AlfalfaGEDB | MS.gene065684

M. sativa cultivar XinJiangDaYe / MS.gene065684

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065684.t1	KEH44107.1	90.6	775	65	6	1	774	1	768	1.50E-305	1058.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065684.t1	Q94C77	52.0	793	307	16	4	768	7	753	7.0e-139	496.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065684.t1	A0A072VQM8	90.6	775	65	6	1	774	1	768	1.1e-305	1058.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene065684	MS.gene004601	PPI
MS.gene065684	MS.gene58620	PPI
MS.gene065684	MS.gene00340	PPI
MS.gene073393	MS.gene065684	PPI
MS.gene68882	MS.gene065684	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065684.t1	MTR_1g107460	93.161	775	45	6	1	774	1	768	0.0	1403
MS.gene065684.t1	MTR_4g094958	50.000	770	337	11	22	769	22	765	0.0	702
MS.gene065684.t1	MTR_4g014350	34.403	779	394	18	27	768	23	721	4.76e-130	404
MS.gene065684.t1	MTR_7g070200	34.581	775	405	19	23	768	20	721	3.88e-126	394
MS.gene065684.t1	MTR_1g109580	34.941	767	396	25	23	770	24	706	6.85e-117	369
MS.gene065684.t1	MTR_1g110280	29.215	777	370	24	14	768	19	637	1.25e-76	261
MS.gene065684.t1	MTR_5g083480	30.599	768	408	23	39	768	89	769	3.26e-74	257
MS.gene065684.t1	MTR_5g083480	30.599	768	408	23	39	768	86	766	3.33e-74	257
MS.gene065684.t1	MTR_5g078080	28.297	781	374	22	1	768	3	610	1.28e-65	230
MS.gene065684.t1	MTR_7g073710	30.609	673	309	26	122	768	66	606	1.51e-65	229

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene065684.t1	AT4G34220	51.515	792	318	15	4	771	7	756	0.0	738
MS.gene065684.t1	AT4G37250	50.591	761	354	9	12	768	10	752	0.0	697
MS.gene065684.t1	AT2G15300	50.000	770	311	16	23	768	23	742	0.0	674
MS.gene065684.t1	AT5G67280	47.273	770	365	10	6	770	13	746	0.0	652
MS.gene065684.t1	AT2G23300	50.066	761	336	13	23	770	30	759	0.0	633
MS.gene065684.t1	AT2G01210	35.379	766	409	17	23	772	20	715	2.18e-137	423
MS.gene065684.t1	AT1G25320	36.097	784	394	22	7	768	1	699	2.69e-129	401
MS.gene065684.t1	AT1G66830	34.187	781	399	19	3	768	1	681	5.09e-118	371
MS.gene065684.t1	AT1G67510	34.106	777	406	20	21	768	20	719	2.26e-117	371
MS.gene065684.t1	AT3G57830	30.541	776	367	21	24	768	25	659	1.02e-91	301

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Find 154 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATTGATTCAGGTAT+TGG	0.397525	1.4:-82892519	None:intergenic
AAATGAATACACATCCCATT+TGG	0.344918	1.4:-82894469	None:intergenic
AAATGGGATGTGTATTCATT+TGG	0.349081	1.4:+82894471	MS.gene065684:CDS
AACAGTATCGTTGTAGACAA+CGG	0.576799	1.4:+82893044	MS.gene065684:CDS
AACGATTCTGGTGCTTGATA+TGG	0.355284	1.4:-82894426	None:intergenic
AACGGGAAGCTTCCGAAAGA+AGG	0.506208	1.4:+82893062	MS.gene065684:CDS
AAGATTCGTGGGTTCTGTTG+GGG	0.529754	1.4:+82893311	MS.gene065684:CDS
AAGGCTTCAGCTTATATACT+TGG	0.394917	1.4:+82893137	MS.gene065684:CDS
AAGTTTCAAAGACTGATAAA+GGG	0.480474	1.4:-82891876	None:intergenic
AATATCAACCATAGAGGAAA+TGG	0.385557	1.4:+82894282	MS.gene065684:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAATACACATCCCATT+TGG	-	chr1.4:82894472-82894491	None:intergenic	30.0%
AAATGGGATGTGTATTCATT+TGG	+	chr1.4:82894471-82894490	MS.gene065684:CDS	30.0%
AATATCAACCATAGAGGAAA+TGG	+	chr1.4:82894282-82894301	MS.gene065684:CDS	30.0%
AATGAATACACATCCCATTT+GGG	-	chr1.4:82894471-82894490	None:intergenic	30.0%
ACTAGTGATTCTTCTCAAAA+TGG	+	chr1.4:82892738-82892757	MS.gene065684:CDS	30.0%
AGAACAATTAATTCAACACC+AGG	+	chr1.4:82892690-82892709	MS.gene065684:CDS	30.0%
AGAACCATTGAACAAATTTG+AGG	-	chr1.4:82892358-82892377	None:intergenic	30.0%
CAAGTTTCAAAGACTGATAA+AGG	-	chr1.4:82891880-82891899	None:intergenic	30.0%
CTAATTTGGTTAAGATTCGT+GGG	+	chr1.4:82893300-82893319	MS.gene065684:CDS	30.0%
GAATTCAATAAGATGTTGCT+TGG	-	chr1.4:82894207-82894226	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	82891754	82894764	82891754	ID=MS.gene065684
chr1.4	mRNA	82891754	82894764	82891754	ID=MS.gene065684.t1;Parent=MS.gene065684
chr1.4	exon	82891754	82893398	82891754	ID=MS.gene065684.t1.exon1;Parent=MS.gene065684.t1
chr1.4	CDS	82891754	82893398	82891754	ID=cds.MS.gene065684.t1;Parent=MS.gene065684.t1
chr1.4	exon	82894085	82894764	82894085	ID=MS.gene065684.t1.exon2;Parent=MS.gene065684.t1
chr1.4	CDS	82894085	82894764	82894085	ID=cds.MS.gene065684.t1;Parent=MS.gene065684.t1

Gene Sequence

>MS.gene065684

ATGAAGCTTAACACACTCTTGAGAGTTTCATCTTTTCTTTTTCTTCTACTGCTTCAATATTCATATGCACTTAACTCTGATGGAATTTTGTTGCTTAAATTCAGATACTCCATCCTCAGTGACCCTTTATCAGTCTTTGAAACTTGGAACTATGATGATGCAACTCCATGTTCATGGCATGGAGTTGCATGCAGTGAATTAGGATCTCCTGATACTCCTGATTTTCTTAGAGTAACTAGCTTAATCCTTCCAAATAACCAACTTCTTGGTTCCATTGCAGAAGAATTAGGCCTAATCCAAAACCTTCATCACATTGATCTCTCAGACAATTTCCTCAATGGTTCCTTACCAAACTCTATCTTCAACTCTTCTCAACTACAATTCCTTTCACTCTCCAACAATAAAATCTCAGGTAAACTACCTGAGTTGATTGGTTTATCTACAAACCTTCAAAGTCTAAACCTTTCCGACAATGCCTTTGTTGGGTCAATCCCAAAAAACCTCACTTCTCTACAGAATCTAACCGTTGTTTCTTTGAAAAGTAACTATTTTTCTGGTGAAATTCCAAATGTGTTGAACTCTGTTCAGATTCTAGATCTGTCCTCAAATTTGTTCAATGGTTCTCTTCCAAGTAGCTTCAATGGTGAAAATCTCCAATACTTGAATCTCTCTTATAATAAAATCTCAGGAGCAATTCCAAAAACATTTGCTAAGCACATTCCTGAAAACTCAACAATTGATCTCTCATTCAACAATCTAACAGGACCAATACCTGAATCAATGGCTTTGCTCAATCAAAAAGCAGAATCACTCTCTGGAAACTCTGATCTATGTGGAAAACCTTTGAAGAATCTTTGTATAATCCCCTCTAGTATCTCTACTCCTCCAGAGAACATCAACAACACATCATCTTCACCAGCAATTGCAGCAATACCAAGAACAATTAATTCAACACCAGGAACAAACACAAACTCAACAACATCAACTAGTGATTCTTCTCAAAATGGTCTAAAACCTACTACAATAGCAGCCATTGTTGTAGGTGACATAGCAGGCATGGGAATTTTAGCTCTTATCATTCTTTGTGTGTATCAACAAAGAAAGAAAAGATATCCAAAACCAAACACTGCACTTCATGAGAAGAAAGTGTTGGAAACTGTAGTGAAACAAGACCAAGAAGCTGTGAAAACACAAACACATTCACTTCAATGTTCTCCATGCTGTTTAACGATTAAACAACAAGACGAGACTTCAGAAGATCCAAGCTCTGATGAGAGTGACCGCGACATTAACAGTATCGTTGTAGACAACGGGAAGCTTCCGAAAGAAGGCACGTTGGTAACGGTGGACGGTGAGACGAAGCTGGATTTGGAGACATTGTTGAAGGCTTCAGCTTATATACTTGGAACAAGCCGTGCGAGTATTGTGTATAAAGCGGTTTTAGAGGATGGAAGAGTTTTTGCTGTTAGAAGGATCGGTGAGTGTGGTGTTGAAAGAATGAAGGATTTTGAGAATCAAGTGAGAGCTATTGCTAAGGTTAAGCATCCTAATTTGGTTAAGATTCGTGGGTTCTGTTGGGGTGAAGATGAGAAGCTTGTTATTTCTGATTATGTTCCTAATGGCAGCCTCTCCAGTATTGCTTACAGTAAGTTCACAATATTTTCCTCTGCATTTTGCACAAATTTGTTCAATTATAACAATGCTGATTATGAAATTTGGGACTAACTTAACATATTAAGGACTATTTATAAAATGTTAGTTGTGTTTGGATAAGTATTTTAATTAAAAGTTTATAGCATAAACACTTACAACTCATAAGTTGTTTTCATGAGCTATCCTAAAGAGCTTATGAAAATAAGCTGAAAATAATTTATGTTGAACTATTTATACAAGCTATCATAAATAGTCTCAAAGTGTTTATGCATTGATAAAGTCAAATAGTCTCAAAGTGTTTATGTCTTAATAAAGTCAAATATGTCAATTCAAATAGATTTACTTTCATATTTGTTAGGAATCAAGCAAGTAGAAGAGGTAGGTGTTTATTTTTGGTGCGGTTAGCAATCCACGGATTCATGTAGTTATGAATGTCGATGGTTGTTTGGTCGAAATCAGACGATCTAATATCTAAAGCTCAAAATTTCAGTTATAAAAATCAAAATATGCATTAAAATTTGGATCATTCTATCTCGACCAAAATGAATGCGTTAGCAAATCCAAATCCAAGAGGTGTTGATACTAGATGAACTAAATTGAGGTTTTTTTAACCATTTTTTCTAACTAATTTCTTTAGGTTCATGAAAATTAATAATTGCTTGTGTTAATGATGTTTAGGAAGAGGAGGGTCGTCCCCTATGAACTTATCCTTAGAGGTGCGGTTGAAGATAGCAAAAGGAGTTGCAAGAGGACTAGCTTATCTTCACGAGAAGAAACACATGCATGGCAATGTTAAACCAAGCAACATCTTATTGAATTCAGAATTGGAACCCATCATAAGTGATTTTGGAATTGACTTGCTTCTCTTGAATGATAATATCAACCATAGAGGAAATGGTTCATTTAGACAGTTAGTGAACCAGAGAACCCCACAACCACAACAAGACATTCTCGCTGGTTCAACTCCTAGCCCCTATGGGACAATGGGGCAATCATCATCTACTAGTGGGGGTCAAGTGCCATATCAAGCACCAGAATCGTTTCAAAACATAAAACCAAACCCCAAATGGGATGTGTATTCATTTGGAGTTATTTTGTTGGAGATTTTAAGTGGGAGGGTTTTCTCGGACCGGGAGTTAGACCAATGGTCTATTCCTGGTTCTGTTGAAGAGGAGAAAAACCGGGTTTTGAGAATGGTTGATGTGGCAATTAAGCATGAGATTGAAGGTAGAGAAAATGTGGTGCTCACGTGTTTTAAGTTGGGGTTAAATTGTGTTTCTCTTGTCCCACAAAAGAGACCGTCCATGAAAGAAGCACTACAAATCTTAGAGAAGATGCCTATATTTGGTATTAATTAA

Protein sequence

>MS.gene065684.t1

MKLNTLLRVSSFLFLLLLQYSYALNSDGILLLKFRYSILSDPLSVFETWNYDDATPCSWHGVACSELGSPDTPDFLRVTSLILPNNQLLGSIAEELGLIQNLHHIDLSDNFLNGSLPNSIFNSSQLQFLSLSNNKISGKLPELIGLSTNLQSLNLSDNAFVGSIPKNLTSLQNLTVVSLKSNYFSGEIPNVLNSVQILDLSSNLFNGSLPSSFNGENLQYLNLSYNKISGAIPKTFAKHIPENSTIDLSFNNLTGPIPESMALLNQKAESLSGNSDLCGKPLKNLCIIPSSISTPPENINNTSSSPAIAAIPRTINSTPGTNTNSTTSTSDSSQNGLKPTTIAAIVVGDIAGMGILALIILCVYQQRKKRYPKPNTALHEKKVLETVVKQDQEAVKTQTHSLQCSPCCLTIKQQDETSEDPSSDESDRDINSIVVDNGKLPKEGTLVTVDGETKLDLETLLKASAYILGTSRASIVYKAVLEDGRVFAVRRIGECGVERMKDFENQVRAIAKVKHPNLVKIRGFCWGEDEKLVISDYVPNGSLSSIAYRRGGSSPMNLSLEVRLKIAKGVARGLAYLHEKKHMHGNVKPSNILLNSELEPIISDFGIDLLLLNDNINHRGNGSFRQLVNQRTPQPQQDILAGSTPSPYGTMGQSSSTSGGQVPYQAPESFQNIKPNPKWDVYSFGVILLEILSGRVFSDRELDQWSIPGSVEEEKNRVLRMVDVAIKHEIEGRENVVLTCFKLGLNCVSLVPQKRPSMKEALQILEKMPIFGIN