-46869758 MS.gene057443:CDS 40.0%
! TATATCTAGCTCAGGTCACA+AGG - chr2.4:46869675-46869694 MS.gene057443:intron 40.0%
!! ATTTTAACATCGTCACTGGG+TGG + chr2.4:46870364-46870383 None:intergenic 40.0%
!! GACATGATTTTGGGTGGTTT+TGG - chr2.4:46869574-46869593 MS.gene057443:intron 40.0%
!! TGTCATCCAGAAAGTGTTAG+CGG - chr2.4:46869046-46869065 MS.gene057443:intron 40.0%
!!! TGGTCACTTTTGCTTCTAAG+TGG - chr2.4:46870662-46870681 MS.gene057443:intron 40.0%
ACAAACAAGACAGCACTTCG+AGG - chr2.4:46869340-46869359 MS.gene057443:intron 45.0%
ACCCTCAACTTGAGATTTCC+GGG + chr2.4:46870713-46870732 None:intergenic 45.0%
CAAACAAGACAGCACTTCGA+GGG - chr2.4:46869341-46869360 MS.gene057443:intron 45.0%
CACCCTCAACTTGAGATTTC+CGG + chr2.4:46870714-46870733 None:intergenic 45.0%
CCAAAACATGGAAACGGTAC+CGG + chr2.4:46869701-46869720 None:intergenic 45.0%
GAGGGCAACATCTTGTCATT+TGG + chr2.4:46869399-46869418 None:intergenic 45.0%
GGAAGTTGGAAGCTCTGTTA+AGG - chr2.4:46870895-46870914 MS.gene057443:CDS 45.0%
GGAATAGAGCCTTTGTCATC+GGG + chr2.4:46869374-46869393 None:intergenic 45.0%
TCTGCTACTATTGCAGAAGC+TGG - chr2.4:46870871-46870890 MS.gene057443:CDS 45.0%
! ATCCCGGAAATCTCAAGTTG+AGG - chr2.4:46870708-46870727 MS.gene057443:CDS 45.0%
! GCAACATCTTGTCATTTGGG+AGG + chr2.4:46869395-46869414 None:intergenic 45.0%
! GGGTACTTGCAATCCCTTTT+CGG - chr2.4:46870298-46870317 MS.gene057443:intron 45.0%
! GTTGCTCATGTGGTTCTATC+TGG - chr2.4:46869464-46869483 MS.gene057443:intron 45.0%
!! TCCCGGAAATCTCAAGTTGA+GGG - chr2.4:46870709-46870728 MS.gene057443:CDS 45.0%
!!! AGGGAGTTTTGTTGCTCATG+TGG - chr2.4:46869454-46869473 MS.gene057443:intron 45.0%
CTGGGCCTATTGAAGAGGAT+TGG - chr2.4:46869020-46869039 MS.gene057443:intron 50.0%
GCGTTCGTGGTAGAACAAAC+TGG - chr2.4:46869278-46869297 MS.gene057443:intron 50.0%
GCTACTATTGCAGAAGCTGG+AGG - chr2.4:46870874-46870893 MS.gene057443:CDS 50.0%
GCTGATGTCGTGGTTGAACA+AGG - chr2.4:46869761-46869780 MS.gene057443:CDS 50.0%
GTCTTCTGGGCCTATTGAAG+AGG - chr2.4:46869015-46869034 MS.gene057443:intron 50.0%
TTGCAGAAGCTGGAGGAAGT+TGG - chr2.4:46870881-46870900 MS.gene057443:CDS 50.0%
TTGTGGTTTCAATGGCGTCG+CGG - chr2.4:46870106-46870125 MS.gene057443:intron 50.0%
! CCGGTACCGTTTCCATGTTT+TGG - chr2.4:46869698-46869717 MS.gene057443:intron 50.0%
CTAGTTGCGCGCAAGATACC+TGG - chr2.4:46869504-46869523 MS.gene057443:intron 55.0%
GCATTCTGTGGCTGATGTCG+TGG - chr2.4:46869751-46869770 MS.gene057443:CDS 55.0%
GGTCTGCTTCCCGATGACAA+AGG - chr2.4:46869362-46869381 MS.gene057443:intron 55.0%
! TCTAGCTCAGGTCACAAGGC+CGG - chr2.4:46869679-46869698 MS.gene057443:intron 55.0%
GCTGCGCCGCTAACACTTTC+TGG + chr2.4:46869055-46869074 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 46868553 46870940 46868553 ID=MS.gene057443
chr2.4 mRNA 46868553 46870940 46868553 ID=MS.gene057443.t1;Parent=MS.gene057443
chr2.4 exon 46870665 46870940 46870665 ID=MS.gene057443.t1.exon1;Parent=MS.gene057443.t1
chr2.4 CDS 46870665 46870940 46870665 ID=cds.MS.gene057443.t1;Parent=MS.gene057443.t1
chr2.4 exon 46869711 46869804 46869711 ID=MS.gene057443.t1.exon2;Parent=MS.gene057443.t1
chr2.4 CDS 46869711 46869804 46869711 ID=cds.MS.gene057443.t1;Parent=MS.gene057443.t1
chr2.4 exon 46869076 46869194 46869076 ID=MS.gene057443.t1.exon3;Parent=MS.gene057443.t1
chr2.4 CDS 46869076 46869194 46869076 ID=cds.MS.gene057443.t1;Parent=MS.gene057443.t1
chr2.4 exon 46868881 46868964 46868881 ID=MS.gene057443.t1.exon4;Parent=MS.gene057443.t1
chr2.4 CDS 46868881 46868964 46868881 ID=cds.MS.gene057443.t1;Parent=MS.gene057443.t1
chr2.4 exon 46868553 46868669 46868553 ID=MS.gene057443.t1.exon5;Parent=MS.gene057443.t1
chr2.4 CDS 46868553 46868669 46868553 ID=cds.MS.gene057443.t1;Parent=MS.gene057443.t1
Gene Sequence

>MS.gene057443

ATGGATGAAGTAGTGGAAATAGATACCTTAGAGAAGGGTTTATTGGAAGAAAATGAAGAAAACGAAGAAGTGTTATATGCAGCATCGTTTCAAGAAATGGAGAAGAATTTCATCAAGTACCAAACAGTACAGTGGGTACTTTACTCTCTGTTATTGATATTAGCTTGGGGAATTGGGTTACTCATGTTGCTTTATGTACCAGTTAGAAGGTTTATACTTAGAAAAGATATTCGTTCTAGAAGTCTTTACCTTACTCCAAATGCTATTGTTTATAAGGTATTCTTTTCTTCACTTTCCTACTATTTCTTTCAATTTATATTTTTTTATTTTTTTCTGTTGGGAATATTACTGGTATGGATTTGAGAGATTGTTAGTATAAGTTATATGAATTTTTGTTGTTGAAATTGGAAATTTGTTGTGATTATGATAAAATACATTAATATGTATAAGAGGATTTGTTTTGTCTTCTGGGCCTATTGAAGAGGATTGGTTTTGTCATCCAGAAAGTGTTAGCGGCGCAGCTTGTTGCCCGTTTGCCTTCACTTTCTTGATAAATTATTATAAATTATATATAAAAGAATTAAGCTCATTAAAAAGTTAATATGTATAATAAACTATGAATTTGTTATTGGAGCTGGGAGTTTGAACTTTGAGTTGAATGAGTTGAGAAGTTAAAGGGCCTCATGTTTAAATCCTAGTAAAAGATGTTAATATAGTAACATTTAGCGTTCGTGGTAGAACAAACTGGTATATTATTACTGAATATTGGGAACAATCCCCTTTGATTACAAACAAGACAGCACTTCGAGGGTCTGCTTCCCGATGACAAAGGCTCTATTCCTCCCAAATGACAAGATGTTGCCCTCTCTAATCAAAACTCCCAAATGGCATTAAACTTTTAAGGGAGTTTTGTTGCTCATGTGGTTCTATCTGGTTAGAGTGATAGTCTTTCTAGTTGCGCGCAAGATACCTGGTCTATATTCAAAAGGTAACTGCCTTTTATGATACATCACTCACTTTAGACATGATTTTGGGTGGTTTTGGCTTTGTACTGATTTTGATAACTTATGAATGTATTATATTTGCATGTATGGATCTCTTGACATGTAATAAGATCTGTGTTATATCTAGCTCAGGTCACAAGGCCGGTACCGTTTCCATGTTTTGGAGTGCTGCATAAAGAGAAGCATGTCTTATTGCATTCTGTGGCTGATGTCGTGGTTGAACAAGGTGCACTATTTGCTGTTTTCTTCTGTGTTCTTTAAGCTTTTGGACAACCCTTTTTTTATTTTTTTCAAGTACTAGTTTCATGCTATAAGATTTGGTAGATTTTATGCCTTACTTTTATTCTTCCAGCCTCATGTAATTATATAATTATGGCCCTCTGGTTGTAATTCCTAGTATATGATTAATTATATCTGTTCGTATGCTATTTACAATAGTTATGGGGTTTTAATTTCTAGCATTGTTTAAATTGCGACTGTGGTTGCGGTTACGTTGTGAACCTTTATATTGCCGCAACATGTAGGAAAATGAAATCCTTGCTGTCTAAATTGTGGTTTCAATGGCGTCGCGGAAAAATCAATATCCTTTCTATTGTGGCTGCAATTGGGGTTGCAAACCCTAATTTAAAACTATGATTTCTAGTATCTCATTAATTGTACCTGTTCATAGGATACTACTCACAAAGTTGCACCGGTTTTGTAGTTTAATTTCTAGTATCTGATTAATGATACTTGCTCATAGGGTACTTGCAATCCCTTTTCGGTGTATATTCTCTTAGAATTGAAAATGTTGGAGTTAGAAGGCCACCCAGTGACGATGTTAAAATCTTGGGAATTGCAAATCCTAATGCTTTCAAGAAGGTATTTGATTGTGCCTGATCAAATTGTGATTTTCTTTCTGTATTTCTTCATTCACTTTTGAATTGATGATATATGTTAAACTTCTTTTTTCTTTGCCTGGTTTCTTTTTAGGCTGTTATGATGCACCTATCAAACATGAGAAATGAGATTGTTTCAAGACATGTGTCTACATTAGAAGATGGTTCGCATTTGATGGTAAATCATTCGCCAATCCGAGAAGTATTCAATTTTTTCCTCTATATTTTGGTCACTTTTGCTTCTAAGTGGCCAATAATATAAGTCGTTTACTTATCCCGGAAATCTCAAGTTGAGGGTGTTGTCGTGTCGAGTATATTTTTAACTGCTGTTGTTCATGTTGGTTACTTATGATCTTTATCTTCTCGCTCACATTGTTTTGTCATTGTAGATGTCTCCATCCAAGTCATTGAGATATGATTCTACTCATTCTGAGGATCTGCTACTATTGCAGAAGCTGGAGGAAGTTGGAAGCTCTGTTAAGGTAGAAAGTAAACGCTGCATATAG
Protein sequence

>MS.gene057443.t1

MDEVVEIDTLEKGLLEENEENEEVLYAASFQEMEKNFIKYQTVQWVLYSLLLILAWGIGLLMLLYVPVRRFILRKDIRSRSLYLTPNAIVYKVTRPVPFPCFGVLHKEKHVLLHSVADVVVEQGYLQSLFGVYSLRIENVGVRRPPSDDVKILGIANPNAFKKAVMMHLSNMRNEIVSRHVSTLEDGSHLMMSPSKSLRYDSTHSEDLLLLQKLEEVGSSVKVESKRCI