AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene050442


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050442.t1 MTR_7g109870 99.307 433 3 0 1 433 1 433 0.0 893
MS.gene050442.t1 MTR_7g109870 98.398 437 3 1 1 433 1 437 0.0 886
MS.gene050442.t1 MTR_1g086590 69.340 424 102 4 1 412 1 408 0.0 583
MS.gene050442.t1 MTR_1g086590 69.340 424 102 4 1 412 1 408 0.0 582
MS.gene050442.t1 MTR_1g086590 70.529 397 97 3 1 393 1 381 0.0 557
MS.gene050442.t1 MTR_1g086590 68.732 339 86 3 1 335 1 323 1.45e-162 461
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene050442.t1 AT2G47210 69.841 441 120 6 2 433 5 441 0.0 607
MS.gene050442.t1 AT2G47210 69.841 441 120 6 2 433 5 441 0.0 607
MS.gene050442.t1 AT2G47210 69.841 441 120 6 2 433 5 441 0.0 607

Find 100 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATACCAATATACCTGTTTC+TGG 0.156332 7.1:-4668730 None:intergenic
ATTCCCGATTCGTTGAATTT+TGG 0.213340 7.1:+4669152 MS.gene050442:CDS
CTTGCCAGGGCTGCATCTTC+CGG 0.253582 7.1:+4665895 MS.gene050442:CDS
TTTCTCTTGTTGTCTTGTTT+GGG 0.260220 7.1:-4666154 None:intergenic
ATTTCTTGTGAAACATTATA+TGG 0.283878 7.1:-4666099 None:intergenic
TCGGACTGTAGAGGAGTTAA+AGG 0.299488 7.1:+4665657 MS.gene050442:CDS
TTTGACTTCACCTTAATGAT+AGG 0.315672 7.1:-4665934 None:intergenic
TTGCCAGGGCTGCATCTTCC+GGG 0.316334 7.1:+4665896 MS.gene050442:CDS
AGGCGAAAGGGTTGGCAAAA+AGG 0.324610 7.1:+4669279 MS.gene050442:intron
TGCAACACATCCTATCATTA+AGG 0.347399 7.1:+4665924 MS.gene050442:CDS
ATGGACGCGAAGGATATTCT+TGG 0.347443 7.1:+4664326 MS.gene050442:CDS
ATCATCTTTACGAGCAGAAT+TGG 0.368961 7.1:-4664809 None:intergenic
CACAAGAAATGGAGCGAAAA+CGG 0.373448 7.1:+4666112 MS.gene050442:CDS
ATATAATGTTTCACAAGAAA+TGG 0.380297 7.1:+4666101 MS.gene050442:CDS
TTTAGCTACCTTGTTGTACT+TGG 0.384441 7.1:-4664980 None:intergenic
TCCCTGTCATGTAGTGTTGC+GGG 0.387723 7.1:+4665864 MS.gene050442:intron
CGAGTTACGGATGGCTTCTA+AGG 0.391035 7.1:+4666318 MS.gene050442:CDS
AATTGAGAAGCATCAATTGA+TGG 0.396902 7.1:-4664577 None:intergenic
ACCTCCAAAATTCAACGAAT+CGG 0.405812 7.1:-4669156 None:intergenic
CTTGTTGTCTTGTTTGGGAG+AGG 0.408483 7.1:-4666149 None:intergenic
TTTCCGACCTTTGGTGTGCC+TGG 0.419064 7.1:-4669022 None:intergenic
TTCAGCTTCGTGTATATTTG+AGG 0.419331 7.1:+4668297 MS.gene050442:intron
TCCTCTACAGTCCGAGATGA+TGG 0.419890 7.1:-4665649 None:intergenic
AGCAAACATTGCAAGATCTC+GGG 0.423802 7.1:+4668390 MS.gene050442:CDS
TGCGGGCTATATTACTTGCC+AGG 0.427836 7.1:+4665881 MS.gene050442:CDS
ATGATCTTCATCTTTACCAT+TGG 0.430773 7.1:+4664827 MS.gene050442:CDS
TGATCTTCATCTTTACCATT+GGG 0.431644 7.1:+4664828 MS.gene050442:CDS
ACAAGAAATGGAGCGAAAAC+GGG 0.436669 7.1:+4666113 MS.gene050442:CDS
GGTTACTGAACAGTCTCAAT+TGG 0.436817 7.1:+4667712 MS.gene050442:intron
GTCAATGGTGTTCTACCTAC+TGG 0.449074 7.1:+4664943 MS.gene050442:CDS
ATGGCTGAATCTCCAGAAAC+AGG 0.450187 7.1:+4668718 MS.gene050442:CDS
GCAGAAGGCACAACCATTTG+TGG 0.456839 7.1:-4667815 None:intergenic
TAATTCATTTGTCTCCTCCT+TGG 0.460992 7.1:-4665572 None:intergenic
AACTGTTGTTTCAGGCGAAA+GGG 0.463388 7.1:+4669267 MS.gene050442:intron
CCTCCAAAATTCAACGAATC+GGG 0.465713 7.1:-4669155 None:intergenic
CAAGCTTCAAACTCAACTGC+TGG 0.466195 7.1:+4668344 MS.gene050442:CDS
CTGGAGTTCGGACTATCAAA+CGG 0.471345 7.1:+4668363 MS.gene050442:CDS
GACATATGCACTCGAGCAAA+TGG 0.476593 7.1:+4668319 MS.gene050442:CDS
GAATGTGCAACTTCCACAAA+TGG 0.479963 7.1:+4667802 MS.gene050442:CDS
GAGCAAACATTGCAAGATCT+CGG 0.481522 7.1:+4668389 MS.gene050442:CDS
GCATCAATTGATGGCATAAG+AGG 0.485257 7.1:-4664568 None:intergenic
TAAAAGACCTAGAAAACAAA+AGG 0.485836 7.1:+4669465 MS.gene050442:CDS
GCGAAAACGGGCACTGTCCA+TGG 0.488734 7.1:+4666125 MS.gene050442:CDS
TTTCAGGTTCGAGTAGTCAA+TGG 0.491064 7.1:+4664928 MS.gene050442:intron
ACCTAGAAAACAAAAGGCCT+CGG 0.494235 7.1:+4669471 MS.gene050442:CDS
TACTCTAGCTTCTCTTCGCA+TGG 0.494649 7.1:+4667850 MS.gene050442:CDS
GTCCCCGGAAGATGCAGCCC+TGG 0.501841 7.1:-4665899 None:intergenic
AAACTGTTGTTTCAGGCGAA+AGG 0.502998 7.1:+4669266 MS.gene050442:intron
ACAAGAGAAAAGAGATGAAG+AGG 0.510309 7.1:+4666167 MS.gene050442:CDS
CAAACTCAACTGCTGGAGTT+CGG 0.511526 7.1:+4668351 MS.gene050442:CDS
ATCACGGAAAGATGAACCTT+CGG 0.512389 7.1:-4668981 None:intergenic
ACCTCGCGTGAAATGCCATC+AGG 0.515608 7.1:-4664422 None:intergenic
GTCCCTGTCATGTAGTGTTG+CGG 0.515697 7.1:+4665863 MS.gene050442:intron
ACTTTATTTGTATAGGGGCA+TGG 0.516874 7.1:+4669421 MS.gene050442:intron
AAAGCCTCCTACTCACGAAA+AGG 0.530448 7.1:+4664606 MS.gene050442:CDS
TGGAGTTCGGACTATCAAAC+GGG 0.542516 7.1:+4668364 MS.gene050442:CDS
TCTTTCCGTGATGGATCCTA+CGG 0.547451 7.1:+4668992 MS.gene050442:CDS
TTAAAGGATCGATATTATAG+TGG 0.547811 7.1:+4665673 MS.gene050442:CDS
GAAGGTTCATCTTTCCGTGA+TGG 0.548182 7.1:+4668983 MS.gene050442:CDS
CTTAGAAGCCATCCGTAACT+CGG 0.558886 7.1:-4666317 None:intergenic
GTTGCAGAGAGGGCTGTCCC+TGG 0.559311 7.1:+4667761 MS.gene050442:CDS
TGTGGAAGTTGCACATTCGA+AGG 0.559456 7.1:-4667797 None:intergenic
TATCAGCTATAACAACAAAA+CGG 0.560637 7.1:-4665621 None:intergenic
GTTGTTTCAGGCGAAAGGGT+TGG 0.562497 7.1:+4669271 MS.gene050442:intron
TTTCTCTGAGATTCTTTGGG+AGG 0.563303 7.1:-4664398 None:intergenic
TAGGTTTATGCACTTACTGG+TGG 0.564499 7.1:+4664538 MS.gene050442:intron
TGCCAGGGCTGCATCTTCCG+GGG 0.572929 7.1:+4665897 MS.gene050442:CDS
GTAGAAGCATTATCTGCAGA+AGG 0.577553 7.1:-4667830 None:intergenic
TCCAGGTAAATTTGAAACCG+AGG 0.579026 7.1:+4668639 MS.gene050442:intron
CCAGGTAAATTTGAAACCGA+GGG 0.579215 7.1:+4668640 MS.gene050442:intron
CTGATAGGTTCCCATCATCT+CGG 0.582805 7.1:+4665638 MS.gene050442:CDS
TCTTGTTTGGGAGAGGACCA+TGG 0.585148 7.1:-4666142 None:intergenic
TTACGAGCAGAATTGGTGAA+AGG 0.585208 7.1:-4664802 None:intergenic
ACCTGATGGCATTTCACGCG+AGG 0.587818 7.1:+4664421 MS.gene050442:CDS
GCGGGCTATATTACTTGCCA+GGG 0.590495 7.1:+4665882 MS.gene050442:CDS
CCTCTACAGTCCGAGATGAT+GGG 0.592270 7.1:-4665648 None:intergenic
TGTGCCTGGTGTTTCACCGT+AGG 0.598536 7.1:-4669008 None:intergenic
GGATCCTACGGTGAAACACC+AGG 0.600080 7.1:+4669004 MS.gene050442:CDS
GTGGCAGGTGCAATATAAAG+AGG 0.604781 7.1:+4668958 MS.gene050442:intron
GAAACCCTAAATGGACGCGA+AGG 0.605606 7.1:+4664316 None:intergenic
CCCATCATCTCGGACTGTAG+AGG 0.606561 7.1:+4665648 MS.gene050442:CDS
TGATGCAGAAGTTGCAGAGA+GGG 0.607610 7.1:+4667751 MS.gene050442:CDS
GAAGGAGATACAGTTTCACC+AGG 0.611694 7.1:-4667779 None:intergenic
AAGAATAGCCGAGTTACGGA+TGG 0.620429 7.1:+4666309 MS.gene050442:CDS
GCAAAAGAATAGTCTCCAGT+AGG 0.625902 7.1:-4664958 None:intergenic
TCAATTGATGGCATAAGAGG+TGG 0.628674 7.1:-4664565 None:intergenic
AATTATTTGATTTGTGTGAG+AGG 0.630139 7.1:+4665590 MS.gene050442:CDS
GAATCTCAGAGAAAACCTGA+TGG 0.650054 7.1:+4664407 MS.gene050442:CDS
GCAAACATTGCAAGATCTCG+GGG 0.655130 7.1:+4668391 MS.gene050442:CDS
AGGATGTGTTGCAATGTCCC+CGG 0.656289 7.1:-4665914 None:intergenic
TGAAACACCAGGCACACCAA+AGG 0.660161 7.1:+4669015 MS.gene050442:CDS
CCGGAGGAATTAAAGATCCG+AGG 0.665879 7.1:-4669488 None:intergenic
GTGCAATATAAAGAGGCCGA+AGG 0.666909 7.1:+4668965 MS.gene050442:CDS
ATCTACCTAGATGTGGACCA+AGG 0.676327 7.1:+4665555 MS.gene050442:intron
CATCATCAAATACACAGACG+AGG 0.685360 7.1:+4665095 MS.gene050442:CDS
TAAGAAGAGAAATACTAACA+TGG 0.691447 7.1:+4668699 MS.gene050442:CDS
CTGATGCAGAAGTTGCAGAG+AGG 0.692246 7.1:+4667750 MS.gene050442:CDS
TTTCACCGTAGGATCCATCA+CGG 0.706383 7.1:-4668997 None:intergenic
AAGGAGATACAGTTTCACCA+GGG 0.739390 7.1:-4667778 None:intergenic
TACCTAGATGTGGACCAAGG+AGG 0.740553 7.1:+4665558 MS.gene050442:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACATATTAAATTCA+AGG + chr7.1:4666587-4666606 MS.gene050442:intron 10.0%
!! ACCTAAAAAATTATAATTTA+TGG - chr7.1:4666632-4666651 None:intergenic 10.0%
!! ATTGATATATTTATTTGTAT+TGG - chr7.1:4667015-4667034 None:intergenic 10.0%
!! CCTAAAAAATTATAATTTAT+GGG - chr7.1:4666631-4666650 None:intergenic 10.0%
!! TAAAAAAATTTCTTTATAGT+TGG - chr7.1:4666565-4666584 None:intergenic 10.0%
!! TAATTAAATCAAAGAAATTT+GGG - chr7.1:4668923-4668942 None:intergenic 10.0%
!!! AAAATTGGATAATTTTTTTA+AGG - chr7.1:4666660-4666679 None:intergenic 10.0%
!!! AAATAATTTTTTTTAATGAG+GGG + chr7.1:4668214-4668233 MS.gene050442:intron 10.0%
!!! AATTGAATTGTATTATTTTT+AGG + chr7.1:4664519-4664538 MS.gene050442:intron 10.0%
!!! ATTAATTTTACATTTACTTT+TGG + chr7.1:4669359-4669378 MS.gene050442:intron 10.0%
!!! CAAATAATTTTTTTTAATGA+GGG + chr7.1:4668213-4668232 MS.gene050442:intron 10.0%
!!! TAAAATTTTACAAAAAAAAG+TGG + chr7.1:4666693-4666712 MS.gene050442:intron 10.0%
!!! TCAAATAATTTTTTTTAATG+AGG + chr7.1:4668212-4668231 MS.gene050442:intron 10.0%
!!! TCATGAATAATATTTTTTTT+GGG + chr7.1:4667149-4667168 MS.gene050442:intron 10.0%
!!! TTCATGAATAATATTTTTTT+TGG + chr7.1:4667148-4667167 MS.gene050442:intron 10.0%
!! AAAAAATATTATTCATGAAG+TGG - chr7.1:4667147-4667166 None:intergenic 15.0%
!! AATAAGATATTAAATGACTA+AGG - chr7.1:4667441-4667460 None:intergenic 15.0%
!! AATTAAATCAAAGAAATTTG+GGG - chr7.1:4668922-4668941 None:intergenic 15.0%
!! ACATAAAATAAATTTCAGTT+CGG - chr7.1:4665234-4665253 None:intergenic 15.0%
!! ACTAAAATTAACAAAATCTT+AGG + chr7.1:4666754-4666773 MS.gene050442:intron 15.0%
!! ATAATCATAGACAAATTAAA+TGG - chr7.1:4666925-4666944 None:intergenic 15.0%
!! ATATATGATATATTGTACAA+TGG - chr7.1:4665395-4665414 None:intergenic 15.0%
!! ATGTAAAATTAATCAATTGA+CGG - chr7.1:4669352-4669371 None:intergenic 15.0%
!! GTAATAGTACATTATTAAAA+TGG - chr7.1:4669386-4669405 None:intergenic 15.0%
!! GTAATTAAATCAAAGAAATT+TGG - chr7.1:4668924-4668943 None:intergenic 15.0%
!! TAATCTCTAACAAAAAATTA+AGG + chr7.1:4666731-4666750 MS.gene050442:intron 15.0%
!! TAATTAGACAAAAAAAATTG+TGG - chr7.1:4669324-4669343 None:intergenic 15.0%
!! TATATGATATATTGTACAAT+GGG - chr7.1:4665394-4665413 None:intergenic 15.0%
!! TATGTTTAATGATAAATAGA+TGG - chr7.1:4669240-4669259 None:intergenic 15.0%
!! TCTAAATTTCTATAAAGTAA+GGG + chr7.1:4669209-4669228 MS.gene050442:intron 15.0%
!! TTCTAAATTTCTATAAAGTA+AGG + chr7.1:4669208-4669227 MS.gene050442:intron 15.0%
!!! ATAATTTTTATTGTTGAAAG+AGG + chr7.1:4666952-4666971 MS.gene050442:intron 15.0%
!!! ATTGATTTTATACATTTTTC+AGG + chr7.1:4667691-4667710 MS.gene050442:intron 15.0%
!!! CATGAATAATATTTTTTTTG+GGG + chr7.1:4667150-4667169 MS.gene050442:intron 15.0%
!!! CCCATAAATTATAATTTTTT+AGG + chr7.1:4666628-4666647 MS.gene050442:intron 15.0%
!!! CTTTTCAAATGTAAATAAAT+AGG + chr7.1:4666877-4666896 MS.gene050442:intron 15.0%
!!! GTATTATTTTTTTTCTTTGA+AGG - chr7.1:4666199-4666218 None:intergenic 15.0%
!!! TTTTAATAATGTACTATTAC+TGG + chr7.1:4669386-4669405 MS.gene050442:intron 15.0%
!!! TTTTGCAACTAAATTTATTT+GGG + chr7.1:4667072-4667091 MS.gene050442:intron 15.0%
!!! TTTTTGCAACTAAATTTATT+TGG + chr7.1:4667071-4667090 MS.gene050442:intron 15.0%
!! AAAGAATGAATAAAGTGAAT+CGG - chr7.1:4664478-4664497 None:intergenic 20.0%
!! AATTTGATATTTCGCTATTT+AGG - chr7.1:4667940-4667959 None:intergenic 20.0%
!! AGACAATTATTGATGAAATT+GGG - chr7.1:4666834-4666853 None:intergenic 20.0%
!! AGCTCAATGTTTATTATTTA+GGG + chr7.1:4667097-4667116 MS.gene050442:intron 20.0%
!! ATATAATGTTTCACAAGAAA+TGG + chr7.1:4666101-4666120 MS.gene050442:CDS 20.0%
!! ATATGATATATTGTACAATG+GGG - chr7.1:4665393-4665412 None:intergenic 20.0%
!! ATTAAATCAAAGAAATTTGG+GGG - chr7.1:4668921-4668940 None:intergenic 20.0%
!! ATTAAGAAAGATGGTTAATT+TGG - chr7.1:4668502-4668521 None:intergenic 20.0%
!! ATTTCTTGTGAAACATTATA+TGG - chr7.1:4666102-4666121 None:intergenic 20.0%
!! ATTTGATATTTCGCTATTTA+GGG - chr7.1:4667939-4667958 None:intergenic 20.0%
!! GCAATCAATTTATATATCAA+TGG + chr7.1:4665330-4665349 MS.gene050442:intron 20.0%
!! TAAAAAACTGAGACAAAAAT+TGG - chr7.1:4666675-4666694 None:intergenic 20.0%
!! TAAAAAGTGACAGTTAAATA+GGG + chr7.1:4667585-4667604 MS.gene050442:intron 20.0%
!! TAGCTCAATGTTTATTATTT+AGG + chr7.1:4667096-4667115 MS.gene050442:intron 20.0%
!! TATTAAGATGATTATCCAAA+CGG + chr7.1:4664743-4664762 MS.gene050442:intron 20.0%
!! TGTAAAATTAATCAATTGAC+GGG - chr7.1:4669351-4669370 None:intergenic 20.0%
!! TTAAAAAGTGACACTTAAAA+AGG - chr7.1:4667344-4667363 None:intergenic 20.0%
!! TTAAAAAGTGACAGTTAAAT+AGG + chr7.1:4667584-4667603 MS.gene050442:intron 20.0%
!! TTTATAGAAATTTAGAAAGC+AGG - chr7.1:4669205-4669224 None:intergenic 20.0%
!! TTTGCAACTAAATTTATTTG+GGG + chr7.1:4667073-4667092 MS.gene050442:intron 20.0%
!!! CTTATATTGTTTTATTTTGC+AGG + chr7.1:4666270-4666289 MS.gene050442:intron 20.0%
!!! TACAGTTTTTTGGAAATTTA+TGG + chr7.1:4665165-4665184 MS.gene050442:intron 20.0%
!!! TTTTTATTATCAAGAGAAGA+TGG - chr7.1:4664371-4664390 None:intergenic 20.0%
! AAGTTTAGACATGAAAAATG+AGG + chr7.1:4665299-4665318 MS.gene050442:intron 25.0%
! AATAATGTACTATTACTGGT+TGG + chr7.1:4669390-4669409 MS.gene050442:intron 25.0%
! AATATTATTCATGAAGTGGT+CGG - chr7.1:4667143-4667162 None:intergenic 25.0%
! AATTTATATATCAATGGACC+TGG + chr7.1:4665336-4665355 MS.gene050442:intron 25.0%
! AGAAATCAGAATTAGATCAT+AGG - chr7.1:4666416-4666435 None:intergenic 25.0%
! AGATTCTACTATCTAATTCA+TGG - chr7.1:4668527-4668546 None:intergenic 25.0%
! AGTTTAGACATGAAAAATGA+GGG + chr7.1:4665300-4665319 MS.gene050442:intron 25.0%
! ATATTAATGCATTGAACACT+TGG - chr7.1:4665520-4665539 None:intergenic 25.0%
! ATCCATCACTTTGAATATTA+GGG + chr7.1:4666461-4666480 MS.gene050442:intron 25.0%
! ATGTATAAAATCAATATCCC+AGG - chr7.1:4667686-4667705 None:intergenic 25.0%
! ATTAAGATGATTATCCAAAC+GGG + chr7.1:4664744-4664763 MS.gene050442:intron 25.0%
! CAGACAATTATTGATGAAAT+TGG - chr7.1:4666835-4666854 None:intergenic 25.0%
! CCAAAAATATAGCAATGAAT+AGG - chr7.1:4665033-4665052 None:intergenic 25.0%
! CTCGTTACAAAAATTTCATT+TGG - chr7.1:4668576-4668595 None:intergenic 25.0%
! CTTATGAAAATAAGCTGAAA+AGG - chr7.1:4664703-4664722 None:intergenic 25.0%
! GATAACAACTCCTAAATTAA+TGG - chr7.1:4666374-4666393 None:intergenic 25.0%
! GATAGTAGAATCTTATATTG+AGG + chr7.1:4668534-4668553 MS.gene050442:intron 25.0%
! GATTCTACTATCTAATTCAT+GGG - chr7.1:4668526-4668545 None:intergenic 25.0%
! TAAAAGACCTAGAAAACAAA+AGG + chr7.1:4669465-4669484 MS.gene050442:CDS 25.0%
! TAAACAATCATACATTAGAC+AGG - chr7.1:4668858-4668877 None:intergenic 25.0%
! TAAATAACTAAGGGTAATGT+TGG + chr7.1:4667483-4667502 MS.gene050442:intron 25.0%
! TAAGAAGAGAAATACTAACA+TGG + chr7.1:4668699-4668718 MS.gene050442:CDS 25.0%
! TACAATTTCAGAACACAAAA+TGG - chr7.1:4667896-4667915 None:intergenic 25.0%
! TACCAATACACCATTAATTT+AGG + chr7.1:4666361-4666380 MS.gene050442:intron 25.0%
! TATCAGCTATAACAACAAAA+CGG - chr7.1:4665624-4665643 None:intergenic 25.0%
! TATCCATCACTTTGAATATT+AGG + chr7.1:4666460-4666479 MS.gene050442:intron 25.0%
! TCTCCACAATAAATAACTAA+GGG + chr7.1:4667474-4667493 MS.gene050442:intron 25.0%
! TTAAAGGATCGATATTATAG+TGG + chr7.1:4665673-4665692 MS.gene050442:CDS 25.0%
! TTAAATCAAAGAAATTTGGG+GGG - chr7.1:4668920-4668939 None:intergenic 25.0%
! TTAACAAATGCAGTTAAAAC+AGG - chr7.1:4665424-4665443 None:intergenic 25.0%
! TTACCCTTAGTTATTTATTG+TGG - chr7.1:4667480-4667499 None:intergenic 25.0%
! TTTGAAAGTGACAGTTAAAT+AGG + chr7.1:4667534-4667553 MS.gene050442:intron 25.0%
!! CCTATTCATTGCTATATTTT+TGG + chr7.1:4665030-4665049 MS.gene050442:intron 25.0%
!!! AATTATTTGATTTGTGTGAG+AGG + chr7.1:4665590-4665609 MS.gene050442:CDS 25.0%
!!! AATTTTGAAGATCAGAATTC+TGG - chr7.1:4668167-4668186 None:intergenic 25.0%
!!! ATTATGTTTTTCAGGTTACT+TGG + chr7.1:4664770-4664789 MS.gene050442:intron 25.0%
!!! TAATATTCAAAGTGATGGAT+AGG - chr7.1:4666461-4666480 None:intergenic 25.0%
!!! TATTTAACTGTCACTTTCAA+AGG - chr7.1:4667535-4667554 None:intergenic 25.0%
!!! TCACTTGTTAGAATTTTCAT+GGG + chr7.1:4668821-4668840 MS.gene050442:intron 25.0%
!!! TGTCTAATTGTACAGTTTTT+TGG + chr7.1:4665155-4665174 MS.gene050442:intron 25.0%
!!! TTCACTTGTTAGAATTTTCA+TGG + chr7.1:4668820-4668839 MS.gene050442:intron 25.0%
!!! TTGTATTGGTTTGATACTTT+CGG - chr7.1:4667001-4667020 None:intergenic 25.0%
AAAAACATAATAACCCCGTT+TGG - chr7.1:4664761-4664780 None:intergenic 30.0%
AAATATGAATTTCCGACCTT+TGG - chr7.1:4669034-4669053 None:intergenic 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr7.1:4667339-4667358 None:intergenic 30.0%
AATAAGCTGAAAAGGACTTA+TGG - chr7.1:4664695-4664714 None:intergenic 30.0%
ACCTTTCAATTCTGATGATA+TGG + chr7.1:4665789-4665808 MS.gene050442:intron 30.0%
ATAGGGAGTAATTACCAATT+TGG + chr7.1:4667602-4667621 MS.gene050442:intron 30.0%
ATGATCTTCATCTTTACCAT+TGG + chr7.1:4664827-4664846 MS.gene050442:CDS 30.0%
CATAAAAAGTTAAGGTAGTC+GGG - chr7.1:4668422-4668441 None:intergenic 30.0%
CATTCATGTTTATAACCAGA+TGG + chr7.1:4668793-4668812 MS.gene050442:intron 30.0%
CTCCTAAATTAATGGTGTAT+TGG - chr7.1:4666366-4666385 None:intergenic 30.0%
CTCTCCACAATAAATAACTA+AGG + chr7.1:4667473-4667492 MS.gene050442:intron 30.0%
CTTACAATAGAAGTCAATGA+AGG - chr7.1:4665282-4665301 None:intergenic 30.0%
GAGTTAAATGACATGAATTG+TGG - chr7.1:4665734-4665753 None:intergenic 30.0%
GCATAAAAAGTTAAGGTAGT+CGG - chr7.1:4668423-4668442 None:intergenic 30.0%
GTAACAATTATTGAGTGTCT+TGG - chr7.1:4667380-4667399 None:intergenic 30.0%
GTTTAGACATGAAAAATGAG+GGG + chr7.1:4665301-4665320 MS.gene050442:intron 30.0%
TAGGGAGTAATTACCAATTT+GGG + chr7.1:4667603-4667622 MS.gene050442:intron 30.0%
TAGGTAGATAAAGCAGAATA+AGG - chr7.1:4665544-4665563 None:intergenic 30.0%
TATACCAATATACCTGTTTC+TGG - chr7.1:4668733-4668752 None:intergenic 30.0%
TCCATATCATCAGAATTGAA+AGG - chr7.1:4665793-4665812 None:intergenic 30.0%
TGATCTTCATCTTTACCATT+GGG + chr7.1:4664828-4664847 MS.gene050442:CDS 30.0%
TTAAGATGATTATCCAAACG+GGG + chr7.1:4664745-4664764 MS.gene050442:intron 30.0%
TTCATGGGTATTAAGAAAGA+TGG - chr7.1:4668511-4668530 None:intergenic 30.0%
TTCCCTAATATTCAAAGTGA+TGG - chr7.1:4666466-4666485 None:intergenic 30.0%
TTGAGTTTGACCATATGTTT+GGG + chr7.1:4668596-4668615 MS.gene050442:intron 30.0%
! AGTTTCCCTTCTATTGTTTT+AGG + chr7.1:4669069-4669088 MS.gene050442:intron 30.0%
! ATGTATCAAGTTGTGATTGT+GGG + chr7.1:4665255-4665274 MS.gene050442:intron 30.0%
! TATGTATCAAGTTGTGATTG+TGG + chr7.1:4665254-4665273 MS.gene050442:intron 30.0%
! TCGGGAACTTTATTTGTATA+GGG + chr7.1:4669415-4669434 MS.gene050442:intron 30.0%
! TGTTTATTATTTAGGGTAGC+CGG + chr7.1:4667104-4667123 MS.gene050442:intron 30.0%
! TTTGACTTCACCTTAATGAT+AGG - chr7.1:4665937-4665956 None:intergenic 30.0%
!! AATTGAGAAGCATCAATTGA+TGG - chr7.1:4664580-4664599 None:intergenic 30.0%
!! ATGCATAAAACTGTTGTTTC+AGG + chr7.1:4669259-4669278 MS.gene050442:intron 30.0%
!! ATTACTTGTTGTGAAATACG+TGG + chr7.1:4668939-4668958 MS.gene050442:intron 30.0%
!! TTTCTCTTGTTGTCTTGTTT+GGG - chr7.1:4666157-4666176 None:intergenic 30.0%
!! TTTTCTCTTGTTGTCTTGTT+TGG - chr7.1:4666158-4666177 None:intergenic 30.0%
!!! CACTTTTTAAGTGTCACTTT+TGG - chr7.1:4667574-4667593 None:intergenic 30.0%
!!! GTTTTGTTGTTATAGCTGAT+AGG + chr7.1:4665623-4665642 MS.gene050442:CDS 30.0%
!!! TTTTAGGTTTATGCACTTAC+TGG + chr7.1:4664535-4664554 MS.gene050442:intron 30.0%
AAATCGCTATTTAGAAACGC+TGG + chr7.1:4666789-4666808 MS.gene050442:intron 35.0%
AACAGGTTACTATCAACACA+TGG - chr7.1:4666059-4666078 None:intergenic 35.0%
AAGTATTTGACAGATCCTGT+GGG + chr7.1:4665126-4665145 MS.gene050442:intron 35.0%
AATCGCTATTTAGAAACGCT+GGG + chr7.1:4666790-4666809 MS.gene050442:intron 35.0%
AATTAGACATGATTACCCAC+AGG - chr7.1:4665144-4665163 None:intergenic 35.0%
ACAAGAGAAAAGAGATGAAG+AGG + chr7.1:4666167-4666186 MS.gene050442:CDS 35.0%
ACCAGACGTCATTTATTATG+AGG - chr7.1:4666248-4666267 None:intergenic 35.0%
ACCTCCAAAATTCAACGAAT+CGG - chr7.1:4669159-4669178 None:intergenic 35.0%
ACGAGCCTAAAACAATAGAA+GGG - chr7.1:4669077-4669096 None:intergenic 35.0%
ACTTCATACATTTCTGCCAT+CGG + chr7.1:4666217-4666236 MS.gene050442:intron 35.0%
AGCTCGCAAAAAATTTATGC+AGG + chr7.1:4666537-4666556 MS.gene050442:intron 35.0%
AGGGAGTAATTACCAATTTG+GGG + chr7.1:4667604-4667623 MS.gene050442:intron 35.0%
ATCATCTTTACGAGCAGAAT+TGG - chr7.1:4664812-4664831 None:intergenic 35.0%
ATCATGTTAAGCAGAACACT+AGG + chr7.1:4668031-4668050 MS.gene050442:intron 35.0%
ATCTCCAGAAACAGGTATAT+TGG + chr7.1:4668726-4668745 MS.gene050442:intron 35.0%
ATGCATTGAACACTTGGTAA+AGG - chr7.1:4665514-4665533 None:intergenic 35.0%
ATTGTAAGTGTCTGGCAATT+TGG + chr7.1:4667910-4667929 MS.gene050442:intron 35.0%
CAAAAAGAATAGCCGAGTTA+CGG + chr7.1:4666305-4666324 MS.gene050442:CDS 35.0%
CCAGACGTCATTTATTATGA+GGG - chr7.1:4666247-4666266 None:intergenic 35.0%
CTACATTGAAAAGAGAGAAC+AGG - chr7.1:4666076-4666095 None:intergenic 35.0%
CTCGCAAAAAATTTATGCAG+GGG + chr7.1:4666539-4666558 MS.gene050442:intron 35.0%
GAATCAGCAACATTCTATAC+TGG + chr7.1:4668880-4668899 MS.gene050442:intron 35.0%
GACTGTCGTTAGACAATTTA+GGG - chr7.1:4667967-4667986 None:intergenic 35.0%
GCAAGCTGCATAAAAAGTTA+AGG - chr7.1:4668430-4668449 None:intergenic 35.0%
GCTCGCAAAAAATTTATGCA+GGG + chr7.1:4666538-4666557 MS.gene050442:intron 35.0%
GGAGTTGTTATCATGATTCA+AGG + chr7.1:4666382-4666401 MS.gene050442:intron 35.0%
GTTGAGTTTGACCATATGTT+TGG + chr7.1:4668595-4668614 MS.gene050442:intron 35.0%
TAACAAGTGAAATCACCATC+TGG - chr7.1:4668811-4668830 None:intergenic 35.0%
TAATTCATTTGTCTCCTCCT+TGG - chr7.1:4665575-4665594 None:intergenic 35.0%
TGACTGTCGTTAGACAATTT+AGG - chr7.1:4667968-4667987 None:intergenic 35.0%
TGCAACACATCCTATCATTA+AGG + chr7.1:4665924-4665943 MS.gene050442:CDS 35.0%
TTACTATCAACACATGGCAA+TGG - chr7.1:4666053-4666072 None:intergenic 35.0%
TTATTATGAGGGTAAACCGA+TGG - chr7.1:4666236-4666255 None:intergenic 35.0%
TTCAGCTTCGTGTATATTTG+AGG + chr7.1:4668297-4668316 MS.gene050442:intron 35.0%
TTGTAAGTGTCTGGCAATTT+GGG + chr7.1:4667911-4667930 MS.gene050442:intron 35.0%
! AAAACTTCGTTTTGTAGCAC+TGG + chr7.1:4668135-4668154 MS.gene050442:intron 35.0%
! AAAGTATTTGACAGATCCTG+TGG + chr7.1:4665125-4665144 MS.gene050442:intron 35.0%
! ACGGGGTTATTATGTTTTTC+AGG + chr7.1:4664762-4664781 MS.gene050442:intron 35.0%
! ACTTTATTTGTATAGGGGCA+TGG + chr7.1:4669421-4669440 MS.gene050442:intron 35.0%
! ATTTGGGGCAACAAAATTTG+TGG + chr7.1:4667619-4667638 MS.gene050442:intron 35.0%
! CAAATTTTGTTGCCCCAAAT+TGG - chr7.1:4667619-4667638 None:intergenic 35.0%
! CGGGAACTTTATTTGTATAG+GGG + chr7.1:4669416-4669435 MS.gene050442:intron 35.0%
! CTCGGGAACTTTATTTGTAT+AGG + chr7.1:4669414-4669433 MS.gene050442:intron 35.0%
! CTGTTCTCTCTTTTCAATGT+AGG + chr7.1:4666074-4666093 MS.gene050442:intron 35.0%
! TTCTTTTGCCAAGTACAACA+AGG + chr7.1:4664972-4664991 MS.gene050442:CDS 35.0%
! TTTAGCTACCTTGTTGTACT+TGG - chr7.1:4664983-4665002 None:intergenic 35.0%
!! ATTCCCGATTCGTTGAATTT+TGG + chr7.1:4669152-4669171 MS.gene050442:CDS 35.0%
!! GTTCTGAAATTGTAAGTGTC+TGG + chr7.1:4667902-4667921 MS.gene050442:intron 35.0%
!!! AGGTTTTCTCTGAGATTCTT+TGG - chr7.1:4664405-4664424 None:intergenic 35.0%
!!! GGTTTTCTCTGAGATTCTTT+GGG - chr7.1:4664404-4664423 None:intergenic 35.0%
!!! TATTTTTTTTGGGGTAGCCA+AGG + chr7.1:4667159-4667178 MS.gene050442:intron 35.0%
!!! TTATGTGTCGCTTCTTTTTC+AGG + chr7.1:4664912-4664931 MS.gene050442:intron 35.0%
!!! TTTTTCAGGTTACTTGGCAA+TGG + chr7.1:4664776-4664795 MS.gene050442:intron 35.0%
AAGGAGATACAGTTTCACCA+GGG - chr7.1:4667781-4667800 None:intergenic 40.0%
AATGGACCTGGTTATTTGCA+AGG + chr7.1:4665348-4665367 MS.gene050442:intron 40.0%
ACAAGAAATGGAGCGAAAAC+GGG + chr7.1:4666113-4666132 MS.gene050442:CDS 40.0%
ACCTAGAAAACAAAAGGCCT+CGG + chr7.1:4669471-4669490 MS.gene050442:CDS 40.0%
AGCAAACATTGCAAGATCTC+GGG + chr7.1:4668390-4668409 MS.gene050442:CDS 40.0%
ATCACGGAAAGATGAACCTT+CGG - chr7.1:4668984-4669003 None:intergenic 40.0%
CAAAAAGGACCAAAAACGCA+AGG + chr7.1:4669294-4669313 MS.gene050442:CDS 40.0%
CACAAGAAATGGAGCGAAAA+CGG + chr7.1:4666112-4666131 MS.gene050442:CDS 40.0%
CACGAGCCTAAAACAATAGA+AGG - chr7.1:4669078-4669097 None:intergenic 40.0%
CATCATCAAATACACAGACG+AGG + chr7.1:4665095-4665114 MS.gene050442:CDS 40.0%
CCCTCATAATAAATGACGTC+TGG + chr7.1:4666244-4666263 MS.gene050442:intron 40.0%
CCTCCAAAATTCAACGAATC+GGG - chr7.1:4669158-4669177 None:intergenic 40.0%
CTACTGACACATTTGTTTCG+TGG + chr7.1:4669107-4669126 MS.gene050442:intron 40.0%
CTGCTTTATCTACCTAGATG+TGG + chr7.1:4665548-4665567 MS.gene050442:intron 40.0%
GAATCTCAGAGAAAACCTGA+TGG + chr7.1:4664407-4664426 MS.gene050442:CDS 40.0%
GAATGTGCAACTTCCACAAA+TGG + chr7.1:4667802-4667821 MS.gene050442:CDS 40.0%
GAGCAAACATTGCAAGATCT+CGG + chr7.1:4668389-4668408 MS.gene050442:CDS 40.0%
GCAAAAGAATAGTCTCCAGT+AGG - chr7.1:4664961-4664980 None:intergenic 40.0%
GGTCGGTATGTATTTACATC+CGG - chr7.1:4667126-4667145 None:intergenic 40.0%
GGTTACTGAACAGTCTCAAT+TGG + chr7.1:4667712-4667731 MS.gene050442:intron 40.0%
TAGGTTTATGCACTTACTGG+TGG + chr7.1:4664538-4664557 MS.gene050442:intron 40.0%
TGACACATTTGTTTCGTGGT+GGG + chr7.1:4669111-4669130 MS.gene050442:intron 40.0%
TGACACTTAAAAAGGAACGG+AGG - chr7.1:4667336-4667355 None:intergenic 40.0%
TTACGAGCAGAATTGGTGAA+AGG - chr7.1:4664805-4664824 None:intergenic 40.0%
! ACTTTAGTTTACCTCCCATC+AGG - chr7.1:4667213-4667232 None:intergenic 40.0%
! CCAGGTAAATTTGAAACCGA+GGG + chr7.1:4668640-4668659 MS.gene050442:intron 40.0%
! CTTTAGTTTACCTCCCATCA+GGG - chr7.1:4667212-4667231 None:intergenic 40.0%
! GCATCAATTGATGGCATAAG+AGG - chr7.1:4664571-4664590 None:intergenic 40.0%
! GTTCAAACCTTTTCGTGAGT+AGG - chr7.1:4664616-4664635 None:intergenic 40.0%
! TCAATTGATGGCATAAGAGG+TGG - chr7.1:4664568-4664587 None:intergenic 40.0%
! TCCAGGTAAATTTGAAACCG+AGG + chr7.1:4668639-4668658 MS.gene050442:intron 40.0%
! TCTGCACAAACAGCTTTTGT+TGG - chr7.1:4668668-4668687 None:intergenic 40.0%
! TTTAGTTTACCTCCCATCAG+GGG - chr7.1:4667211-4667230 None:intergenic 40.0%
!! AAACTGTTGTTTCAGGCGAA+AGG + chr7.1:4669266-4669285 MS.gene050442:intron 40.0%
!! AACTGTTGTTTCAGGCGAAA+GGG + chr7.1:4669267-4669286 MS.gene050442:intron 40.0%
!! CAGGTGAGAGTCTGTTTTAA+CGG - chr7.1:4666023-4666042 None:intergenic 40.0%
!! GTACTATTACTGGTTGGTCT+CGG + chr7.1:4669396-4669415 MS.gene050442:intron 40.0%
!! GTAGAAGCATTATCTGCAGA+AGG - chr7.1:4667833-4667852 None:intergenic 40.0%
!! TACTATTACTGGTTGGTCTC+GGG + chr7.1:4669397-4669416 MS.gene050442:intron 40.0%
!! TTTCAGGTTCGAGTAGTCAA+TGG + chr7.1:4664928-4664947 MS.gene050442:intron 40.0%
!! TTTCTCTGAGATTCTTTGGG+AGG - chr7.1:4664401-4664420 None:intergenic 40.0%
!!! ATTGTTTTAGGCTCGTGGTT+TGG + chr7.1:4669081-4669100 MS.gene050442:intron 40.0%
!!! CTTCTATTGTTTTAGGCTCG+TGG + chr7.1:4669076-4669095 MS.gene050442:intron 40.0%
AAAGCCTCCTACTCACGAAA+AGG + chr7.1:4664606-4664625 MS.gene050442:CDS 45.0%
AAGAATAGCCGAGTTACGGA+TGG + chr7.1:4666309-4666328 MS.gene050442:CDS 45.0%
ACCCGAAGGAAATTTGTGCT+AGG + chr7.1:4668093-4668112 MS.gene050442:intron 45.0%
AGAGGTCCTTGCAAATAACC+AGG - chr7.1:4665357-4665376 None:intergenic 45.0%
ATCTACCTAGATGTGGACCA+AGG + chr7.1:4665555-4665574 MS.gene050442:intron 45.0%
ATCTGTACTTGCACATGCCT+GGG + chr7.1:4667666-4667685 MS.gene050442:intron 45.0%
ATGGACGCGAAGGATATTCT+TGG + chr7.1:4664326-4664345 MS.gene050442:CDS 45.0%
ATGGCTGAATCTCCAGAAAC+AGG + chr7.1:4668718-4668737 MS.gene050442:CDS 45.0%
CAAACTCAACTGCTGGAGTT+CGG + chr7.1:4668351-4668370 MS.gene050442:CDS 45.0%
CAAAGAAATTTGGGGGGTGA+GGG - chr7.1:4668914-4668933 None:intergenic 45.0%
CAACACATGGCAATGGCTTA+AGG - chr7.1:4666046-4666065 None:intergenic 45.0%
CAAGCTTCAAACTCAACTGC+TGG + chr7.1:4668344-4668363 MS.gene050442:CDS 45.0%
CCCGAAGGAAATTTGTGCTA+GGG + chr7.1:4668094-4668113 MS.gene050442:intron 45.0%
CCCTAGCACAAATTTCCTTC+GGG - chr7.1:4668097-4668116 None:intergenic 45.0%
CCCTCGGTTTCAAATTTACC+TGG - chr7.1:4668643-4668662 None:intergenic 45.0%
CCTCTAACAGAGCTACTTGA+CGG - chr7.1:4668002-4668021 None:intergenic 45.0%
CTGACACATTTGTTTCGTGG+TGG + chr7.1:4669110-4669129 MS.gene050442:intron 45.0%
CTGATAGGTTCCCATCATCT+CGG + chr7.1:4665638-4665657 MS.gene050442:CDS 45.0%
CTGGAGTTCGGACTATCAAA+CGG + chr7.1:4668363-4668382 MS.gene050442:CDS 45.0%
CTTAGAAGCCATCCGTAACT+CGG - chr7.1:4666320-4666339 None:intergenic 45.0%
GAAAATGCGCACAGCATACT+AGG - chr7.1:4666494-4666513 None:intergenic 45.0%
GAAGGAGATACAGTTTCACC+AGG - chr7.1:4667782-4667801 None:intergenic 45.0%
GAAGGTTCATCTTTCCGTGA+TGG + chr7.1:4668983-4669002 MS.gene050442:CDS 45.0%
GACATATGCACTCGAGCAAA+TGG + chr7.1:4668319-4668338 MS.gene050442:CDS 45.0%
GACGTAAGCACTTGTGAAGA+GGG + chr7.1:4664659-4664678 MS.gene050442:intron 45.0%
GCAAACATTGCAAGATCTCG+GGG + chr7.1:4668391-4668410 MS.gene050442:CDS 45.0%
GCATATTGTGACTGACCCAA+TGG - chr7.1:4664846-4664865 None:intergenic 45.0%
GCCCTAGCACAAATTTCCTT+CGG - chr7.1:4668098-4668117 None:intergenic 45.0%
GTCAATGGTGTTCTACCTAC+TGG + chr7.1:4664943-4664962 MS.gene050442:CDS 45.0%
GTGCAATATAAAGAGGCCGA+AGG + chr7.1:4668965-4668984 MS.gene050442:CDS 45.0%
GTGGCAGGTGCAATATAAAG+AGG + chr7.1:4668958-4668977 MS.gene050442:intron 45.0%
TCAAAGAAATTTGGGGGGTG+AGG - chr7.1:4668915-4668934 None:intergenic 45.0%
TCGGACTGTAGAGGAGTTAA+AGG + chr7.1:4665657-4665676 MS.gene050442:CDS 45.0%
TGACGTAAGCACTTGTGAAG+AGG + chr7.1:4664658-4664677 MS.gene050442:intron 45.0%
TGATGCAGAAGTTGCAGAGA+GGG + chr7.1:4667751-4667770 MS.gene050442:CDS 45.0%
TGGAGTTCGGACTATCAAAC+GGG + chr7.1:4668364-4668383 MS.gene050442:CDS 45.0%
TGTGGAAGTTGCACATTCGA+AGG - chr7.1:4667800-4667819 None:intergenic 45.0%
TTTCACCGTAGGATCCATCA+CGG - chr7.1:4669000-4669019 None:intergenic 45.0%
! ACAGCTTTTGTTGGAACCCT+CGG - chr7.1:4668659-4668678 None:intergenic 45.0%
! ATCACTAGTCTCTAACCCGA+AGG + chr7.1:4668079-4668098 MS.gene050442:intron 45.0%
! CAAACCTTTTCGTGAGTAGG+AGG - chr7.1:4664613-4664632 None:intergenic 45.0%
! CTTGTTGTGAAATACGTGGC+AGG + chr7.1:4668943-4668962 MS.gene050442:intron 45.0%
! CTTTTATGAGCTGCTGTAGG+TGG - chr7.1:4669451-4669470 None:intergenic 45.0%
! GGTCTTTTATGAGCTGCTGT+AGG - chr7.1:4669454-4669473 None:intergenic 45.0%
! GTGCGCATTTTCGTTTGCAT+GGG + chr7.1:4666502-4666521 MS.gene050442:intron 45.0%
! TACTCTAGCTTCTCTTCGCA+TGG + chr7.1:4667850-4667869 MS.gene050442:CDS 45.0%
! TGTGCGCATTTTCGTTTGCA+TGG + chr7.1:4666501-4666520 MS.gene050442:intron 45.0%
! TGTGGTGTACCTTGCGTTTT+TGG - chr7.1:4669306-4669325 None:intergenic 45.0%
! TTTGTTTCGTGGTGGGAATC+AGG + chr7.1:4669118-4669137 MS.gene050442:intron 45.0%
!! CCCGATTCGTTGAATTTTGG+AGG + chr7.1:4669155-4669174 MS.gene050442:CDS 45.0%
!! CTTGTTGTCTTGTTTGGGAG+AGG - chr7.1:4666152-4666171 None:intergenic 45.0%
!! TCTTTCCGTGATGGATCCTA+CGG + chr7.1:4668992-4669011 MS.gene050442:CDS 45.0%
!!! TCCGAGGCCTTTTGTTTTCT+AGG - chr7.1:4669475-4669494 None:intergenic 45.0%
ACATGGCAATGGCTTAAGGC+AGG - chr7.1:4666042-4666061 None:intergenic 50.0%
AGGATGTGTTGCAATGTCCC+CGG - chr7.1:4665917-4665936 None:intergenic 50.0%
CCTCTACAGTCCGAGATGAT+GGG - chr7.1:4665651-4665670 None:intergenic 50.0%
CGAGTTACGGATGGCTTCTA+AGG + chr7.1:4666318-4666337 MS.gene050442:CDS 50.0%
CTAACAGAGCTACTTGACGG+AGG - chr7.1:4667999-4668018 None:intergenic 50.0%
CTGATGCAGAAGTTGCAGAG+AGG + chr7.1:4667750-4667769 MS.gene050442:CDS 50.0%
GATCTGTACTTGCACATGCC+TGG + chr7.1:4667665-4667684 MS.gene050442:intron 50.0%
GTCCCTGTCATGTAGTGTTG+CGG + chr7.1:4665863-4665882 MS.gene050442:intron 50.0%
TACCTAGATGTGGACCAAGG+AGG + chr7.1:4665558-4665577 MS.gene050442:intron 50.0%
TCCCTGTCATGTAGTGTTGC+GGG + chr7.1:4665864-4665883 MS.gene050442:intron 50.0%
TCCTCTACAGTCCGAGATGA+TGG - chr7.1:4665652-4665671 None:intergenic 50.0%
TGAAACACCAGGCACACCAA+AGG + chr7.1:4669015-4669034 MS.gene050442:CDS 50.0%
TGGGGTGCAGTGTACAAAAG+AGG - chr7.1:4665375-4665394 None:intergenic 50.0%
! AGGCGAAAGGGTTGGCAAAA+AGG + chr7.1:4669279-4669298 MS.gene050442:intron 50.0%
! AGTAGCTCTGTTAGAGGTGC+TGG + chr7.1:4668005-4668024 MS.gene050442:intron 50.0%
! CCGTCAAGTAGCTCTGTTAG+AGG + chr7.1:4667999-4668018 MS.gene050442:intron 50.0%
! CGCATTTTCGTTTGCATGGG+AGG + chr7.1:4666505-4666524 MS.gene050442:intron 50.0%
! GCAGAAGGCACAACCATTTG+TGG - chr7.1:4667818-4667837 None:intergenic 50.0%
! GCGGGCTATATTACTTGCCA+GGG + chr7.1:4665882-4665901 MS.gene050442:CDS 50.0%
! GTTGTTTCAGGCGAAAGGGT+TGG + chr7.1:4669271-4669290 MS.gene050442:intron 50.0%
! TCTTGTTTGGGAGAGGACCA+TGG - chr7.1:4666145-4666164 None:intergenic 50.0%
! TGCGGGCTATATTACTTGCC+AGG + chr7.1:4665881-4665900 MS.gene050442:CDS 50.0%
ACACCAGGCACACCAAAGGT+CGG + chr7.1:4669019-4669038 MS.gene050442:intron 55.0%
ACCTCGCGTGAAATGCCATC+AGG - chr7.1:4664425-4664444 None:intergenic 55.0%
ACCTGATGGCATTTCACGCG+AGG + chr7.1:4664421-4664440 MS.gene050442:CDS 55.0%
AGCCCGCAACACTACATGAC+AGG - chr7.1:4665869-4665888 None:intergenic 55.0%
AGGCTACCCCTCCCATATGA+AGG + chr7.1:4667179-4667198 MS.gene050442:intron 55.0%
CCCATCATCTCGGACTGTAG+AGG + chr7.1:4665648-4665667 MS.gene050442:CDS 55.0%
CGTAGCCCTTCATATGGGAG+GGG - chr7.1:4667188-4667207 None:intergenic 55.0%
CTCCTCCTTGGTCCACATCT+AGG - chr7.1:4665563-4665582 None:intergenic 55.0%
GCCCGCAACACTACATGACA+GGG - chr7.1:4665868-4665887 None:intergenic 55.0%
GCGTAGCCCTTCATATGGGA+GGG - chr7.1:4667189-4667208 None:intergenic 55.0%
GGATCCTACGGTGAAACACC+AGG + chr7.1:4669004-4669023 MS.gene050442:CDS 55.0%
GGCTACCCCTCCCATATGAA+GGG + chr7.1:4667180-4667199 MS.gene050442:intron 55.0%
TCATATGGGAGGGGTAGCCT+TGG - chr7.1:4667179-4667198 None:intergenic 55.0%
TGTGCCTGGTGTTTCACCGT+AGG - chr7.1:4669011-4669030 None:intergenic 55.0%
TTCGTTTGCATGGGAGGCAG+CGG + chr7.1:4666511-4666530 MS.gene050442:intron 55.0%
! AGGGGCGTAGCCCTTCATAT+GGG - chr7.1:4667193-4667212 None:intergenic 55.0%
! TTTCCGACCTTTGGTGTGCC+TGG - chr7.1:4669025-4669044 None:intergenic 55.0%
ATGAAGGGCTACGCCCCTGA+TGG + chr7.1:4667195-4667214 MS.gene050442:intron 60.0%
CTTGCCAGGGCTGCATCTTC+CGG + chr7.1:4665895-4665914 MS.gene050442:CDS 60.0%
GGCGTAGCCCTTCATATGGG+AGG - chr7.1:4667190-4667209 None:intergenic 60.0%
TGAAGGGCTACGCCCCTGAT+GGG + chr7.1:4667196-4667215 MS.gene050442:intron 60.0%
TTGCCAGGGCTGCATCTTCC+GGG + chr7.1:4665896-4665915 MS.gene050442:CDS 60.0%
! CAGGGGCGTAGCCCTTCATA+TGG - chr7.1:4667194-4667213 None:intergenic 60.0%
! GCGAAAACGGGCACTGTCCA+TGG + chr7.1:4666125-4666144 MS.gene050442:CDS 60.0%
GTTGCAGAGAGGGCTGTCCC+TGG + chr7.1:4667761-4667780 MS.gene050442:CDS 65.0%
TGCCAGGGCTGCATCTTCCG+GGG + chr7.1:4665897-4665916 MS.gene050442:CDS 65.0%
AGGGCTACGCCCCTGATGGG+AGG + chr7.1:4667199-4667218 MS.gene050442:intron 70.0%
GTCCCCGGAAGATGCAGCCC+TGG - chr7.1:4665902-4665921 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4664326 4669501 4664326 ID=MS.gene050442
chr7.1 mRNA 4664326 4669501 4664326 ID=MS.gene050442.t1;Parent=MS.gene050442
chr7.1 exon 4664326 4664442 4664326 ID=MS.gene050442.t1.exon1;Parent=MS.gene050442.t1
chr7.1 CDS 4664326 4664442 4664326 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4664541 4664627 4664541 ID=MS.gene050442.t1.exon2;Parent=MS.gene050442.t1
chr7.1 CDS 4664541 4664627 4664541 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4664784 4664849 4664784 ID=MS.gene050442.t1.exon3;Parent=MS.gene050442.t1
chr7.1 CDS 4664784 4664849 4664784 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4664934 4664993 4664934 ID=MS.gene050442.t1.exon4;Parent=MS.gene050442.t1
chr7.1 CDS 4664934 4664993 4664934 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4665087 4665143 4665087 ID=MS.gene050442.t1.exon5;Parent=MS.gene050442.t1
chr7.1 CDS 4665087 4665143 4665087 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4665565 4665694 4665565 ID=MS.gene050442.t1.exon6;Parent=MS.gene050442.t1
chr7.1 CDS 4665565 4665694 4665565 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4665878 4665945 4665878 ID=MS.gene050442.t1.exon7;Parent=MS.gene050442.t1
chr7.1 CDS 4665878 4665945 4665878 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4666096 4666188 4666096 ID=MS.gene050442.t1.exon8;Parent=MS.gene050442.t1
chr7.1 CDS 4666096 4666188 4666096 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4666292 4666339 4666292 ID=MS.gene050442.t1.exon9;Parent=MS.gene050442.t1
chr7.1 CDS 4666292 4666339 4666292 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4667713 4667871 4667713 ID=MS.gene050442.t1.exon10;Parent=MS.gene050442.t1
chr7.1 CDS 4667713 4667871 4667713 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4668302 4668412 4668302 ID=MS.gene050442.t1.exon11;Parent=MS.gene050442.t1
chr7.1 CDS 4668302 4668412 4668302 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4668644 4668739 4668644 ID=MS.gene050442.t1.exon12;Parent=MS.gene050442.t1
chr7.1 CDS 4668644 4668739 4668644 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4668965 4669036 4668965 ID=MS.gene050442.t1.exon13;Parent=MS.gene050442.t1
chr7.1 CDS 4668965 4669036 4668965 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4669140 4669176 4669140 ID=MS.gene050442.t1.exon14;Parent=MS.gene050442.t1
chr7.1 CDS 4669140 4669176 4669140 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4669281 4669315 4669281 ID=MS.gene050442.t1.exon15;Parent=MS.gene050442.t1
chr7.1 CDS 4669281 4669315 4669281 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
chr7.1 exon 4669436 4669501 4669436 ID=MS.gene050442.t1.exon16;Parent=MS.gene050442.t1
chr7.1 CDS 4669436 4669501 4669436 ID=cds.MS.gene050442.t1;Parent=MS.gene050442.t1
Gene Sequence

>MS.gene050442

ATGGACGCGAAGGATATTCTTGGTTTGCACAAAAACTCATTTCCATCTTCTCTTGATAATAAAAAATCTCGACCTCCCAAAGAATCTCAGAGAAAACCTGATGGCATTTCACGCGAGGTTAGCTTATTCATTCATTCATTCATTCATTACCGATTCACTTTATTCATTCTTTTTTATTTTTATCACTGATTTTAATTGAATTGTATTATTTTTAGGTTTATGCACTTACTGGTGGAATGCCACCTCTTATGCCATCAATTGATGCTTCTCAATTGAAGAAAAAGCCTCCTACTCACGAAAAGGTTTGAACTTATTTGATTCAACTTATTTATTGACGTAAGCACTTGTGAAGAGGGAAAACAGTTTCCATAAGTCCTTTTCAGCTTATTTTCATAAGCACTTATGTGATACATGCTTTATTAAGATGATTATCCAAACGGGGTTATTATGTTTTTCAGGTTACTTGGCAATGGCTTCCTTTCACCAATTCTGCTCGTAAAGATGATCTTCATCTTTACCATTGGGTCAGTCACAATATGCGATTGATTATTATCTGTGATTATTTATAAGCATGAAAGTTTTTTGTTTATGTGTCGCTTCTTTTTCAGGTTCGAGTAGTCAATGGTGTTCTACCTACTGGAGACTATTCTTTTGCCAAGTACAACAAGGTAGCTAAATTTGTGTTACTCTCTCTCTTCATGCTTCCTATTCATTGCTATATTTTTGGTTTTATTCACAATCTTCTATTTGATGTGATGCAGTCTGTTGACATCATCAAATACACAGACGAGGAATACGAAAAGTATTTGACAGATCCTGTGGGTAATCATGTCTAATTGTACAGTTTTTTGGAAATTTATGGATAAGTTTGCTTAAACTACAACAATGTTGCAAATTTATGCTAACCGAACTGAAATTTATTTTATGTTATGTATCAAGTTGTGATTGTGGGACCTTCATTGACTTCTATTGTAAGTTTAGACATGAAAAATGAGGGGAAATTTGCAATCAATTTATATATCAATGGACCTGGTTATTTGCAAGGACCTCTTTTGTACACTGCACCCCATTGTACAATATATCATATATAATTATCCTGTTTTAACTGCATTTGTTAAGTTCTACGCTTTACTCAATTGAAAGTTTAAACACATAGACATTCTATCAGTTTTTTTGTATTAATCTCCTTTACCAAGTGTTCAATGCATTAATATACCTTATTCTGCTTTATCTACCTAGATGTGGACCAAGGAGGAGACAAATGAATTATTTGATTTGTGTGAGAGGTTCGATCTCCGTTTTGTTGTTATAGCTGATAGGTTCCCATCATCTCGGACTGTAGAGGAGTTAAAGGATCGATATTATAGTGGTACGTCTTTGTTGAATAATTATTATATGCTGCACTCCACAATTCATGTCATTTAACTCAAACTTTCAATTGTTAAAAAAAAAAAAAAAAAAAAACCTTTCAATTCTGATGATATGGAGACTGCATGAGCAAAAATGTGATATTTTGAACTTGATTTTTTTATCACACGTCCCTGTCATGTAGTGTTGCGGGCTATATTACTTGCCAGGGCTGCATCTTCCGGGGACATTGCAACACATCCTATCATTAAGGTGAAGTCAAATTTTATATTAATGTATGATGTTTTTGAAGTAGTTACTCTCTTTTGTCTCTTAGTATATATTTGCCGTTAAAACAGACTCTCACCTGCCTTAAGCCATTGCCATGTGTTGATAGTAACCTGTTCTCTCTTTTCAATGTAGGAACCATATAATGTTTCACAAGAAATGGAGCGAAAACGGGCACTGTCCATGGTCCTCTCCCAAACAAGACAACAAGAGAAAAGAGATGAAGAGGTTCTGTCCTTCAAAGAAAAAAAATAATACTTCATACATTTCTGCCATCGGTTTACCCTCATAATAAATGACGTCTGGTTACTTATATTGTTTTATTTTGCAGGTTCTTATTGAAGCAAAAAGAATAGCCGAGTTACGGATGGCTTCTAAGGTAATTGTTTCAAGATTGATTTACCAATACACCATTAATTTAGGAGTTGTTATCATGATTCAAGGTCAAGTTTCCTATGATCTAATTCTGATTTCTTGATTAATCTTGATTATAAATTCCTATCCATCACTTTGAATATTAGGGAATGTTTCCTAGTATGCTGTGCGCATTTTCGTTTGCATGGGAGGCAGCGGCGAAGCTCGCAAAAAATTTATGCAGGGGCCAACTATAAAGAAATTTTTTTAAAAAAAAAACATATTAAATTCAAGGATAAAATATATTTTTAGTCCCATAAATTATAATTTTTTAGGTTTAGTCCTTAAAAAAATTATCCAATTTTTGTCTCAGTTTTTTAAAATTTTACAAAAAAAAGTGGTTTTAGTCTTGAATTTAATCTCTAACAAAAAATTAAGGACTAAAATTAACAAAATCTTAGGAACTTAACATAAAAATCGCTATTTAGAAACGCTGGGCAAAATGCGTTTCAAGAACCCAATTTCATCAATAATTGTCTGTTTAATAATAGATTAATAATGTCTTTTCAAATGTAAATAAATAGGTTATTTGCAAGAAACTCATTGTCCATTTAATTTGTCTATGATTATTGTCTTGATAATTTTTATTGTTGAAAGAGGTTTCTCTATTGTTGTTATTGAGACCGAAAGTATCAAACCAATACAAATAAATATATCAATCTTGTAGTAATTTTTTTACTTTATTATTTATGCTAATTTTTGCAACTAAATTTATTTGGGGTAGCTCAATGTTTATTATTTAGGGTAGCCGGATGTAAATACATACCGACCACTTCATGAATAATATTTTTTTTGGGGTAGCCAAGGCTACCCCTCCCATATGAAGGGCTACGCCCCTGATGGGAGGTAAACTAAAGTTAGAGCTTTGTAGTCATAGCTTAATCACTATTAATTTTTACTGACAGTAAAATATATGCTGAAGTAGTGTTCTTGAATCACTTGTTCTTGTTTTATACTACCTCCGTTCCTTTTTAAGTGTCACTTTTTAACATTTTACACAAACCAAGACACTCAATAATTGTTACTTTTTCTTATACAATAATCTATACTTTTACTATAATAGCCTTAGTCATTTAATATCTTATTTCATATATTTCTCTCTCCACAATAAATAACTAAGGGTAATGTTGGTAAAACAACATTTATTGTTGCATTGACCTTTGAAAGTGACAGTTAAATAGGAACAAAAAATTTCTCCAAAAGTGACACTTAAAAAGTGACAGTTAAATAGGGAGTAATTACCAATTTGGGGCAACAAAATTTGTGGAATGTATAAAATGTATGTCACATGATCTGTACTTGCACATGCCTGGGATATTGATTTTATACATTTTTCAGGTTACTGAACAGTCTCAATTGGCTGTTGCTTCAAATGCTGATGCAGAAGTTGCAGAGAGGGCTGTCCCTGGTGAAACTGTATCTCCTTCGAATGTGCAACTTCCACAAATGGTTGTGCCTTCTGCAGATAATGCTTCTACTCTAGCTTCTCTTCGCATGGTAAGTTATTTGAGTAAACTACCATTTTGTGTTCTGAAATTGTAAGTGTCTGGCAATTTGGGCACCCTAAATAGCGAAATATCAAATTGCTTCCCTAAATTGTCTAACGACAGTCAAAATGCTTCCTCCGTCAAGTAGCTCTGTTAGAGGTGCTGGTGTATCATGTTAAGCAGAACACTAGGCACAATTTTCATAATGTTGCATTACATCACTAGTCTCTAACCCGAAGGAAATTTGTGCTAGGGCACTAGACAAGCTAACTTAAAACTTCGTTTTGTAGCACTGGCATTAACCAGAATTCTGATCTTCAAAATTTTGATCTTGCATTGATCAAAATATTTCAAATAATTTTTTTTAATGAGGGGCAATTTGCACAATTTATTAAATTCTCATACTTCATAGCATTATCTGATAGTGAGAAATGTTTCAGCTTCGTGTATATTTGAGGACATATGCACTCGAGCAAATGGTGCAAGCTTCAAACTCAACTGCTGGAGTTCGGACTATCAAACGGGTTGAGCAAACATTGCAAGATCTCGGGGTTTGTCCCGACTACCTTAACTTTTTATGCAGCTTGCTTTTCTTTCTTTCTTTCTAAAACATTGCTGACAAATTTATTGCTATTAACCAAATTAACCATCTTTCTTAATACCCATGAATTAGATAGTAGAATCTTATATTGAGGCAGAAATATGTTAAATCCAAATGAAATTTTTGTAACGAGTTGAGTTTGACCATATGTTTGGGTTCATGATGCATTCTGTGATTCCAGGTAAATTTGAAACCGAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAGAGAAATACTAACATGGCTGAATCTCCAGAAACAGGTATATTGGTATAAGAAAGTTGAGAGAATCTTATTTTGCTGAATGTATTCATTCATTCATGTTTATAACCAGATGGTGATTTCACTTGTTAGAATTTTCATGGGCTTGCAATATTCCTGTCTAATGTATGATTGTTTATAGAATCAGCAACATTCTATACTGGCTTATTTTCCCTCACCCCCCAAATTTCTTTGATTTAATTACTTGTTGTGAAATACGTGGCAGGTGCAATATAAAGAGGCCGAAGGTTCATCTTTCCGTGATGGATCCTACGGTGAAACACCAGGCACACCAAAGGTCGGAAATTCATATTTTTATTTCTTTTTACTAGTTTCCCTTCTATTGTTTTAGGCTCGTGGTTTGGAAACTACTGACACATTTGTTTCGTGGTGGGAATCAGGATCGTACATTTATTCCCGATTCGTTGAATTTTGGAGGTAATATATATTAATTTTGTTTGTACCTGCTTTCTAAATTTCTATAAAGTAAGGGAAATGCCATCTATTTATCATTAAACATATGCATAAAACTGTTGTTTCAGGCGAAAGGGTTGGCAAAAAGGACCAAAAACGCAAGGTACACCACAATTTTTTTTGTCTAATTATTCTCCCGTCAATTGATTAATTTTACATTTACTTTTGGACCATTTTAATAATGTACTATTACTGGTTGGTCTCGGGAACTTTATTTGTATAGGGGCATGGAGCTCCACCTACAGCAGCTCATAAAAGACCTAGAAAACAAAAGGCCTCGGATCTTTAA

Protein sequence

>MS.gene050442.t1

MDAKDILGLHKNSFPSSLDNKKSRPPKESQRKPDGISREVYALTGGMPPLMPSIDASQLKKKPPTHEKVTWQWLPFTNSARKDDLHLYHWVRVVNGVLPTGDYSFAKYNKSVDIIKYTDEEYEKYLTDPMWTKEETNELFDLCERFDLRFVVIADRFPSSRTVEELKDRYYSVLRAILLARAASSGDIATHPIIKEPYNVSQEMERKRALSMVLSQTRQQEKRDEEVLIEAKRIAELRMASKVTEQSQLAVASNADAEVAERAVPGETVSPSNVQLPQMVVPSADNASTLASLRMLRVYLRTYALEQMVQASNSTAGVRTIKRVEQTLQDLGVNLKPRVPTKAVCAEHLELRREILTWLNLQKQVQYKEAEGSSFRDGSYGETPGTPKDRTFIPDSLNFGGERVGKKDQKRKGHGAPPTAAHKRPRKQKASDL