AlfalfaGEDB | MS.gene68882

M. sativa cultivar XinJiangDaYe / MS.gene68882

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF13041.9 PF14559.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68882.t1	XP_013463303.1	98.2	666	12	0	1	666	80	745	1.50E-173	619.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68882.t1	Q9ZUU3	60.0	448	173	2	1	444	94	539	2.7e-54	214.9

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68882.t1	A0A072V5N3	98.2	666	12	0	1	666	80	745	1.1e-173	619.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052717	MS.gene68882	0.800474	1.42E-48	-1.69E-46
MS.gene053122	MS.gene68882	0.848137	7.42E-60	-1.69E-46
MS.gene056370	MS.gene68882	0.802264	6.09E-49	-1.69E-46

Showing 1 to 3 of 3 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene68882	MS.gene71688	PPI
MS.gene68882	MS.gene029583	PPI
MS.gene68882	MS.gene065684	PPI
MS.gene68882	MS.gene92998	PPI

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68882.t1	MTR_2g437460	98.048	666	13	0	1	666	80	745	0.0	1352
MS.gene68882.t1	MTR_7g044790	33.841	656	417	8	1	646	65	713	1.04e-119	374
MS.gene68882.t1	MTR_5g031740	24.762	630	430	8	31	630	75	690	2.57e-52	194
MS.gene68882.t1	MTR_5g031740	22.764	615	413	8	55	608	221	834	3.58e-39	155
MS.gene68882.t1	MTR_5g031740	25.000	468	303	12	20	450	429	885	3.44e-31	130
MS.gene68882.t1	MTR_5g031740	22.605	522	375	8	41	537	313	830	3.82e-25	111
MS.gene68882.t1	MTR_5g031740	21.854	453	312	8	99	519	440	882	2.26e-21	99.8
MS.gene68882.t1	MTR_5g090210	25.906	552	392	5	96	639	170	712	3.99e-52	192
MS.gene68882.t1	MTR_5g090210	26.572	493	348	5	65	552	244	727	9.89e-51	188
MS.gene68882.t1	MTR_5g090210	23.226	465	341	7	195	654	168	621	7.43e-30	126

Showing 1 to 10 of 1,183 entries

Previous1 2 3 4 5…119Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68882.t1	AT2G37230	65.443	654	218	3	1	648	94	745	0.0	908
MS.gene68882.t1	AT1G02060	33.819	618	394	8	39	644	81	695	1.54e-109	347
MS.gene68882.t1	AT1G74580	26.252	579	370	10	32	562	9	578	1.63e-52	194
MS.gene68882.t1	AT1G74580	24.119	539	390	8	64	595	221	747	2.97e-39	155
MS.gene68882.t1	AT1G74580	23.716	409	296	5	53	457	350	746	6.19e-32	132
MS.gene68882.t1	AT1G74580	26.252	579	370	10	32	562	9	578	1.63e-52	194
MS.gene68882.t1	AT1G74580	24.119	539	390	8	64	595	221	747	2.97e-39	155
MS.gene68882.t1	AT1G74580	23.716	409	296	5	53	457	350	746	6.19e-32	132
MS.gene68882.t1	AT1G74580	26.252	579	370	10	32	562	9	578	1.63e-52	194
MS.gene68882.t1	AT1G74580	24.119	539	390	8	64	595	221	747	2.97e-39	155

Showing 1 to 10 of 1,379 entries

Previous1 2 3 4 5…138Next

Find 163 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGAAAGCAAGTAGAG+CGG	0.698419	2.3:-54254381	MS.gene68882:CDS
AACATGACCTCTAATGAAAA+GGG	0.516074	2.3:+54254775	None:intergenic
AACCAGATTCGTCCCTTTAC+AGG	0.282071	2.3:-54254916	MS.gene68882:CDS
AACGAGATTTGAATCGAATT+TGG	0.186236	2.3:+54256296	None:intergenic
AAGCAGAGTAATGAAATGTA+TGG	0.574330	2.3:-54254849	MS.gene68882:CDS
AAGCTTTAAAATTCTACCGA+TGG	0.543646	2.3:-54256233	MS.gene68882:CDS
AATGAAATGTATGGTGGAGA+AGG	0.558398	2.3:-54254840	MS.gene68882:CDS
ACAAACATATCTTCATCATA+AGG	0.479700	2.3:+54256084	None:intergenic
ACGTATAATACTTTGATTCA+TGG	0.361791	2.3:-54255766	MS.gene68882:CDS
ACGTTTACTACGTTGTTGCC+AGG	0.390811	2.3:-54255556	MS.gene68882:CDS

Showing 1 to 10 of 163 entries

Previous1 2 3 4 5…17Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACATGACCTCTAATGAAAA+GGG	+	chr2.3:54255958-54255977	None:intergenic	30.0%
AACGAGATTTGAATCGAATT+TGG	+	chr2.3:54254437-54254456	None:intergenic	30.0%
AAGCAGAGTAATGAAATGTA+TGG	-	chr2.3:54255881-54255900	MS.gene68882:CDS	30.0%
AGTGTCATGAATGAAAAGAT+TGG	+	chr2.3:54254533-54254552	None:intergenic	30.0%
ATGAAAACCGAATTATCCTT+AGG	+	chr2.3:54255270-54255289	None:intergenic	30.0%
GTTGATTGAGAATTTCTGTA+AGG	-	chr2.3:54255398-54255417	MS.gene68882:CDS	30.0%
TATAATGCTATGTTGAGAGA+AGG	-	chr2.3:54254817-54254836	MS.gene68882:CDS	30.0%
TATTGCTCCTAAGGATAATT+CGG	-	chr2.3:54255260-54255279	MS.gene68882:CDS	30.0%
TGAAATTAGATACTGCTGTT+AGG	-	chr2.3:54254896-54254915	MS.gene68882:CDS	30.0%
TGTAAAATTATGGAGAAACG+AGG	-	chr2.3:54256200-54256219	MS.gene68882:CDS	30.0%

Showing 1 to 10 of 197 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	54254376	54256376	54254376	ID=MS.gene68882
chr2.3	mRNA	54254376	54256376	54254376	ID=MS.gene68882.t1;Parent=MS.gene68882
chr2.3	exon	54254376	54256376	54254376	ID=MS.gene68882.t1.exon1;Parent=MS.gene68882.t1
chr2.3	CDS	54254376	54256376	54254376	ID=cds.MS.gene68882.t1;Parent=MS.gene68882.t1

Gene Sequence

>MS.gene68882

ATGCTCACAAACCGCGTTTGGACAACTCGCCTCCAACACTCAATCCGCTCCGTCGTCTCCAAATTCGATTCAAATCTCGTTTACAACATCCTTCACTCCACCGCCGCCGCAAATCCTGATCAAGCTTTAAAATTCTACCGATGGCTCGAAAGATCCAATCTTTTCATTCATGACACTAACACCACTCTCAAAATGCTTCAAATCCTAACCCGTTATAACAAACTCAACCACGCCCGTTGTATTCTACTTGATTTACCTAAAAAGGGGCTACCTTATGATGAAGATATGTTTGTTGCTTTGATCGAAGGCTATGGTCGTGCTGGGATTGTTCAGGAAGCTGTTAAGATTTTTCAGAAGTGTGATCAAAAGAGTGTTAAGGCTTATGATGCTTTGTTTAAGGTGATTTTGAGGAGGGGGAGGTATATGATGGCGAAACGGGTTTATAATGCTATGTTGAGAGAAGGTATTGAACCTACTAGACATACTTATAATATTCTGCTTTGGGGTATGTTTTTGTCTTTGAAATTAGATACTGCTGTTAGGTTTTATGATGATATGAAAAGTAGGGGTATTGAGCCTGATGTTGTGACGTATAATACTTTGATTCATGGGTTTTTTCGGTTTAAGAAAGTTGATGAGGCAGAGAGTTTGTTTGTGGAGATGAAAGGGAAGAATTTGATGCCCAATGTGATTAGTTATACTACTATGTTGAAAGGGTTTGTTGATGTGGGGAAGGTTGATAGGGCGTTTGAGGTTTTTGAGGAGATGAAGGATAATGGGATTAAGCCGAATGCTGTTACGTTTACTACGTTGTTGCCAGGGTTGTGTGATGCTGATAAAATGGTGGAGGCAGGGAATGTTTTGGGGGAGATGGTGGAGAGGTATATTGCTCCTAAGGATAATTCGGTTTTCATGAAGTTGATGGAGTGTCAGTGTAAAGGCGGGAACTTGGATGCTGCGGCGGATGTGTTGAAGGCGATGGTTAGGTTGAGTATTCCTACGGAGGCGGGTCATTATGGTGTGTTGATTGAGAATTTCTGTAAGGCTAATGTGTATGATCGGGCGGAGAAATTGTTGGATAAGTTGATTGAGAAGGATATTGTGTTGAGGCCGGAGAATTCCTATGAAATGGAAGCTAGTGCTTATAACCGGATGATTGAGTATCTGTGTGACAATGGGAAGACGGCGAAAGCGGAAACGTTTTTTCGGCAGTTGATGAAAAAGGGTGTTCTGGATCCAGTTGCTTTTAATAATTTGATGTGTGGACACTCGAAAGAAGGAAACCCTGAATCTGCACTTGAGATTGCTACGATCATGAGTAGGAGAAAGGTTCATAGTGATGCATATTCCTATAGATTGCTTATCGAGAGTTACTTGAGAAAAGGAGAACCTGCTGATGCTAAAACAGCTTTGGACCACATGCTTGAAGGTGGACATGAACCAGATTCGTCCCTTTACAGGTCAGTTATGGAGAGTTTGTTTGAAGATGGCAGGGTCCAAACTGCAAGCAGAGTAATGAAATGTATGGTGGAGAAGGGGGTGAAGGAGAATATGGACTTGGTTTCGAAGATATTGGAGGCCCTTTTCATTAGAGGTCATGTTGAAGAAGCTTTGGGGAGAATTGATTTGCTTATGAACAGTGGGTGTGAGCCTGATTTTGACCACCTTCTATCCATTCTCTGTGAGAAAGAAAAGAGGATTGCTGCTCTCAGATTGTTAGATTTTGTTCTTGAGAGAGACATCATCATTGACTTTTCAAACTATGATAAGGTTTTAGACACTCTCTTAGCAGCAGGAAAGACCCTCAACGCATATTCCATCTTATGTAAAATTATGGAGAAACGAGGTGCAACAGATTGGAGCAGCCGTGATGAGCTGATCAAGAGCCTTAATCAGCAAGGGAACACAAAGCAAGCAGATGTCTTGTCGAGAATGGTCAAAGAAAAAGTGGCAAGTCCTCCAAAGAAAGAGGGAAAGAAGAAAGCAAGTAGAGCGGCATAA

Protein sequence

>MS.gene68882.t1

MLTNRVWTTRLQHSIRSVVSKFDSNLVYNILHSTAAANPDQALKFYRWLERSNLFIHDTNTTLKMLQILTRYNKLNHARCILLDLPKKGLPYDEDMFVALIEGYGRAGIVQEAVKIFQKCDQKSVKAYDALFKVILRRGRYMMAKRVYNAMLREGIEPTRHTYNILLWGMFLSLKLDTAVRFYDDMKSRGIEPDVVTYNTLIHGFFRFKKVDEAESLFVEMKGKNLMPNVISYTTMLKGFVDVGKVDRAFEVFEEMKDNGIKPNAVTFTTLLPGLCDADKMVEAGNVLGEMVERYIAPKDNSVFMKLMECQCKGGNLDAAADVLKAMVRLSIPTEAGHYGVLIENFCKANVYDRAEKLLDKLIEKDIVLRPENSYEMEASAYNRMIEYLCDNGKTAKAETFFRQLMKKGVLDPVAFNNLMCGHSKEGNPESALEIATIMSRRKVHSDAYSYRLLIESYLRKGEPADAKTALDHMLEGGHEPDSSLYRSVMESLFEDGRVQTASRVMKCMVEKGVKENMDLVSKILEALFIRGHVEEALGRIDLLMNSGCEPDFDHLLSILCEKEKRIAALRLLDFVLERDIIIDFSNYDKVLDTLLAAGKTLNAYSILCKIMEKRGATDWSSRDELIKSLNQQGNTKQADVLSRMVKEKVASPPKKEGKKKASRAA