Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065646.t1 | XP_003590397.1 | 57.2 | 376 | 31 | 2 | 18 | 263 | 111 | 486 | 3.00E-64 | 255.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065646.t1 | A7UQU9 | 57.2 | 376 | 31 | 2 | 18 | 263 | 111 | 486 | 2.2e-64 | 255.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene065646.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene06042 | MS.gene065646 | 0.80663 | 7.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065646.t1 | MTR_1g061640 | 94.079 | 152 | 4 | 2 | 122 | 271 | 348 | 496 | 3.27e-87 | 268 |
| MS.gene065646.t1 | MTR_1g061640 | 99.180 | 122 | 1 | 0 | 1 | 122 | 94 | 215 | 5.71e-84 | 260 |
| MS.gene065646.t1 | MTR_7g103390 | 83.471 | 121 | 20 | 0 | 1 | 121 | 74 | 194 | 5.48e-69 | 220 |
| MS.gene065646.t1 | MTR_7g103390 | 51.261 | 119 | 52 | 1 | 138 | 256 | 326 | 438 | 2.63e-31 | 120 |
| MS.gene065646.t1 | MTR_1g098920 | 57.258 | 124 | 48 | 2 | 2 | 120 | 92 | 215 | 2.21e-42 | 150 |
| MS.gene065646.t1 | MTR_1g098920 | 48.193 | 83 | 43 | 0 | 177 | 259 | 365 | 447 | 3.80e-19 | 86.7 |
| MS.gene065646.t1 | MTR_2g098080 | 57.258 | 124 | 48 | 2 | 1 | 120 | 81 | 203 | 9.28e-40 | 143 |
| MS.gene065646.t1 | MTR_2g098080 | 45.556 | 90 | 49 | 0 | 169 | 258 | 324 | 413 | 1.21e-18 | 85.5 |
| MS.gene065646.t1 | MTR_6g035315 | 68.000 | 100 | 31 | 1 | 21 | 120 | 110 | 208 | 4.61e-37 | 137 |
| MS.gene065646.t1 | MTR_6g035315 | 52.000 | 75 | 36 | 0 | 183 | 257 | 368 | 442 | 2.79e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065646.t1 | AT3G10040 | 72.358 | 123 | 21 | 2 | 11 | 122 | 86 | 206 | 1.23e-46 | 161 |
| MS.gene065646.t1 | AT3G10040 | 57.732 | 97 | 41 | 0 | 167 | 263 | 322 | 418 | 1.33e-31 | 121 |
| MS.gene065646.t1 | AT1G21200 | 53.472 | 144 | 57 | 3 | 1 | 140 | 85 | 222 | 8.26e-43 | 151 |
| MS.gene065646.t1 | AT1G21200 | 44.737 | 76 | 42 | 0 | 182 | 257 | 364 | 439 | 9.06e-16 | 77.0 |
| MS.gene065646.t1 | AT1G21200 | 53.472 | 144 | 57 | 3 | 1 | 140 | 85 | 222 | 8.26e-43 | 151 |
| MS.gene065646.t1 | AT1G21200 | 44.737 | 76 | 42 | 0 | 182 | 257 | 364 | 439 | 9.06e-16 | 77.0 |
| MS.gene065646.t1 | AT1G76870 | 49.286 | 140 | 59 | 3 | 1 | 140 | 60 | 187 | 2.73e-39 | 141 |
| MS.gene065646.t1 | AT1G76870 | 49.286 | 140 | 59 | 3 | 1 | 140 | 60 | 187 | 2.73e-39 | 141 |
| MS.gene065646.t1 | AT1G76870 | 49.286 | 140 | 59 | 3 | 1 | 140 | 60 | 187 | 2.73e-39 | 141 |
Find 52 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCAGCTTGAAAATT+TGG | 0.110218 | 1.4:+50797679 | None:intergenic |
| TCAAGGGCTATGATGGAAAA+AGG | 0.210514 | 1.4:-50797472 | MS.gene065646:CDS |
| AGTTTAATGATTTGAATAAA+AGG | 0.261559 | 1.4:-50797417 | MS.gene065646:CDS |
| GGTTGTTCAAAGGGTCAAAT+TGG | 0.342793 | 1.4:-50796941 | MS.gene065646:CDS |
| TTGAAAAGCAAAGGTTGAAA+TGG | 0.354388 | 1.4:-50796673 | MS.gene065646:CDS |
| GCTCTGGTGGTGATCCAAAA+AGG | 0.376950 | 1.4:-50797657 | MS.gene065646:CDS |
| CAGTTGGAGGAACAGAAAAT+AGG | 0.378255 | 1.4:-50796719 | MS.gene065646:CDS |
| AATGGTAAGGCTATTGATAA+TGG | 0.397789 | 1.4:-50797596 | MS.gene065646:CDS |
| AAGATTAGAAAATGAGAGAA+TGG | 0.405714 | 1.4:-50796588 | MS.gene065646:CDS |
| TAGCAAGAAAGAGAGGGAAA+TGG | 0.407922 | 1.4:-50796639 | MS.gene065646:CDS |
| ATCTGTTTCAAGGGCTATGA+TGG | 0.408066 | 1.4:-50797479 | MS.gene065646:CDS |
| AAGATGGAGGGAAGAGTCCT+TGG | 0.426883 | 1.4:-50796775 | MS.gene065646:CDS |
| GTCATCATCATCAACACAAT+TGG | 0.442088 | 1.4:-50796834 | MS.gene065646:CDS |
| CACCATGGCAAAGAATGAAA+TGG | 0.442437 | 1.4:-50797627 | MS.gene065646:CDS |
| TAGTGGTTTGCTACAGAAGA+AGG | 0.445493 | 1.4:-50797512 | MS.gene065646:CDS |
| GAAAGTGGAAATCTGTTTCA+AGG | 0.446222 | 1.4:-50797489 | MS.gene065646:CDS |
| TGTAGAGTTGTTGAGAATCA+AGG | 0.448501 | 1.4:-50797355 | MS.gene065646:intron |
| GTCCATTTCATTCTTTGCCA+TGG | 0.478175 | 1.4:+50797625 | None:intergenic |
| TGAAAAGCAAAGGTTGAAAT+GGG | 0.482868 | 1.4:-50796672 | MS.gene065646:CDS |
| AGTGGTGTGTTTCAAGATGG+AGG | 0.493576 | 1.4:-50796788 | MS.gene065646:CDS |
| TTTCAAGCTGAAGAAAGCTC+TGG | 0.499001 | 1.4:-50797673 | MS.gene065646:CDS |
| TCAGGAGAAGGTTGTTCAAA+GGG | 0.503478 | 1.4:-50796950 | MS.gene065646:intron |
| GAGCTAAACTTGAGAATGAA+AGG | 0.504094 | 1.4:-50796613 | MS.gene065646:CDS |
| CAAGATGAAGAAGAGAATGA+TGG | 0.507615 | 1.4:-50796905 | MS.gene065646:CDS |
| TATTACATTGGTGATGAAGC+TGG | 0.519299 | 1.4:-50797568 | MS.gene065646:CDS |
| CATTTCAGCTTGAAAAGCAA+AGG | 0.520923 | 1.4:-50796682 | MS.gene065646:CDS |
| TCAAGGAAAAGAGCAAGAAA+AGG | 0.523804 | 1.4:-50796875 | MS.gene065646:CDS |
| GTGAATGATATACTTGGTAA+AGG | 0.529083 | 1.4:-50797385 | MS.gene065646:CDS |
| AATGAAATGGACTGATACAA+TGG | 0.534079 | 1.4:-50797614 | MS.gene065646:CDS |
| GGTATAGTAGCAAGAAAGAG+AGG | 0.534687 | 1.4:-50796646 | MS.gene065646:CDS |
| AACTTATCTTCACATTGTTG+AGG | 0.538324 | 1.4:+50797436 | None:intergenic |
| ATAATGGCTGTTTATTACAT+TGG | 0.545685 | 1.4:-50797580 | MS.gene065646:CDS |
| AGATGGAGGGAAGAGTCCTT+GGG | 0.547861 | 1.4:-50796774 | MS.gene065646:CDS |
| AAGGAACAGGATAATGCAGT+TGG | 0.551721 | 1.4:-50796735 | MS.gene065646:CDS |
| CAAATGAACAATGAAATAAG+TGG | 0.554110 | 1.4:-50796806 | MS.gene065646:CDS |
| GAACAGGATAATGCAGTTGG+AGG | 0.568779 | 1.4:-50796732 | MS.gene065646:CDS |
| GTGGTGTGTTTCAAGATGGA+GGG | 0.573587 | 1.4:-50796787 | MS.gene065646:CDS |
| CAAGCTGAAGAAAGCTCTGG+TGG | 0.575821 | 1.4:-50797670 | MS.gene065646:CDS |
| GGTGATGAAGCTGGTTCTGA+AGG | 0.576679 | 1.4:-50797559 | MS.gene065646:CDS |
| ATCAGGAGAAGGTTGTTCAA+AGG | 0.577261 | 1.4:-50796951 | MS.gene065646:intron |
| TGCTACAGAAGAAGGGAAAG+TGG | 0.586279 | 1.4:-50797504 | MS.gene065646:CDS |
| TCTAACAAATTTCATCTAGG+TGG | 0.592393 | 1.4:+50796502 | None:intergenic |
| AAGAGAGTGAATGATATACT+TGG | 0.593533 | 1.4:-50797391 | MS.gene065646:CDS |
| AGGAAAAGAGCAAGAAAAGG+AGG | 0.594032 | 1.4:-50796872 | MS.gene065646:CDS |
| AAAGTGGAAATCTGTTTCAA+GGG | 0.595878 | 1.4:-50797488 | MS.gene065646:CDS |
| AGAATGATGGAAAATCATCA+AGG | 0.600165 | 1.4:-50796892 | MS.gene065646:CDS |
| AATGGACTGATACAATGGTA+AGG | 0.602489 | 1.4:-50797609 | MS.gene065646:CDS |
| AGCAAAGGTTGAAATGGGCA+AGG | 0.613121 | 1.4:-50796667 | MS.gene065646:CDS |
| AGTGGTTTGCTACAGAAGAA+GGG | 0.619315 | 1.4:-50797511 | MS.gene065646:CDS |
| GTATAGTAGCAAGAAAGAGA+GGG | 0.621792 | 1.4:-50796645 | MS.gene065646:CDS |
| ATAAGTGGTGTGTTTCAAGA+TGG | 0.626979 | 1.4:-50796791 | MS.gene065646:CDS |
| GTGATGAAGCTGGTTCTGAA+GGG | 0.647076 | 1.4:-50797558 | MS.gene065646:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTAATGATTTGAATAAA+AGG | - | chr1.4:50796797-50796816 | MS.gene065646:CDS | 15.0% |
| ! | AAGATTAGAAAATGAGAGAA+TGG | - | chr1.4:50797626-50797645 | MS.gene065646:CDS | 25.0% |
| ! | ATAATGGCTGTTTATTACAT+TGG | - | chr1.4:50796634-50796653 | MS.gene065646:CDS | 25.0% |
| ! | CAAATGAACAATGAAATAAG+TGG | - | chr1.4:50797408-50797427 | MS.gene065646:CDS | 25.0% |
| !! | ATTCTAAGCATCTTTTCTTT+AGG | - | chr1.4:50796941-50796960 | MS.gene065646:CDS | 25.0% |
| !! | TTCTAAGCATCTTTTCTTTA+GGG | - | chr1.4:50796942-50796961 | MS.gene065646:CDS | 25.0% |
| AAAAACAATGGATAAGGAAC+AGG | - | chr1.4:50797466-50797485 | MS.gene065646:CDS | 30.0% | |
| AAAGTGGAAATCTGTTTCAA+GGG | - | chr1.4:50796726-50796745 | MS.gene065646:CDS | 30.0% | |
| AACTTATCTTCACATTGTTG+AGG | + | chr1.4:50796781-50796800 | None:intergenic | 30.0% | |
| AAGAGAGTGAATGATATACT+TGG | - | chr1.4:50796823-50796842 | MS.gene065646:CDS | 30.0% | |
| AATGGTAAGGCTATTGATAA+TGG | - | chr1.4:50796618-50796637 | MS.gene065646:CDS | 30.0% | |
| AGAATGTTGAAAATTGGAAG+TGG | - | chr1.4:50797168-50797187 | MS.gene065646:intron | 30.0% | |
| CCAAATAAGAAAAAGTCTAG+TGG | - | chr1.4:50796685-50796704 | MS.gene065646:CDS | 30.0% | |
| CTAACTTCATCTTTCATCTT+AGG | + | chr1.4:50796910-50796929 | None:intergenic | 30.0% | |
| CTAAGATGAAAGATGAAGTT+AGG | - | chr1.4:50796908-50796927 | MS.gene065646:CDS | 30.0% | |
| CTTTCTTCAGCTTGAAAATT+TGG | + | chr1.4:50796538-50796557 | None:intergenic | 30.0% | |
| GGTTTGAGAATGTTGAAAAT+TGG | - | chr1.4:50797162-50797181 | MS.gene065646:intron | 30.0% | |
| GTGAATGATATACTTGGTAA+AGG | - | chr1.4:50796829-50796848 | MS.gene065646:CDS | 30.0% | |
| TATCATAATAGTTGTGGTCA+TGG | - | chr1.4:50796976-50796995 | MS.gene065646:intron | 30.0% | |
| TGAAAAGCAAAGGTTGAAAT+GGG | - | chr1.4:50797542-50797561 | MS.gene065646:CDS | 30.0% | |
| TGTGCTTATCATAATAGTTG+TGG | - | chr1.4:50796970-50796989 | MS.gene065646:intron | 30.0% | |
| TTGAAAAGCAAAGGTTGAAA+TGG | - | chr1.4:50797541-50797560 | MS.gene065646:CDS | 30.0% | |
| ! | AAGGAGGATTTTCATTTTCA+AGG | - | chr1.4:50797358-50797377 | MS.gene065646:CDS | 30.0% |
| ! | AGAATGATGGAAAATCATCA+AGG | - | chr1.4:50797322-50797341 | MS.gene065646:intron | 30.0% |
| ! | GGTTTTGCTTATTAGGAAAA+AGG | - | chr1.4:50797647-50797666 | MS.gene065646:CDS | 30.0% |
| ! | TGTTTTCATTCATCTGAGAA+TGG | - | chr1.4:50797108-50797127 | MS.gene065646:intron | 30.0% |
| !! | AATGAAATGGACTGATACAA+TGG | - | chr1.4:50796600-50796619 | MS.gene065646:CDS | 30.0% |
| !! | AGAGAATGGTTTTGCTTATT+AGG | - | chr1.4:50797640-50797659 | MS.gene065646:CDS | 30.0% |
| !! | CCACTAGACTTTTTCTTATT+TGG | + | chr1.4:50796688-50796707 | None:intergenic | 30.0% |
| AATGTTCAACACCAAGTAGA+GGG | - | chr1.4:50797015-50797034 | MS.gene065646:intron | 35.0% | |
| ATAAGTGGTGTGTTTCAAGA+TGG | - | chr1.4:50797423-50797442 | MS.gene065646:CDS | 35.0% | |
| ATTCATCTGAGAATGGTGTA+GGG | - | chr1.4:50797115-50797134 | MS.gene065646:intron | 35.0% | |
| CAAAAAGGAAGATTTCACCA+TGG | - | chr1.4:50796572-50796591 | MS.gene065646:CDS | 35.0% | |
| CAAGATGAAGAAGAGAATGA+TGG | - | chr1.4:50797309-50797328 | MS.gene065646:intron | 35.0% | |
| CATTTCAGCTTGAAAAGCAA+AGG | - | chr1.4:50797532-50797551 | MS.gene065646:CDS | 35.0% | |
| GAAAGTGGAAATCTGTTTCA+AGG | - | chr1.4:50796725-50796744 | MS.gene065646:CDS | 35.0% | |
| GAGCTAAACTTGAGAATGAA+AGG | - | chr1.4:50797601-50797620 | MS.gene065646:CDS | 35.0% | |
| GGGAGAAAAAACAATGGATA+AGG | - | chr1.4:50797460-50797479 | MS.gene065646:CDS | 35.0% | |
| GTATAGTAGCAAGAAAGAGA+GGG | - | chr1.4:50797569-50797588 | MS.gene065646:CDS | 35.0% | |
| GTCATCATCATCAACACAAT+TGG | - | chr1.4:50797380-50797399 | MS.gene065646:CDS | 35.0% | |
| TAATGTTCAACACCAAGTAG+AGG | - | chr1.4:50797014-50797033 | MS.gene065646:intron | 35.0% | |
| TCAAGGAAAAGAGCAAGAAA+AGG | - | chr1.4:50797339-50797358 | MS.gene065646:intron | 35.0% | |
| TGTAGAGTTGTTGAGAATCA+AGG | - | chr1.4:50796859-50796878 | MS.gene065646:CDS | 35.0% | |
| TGTTGAGAATCAAGGTTTGT+TGG | - | chr1.4:50796867-50796886 | MS.gene065646:CDS | 35.0% | |
| ! | CATGGTGAAATCTTCCTTTT+TGG | + | chr1.4:50796574-50796593 | None:intergenic | 35.0% |
| !! | AATGGACTGATACAATGGTA+AGG | - | chr1.4:50796605-50796624 | MS.gene065646:CDS | 35.0% |
| !! | TATTACATTGGTGATGAAGC+TGG | - | chr1.4:50796646-50796665 | MS.gene065646:CDS | 35.0% |
| !! | TCAAGGTTTGTTGGATTCAA+TGG | - | chr1.4:50796876-50796895 | MS.gene065646:CDS | 35.0% |
| !!! | ATCCATTGTTTTTTCTCCCA+AGG | + | chr1.4:50797459-50797478 | None:intergenic | 35.0% |
| AAGGAACAGGATAATGCAGT+TGG | - | chr1.4:50797479-50797498 | MS.gene065646:CDS | 40.0% | |
| AAGTGGAGATGTTGAAGAAG+AGG | - | chr1.4:50797185-50797204 | MS.gene065646:intron | 40.0% | |
| AGAGGATGATGAAGATGAAG+AGG | - | chr1.4:50797203-50797222 | MS.gene065646:intron | 40.0% | |
| AGGAAAAGAGCAAGAAAAGG+AGG | - | chr1.4:50797342-50797361 | MS.gene065646:intron | 40.0% | |
| ATCAGGAGAAGGTTGTTCAA+AGG | - | chr1.4:50797263-50797282 | MS.gene065646:intron | 40.0% | |
| ATCTGTTTCAAGGGCTATGA+TGG | - | chr1.4:50796735-50796754 | MS.gene065646:CDS | 40.0% | |
| CACCATGGCAAAGAATGAAA+TGG | - | chr1.4:50796587-50796606 | MS.gene065646:CDS | 40.0% | |
| CAGTTGGAGGAACAGAAAAT+AGG | - | chr1.4:50797495-50797514 | MS.gene065646:CDS | 40.0% | |
| CATTCATCTGAGAATGGTGT+AGG | - | chr1.4:50797114-50797133 | MS.gene065646:intron | 40.0% | |
| GATGAAGATGAATCAGGAGA+AGG | - | chr1.4:50797252-50797271 | MS.gene065646:intron | 40.0% | |
| GATGAGGATGAAGATGAATC+AGG | - | chr1.4:50797246-50797265 | MS.gene065646:intron | 40.0% | |
| GGTATAGTAGCAAGAAAGAG+AGG | - | chr1.4:50797568-50797587 | MS.gene065646:CDS | 40.0% | |
| GGTTGTTCAAAGGGTCAAAT+TGG | - | chr1.4:50797273-50797292 | MS.gene065646:intron | 40.0% | |
| GTCCATTTCATTCTTTGCCA+TGG | + | chr1.4:50796592-50796611 | None:intergenic | 40.0% | |
| GTCCTTGGGAGAAAAAACAA+TGG | - | chr1.4:50797454-50797473 | MS.gene065646:CDS | 40.0% | |
| TAGCAAGAAAGAGAGGGAAA+TGG | - | chr1.4:50797575-50797594 | MS.gene065646:CDS | 40.0% | |
| TCAGGAGAAGGTTGTTCAAA+GGG | - | chr1.4:50797264-50797283 | MS.gene065646:intron | 40.0% | |
| TTAGGTGTTTCAAGAGGAGA+GGG | - | chr1.4:50797141-50797160 | MS.gene065646:intron | 40.0% | |
| TTTAGGTGTTTCAAGAGGAG+AGG | - | chr1.4:50797140-50797159 | MS.gene065646:intron | 40.0% | |
| TTTCAAGCTGAAGAAAGCTC+TGG | - | chr1.4:50796541-50796560 | MS.gene065646:CDS | 40.0% | |
| ! | CAAGGGCTATGATGGAAAAA+GGG | - | chr1.4:50796743-50796762 | MS.gene065646:CDS | 40.0% |
| ! | GTCAGAGGATTTTTCTGATG+AGG | - | chr1.4:50797230-50797249 | MS.gene065646:intron | 40.0% |
| ! | TCAAGGGCTATGATGGAAAA+AGG | - | chr1.4:50796742-50796761 | MS.gene065646:CDS | 40.0% |
| !! | AGTGGTTTGCTACAGAAGAA+GGG | - | chr1.4:50796703-50796722 | MS.gene065646:CDS | 40.0% |
| !! | TAGTGGTTTGCTACAGAAGA+AGG | - | chr1.4:50796702-50796721 | MS.gene065646:CDS | 40.0% |
| AATAGTTGTGGTCATGGTGC+TGG | - | chr1.4:50796982-50797001 | MS.gene065646:intron | 45.0% | |
| AGATGAAGAGGATGAGTCAG+AGG | - | chr1.4:50797215-50797234 | MS.gene065646:intron | 45.0% | |
| AGCAAAGGTTGAAATGGGCA+AGG | - | chr1.4:50797547-50797566 | MS.gene065646:CDS | 45.0% | |
| AGTGGTGTGTTTCAAGATGG+AGG | - | chr1.4:50797426-50797445 | MS.gene065646:CDS | 45.0% | |
| GAACAGGATAATGCAGTTGG+AGG | - | chr1.4:50797482-50797501 | MS.gene065646:CDS | 45.0% | |
| GAGAATGGTGTAGGGAGTTT+AGG | - | chr1.4:50797123-50797142 | MS.gene065646:intron | 45.0% | |
| GGGAGTTTAGGTGTTTCAAG+AGG | - | chr1.4:50797135-50797154 | MS.gene065646:intron | 45.0% | |
| GTGGTGTGTTTCAAGATGGA+GGG | - | chr1.4:50797427-50797446 | MS.gene065646:CDS | 45.0% | |
| TGCTACAGAAGAAGGGAAAG+TGG | - | chr1.4:50796710-50796729 | MS.gene065646:CDS | 45.0% | |
| ! | TGCTGTTGAGGTTGATTCTG+AGG | + | chr1.4:50797060-50797079 | None:intergenic | 45.0% |
| ! | TGTTGAGGTTGATTCTGAGG+TGG | + | chr1.4:50797057-50797076 | None:intergenic | 45.0% |
| !! | GTGATGAAGCTGGTTCTGAA+GGG | - | chr1.4:50796656-50796675 | MS.gene065646:CDS | 45.0% |
| AAGATGGAGGGAAGAGTCCT+TGG | - | chr1.4:50797439-50797458 | MS.gene065646:CDS | 50.0% | |
| AGATGGAGGGAAGAGTCCTT+GGG | - | chr1.4:50797440-50797459 | MS.gene065646:CDS | 50.0% | |
| GTTCAACACCAAGTAGAGGG+TGG | - | chr1.4:50797018-50797037 | MS.gene065646:intron | 50.0% | |
| TTCCACTTCCACCCTCTACT+TGG | + | chr1.4:50797029-50797048 | None:intergenic | 50.0% | |
| ! | CAAGCTGAAGAAAGCTCTGG+TGG | - | chr1.4:50796544-50796563 | MS.gene065646:CDS | 50.0% |
| ! | GCTCTGGTGGTGATCCAAAA+AGG | - | chr1.4:50796557-50796576 | MS.gene065646:CDS | 50.0% |
| !! | GGTGATGAAGCTGGTTCTGA+AGG | - | chr1.4:50796655-50796674 | MS.gene065646:CDS | 50.0% |
| CACCAAGTAGAGGGTGGAAG+TGG | - | chr1.4:50797024-50797043 | MS.gene065646:intron | 55.0% | |
| ! | AGTTGTGGTCATGGTGCTGG+TGG | - | chr1.4:50796985-50797004 | MS.gene065646:intron | 55.0% |
| TGCTGCTGCTGCTGCTGTTG+AGG | + | chr1.4:50797072-50797091 | None:intergenic | 60.0% | |
| !! | TGTGGTCATGGTGCTGGTGG+TGG | - | chr1.4:50796988-50797007 | MS.gene065646:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 50796517 | 50797719 | 50796517 | ID=MS.gene065646 |
| chr1.4 | mRNA | 50796517 | 50797719 | 50796517 | ID=MS.gene065646.t1;Parent=MS.gene065646 |
| chr1.4 | exon | 50797356 | 50797719 | 50797356 | ID=MS.gene065646.t1.exon1;Parent=MS.gene065646.t1 |
| chr1.4 | CDS | 50797356 | 50797719 | 50797356 | ID=cds.MS.gene065646.t1;Parent=MS.gene065646.t1 |
| chr1.4 | exon | 50796517 | 50796968 | 50796517 | ID=MS.gene065646.t1.exon2;Parent=MS.gene065646.t1 |
| chr1.4 | CDS | 50796517 | 50796968 | 50796517 | ID=cds.MS.gene065646.t1;Parent=MS.gene065646.t1 |
| Gene Sequence |
| Protein sequence |
