AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06042


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06042.t1 MTR_8g099190 96.234 239 9 0 1 239 1 239 4.68e-169 466
MS.gene06042.t1 MTR_8g099190 91.633 251 9 1 1 239 1 251 5.34e-165 456
MS.gene06042.t1 MTR_8g099190 90.377 239 8 1 1 239 1 224 2.67e-154 427
MS.gene06042.t1 MTR_8g099190 95.408 196 9 0 1 196 1 196 7.08e-135 378
MS.gene06042.t1 MTR_5g009720 78.750 240 41 1 1 240 1 230 2.53e-134 377
MS.gene06042.t1 MTR_4g073800 68.831 231 60 2 1 229 1 221 7.49e-110 317
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06042.t1 AT4G11150 72.996 237 54 1 1 237 1 227 2.16e-122 347
MS.gene06042.t1 AT1G64200 70.833 240 66 1 1 240 1 236 2.36e-120 342
MS.gene06042.t1 AT1G64200 70.996 231 63 1 1 231 1 227 9.99e-116 331
MS.gene06042.t1 AT3G08560 63.445 238 75 2 1 236 1 228 1.01e-101 295
MS.gene06042.t1 AT1G64200 69.792 192 54 1 1 192 1 188 1.09e-90 265

Find 37 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAAAAGATCTCATTGTTC+AGG 0.350211 4.1:+4883210 MS.gene06042:CDS
CAGATCCGAAAGCAGCTCTT+TGG 0.391740 4.1:+4885536 MS.gene06042:intron
TTCGTGAGTGTTGTGATGCT+TGG 0.393565 4.1:-4883795 None:intergenic
CAGCTCTGGTGGGGTGGTGT+TGG 0.395029 4.1:+4884227 MS.gene06042:intron
CAATGCAGCTGAATGCTTCT+CGG 0.400725 4.1:+4883053 MS.gene06042:CDS
GGCGGATAAATCTCACCATC+TGG 0.473875 4.1:-4882076 None:intergenic
TCGTGAGTGTTGTGATGCTT+GGG 0.478089 4.1:-4883794 None:intergenic
GCTCACATTCAAAAGTTCCT+TGG 0.486133 4.1:-4883131 None:intergenic
GTGTTGTGATGCTTGGGTGC+AGG 0.495348 4.1:-4883788 None:intergenic
CTTGTCCAAAGAGCTGCTTT+CGG 0.496240 4.1:-4885541 None:intergenic
GTGGTGTTGGCTTCTCGTGA+TGG 0.512785 4.1:+4884240 MS.gene06042:CDS
AATGAAAGAAGTTGCAGCCA+AGG 0.517165 4.1:+4883114 MS.gene06042:CDS
AAATACTCTTGATGCACGGC+TGG 0.517377 4.1:+4884278 MS.gene06042:CDS
CAATATCGAGAAGCTTCAGT+TGG 0.524663 4.1:+4882273 MS.gene06042:CDS
TGGAAAATTCAGCTCTGGTG+GGG 0.526027 4.1:+4884218 MS.gene06042:intron
ACAACACTCACGAACCCTAC+TGG 0.526388 4.1:+4883804 MS.gene06042:CDS
CTTCTGTCTTGTTGAGATGT+CGG 0.530658 4.1:+4883651 MS.gene06042:CDS
TGTGGAAAATTCAGCTCTGG+TGG 0.539041 4.1:+4884216 MS.gene06042:intron
TTGTGGTCAACAATGATCTC+TGG 0.546406 4.1:-4883752 None:intergenic
TGTGCTGGATGCAGCTGCAC+AGG 0.546828 4.1:+4883700 MS.gene06042:CDS
GAACATGAACTTTACCAGTA+GGG 0.549069 4.1:-4883818 None:intergenic
AAAATTCAGCTCTGGTGGGG+TGG 0.550856 4.1:+4884221 MS.gene06042:intron
TATCTTCAACACGGTGATGA+CGG 0.556951 4.1:-4883153 None:intergenic
GATCTCTCTCTCTGCTGAAG+AGG 0.568633 4.1:+4882124 MS.gene06042:CDS
TCGGAAACATGACGTGCACT+TGG 0.572529 4.1:+4883670 MS.gene06042:CDS
TTGTGATGCTTGGGTGCAGG+TGG 0.576383 4.1:-4883785 None:intergenic
CGACATCTCAACAAGACAGA+AGG 0.583156 4.1:-4883650 None:intergenic
GTGGAAAATTCAGCTCTGGT+GGG 0.597030 4.1:+4884217 MS.gene06042:intron
GCACTTGGTAGAACATGTGC+TGG 0.602448 4.1:+4883685 MS.gene06042:CDS
CTCTAAGCAAATCCACCAGA+TGG 0.604393 4.1:+4882061 MS.gene06042:CDS
TGGTCAACAATGATCTCTGG+TGG 0.640783 4.1:-4883749 None:intergenic
AGATCAGACAAGAATACGAG+CGG 0.652146 4.1:+4882314 MS.gene06042:CDS
GGATAAATCTCACCATCTGG+TGG 0.662922 4.1:-4882073 None:intergenic
CATGTAAAATATCTTCAACA+CGG 0.686965 4.1:-4883162 None:intergenic
GTGAAAATACTCTTGATGCA+CGG 0.687449 4.1:+4884274 MS.gene06042:CDS
CAGGTGGAAGATAGACATTG+TGG 0.702848 4.1:-4883769 None:intergenic
TCTTCTCCGAAAATGAACGA+TGG 0.714255 4.1:+4882032 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAAAAAAAAAAAAC+AGG - chr4.1:4882236-4882255 None:intergenic 10.0%
!! ATCTACAAATAATATAAAAT+TGG - chr4.1:4883362-4883381 None:intergenic 10.0%
!!! TTTTTTCAAAAAAAAAAATC+CGG + chr4.1:4882795-4882814 MS.gene06042:intron 10.0%
!! AGACTTCTATTTAAATATTA+AGG + chr4.1:4883842-4883861 MS.gene06042:intron 15.0%
!! ATTTCAGATATTGAATATAT+TGG + chr4.1:4882516-4882535 MS.gene06042:intron 15.0%
!! TTCAAATGATAATTATATAC+TGG + chr4.1:4883507-4883526 MS.gene06042:intron 15.0%
!! TTGTACCAAAAAAAAAAAAA+AGG + chr4.1:4884442-4884461 MS.gene06042:intron 15.0%
!!! ATTCTAAACTTTTGAATTTT+TGG + chr4.1:4884765-4884784 MS.gene06042:intron 15.0%
!!! ATTTTATGTATTTGGTTTAT+TGG + chr4.1:4885306-4885325 MS.gene06042:intron 15.0%
!!! TTAATATTAGATATCAGTTT+TGG + chr4.1:4884177-4884196 MS.gene06042:intron 15.0%
!! AAGTAATTGAATGTAATCAA+AGG - chr4.1:4882772-4882791 None:intergenic 20.0%
!! ATTGTATAGAATGAAAACTT+TGG + chr4.1:4885239-4885258 MS.gene06042:intron 20.0%
!! CTAGTATATTCATGAAAAAT+TGG + chr4.1:4883444-4883463 MS.gene06042:intron 20.0%
!! TGAAATATTGTACGTATTAA+GGG + chr4.1:4884563-4884582 MS.gene06042:intron 20.0%
!! TGAACAGAATATAATTTGAT+GGG - chr4.1:4884915-4884934 None:intergenic 20.0%
!! TTAAATATTAAGGAACTGTA+TGG + chr4.1:4883852-4883871 MS.gene06042:intron 20.0%
!! TTGAAATATTGTACGTATTA+AGG + chr4.1:4884562-4884581 MS.gene06042:intron 20.0%
!! TTGATATATTCTAATTTCTG+TGG + chr4.1:4883004-4883023 MS.gene06042:intron 20.0%
!!! AGATTATATTTTGTTGACTT+TGG + chr4.1:4885214-4885233 MS.gene06042:intron 20.0%
!!! ATGAAAACTTTGGTATTTTT+TGG + chr4.1:4885249-4885268 MS.gene06042:intron 20.0%
!!! CATATTATTTTCAACTAGAA+AGG + chr4.1:4884409-4884428 MS.gene06042:intron 20.0%
!!! TTTTGTTTCTTCTGTTTTAT+GGG + chr4.1:4885453-4885472 MS.gene06042:intron 20.0%
!!! TTTTTGTTTCTTCTGTTTTA+TGG + chr4.1:4885452-4885471 MS.gene06042:intron 20.0%
! AAAGAGAATGATTAGAGAAA+TGG - chr4.1:4882155-4882174 None:intergenic 25.0%
! AAATTATATTCTGTTCACCT+TGG + chr4.1:4884918-4884937 MS.gene06042:intron 25.0%
! AAGAAAATACACATTGAGTA+AGG - chr4.1:4884716-4884735 None:intergenic 25.0%
! AATATAATTTGATGGGAAGT+GGG - chr4.1:4884908-4884927 None:intergenic 25.0%
! AATTGGTTGAAATTGAATTC+TGG + chr4.1:4882459-4882478 MS.gene06042:intron 25.0%
! AGAAGAAACAAAAAAGAATG+TGG - chr4.1:4885446-4885465 None:intergenic 25.0%
! CAAAAAACACAATGAAGATA+CGG - chr4.1:4882695-4882714 None:intergenic 25.0%
! CATGTAAAATATCTTCAACA+CGG - chr4.1:4883165-4883184 None:intergenic 25.0%
! CTACAAATGATAAAGATACT+TGG - chr4.1:4883289-4883308 None:intergenic 25.0%
! CTGATATCTAATATTAAAGC+AGG - chr4.1:4884174-4884193 None:intergenic 25.0%
! GTGAACAGAATATAATTTGA+TGG - chr4.1:4884916-4884935 None:intergenic 25.0%
! TAATTGAAGTTACAAGTATG+TGG + chr4.1:4883567-4883586 MS.gene06042:intron 25.0%
! TACATGTCAGATTAAACTTA+AGG + chr4.1:4882860-4882879 MS.gene06042:intron 25.0%
! TGATAATTATATACTGGCAT+AGG + chr4.1:4883513-4883532 MS.gene06042:intron 25.0%
! TGCAAGATCAAAAGATAATT+AGG - chr4.1:4883261-4883280 None:intergenic 25.0%
!! AATTGGTGAAAATGATCTTT+TGG - chr4.1:4884852-4884871 None:intergenic 25.0%
!! AGATTCTTGTTTACACTTAT+CGG + chr4.1:4883307-4883326 MS.gene06042:intron 25.0%
!! CATGCTAACTTCAATTATTT+TGG - chr4.1:4883545-4883564 None:intergenic 25.0%
!! GTTGAAGATATTTTACATGT+GGG + chr4.1:4883166-4883185 MS.gene06042:CDS 25.0%
!! GTTGTCTCATTTTATGTATT+TGG + chr4.1:4885298-4885317 MS.gene06042:intron 25.0%
!! TATTGTTTCTTCTGTTATGT+GGG + chr4.1:4885143-4885162 MS.gene06042:intron 25.0%
!! TGTTGAAGATATTTTACATG+TGG + chr4.1:4883165-4883184 MS.gene06042:CDS 25.0%
!! TTACTCAATGTGTATTTTCT+TGG + chr4.1:4884715-4884734 MS.gene06042:intron 25.0%
!! TTATTGTTTCTTCTGTTATG+TGG + chr4.1:4885142-4885161 MS.gene06042:intron 25.0%
!! TTGATTAGTTACACATATTC+TGG + chr4.1:4883921-4883940 MS.gene06042:intron 25.0%
!! TTTAGTTGGTTTATTAGTCT+TGG + chr4.1:4885013-4885032 MS.gene06042:intron 25.0%
!! TTTTCTTTCGAATTTCAACT+TGG - chr4.1:4882348-4882367 None:intergenic 25.0%
!!! AGCTGCCTTTTTTTTTTTTT+TGG - chr4.1:4884450-4884469 None:intergenic 25.0%
!!! AGGAAAACTTTGGTATTTTT+TGG + chr4.1:4884950-4884969 MS.gene06042:intron 25.0%
!!! GTTGTCTCATTTTATTTAGT+TGG + chr4.1:4884999-4885018 MS.gene06042:intron 25.0%
!!! TTAGTTGGTTTATTAGTCTT+GGG + chr4.1:4885014-4885033 MS.gene06042:intron 25.0%
!!! TTTTTTTTGTTTCTTCGTGT+AGG + chr4.1:4882246-4882265 MS.gene06042:intron 25.0%
AAAAAACTACCACATATGTG+CGG + chr4.1:4885055-4885074 MS.gene06042:intron 30.0%
AAAATAAACTGGTTAGCATC+TGG + chr4.1:4885484-4885503 MS.gene06042:intron 30.0%
AAATGTTAGAAGTTATCAGG+GGG - chr4.1:4884681-4884700 None:intergenic 30.0%
AAGGTTATTAGTATGCAACA+AGG + chr4.1:4884615-4884634 MS.gene06042:intron 30.0%
AAGTTGTATTAGTGTGTGTT+TGG + chr4.1:4884010-4884029 MS.gene06042:intron 30.0%
AGTTGTATTAGTGTGTGTTT+GGG + chr4.1:4884011-4884030 MS.gene06042:intron 30.0%
ATATAATTTGATGGGAAGTG+GGG - chr4.1:4884907-4884926 None:intergenic 30.0%
ATCTATAGCCAAATCTTCAT+TGG - chr4.1:4885398-4885417 None:intergenic 30.0%
ATGAAAAATTGGAGTGATCA+GGG + chr4.1:4883455-4883474 MS.gene06042:intron 30.0%
ATTACTTTGACATTTGTCTG+TGG + chr4.1:4882436-4882455 MS.gene06042:intron 30.0%
CAAATGTTAGAAGTTATCAG+GGG - chr4.1:4884682-4884701 None:intergenic 30.0%
CAACTAATCACATGTTTAGA+TGG - chr4.1:4884147-4884166 None:intergenic 30.0%
GAAGAAACAATAAAACGATG+TGG - chr4.1:4885135-4885154 None:intergenic 30.0%
GAATATAATTTGATGGGAAG+TGG - chr4.1:4884909-4884928 None:intergenic 30.0%
GCAAATGTTAGAAGTTATCA+GGG - chr4.1:4884683-4884702 None:intergenic 30.0%
TAACATTGAGATTGTGAGAT+CGG - chr4.1:4882494-4882513 None:intergenic 30.0%
TCAATGAGAATCGTTCATTA+AGG - chr4.1:4883483-4883502 None:intergenic 30.0%
TCTAAAAGATCTCATTGTTC+AGG + chr4.1:4883210-4883229 MS.gene06042:CDS 30.0%
TGCAAATGTTAGAAGTTATC+AGG - chr4.1:4884684-4884703 None:intergenic 30.0%
TGCACAAAAAAAATTACCTC+CGG - chr4.1:4884327-4884346 None:intergenic 30.0%
TGTTTCCAAAATATGATGTG+TGG + chr4.1:4882888-4882907 MS.gene06042:intron 30.0%
! AAGTTCCACACATCATATTT+TGG - chr4.1:4882896-4882915 None:intergenic 30.0%
! GAACAATGAGATCTTTTAGA+AGG - chr4.1:4883210-4883229 None:intergenic 30.0%
!! ATAACGGATTGATGAGAATA+TGG - chr4.1:4884882-4884901 None:intergenic 30.0%
!! TAACGGATTGATGAGAATAT+GGG - chr4.1:4884881-4884900 None:intergenic 30.0%
!!! AATTTTTGGCTTGAAAACCA+GGG + chr4.1:4884779-4884798 MS.gene06042:intron 30.0%
AAGTTACAAGTATGTGGACT+AGG + chr4.1:4883573-4883592 MS.gene06042:intron 35.0%
AATGACCAGAAATCAAGCTT+TGG - chr4.1:4882609-4882628 None:intergenic 35.0%
ACTGTATGGATCTGTTAATC+AGG + chr4.1:4883866-4883885 MS.gene06042:intron 35.0%
AGAACATGAACTTTACCAGT+AGG - chr4.1:4883822-4883841 None:intergenic 35.0%
ATGGAAGACGTGTTATATGT+CGG + chr4.1:4882735-4882754 MS.gene06042:intron 35.0%
ATTTGCCAAAGCTTGATTTC+TGG + chr4.1:4882601-4882620 MS.gene06042:intron 35.0%
ATTTGTGGAAAATTCAGCTC+TGG + chr4.1:4884213-4884232 MS.gene06042:intron 35.0%
CATGAAAAATTGGAGTGATC+AGG + chr4.1:4883454-4883473 MS.gene06042:intron 35.0%
CTGTATGGATCTGTTAATCA+GGG + chr4.1:4883867-4883886 MS.gene06042:intron 35.0%
GAACATGAACTTTACCAGTA+GGG - chr4.1:4883821-4883840 None:intergenic 35.0%
GAATGTAATCAAAGGCAAGT+TGG - chr4.1:4882764-4882783 None:intergenic 35.0%
GAGAATATGGGAGGAATAAT+TGG - chr4.1:4884869-4884888 None:intergenic 35.0%
GAGCAGTATAGCAAATACAA+AGG - chr4.1:4884830-4884849 None:intergenic 35.0%
GCATTGAAATTTGATCCTCT+CGG + chr4.1:4882198-4882217 MS.gene06042:intron 35.0%
GGCATAGCTGATTATATTTG+TGG + chr4.1:4884198-4884217 MS.gene06042:intron 35.0%
GGTCATATGACAATCAAAGT+TGG + chr4.1:4885101-4885120 MS.gene06042:intron 35.0%
GTATTAAGGGTAAGATAGCT+GGG + chr4.1:4884576-4884595 MS.gene06042:intron 35.0%
GTGAAAATACTCTTGATGCA+CGG + chr4.1:4884274-4884293 MS.gene06042:CDS 35.0%
TAAATCACGACAGTACCATA+TGG + chr4.1:4884042-4884061 MS.gene06042:intron 35.0%
TATTAAGGGTAAGATAGCTG+GGG + chr4.1:4884577-4884596 MS.gene06042:intron 35.0%
TCCTGTTTACGAGAATATGT+GGG + chr4.1:4884977-4884996 MS.gene06042:intron 35.0%
TGAAAAATTGGAGTGATCAG+GGG + chr4.1:4883456-4883475 MS.gene06042:intron 35.0%
TGACAATCAAAGTTGGCAAT+AGG + chr4.1:4885108-4885127 MS.gene06042:intron 35.0%
TGCTCAGTCAACTAAAAACA+CGG - chr4.1:4883981-4884000 None:intergenic 35.0%
TTGACATTTGTCTGTGGAAT+TGG + chr4.1:4882442-4882461 MS.gene06042:intron 35.0%
! CAAAGGATGATTTGGCAAAT+AGG + chr4.1:4885080-4885099 MS.gene06042:intron 35.0%
!! GGGAAGTGTTGAAAATAAAC+TGG + chr4.1:4885473-4885492 MS.gene06042:intron 35.0%
!! TGACTTTTTCTTCAGCTTCT+TGG - chr4.1:4882100-4882119 None:intergenic 35.0%
!!! GAATTTTTGGCTTGAAAACC+AGG + chr4.1:4884778-4884797 MS.gene06042:intron 35.0%
!!! TTTTTTGGAGTGTCCTATGT+AGG + chr4.1:4885264-4885283 MS.gene06042:intron 35.0%
AATGAAAGAAGTTGCAGCCA+AGG + chr4.1:4883114-4883133 MS.gene06042:CDS 40.0%
ACCCACATATTCTCGTAAAC+AGG - chr4.1:4884981-4885000 None:intergenic 40.0%
ACTCACTGCCACAAACAATT+GGG - chr4.1:4883030-4883049 None:intergenic 40.0%
AGATCAGACAAGAATACGAG+CGG + chr4.1:4882314-4882333 MS.gene06042:CDS 40.0%
AGTGTTCCGTAAAAAGCTTC+CGG + chr4.1:4884305-4884324 MS.gene06042:CDS 40.0%
CAATATCGAGAAGCTTCAGT+TGG + chr4.1:4882273-4882292 MS.gene06042:CDS 40.0%
CACATGAGTGCAAACATATG+TGG - chr4.1:4885370-4885389 None:intergenic 40.0%
CATATGTTTGCACTCATGTG+TGG + chr4.1:4885370-4885389 MS.gene06042:intron 40.0%
CGTATTAAGGGTAAGATAGC+TGG + chr4.1:4884575-4884594 MS.gene06042:intron 40.0%
GATATCTGGGAGGAAAACTT+TGG + chr4.1:4884940-4884959 MS.gene06042:intron 40.0%
GCTCACATTCAAAAGTTCCT+TGG - chr4.1:4883134-4883153 None:intergenic 40.0%
GTCCTGTTTACGAGAATATG+TGG + chr4.1:4884976-4884995 MS.gene06042:intron 40.0%
TACTCACTGCCACAAACAAT+TGG - chr4.1:4883031-4883050 None:intergenic 40.0%
TATCTTCAACACGGTGATGA+CGG - chr4.1:4883156-4883175 None:intergenic 40.0%
TCCTATGTAGGAGAATACGA+GGG + chr4.1:4885276-4885295 MS.gene06042:intron 40.0%
TCTGTTCACCTTGGATATCT+GGG + chr4.1:4884927-4884946 MS.gene06042:intron 40.0%
TGGGTGATGTTGAAAATGAC+TGG + chr4.1:4885162-4885181 MS.gene06042:intron 40.0%
TGTAGAACTGACACTTCTGA+TGG + chr4.1:4882716-4882735 MS.gene06042:intron 40.0%
TGTAGAGTCGTTTGACCATA+TGG - chr4.1:4884060-4884079 None:intergenic 40.0%
TTCTGTTCACCTTGGATATC+TGG + chr4.1:4884926-4884945 MS.gene06042:intron 40.0%
TTGTGGTCAACAATGATCTC+TGG - chr4.1:4883755-4883774 None:intergenic 40.0%
! ACAAAGGTGCAAACAGAGAA+GGG - chr4.1:4884814-4884833 None:intergenic 40.0%
! CTTCTGTCTTGTTGAGATGT+CGG + chr4.1:4883651-4883670 MS.gene06042:CDS 40.0%
! CTTTTTCTTCAGCTTCTTGG+CGG - chr4.1:4882097-4882116 None:intergenic 40.0%
! GAAAATGACTGGTTAGCATC+TGG + chr4.1:4885173-4885192 MS.gene06042:intron 40.0%
! TACAAAGGTGCAAACAGAGA+AGG - chr4.1:4884815-4884834 None:intergenic 40.0%
! TTACCTCCGGAAGCTTTTTA+CGG - chr4.1:4884314-4884333 None:intergenic 40.0%
! TTGTGTCACTATCACATGCA+AGG - chr4.1:4882563-4882582 None:intergenic 40.0%
!! CAGGAGTATTCTGAAAAAGC+AGG + chr4.1:4883719-4883738 MS.gene06042:CDS 40.0%
!! GATTTCTGGTCATTGTCTAG+TGG + chr4.1:4882615-4882634 MS.gene06042:intron 40.0%
!!! GGTCTTCTGCTATTTTGTCT+TGG + chr4.1:4885327-4885346 MS.gene06042:intron 40.0%
AAATACTCTTGATGCACGGC+TGG + chr4.1:4884278-4884297 MS.gene06042:CDS 45.0%
ACCCTCGTATTCTCCTACAT+AGG - chr4.1:4885280-4885299 None:intergenic 45.0%
AGGAGAATTACATTGCCGAG+AGG - chr4.1:4882216-4882235 None:intergenic 45.0%
CAATGCAGCTGAATGCTTCT+CGG + chr4.1:4883053-4883072 MS.gene06042:CDS 45.0%
CAGGTGGAAGATAGACATTG+TGG - chr4.1:4883772-4883791 None:intergenic 45.0%
CGACATCTCAACAAGACAGA+AGG - chr4.1:4883653-4883672 None:intergenic 45.0%
CGGATTGATGAGAATATGGG+AGG - chr4.1:4884878-4884897 None:intergenic 45.0%
CGTAAGAAAGCCTTCTCTGA+TGG + chr4.1:4884121-4884140 MS.gene06042:intron 45.0%
CTCTAAGCAAATCCACCAGA+TGG + chr4.1:4882061-4882080 MS.gene06042:CDS 45.0%
GGATAAATCTCACCATCTGG+TGG - chr4.1:4882076-4882095 None:intergenic 45.0%
GTCCTATGTAGGAGAATACG+AGG + chr4.1:4885275-4885294 MS.gene06042:intron 45.0%
GTGTGGCTCCAATGAAGATT+TGG + chr4.1:4885387-4885406 MS.gene06042:intron 45.0%
GTTTAGATGGCCATCAGAGA+AGG - chr4.1:4884134-4884153 None:intergenic 45.0%
TGGTCAACAATGATCTCTGG+TGG - chr4.1:4883752-4883771 None:intergenic 45.0%
TTCTGTGGCCCAATTGTTTG+TGG + chr4.1:4883019-4883038 MS.gene06042:intron 45.0%
! CAAAGGTGCAAACAGAGAAG+GGG - chr4.1:4884813-4884832 None:intergenic 45.0%
! CTTGTCCAAAGAGCTGCTTT+CGG - chr4.1:4885544-4885563 None:intergenic 45.0%
! GTGGAAAATTCAGCTCTGGT+GGG + chr4.1:4884217-4884236 MS.gene06042:intron 45.0%
! GTTTTCCTCCCAGATATCCA+AGG - chr4.1:4884938-4884957 None:intergenic 45.0%
! TCGTGAGTGTTGTGATGCTT+GGG - chr4.1:4883797-4883816 None:intergenic 45.0%
! TGGAAAATTCAGCTCTGGTG+GGG + chr4.1:4884218-4884237 MS.gene06042:intron 45.0%
! TGTGGAAAATTCAGCTCTGG+TGG + chr4.1:4884216-4884235 MS.gene06042:intron 45.0%
! TTCGTGAGTGTTGTGATGCT+TGG - chr4.1:4883798-4883817 None:intergenic 45.0%
!! ATGAAGCACTGAGAGAGACA+CGG - chr4.1:4882841-4882860 None:intergenic 45.0%
AAGGGTAAGATAGCTGGGGA+GGG + chr4.1:4884581-4884600 MS.gene06042:intron 50.0%
ACAACACTCACGAACCCTAC+TGG + chr4.1:4883804-4883823 MS.gene06042:CDS 50.0%
ACCACATATGTGCGGCTCAA+AGG + chr4.1:4885063-4885082 MS.gene06042:intron 50.0%
CAGATCCGAAAGCAGCTCTT+TGG + chr4.1:4885536-4885555 MS.gene06042:intron 50.0%
GAGAAGGGGAAAAATCTCCC+TGG - chr4.1:4884799-4884818 None:intergenic 50.0%
GATCTCTCTCTCTGCTGAAG+AGG + chr4.1:4882124-4882143 MS.gene06042:CDS 50.0%
GATGGGAAGTGGGGTGATAA+CGG - chr4.1:4884898-4884917 None:intergenic 50.0%
GCACTTGGTAGAACATGTGC+TGG + chr4.1:4883685-4883704 MS.gene06042:CDS 50.0%
GGCGGATAAATCTCACCATC+TGG - chr4.1:4882079-4882098 None:intergenic 50.0%
GTGCGGCTCAAAGGATGATT+TGG + chr4.1:4885072-4885091 MS.gene06042:intron 50.0%
GTTCACCTTGGATATCTGGG+AGG + chr4.1:4884930-4884949 MS.gene06042:intron 50.0%
GTTCCGTAAAAAGCTTCCGG+AGG + chr4.1:4884308-4884327 MS.gene06042:CDS 50.0%
TAAGGGTAAGATAGCTGGGG+AGG + chr4.1:4884580-4884599 MS.gene06042:intron 50.0%
TCCTTTGAGCCGCACATATG+TGG - chr4.1:4885067-4885086 None:intergenic 50.0%
TCGGAAACATGACGTGCACT+TGG + chr4.1:4883670-4883689 MS.gene06042:CDS 50.0%
! AAAATTCAGCTCTGGTGGGG+TGG + chr4.1:4884221-4884240 MS.gene06042:intron 50.0%
! AAGAGCTGCTTTCGGATCTG+TGG - chr4.1:4885536-4885555 None:intergenic 50.0%
ATAGCTGGGGAGGGACTTCA+GGG + chr4.1:4884590-4884609 MS.gene06042:intron 55.0%
CACCAGACACACGTTGACAC+CGG - chr4.1:4882817-4882836 None:intergenic 55.0%
GTGTTGTGATGCTTGGGTGC+AGG - chr4.1:4883791-4883810 None:intergenic 55.0%
TTGTGATGCTTGGGTGCAGG+TGG - chr4.1:4883788-4883807 None:intergenic 55.0%
! ATCCGGTGTCAACGTGTGTC+TGG + chr4.1:4882812-4882831 MS.gene06042:intron 55.0%
!! GTGGTGTTGGCTTCTCGTGA+TGG + chr4.1:4884240-4884259 MS.gene06042:CDS 55.0%
GATAGCTGGGGAGGGACTTC+AGG + chr4.1:4884589-4884608 MS.gene06042:intron 60.0%
TGTGCTGGATGCAGCTGCAC+AGG + chr4.1:4883700-4883719 MS.gene06042:CDS 60.0%
GGGGAGGGACTTCAGGGCTA+AGG + chr4.1:4884596-4884615 MS.gene06042:intron 65.0%
! CAGCTCTGGTGGGGTGGTGT+TGG + chr4.1:4884227-4884246 MS.gene06042:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 4882044 4885574 4882044 ID=MS.gene06042
chr4.1 mRNA 4882044 4885574 4882044 ID=MS.gene06042.t1;Parent=MS.gene06042
chr4.1 exon 4882044 4882145 4882044 ID=MS.gene06042.t1.exon1;Parent=MS.gene06042.t1
chr4.1 CDS 4882044 4882145 4882044 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
chr4.1 exon 4882268 4882368 4882268 ID=MS.gene06042.t1.exon2;Parent=MS.gene06042.t1
chr4.1 CDS 4882268 4882368 4882268 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
chr4.1 exon 4883045 4883231 4883045 ID=MS.gene06042.t1.exon3;Parent=MS.gene06042.t1
chr4.1 CDS 4883045 4883231 4883045 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
chr4.1 exon 4883629 4883825 4883629 ID=MS.gene06042.t1.exon4;Parent=MS.gene06042.t1
chr4.1 CDS 4883629 4883825 4883629 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
chr4.1 exon 4884230 4884329 4884230 ID=MS.gene06042.t1.exon5;Parent=MS.gene06042.t1
chr4.1 CDS 4884230 4884329 4884230 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
chr4.1 exon 4885539 4885574 4885539 ID=MS.gene06042.t1.exon6;Parent=MS.gene06042.t1
chr4.1 CDS 4885539 4885574 4885539 ID=cds.MS.gene06042.t1;Parent=MS.gene06042.t1
Gene Sequence

>MS.gene06042

ATGAACGATGGTGATGTCTCTAAGCAAATCCACCAGATGGTGAGATTTATCCGCCAAGAAGCTGAAGAAAAAGTCAGCGAGATCTCTCTCTCTGCTGAAGAGGTAACGCCATTTCTCTAATCATTCTCTTTTCTCGATCAAGCTTCATTGCATTGCATTGAAATTTGATCCTCTCGGCAATGTAATTCTCCTGTTTTTTTTTTTTTTTTTGTTTCTTCGTGTAGGAATTCAATATCGAGAAGCTTCAGTTGGTTGAAGCTGAGAAGAAGAAGATCAGACAAGAATACGAGCGGAAAGAGCGCCAAGTTGAAATTCGAAAGAAAATGTAATTTTCTCTGAGCTTTTTTTACGCTGTTTTTTTCACTGATAATTTGAACTTTCAATTGTTTTTTATTACTTTGACATTTGTCTGTGGAATTGGTTGAAATTGAATTCTGGTGATCGTTTCCGATCTCACAATCTCAATGTTATAATTTCAGATATTGAATATATTGGCATATATCTTGTTTTTTTTATCCTTGCATGTGATAGTGACACAAAGCATGTTGATTATTATTATTTGCCAAAGCTTGATTTCTGGTCATTGTCTAGTGGATCATTATCGTGATGTTCAGTTAAATGTAGTTTGATGTTTAATTTAGCTTCACTCCGTATCTTCATTGTGTTTTTTGATGTAGAACTGACACTTCTGATGGAAGACGTGTTATATGTCGGACACCAACTTGCCTTTGATTACATTCAATTACTTAATTTTTTTCAAAAAAAAAAATCCGGTGTCAACGTGTGTCTGGTGTCCGTGTCTCTCTCAGTGCTTCATACATGTCAGATTAAACTTAAGGTTTTTTGTTTCCAAAATATGATGTGTGGAACTTTTTTTTTTTTGTGAAACTTAATTTGTTACATGATGTGAATATTGTGCATTTCTGTATTGTTATTCTAAACTTATAAAAATAGTGCTAGTTGATATATTCTAATTTCTGTGGCCCAATTGTTTGTGGCAGTGAGTACTCAATGCAGCTGAATGCTTCTCGGATCAAAGTTCTTCAAGCTCAAGATGACATTGTTAATTCAATGAAAGAAGTTGCAGCCAAGGAACTTTTGAATGTGAGCCGTCATCACCGTGTTGAAGATATTTTACATGTGGGAAATCATGAGTACAGAAACCTTCTAAAAGATCTCATTGTTCAGGTCAGTTAACATTTAAATATTTTACACCTAATTATCTTTTGATCTTGCATTTTGCCAAGTATCTTTATCATTTGTAGATTCTTGTTTACACTTATCGGTAGTGTTGCTGTTACTTACTTACTGTGTTCCAATTTTATATTATTTGTAGATTTTCGTTTGATCTTGAACATTACACTTATTGTTTACACTTATTGAAGTTACAAGTTATATAACTAGTATATTCATGAAAAATTGGAGTGATCAGGGGACCTTAATGAACGATTCTCATTGATTGTTTCAAATGATAATTATATACTGGCATAGGAAGCAACCAAAATAATTGAAGTTAGCATGTTTAATTGAAGTTACAAGTATGTGGACTAGGAGTATAATGTAATATAAGATTTGTACATTGCAGAGTTTGCTAAGACTGAGAGAACCTTCTGTCTTGTTGAGATGTCGGAAACATGACGTGCACTTGGTAGAACATGTGCTGGATGCAGCTGCACAGGAGTATTCTGAAAAAGCAGGTGTTCATCCACCAGAGATCATTGTTGACCACAATGTCTATCTTCCACCTGCACCCAAGCATCACAACACTCACGAACCCTACTGGTAAAGTTCATGTTCTAGACTTCTATTTAAATATTAAGGAACTGTATGGATCTGTTAATCAGGGTCTTGCTTCTTACTCATGTTGTACATTTTTCTTGATTAGTTACACATATTCTGGTCAAAATTAATCAAGAGTTTCAAACATAAGATTACCGTGTTTTTAGTTGACTGAGCATACTTGCTAAAGTTGTATTAGTGTGTGTTTGGGAGACTCGATAAATCACGACAGTACCATATGGTCAAACGACTCTACAATTTGTTGCTTTTGTATTTTCGTGTTGATTTGACATTGAGACGTAAGAAAGCCTTCTCTGATGGCCATCTAAACATGTGATTAGTTGTGTACCTGCTTTAATATTAGATATCAGTTTTGGCATAGCTGATTATATTTGTGGAAAATTCAGCTCTGGTGGGGTGGTGTTGGCTTCTCGTGATGGAAAGATTGTGTGTGAAAATACTCTTGATGCACGGCTGGATGTAGTGTTCCGTAAAAAGCTTCCGGAGGTAATTTTTTTTGTGCATTGCTATTGTCATGTTCTGTGAATCGTTTCTCTTCATTATAATAGTTTGTATTGCTGACTTTCATATTATTTTCAACTAGAAAGGCAGTTATTTTTTGTACCAAAAAAAAAAAAAAGGCAGCTATTTTTATGATATTTGAACTTTGACATTGAAATATAACACTTCAACTGATTCATACTCATACACACTTTGATAAACAACTAAGACAATTAACTTGAAATATTGTACGTATTAAGGGTAAGATAGCTGGGGAGGGACTTCAGGGCTAAGGTTATTAGTATGCAACAAGGAATAAAGTAGTTCTTCAAACAAAACTCTGTGAACTGCTCACCCCCTGATAACTTCTAACATTTGCAATTCTCTTTCCTTACTCAATGTGTATTTTCTTGGATCGTGCTATGCACTTCAGTCGTTAATATTCTAAACTTTTGAATTTTTGGCTTGAAAACCAGGGAGATTTTTCCCCTTCTCTGTTTGCACCTTTGTATTTGCTATACTGCTCCAAAAGATCATTTTCACCAATTATTCCTCCCATATTCTCATCAATCCGTTATCACCCCACTTCCCATCAAATTATATTCTGTTCACCTTGGATATCTGGGAGGAAAACTTTGGTATTTTTTGGAGTGTCCTGTTTACGAGAATATGTGGGTTGTCTCATTTTATTTAGTTGGTTTATTAGTCTTGGGCAATTTCGTCACAGCTTTAAAAAACTACCACATATGTGCGGCTCAAAGGATGATTTGGCAAATAGGTCATATGACAATCAAAGTTGGCAATAGGTCCACATCGTTTTATTGTTTCTTCTGTTATGTGGGTGATGTTGAAAATGACTGGTTAGCATCTGGTGACTAATGAAGTTTCTCAGATTATATTTTGTTGACTTTGGATATTGTATAGAATGAAAACTTTGGTATTTTTTGGAGTGTCCTATGTAGGAGAATACGAGGGTTGTCTCATTTTATGTATTTGGTTTATTGGTCTTCTGCTATTTTGTCTTGGCGTTAAATAAATAAATACCACATATGTTTGCACTCATGTGTGGCTCCAATGAAGATTTGGCTATAGATCATATGATAATTGAAGTTATATTGTCCACATTCTTTTTTGTTTCTTCTGTTTTATGGGAAGTGTTGAAAATAAACTGGTTAGCATCTGGTGACTAATGAAGTTTCTCGCTCACTGCCACAGATCCGAAAGCAGCTCTTTGGACAAGCTGCTGTTTGA

Protein sequence

>MS.gene06042.t1

MNDGDVSKQIHQMVRFIRQEAEEKVSEISLSAEEEFNIEKLQLVEAEKKKIRQEYERKERQVEIRKKIEYSMQLNASRIKVLQAQDDIVNSMKEVAAKELLNVSRHHRVEDILHVGNHEYRNLLKDLIVQSLLRLREPSVLLRCRKHDVHLVEHVLDAAAQEYSEKAGVHPPEIIVDHNVYLPPAPKHHNTHEPYCSGGVVLASRDGKIVCENTLDARLDVVFRKKLPEIRKQLFGQAAV