Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065386.t1 | XP_003624490.2 | 62.8 | 156 | 34 | 2 | 1 | 132 | 402 | 557 | 2.10E-34 | 155.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065386.t1 | Q9LYU8 | 46.2 | 156 | 59 | 3 | 1 | 131 | 410 | 565 | 2.1e-19 | 96.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065386.t1 | G7KX84 | 62.8 | 156 | 34 | 2 | 1 | 132 | 402 | 557 | 1.5e-34 | 155.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene065386 | 0.802703 | 4.95E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene065386 | 0.806515 | 7.92E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene065386 | 0.812562 | 3.98E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065386.t1 | MTR_7g083920 | 82.051 | 156 | 4 | 2 | 1 | 132 | 295 | 450 | 1.05e-75 | 231 |
| MS.gene065386.t1 | MTR_7g083920 | 82.051 | 156 | 4 | 2 | 1 | 132 | 402 | 557 | 1.14e-74 | 231 |
| MS.gene065386.t1 | MTR_6g033260 | 64.474 | 152 | 29 | 3 | 1 | 128 | 404 | 554 | 7.41e-49 | 164 |
| MS.gene065386.t1 | MTR_6g033260 | 63.636 | 154 | 29 | 3 | 1 | 128 | 404 | 556 | 1.35e-48 | 163 |
| MS.gene065386.t1 | MTR_6g033260 | 69.524 | 105 | 12 | 1 | 1 | 85 | 404 | 508 | 9.13e-37 | 131 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065386.t1 | AT5G13280 | 63.462 | 156 | 32 | 3 | 1 | 131 | 410 | 565 | 1.90e-48 | 163 |
| MS.gene065386.t1 | AT3G02020 | 59.060 | 149 | 34 | 3 | 1 | 122 | 407 | 555 | 7.10e-44 | 150 |
| MS.gene065386.t1 | AT5G14060 | 63.235 | 136 | 24 | 2 | 1 | 110 | 406 | 541 | 1.60e-43 | 149 |
| MS.gene065386.t1 | AT5G14060 | 63.235 | 136 | 24 | 2 | 1 | 110 | 406 | 541 | 1.60e-43 | 149 |
Find 22 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGGCCTTTCAAGTTCT+TGG | 0.229855 | 7.4:-23156146 | MS.gene065386:intron |
| GTTTCCAATAAGAGAGATTA+TGG | 0.267691 | 7.4:+23156508 | None:intergenic |
| AGATCCATAATCTCTCTTAT+TGG | 0.284492 | 7.4:-23156512 | MS.gene065386:CDS |
| AATGAATCCATACCTGAAAA+TGG | 0.329910 | 7.4:-23154603 | MS.gene065386:CDS |
| TTTAGGCATATCAATTGATA+TGG | 0.338260 | 7.4:-23157118 | MS.gene065386:CDS |
| TCAGATGTCGTCACTGATAC+TGG | 0.365559 | 7.4:-23156483 | MS.gene065386:CDS |
| TTTCAAGTTCTTGGATCCCT+TGG | 0.372283 | 7.4:-23156137 | MS.gene065386:CDS |
| CCCGCATGCTTGGTGCGGTT+GGG | 0.373066 | 7.4:-23157254 | None:intergenic |
| TGACTATGTTGTTGAAGAAC+TGG | 0.392763 | 7.4:-23156567 | MS.gene065386:CDS |
| ACCCGCATGCTTGGTGCGGT+TGG | 0.395178 | 7.4:-23157255 | None:intergenic |
| TCTGTTCGTACATTATCTTA+AGG | 0.426617 | 7.4:-23154579 | None:intergenic |
| CAATGTTCAAATGATTTCTC+AGG | 0.458977 | 7.4:-23156111 | MS.gene065386:intron |
| TGCGGTTGGGTTCCTTGCTA+AGG | 0.471236 | 7.4:-23157241 | MS.gene065386:intron |
| ATTGTAAGCACCCGCATGCT+TGG | 0.497902 | 7.4:-23157264 | None:intergenic |
| ACGAAGCAGAGCAGTCTGTC+AGG | 0.511744 | 7.4:-23154674 | MS.gene065386:CDS |
| CACAAAATCTTCTTTGAGTG+TGG | 0.514746 | 7.4:-23154645 | MS.gene065386:CDS |
| AAGGGATCCAAGAACTTGAA+AGG | 0.580115 | 7.4:+23156139 | None:intergenic |
| GTCGTCACTGATACTGGAGA+AGG | 0.617116 | 7.4:-23156477 | MS.gene065386:intron |
| AAGCACCCGCATGCTTGGTG+CGG | 0.646180 | 7.4:-23157259 | None:intergenic |
| TCATTTGAACATTGACACCA+AGG | 0.650137 | 7.4:+23156120 | None:intergenic |
| CATTTGAACATTGACACCAA+GGG | 0.662883 | 7.4:+23156121 | None:intergenic |
| TGATATGGTAGCTACAAGTG+AGG | 0.705689 | 7.4:-23157103 | MS.gene065386:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTATTTTTTTTTT+TGG | - | chr7.4:23155889-23155908 | MS.gene065386:intron | 0.0% |
| !! | AAAAAAAAAAAAATTCCTAA+TGG | + | chr7.4:23155876-23155895 | None:intergenic | 10.0% |
| !! | AAAATGCCAGTAAATAAAAA+GGG | + | chr7.4:23155663-23155682 | None:intergenic | 20.0% |
| !! | AACTCAACAAAATAATGAAT+GGG | + | chr7.4:23154824-23154843 | None:intergenic | 20.0% |
| !! | GTTACAATTCAATATAACAT+TGG | + | chr7.4:23156911-23156930 | None:intergenic | 20.0% |
| !! | TAAAATGCCAGTAAATAAAA+AGG | + | chr7.4:23155664-23155683 | None:intergenic | 20.0% |
| !! | TAAGAATATTACATTCATGT+TGG | + | chr7.4:23156950-23156969 | None:intergenic | 20.0% |
| !! | TAAGGTAAGAAAATAAATGA+CGG | - | chr7.4:23154607-23154626 | MS.gene065386:CDS | 20.0% |
| !! | TTATATTGAATTGTAACGTT+GGG | - | chr7.4:23156914-23156933 | MS.gene065386:intron | 20.0% |
| !!! | AGATTATGGATCTATTTTTA+AGG | + | chr7.4:23155311-23155330 | None:intergenic | 20.0% |
| !!! | ATTTATTCATATGCTGATTT+TGG | + | chr7.4:23155575-23155594 | None:intergenic | 20.0% |
| !!! | TAAGTTGTTAATTTTAGACT+TGG | - | chr7.4:23156968-23156987 | MS.gene065386:intron | 20.0% |
| !!! | TTTTCAAATTTTGCAATATG+AGG | - | chr7.4:23154885-23154904 | MS.gene065386:intron | 20.0% |
| !!! | TTTTCAATCTTTGAAGATTT+AGG | - | chr7.4:23154695-23154714 | MS.gene065386:CDS | 20.0% |
| ! | AAAATAATGAATGGGAGTAA+CGG | + | chr7.4:23154816-23154835 | None:intergenic | 25.0% |
| ! | ACAATTCAATATAACATTGG+AGG | + | chr7.4:23156908-23156927 | None:intergenic | 25.0% |
| ! | AGATAACAACAATGATCAAA+TGG | - | chr7.4:23156501-23156520 | MS.gene065386:CDS | 25.0% |
| ! | CTTGATCAAAGTTTATAACA+AGG | + | chr7.4:23156271-23156290 | None:intergenic | 25.0% |
| ! | CTTTGATAAGAATTAAGATG+AGG | - | chr7.4:23156127-23156146 | MS.gene065386:CDS | 25.0% |
| ! | GAACTCAACAAAATAATGAA+TGG | + | chr7.4:23154825-23154844 | None:intergenic | 25.0% |
| ! | GTTATATTGAATTGTAACGT+TGG | - | chr7.4:23156913-23156932 | MS.gene065386:intron | 25.0% |
| ! | TAATTAAAATAAGCATGACC+TGG | - | chr7.4:23154929-23154948 | MS.gene065386:intron | 25.0% |
| ! | TTAAGATGAGGAAAAGAAAA+AGG | - | chr7.4:23156096-23156115 | MS.gene065386:intron | 25.0% |
| ! | TTGACTTCACAAATAATTGA+AGG | + | chr7.4:23154851-23154870 | None:intergenic | 25.0% |
| ! | TTTAGGCATATCAATTGATA+TGG | - | chr7.4:23154712-23154731 | MS.gene065386:intron | 25.0% |
| !! | AAATTCTGTGCTTTGTTAAA+TGG | - | chr7.4:23155591-23155610 | MS.gene065386:intron | 25.0% |
| !! | AAGTAATGACATTTGAAATC+AGG | - | chr7.4:23157025-23157044 | MS.gene065386:intron | 25.0% |
| !! | ATAGAGATAGTGTTGAAATT+TGG | - | chr7.4:23156197-23156216 | MS.gene065386:intron | 25.0% |
| !! | CATTAACATATTTTGCATGT+AGG | - | chr7.4:23156755-23156774 | MS.gene065386:intron | 25.0% |
| !! | TAAAACACATTTTTACCACT+CGG | - | chr7.4:23156874-23156893 | MS.gene065386:intron | 25.0% |
| !! | TAGAGATAGTGTTGAAATTT+GGG | - | chr7.4:23156198-23156217 | MS.gene065386:intron | 25.0% |
| !! | TTTAGATATTTGGTAGTAGA+AGG | + | chr7.4:23155802-23155821 | None:intergenic | 25.0% |
| !!! | AACACTATCTCTATTTCTAT+TGG | + | chr7.4:23156191-23156210 | None:intergenic | 25.0% |
| !!! | ATCTCTATTTCTATTGGATT+TGG | + | chr7.4:23156185-23156204 | None:intergenic | 25.0% |
| !!! | GATATGATTTTTGTTGATGA+TGG | - | chr7.4:23155516-23155535 | MS.gene065386:intron | 25.0% |
| !!! | TTGTTGTTTGTTTGTTAGAA+AGG | + | chr7.4:23156438-23156457 | None:intergenic | 25.0% |
| !!! | TTTATTTTCTTACCTTAGCA+AGG | + | chr7.4:23154604-23154623 | None:intergenic | 25.0% |
| !!! | TTTTGTTATTGATTTCCTGA+TGG | - | chr7.4:23155113-23155132 | MS.gene065386:intron | 25.0% |
| AATGAATCCATACCTGAAAA+TGG | - | chr7.4:23157227-23157246 | MS.gene065386:intron | 30.0% | |
| ACATAGTCCTTAAACTTCTT+AGG | - | chr7.4:23156526-23156545 | MS.gene065386:CDS | 30.0% | |
| AGAACTGGAAAAAATTTCTG+TGG | - | chr7.4:23155278-23155297 | MS.gene065386:intron | 30.0% | |
| AGAATTTAACATTGGTGGAA+TGG | - | chr7.4:23155043-23155062 | MS.gene065386:intron | 30.0% | |
| AGATCCATAATCTCTCTTAT+TGG | - | chr7.4:23155318-23155337 | MS.gene065386:intron | 30.0% | |
| AGTGATATTATAGCATCTCT+AGG | + | chr7.4:23155455-23155474 | None:intergenic | 30.0% | |
| CAATGTTCAAATGATTTCTC+AGG | - | chr7.4:23155719-23155738 | MS.gene065386:intron | 30.0% | |
| CAGTGATGAATTATGAATGA+CGG | + | chr7.4:23156798-23156817 | None:intergenic | 30.0% | |
| CATAAAAGGATTTATCCACA+AGG | + | chr7.4:23154647-23154666 | None:intergenic | 30.0% | |
| CTTCACAAATAATTGAAGGA+AGG | + | chr7.4:23154847-23154866 | None:intergenic | 30.0% | |
| GATCAAAGTTTATAACAAGG+AGG | + | chr7.4:23156268-23156287 | None:intergenic | 30.0% | |
| GTTTCCAATAAGAGAGATTA+TGG | + | chr7.4:23155325-23155344 | None:intergenic | 30.0% | |
| TCATGTTTCCATATTTATGC+AGG | - | chr7.4:23154670-23154689 | MS.gene065386:CDS | 30.0% | |
| TCATTTGGCTAACATGAAAA+GGG | + | chr7.4:23155935-23155954 | None:intergenic | 30.0% | |
| TGAAAACACCTGCATAAATA+TGG | + | chr7.4:23154681-23154700 | None:intergenic | 30.0% | |
| TGGAAACATGAAGACATAAA+AGG | + | chr7.4:23154661-23154680 | None:intergenic | 30.0% | |
| TGTGAATATACCTCTGTTAT+AGG | - | chr7.4:23156038-23156057 | MS.gene065386:intron | 30.0% | |
| TGTTATCTTATAAGACCATC+AGG | + | chr7.4:23155131-23155150 | None:intergenic | 30.0% | |
| TTCATTTGGCTAACATGAAA+AGG | + | chr7.4:23155936-23155955 | None:intergenic | 30.0% | |
| TTGCAATATGAGGCTATTAT+GGG | - | chr7.4:23154895-23154914 | MS.gene065386:intron | 30.0% | |
| TTTGCAATATGAGGCTATTA+TGG | - | chr7.4:23154894-23154913 | MS.gene065386:intron | 30.0% | |
| ! | AACATATTTTGCATGTAGGA+GGG | - | chr7.4:23156759-23156778 | MS.gene065386:intron | 30.0% |
| ! | AGAGATAGTGTTGAAATTTG+GGG | - | chr7.4:23156199-23156218 | MS.gene065386:intron | 30.0% |
| ! | ATTTACTGGCATTTTATTGC+AGG | - | chr7.4:23155668-23155687 | MS.gene065386:intron | 30.0% |
| ! | GTTGTTAATTTTAGACTTGG+AGG | - | chr7.4:23156971-23156990 | MS.gene065386:intron | 30.0% |
| ! | TAACATATTTTGCATGTAGG+AGG | - | chr7.4:23156758-23156777 | MS.gene065386:intron | 30.0% |
| ! | TTAATTTTAGACTTGGAGGT+TGG | - | chr7.4:23156975-23156994 | MS.gene065386:intron | 30.0% |
| ! | TTTTCCTCATCTTAATTCTC+AGG | + | chr7.4:23156091-23156110 | None:intergenic | 30.0% |
| ! | TTTTGTTCCTGTTTGTTTCA+CGG | - | chr7.4:23157102-23157121 | MS.gene065386:intron | 30.0% |
| !! | AAATGTGTTTTAAGCTTGAC+TGG | + | chr7.4:23156866-23156885 | None:intergenic | 30.0% |
| !! | AAGCACTGAGAATTTAACAT+TGG | - | chr7.4:23155035-23155054 | MS.gene065386:intron | 30.0% |
| !! | ATATGGTCTTGTATTAGACT+TGG | - | chr7.4:23156722-23156741 | MS.gene065386:intron | 30.0% |
| !!! | AAATGGCATTTTTCAAGCAT+CGG | - | chr7.4:23155608-23155627 | MS.gene065386:intron | 30.0% |
| !!! | AATTCATCACTGGTTTTTGT+TGG | - | chr7.4:23156806-23156825 | MS.gene065386:intron | 30.0% |
| AAAAGGATTTATCCACAAGG+AGG | + | chr7.4:23154644-23154663 | None:intergenic | 35.0% | |
| AACAACACAATCCCATTAGA+TGG | + | chr7.4:23155094-23155113 | None:intergenic | 35.0% | |
| AACCCTTGCGTAATTCTAAT+CGG | - | chr7.4:23155211-23155230 | MS.gene065386:intron | 35.0% | |
| AATGGCGATGATCAATTAGA+AGG | + | chr7.4:23155858-23155877 | None:intergenic | 35.0% | |
| ACAACACAATCCCATTAGAT+GGG | + | chr7.4:23155093-23155112 | None:intergenic | 35.0% | |
| ACACTATGATACAAGCAAAG+AGG | + | chr7.4:23156620-23156639 | None:intergenic | 35.0% | |
| AGTGTCAGATGATACTGAAA+TGG | - | chr7.4:23155984-23156003 | MS.gene065386:intron | 35.0% | |
| ATGATGGCATTTGATTCCTT+AGG | - | chr7.4:23155532-23155551 | MS.gene065386:intron | 35.0% | |
| ATGTAGTATCTCCCATCTAA+TGG | - | chr7.4:23155079-23155098 | MS.gene065386:intron | 35.0% | |
| CACAAAATCTTCTTTGAGTG+TGG | - | chr7.4:23157185-23157204 | MS.gene065386:intron | 35.0% | |
| CACTGAGAATTTAACATTGG+TGG | - | chr7.4:23155038-23155057 | MS.gene065386:intron | 35.0% | |
| CATTTGAACATTGACACCAA+GGG | + | chr7.4:23155712-23155731 | None:intergenic | 35.0% | |
| CATTTGGCTAACATGAAAAG+GGG | + | chr7.4:23155934-23155953 | None:intergenic | 35.0% | |
| CGTCATTCATAATTCATCAC+TGG | - | chr7.4:23156796-23156815 | MS.gene065386:intron | 35.0% | |
| CTTTGCTTGTATCATAGTGT+CGG | - | chr7.4:23156620-23156639 | MS.gene065386:intron | 35.0% | |
| GATACAAGCAAAGAGGAAAT+GGG | + | chr7.4:23156613-23156632 | None:intergenic | 35.0% | |
| GATTTCCAACAGATAGTACA+TGG | - | chr7.4:23156412-23156431 | MS.gene065386:intron | 35.0% | |
| TCATTTGAACATTGACACCA+AGG | + | chr7.4:23155713-23155732 | None:intergenic | 35.0% | |
| TCTAATTGATCATCGCCATT+AGG | - | chr7.4:23155858-23155877 | MS.gene065386:intron | 35.0% | |
| TGACAAGCCTAAGAAGTTTA+AGG | + | chr7.4:23156536-23156555 | None:intergenic | 35.0% | |
| TGACTATGTTGTTGAAGAAC+TGG | - | chr7.4:23155263-23155282 | MS.gene065386:intron | 35.0% | |
| TGATACAAGCAAAGAGGAAA+TGG | + | chr7.4:23156614-23156633 | None:intergenic | 35.0% | |
| TGTAGTATCTCCCATCTAAT+GGG | - | chr7.4:23155080-23155099 | MS.gene065386:intron | 35.0% | |
| ! | AGATATTTGGTAGTAGAAGG+AGG | + | chr7.4:23155799-23155818 | None:intergenic | 35.0% |
| ! | CACACTCAAAGAAGATTTTG+TGG | + | chr7.4:23157187-23157206 | None:intergenic | 35.0% |
| ! | CACTAGCAATGACTTGTATA+TGG | - | chr7.4:23156705-23156724 | MS.gene065386:intron | 35.0% |
| ! | GAGATAGTGTTGAAATTTGG+GGG | - | chr7.4:23156200-23156219 | MS.gene065386:intron | 35.0% |
| ! | GATATTTGGTAGTAGAAGGA+GGG | + | chr7.4:23155798-23155817 | None:intergenic | 35.0% |
| !! | GCTTTGCCCTTTTTATTTAC+TGG | - | chr7.4:23155654-23155673 | MS.gene065386:intron | 35.0% |
| !!! | AACAGAACCATTTTCAGGTA+TGG | + | chr7.4:23157237-23157256 | None:intergenic | 35.0% |
| !!! | TTTTTCAAGCATCGGTTGAT+TGG | - | chr7.4:23155616-23155635 | MS.gene065386:intron | 35.0% |
| AAAGGCCATGTACTATCTGT+TGG | + | chr7.4:23156420-23156439 | None:intergenic | 40.0% | |
| AACACTTCAAGTCACAAGAG+TGG | + | chr7.4:23156671-23156690 | None:intergenic | 40.0% | |
| AAGCCAACATAAGGCAACTA+GGG | - | chr7.4:23156336-23156355 | MS.gene065386:intron | 40.0% | |
| AAGGGATCCAAGAACTTGAA+AGG | + | chr7.4:23155694-23155713 | None:intergenic | 40.0% | |
| ACCTAGCTGACACTTTCATT+TGG | + | chr7.4:23155950-23155969 | None:intergenic | 40.0% | |
| ACCTCCTGAGAATTAAGATG+AGG | - | chr7.4:23156084-23156103 | MS.gene065386:intron | 40.0% | |
| ACTCTTGTGACTTGAAGTGT+TGG | - | chr7.4:23156670-23156689 | MS.gene065386:intron | 40.0% | |
| AGCCGATTAGAATTACGCAA+GGG | + | chr7.4:23155216-23155235 | None:intergenic | 40.0% | |
| ATAGTCAAGTTCCTGGAAAG+AGG | + | chr7.4:23155250-23155269 | None:intergenic | 40.0% | |
| CAACAACATAGTCAAGTTCC+TGG | + | chr7.4:23155257-23155276 | None:intergenic | 40.0% | |
| CAGTTCATCAATAACTGGCT+GGG | + | chr7.4:23154976-23154995 | None:intergenic | 40.0% | |
| CATGCAAATAACCGATGTCT+TGG | + | chr7.4:23155000-23155019 | None:intergenic | 40.0% | |
| CTCAAAGACAAGCCAACATA+AGG | - | chr7.4:23156327-23156346 | MS.gene065386:intron | 40.0% | |
| CTTGTATTAGACTTGGCATG+TGG | - | chr7.4:23156729-23156748 | MS.gene065386:intron | 40.0% | |
| GATTTATCCACAAGGAGGAT+AGG | + | chr7.4:23154639-23154658 | None:intergenic | 40.0% | |
| GGTTAGTATTTCCTTGACGT+TGG | - | chr7.4:23154748-23154767 | MS.gene065386:intron | 40.0% | |
| TAAAATAAGCATGACCTGGC+TGG | - | chr7.4:23154933-23154952 | MS.gene065386:intron | 40.0% | |
| TCCTCATCTTAATTCTCAGG+AGG | + | chr7.4:23156088-23156107 | None:intergenic | 40.0% | |
| TGAACTCTGTCCTATAACAG+AGG | + | chr7.4:23156051-23156070 | None:intergenic | 40.0% | |
| TGATATGGTAGCTACAAGTG+AGG | - | chr7.4:23154727-23154746 | MS.gene065386:intron | 40.0% | |
| TGATTTCTCAGGTGCATCTA+AGG | - | chr7.4:23155730-23155749 | MS.gene065386:intron | 40.0% | |
| TTGGCCAGTTCATCAATAAC+TGG | + | chr7.4:23154981-23155000 | None:intergenic | 40.0% | |
| ! | GTACGAACAGAACCATTTTC+AGG | + | chr7.4:23157242-23157261 | None:intergenic | 40.0% |
| ! | GTCATTCTTTTCCTCTTTCC+AGG | - | chr7.4:23155236-23155255 | MS.gene065386:intron | 40.0% |
| ! | TGATACTGAAATGGAGTGTC+TGG | - | chr7.4:23155993-23156012 | MS.gene065386:intron | 40.0% |
| !! | AAATGAAAGTGTCAGCTAGG+TGG | - | chr7.4:23155949-23155968 | MS.gene065386:intron | 40.0% |
| !! | ATGTTGGCTTGTCTTTGAGA+GGG | + | chr7.4:23156326-23156345 | None:intergenic | 40.0% |
| !! | ATTGGTGGAATGGTGTCATT+TGG | - | chr7.4:23155053-23155072 | MS.gene065386:intron | 40.0% |
| !! | TATGTTGGCTTGTCTTTGAG+AGG | + | chr7.4:23156327-23156346 | None:intergenic | 40.0% |
| !! | TTTCAAGTTCTTGGATCCCT+TGG | - | chr7.4:23155693-23155712 | MS.gene065386:intron | 40.0% |
| !!! | TGGTTTTGGAAGGATGAGTT+AGG | + | chr7.4:23156226-23156245 | None:intergenic | 40.0% |
| AGCCAACATAAGGCAACTAG+GGG | - | chr7.4:23156337-23156356 | MS.gene065386:intron | 45.0% | |
| AGCTTCCTATCTAACCGATG+TGG | - | chr7.4:23156289-23156308 | MS.gene065386:intron | 45.0% | |
| AGGCTTGTCAATTGCTCTCT+TGG | - | chr7.4:23156546-23156565 | MS.gene065386:CDS | 45.0% | |
| CAAGCCAACATAAGGCAACT+AGG | - | chr7.4:23156335-23156354 | MS.gene065386:intron | 45.0% | |
| CAGCCGATTAGAATTACGCA+AGG | + | chr7.4:23155217-23155236 | None:intergenic | 45.0% | |
| CATATCCCCAAGACAGAAAG+CGG | + | chr7.4:23155502-23155521 | None:intergenic | 45.0% | |
| CCAGCCAGTTATTGATGAAC+TGG | - | chr7.4:23154974-23154993 | MS.gene065386:intron | 45.0% | |
| CCAGTTCATCAATAACTGGC+TGG | + | chr7.4:23154977-23154996 | None:intergenic | 45.0% | |
| CCTTCCAAAACCAGCTTGAA+AGG | - | chr7.4:23156233-23156252 | MS.gene065386:intron | 45.0% | |
| GCTTCCTATCTAACCGATGT+GGG | - | chr7.4:23156290-23156309 | MS.gene065386:intron | 45.0% | |
| TAACCTGCCGTGAAACAAAC+AGG | + | chr7.4:23157112-23157131 | None:intergenic | 45.0% | |
| TCAGATGTCGTCACTGATAC+TGG | - | chr7.4:23155347-23155366 | MS.gene065386:intron | 45.0% | |
| TGATGAACTGGCCAAGACAT+CGG | - | chr7.4:23154986-23155005 | MS.gene065386:intron | 45.0% | |
| ! | AGCGTTTAAAACTACCAGCC+AGG | + | chr7.4:23154950-23154969 | None:intergenic | 45.0% |
| ! | TAGTCCCACATCGGTTAGAT+AGG | + | chr7.4:23156297-23156316 | None:intergenic | 45.0% |
| !! | CTGATTTTGGCAATGCCCAA+AGG | + | chr7.4:23155562-23155581 | None:intergenic | 45.0% |
| !! | GCCAAATGAAAGTGTCAGCT+AGG | - | chr7.4:23155946-23155965 | MS.gene065386:intron | 45.0% |
| !! | TGCACCTTTCAAGCTGGTTT+TGG | + | chr7.4:23156240-23156259 | None:intergenic | 45.0% |
| !! | TTGCAGGCCTTTCAAGTTCT+TGG | - | chr7.4:23155684-23155703 | MS.gene065386:intron | 45.0% |
| !!! | CCTTTCAAGCTGGTTTTGGA+AGG | + | chr7.4:23156236-23156255 | None:intergenic | 45.0% |
| !! | AAAAATTATTAATTAATGTA+AGG | - | chr7.4:23155821-23155840 | MS.gene065386:intron | 5.0% |
| !!! | TAATAATTTTTTTAGATATT+TGG | + | chr7.4:23155812-23155831 | None:intergenic | 5.0% |
| AAGACAGAAAGCGGATGGGA+GGG | + | chr7.4:23155493-23155512 | None:intergenic | 50.0% | |
| CTAGGGGCAGATCGCAATTA+AGG | - | chr7.4:23156353-23156372 | MS.gene065386:intron | 50.0% | |
| GGGCAGATCGCAATTAAGGT+GGG | - | chr7.4:23156357-23156376 | MS.gene065386:intron | 50.0% | |
| GGTAGTAGAAGGAGGGTTGA+GGG | + | chr7.4:23155791-23155810 | None:intergenic | 50.0% | |
| GTCGGACACGAACACATATC+AGG | - | chr7.4:23156638-23156657 | MS.gene065386:intron | 50.0% | |
| GTCGTCACTGATACTGGAGA+AGG | - | chr7.4:23155353-23155372 | MS.gene065386:intron | 50.0% | |
| GTTCCTGTTTGTTTCACGGC+AGG | - | chr7.4:23157106-23157125 | MS.gene065386:CDS | 50.0% | |
| GTTGACACCTATCCTCCTTG+TGG | - | chr7.4:23154629-23154648 | MS.gene065386:CDS | 50.0% | |
| TCCCATCCGCTTTCTGTCTT+GGG | - | chr7.4:23155493-23155512 | MS.gene065386:intron | 50.0% | |
| TGCCCCTAGTTGCCTTATGT+TGG | + | chr7.4:23156342-23156361 | None:intergenic | 50.0% | |
| TGGTAGTAGAAGGAGGGTTG+AGG | + | chr7.4:23155792-23155811 | None:intergenic | 50.0% | |
| ! | GGGTGGATTTAGTCCCACAT+CGG | + | chr7.4:23156306-23156325 | None:intergenic | 50.0% |
| !! | GATTCCTTAGGAGCGCCTTT+GGG | - | chr7.4:23155544-23155563 | MS.gene065386:intron | 50.0% |
| !! | TGATTCCTTAGGAGCGCCTT+TGG | - | chr7.4:23155543-23155562 | MS.gene065386:intron | 50.0% |
| !! | TTGGCTTGTCTTTGAGAGGG+TGG | + | chr7.4:23156323-23156342 | None:intergenic | 50.0% |
| ACGAAGCAGAGCAGTCTGTC+AGG | - | chr7.4:23157156-23157175 | MS.gene065386:intron | 55.0% | |
| ACGTTGGATCCGTCAAGCTG+TGG | - | chr7.4:23154764-23154783 | MS.gene065386:intron | 55.0% | |
| CAAGACAGAAAGCGGATGGG+AGG | + | chr7.4:23155494-23155513 | None:intergenic | 55.0% | |
| CCCATCCGCTTTCTGTCTTG+GGG | - | chr7.4:23155494-23155513 | MS.gene065386:intron | 55.0% | |
| CCCCAAGACAGAAAGCGGAT+GGG | + | chr7.4:23155497-23155516 | None:intergenic | 55.0% | |
| CTCCCATCCGCTTTCTGTCT+TGG | - | chr7.4:23155492-23155511 | MS.gene065386:intron | 55.0% | |
| CTCTCTGCTCCACAGCTTGA+CGG | + | chr7.4:23154776-23154795 | None:intergenic | 55.0% | |
| GATGGGAGGGACAGAACAGA+AGG | + | chr7.4:23155480-23155499 | None:intergenic | 55.0% | |
| GCACTCTGCACCTTTCAAGC+TGG | + | chr7.4:23156246-23156265 | None:intergenic | 55.0% | |
| GCTGTGTTGAAGAGCAAGCC+AGG | + | chr7.4:23156591-23156610 | None:intergenic | 55.0% | |
| GGGGCAGATCGCAATTAAGG+TGG | - | chr7.4:23156356-23156375 | MS.gene065386:intron | 55.0% | |
| TCCCCAAGACAGAAAGCGGA+TGG | + | chr7.4:23155498-23155517 | None:intergenic | 55.0% | |
| TGCGGTTGGGTTCCTTGCTA+AGG | - | chr7.4:23154589-23154608 | MS.gene065386:CDS | 55.0% | |
| TTGGAGGTCACATTGCCGAG+TGG | + | chr7.4:23156892-23156911 | None:intergenic | 55.0% | |
| TTGGTCCTCTCGATCCCGTT+GGG | - | chr7.4:23156565-23156584 | MS.gene065386:CDS | 55.0% | |
| ! | GCTTGACGGATCCAACGTCA+AGG | + | chr7.4:23154762-23154781 | None:intergenic | 55.0% |
| !! | AATGCCCAAAGGCGCTCCTA+AGG | + | chr7.4:23155551-23155570 | None:intergenic | 55.0% |
| AACACACACCCTCACGCTCG+GGG | - | chr7.4:23156386-23156405 | MS.gene065386:intron | 60.0% | |
| AAGAGCAAGCCAGGCCCAAC+GGG | + | chr7.4:23156582-23156601 | None:intergenic | 60.0% | |
| CAACACACACCCTCACGCTC+GGG | - | chr7.4:23156385-23156404 | MS.gene065386:intron | 60.0% | |
| CCAACACACACCCTCACGCT+CGG | - | chr7.4:23156384-23156403 | MS.gene065386:intron | 60.0% | |
| CTTGGTCCTCTCGATCCCGT+TGG | - | chr7.4:23156564-23156583 | MS.gene065386:CDS | 60.0% | |
| GAAGAGCAAGCCAGGCCCAA+CGG | + | chr7.4:23156583-23156602 | None:intergenic | 60.0% | |
| AAATCCCGCCCCGAGCGTGA+GGG | + | chr7.4:23156397-23156416 | None:intergenic | 65.0% | |
| ! | CCGAGCGTGAGGGTGTGTGT+TGG | + | chr7.4:23156387-23156406 | None:intergenic | 65.0% |
| ACACACCCTCACGCTCGGGG+CGG | - | chr7.4:23156389-23156408 | MS.gene065386:intron | 70.0% | |
| CCAGGCCCAACGGGATCGAG+AGG | + | chr7.4:23156573-23156592 | None:intergenic | 70.0% | |
| CCTCTCGATCCCGTTGGGCC+TGG | - | chr7.4:23156570-23156589 | MS.gene065386:CDS | 70.0% | |
| GAAATCCCGCCCCGAGCGTG+AGG | + | chr7.4:23156398-23156417 | None:intergenic | 70.0% | |
| CACACCCTCACGCTCGGGGC+GGG | - | chr7.4:23156390-23156409 | MS.gene065386:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 23154581 | 23157271 | 23154581 | ID=MS.gene065386 |
| chr7.4 | mRNA | 23154581 | 23157271 | 23154581 | ID=MS.gene065386.t1;Parent=MS.gene065386 |
| chr7.4 | exon | 23157242 | 23157271 | 23157242 | ID=MS.gene065386.t1.exon1;Parent=MS.gene065386.t1 |
| chr7.4 | CDS | 23157242 | 23157271 | 23157242 | ID=cds.MS.gene065386.t1;Parent=MS.gene065386.t1 |
| chr7.4 | exon | 23157104 | 23157160 | 23157104 | ID=MS.gene065386.t1.exon2;Parent=MS.gene065386.t1 |
| chr7.4 | CDS | 23157104 | 23157160 | 23157104 | ID=cds.MS.gene065386.t1;Parent=MS.gene065386.t1 |
| chr7.4 | exon | 23156478 | 23156594 | 23156478 | ID=MS.gene065386.t1.exon3;Parent=MS.gene065386.t1 |
| chr7.4 | CDS | 23156478 | 23156594 | 23156478 | ID=cds.MS.gene065386.t1;Parent=MS.gene065386.t1 |
| chr7.4 | exon | 23156112 | 23156162 | 23156112 | ID=MS.gene065386.t1.exon4;Parent=MS.gene065386.t1 |
| chr7.4 | CDS | 23156112 | 23156162 | 23156112 | ID=cds.MS.gene065386.t1;Parent=MS.gene065386.t1 |
| chr7.4 | exon | 23154581 | 23154724 | 23154581 | ID=MS.gene065386.t1.exon5;Parent=MS.gene065386.t1 |
| chr7.4 | CDS | 23154581 | 23154724 | 23154581 | ID=cds.MS.gene065386.t1;Parent=MS.gene065386.t1 |
| Gene Sequence |
| Protein sequence |
