Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065686.t1 | XP_013470067.1 | 97.5 | 283 | 7 | 0 | 1 | 283 | 1 | 283 | 7.60E-143 | 516.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065686.t1 | Q9SHU7 | 66.5 | 269 | 77 | 2 | 18 | 283 | 38 | 296 | 4.7e-85 | 315.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065686.t1 | A0A072W1E4 | 97.5 | 283 | 7 | 0 | 1 | 283 | 1 | 283 | 5.5e-143 | 516.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050333 | MS.gene065686 | 0.80087 | 1.18E-48 | -1.69E-46 |
| MS.gene054374 | MS.gene065686 | 0.823501 | 1.34E-53 | -1.69E-46 |
| MS.gene055638 | MS.gene065686 | 0.800846 | 1.19E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065686.t1 | MTR_1g107450 | 97.527 | 283 | 7 | 0 | 1 | 283 | 1 | 283 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065686.t1 | AT2G15290 | 68.077 | 260 | 70 | 2 | 27 | 283 | 47 | 296 | 3.23e-115 | 333 |
Find 67 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATTCATTTCAGTGTTT+TGG | 0.190891 | 1.4:-82873000 | MS.gene065686:CDS |
| GATTAGGTAGCTTAGGGTTT+TGG | 0.244550 | 1.4:-82873135 | MS.gene065686:CDS |
| GGGATGGGATCTGCTATTCT+TGG | 0.261286 | 1.4:-82872584 | MS.gene065686:CDS |
| CTCTGCCAACCCATATTATC+AGG | 0.265678 | 1.4:-82872516 | MS.gene065686:CDS |
| GGAGCGATTCCCTGATAATA+TGG | 0.296780 | 1.4:+82872506 | None:intergenic |
| TGGTATAGCATTGAACCTTT+TGG | 0.302115 | 1.4:-82872606 | MS.gene065686:CDS |
| GAAGAACTGTTCAATTTAAG+AGG | 0.370176 | 1.4:+82873421 | None:intergenic |
| CAATCCTTTCTCATTTCCTT+GGG | 0.382936 | 1.4:-82871720 | MS.gene065686:CDS |
| CTAACGCCGGCACCGTGTTC+CGG | 0.385142 | 1.4:-82873535 | MS.gene065686:CDS |
| AGAAATGAAGGAACTGAAAG+AGG | 0.389344 | 1.4:+82873396 | None:intergenic |
| ACAATCCTTTCTCATTTCCT+TGG | 0.393630 | 1.4:-82871721 | MS.gene065686:CDS |
| TGTGTAGGTGGCGAAGAGAT+TGG | 0.399741 | 1.4:-82873182 | MS.gene065686:intron |
| TTCAAGCGATTAGGTAGCTT+AGG | 0.400195 | 1.4:-82873142 | MS.gene065686:CDS |
| CACTCCTTCCAACGAAGAAT+CGG | 0.416433 | 1.4:-82873314 | MS.gene065686:CDS |
| CCTTCATTTCTCATCGTCAA+TGG | 0.425680 | 1.4:-82873384 | MS.gene065686:CDS |
| ACCGTGTTCCGGCAGGTTCA+CGG | 0.430996 | 1.4:-82873524 | MS.gene065686:CDS |
| CCTTATGCAAACTTCAGAAA+TGG | 0.431667 | 1.4:+82871640 | None:intergenic |
| GTAGTTAAAAGCTTACAAAA+TGG | 0.434722 | 1.4:-82872626 | MS.gene065686:CDS |
| GCGAGGCATTTCAAGCGATT+AGG | 0.439777 | 1.4:-82873151 | MS.gene065686:CDS |
| CCATTTCTGAAGTTTGCATA+AGG | 0.443202 | 1.4:-82871640 | None:intergenic |
| GGGAAGACGAGGGACGGAAA+TGG | 0.461563 | 1.4:+82873480 | None:intergenic |
| AAGACATCTAATGCGAGAAC+AGG | 0.464297 | 1.4:+82872473 | None:intergenic |
| GCTGTAGCATAAAACGTTGC+CGG | 0.476279 | 1.4:+82873037 | None:intergenic |
| TCAAGCGATTAGGTAGCTTA+GGG | 0.479000 | 1.4:-82873141 | MS.gene065686:CDS |
| GGATGGGATCTGCTATTCTT+GGG | 0.479726 | 1.4:-82872583 | MS.gene065686:CDS |
| CGCCGGCACCGTGTTCCGGC+AGG | 0.498649 | 1.4:-82873531 | MS.gene065686:CDS |
| AACCTGCCGGAACACGGTGC+CGG | 0.519126 | 1.4:+82873529 | None:intergenic |
| TATTATCAGGGAATCGCTCC+TGG | 0.521565 | 1.4:-82872503 | MS.gene065686:CDS |
| GCCGTGAACCTGCCGGAACA+CGG | 0.522890 | 1.4:+82873523 | None:intergenic |
| CTTGGGATGCAAGCCACAGT+TGG | 0.527632 | 1.4:-82872566 | MS.gene065686:CDS |
| GAAATGAAGGAACTGAAAGA+GGG | 0.531980 | 1.4:+82873397 | None:intergenic |
| AGTTGGATTCTTAGTTGCAA+AGG | 0.532071 | 1.4:-82872549 | MS.gene065686:CDS |
| TTCAATTTAAGAGGGAGTGA+GGG | 0.544352 | 1.4:+82873430 | None:intergenic |
| GAGCGATTCCCTGATAATAT+GGG | 0.545660 | 1.4:+82872507 | None:intergenic |
| AGAAGAAGCGGTTACTGTGA+AGG | 0.546077 | 1.4:+82873354 | None:intergenic |
| GAAGCCCAAGGAAATGAGAA+AGG | 0.552017 | 1.4:+82871716 | None:intergenic |
| TAGCAGATCCCATCCCCAAA+AGG | 0.554594 | 1.4:+82872591 | None:intergenic |
| CCATTGACGATGAGAAATGA+AGG | 0.558196 | 1.4:+82873384 | None:intergenic |
| GAAGAAGCGGTTACTGTGAA+GGG | 0.558789 | 1.4:+82873355 | None:intergenic |
| TTTAACTACATCAGATCGAG+GGG | 0.565750 | 1.4:+82872640 | None:intergenic |
| TGGCGCCGCCGTGAACCTGC+CGG | 0.569949 | 1.4:+82873516 | None:intergenic |
| CTGATAATATGGGTTGGCAG+AGG | 0.570282 | 1.4:+82872517 | None:intergenic |
| TGCAGAGGATTGAGAAGAAG+CGG | 0.571740 | 1.4:+82873342 | None:intergenic |
| AAGAACTGTTCAATTTAAGA+GGG | 0.578373 | 1.4:+82873422 | None:intergenic |
| AGAATTGTTCGGGGAAGACG+AGG | 0.581441 | 1.4:+82873469 | None:intergenic |
| GTTCAATTTAAGAGGGAGTG+AGG | 0.594846 | 1.4:+82873429 | None:intergenic |
| TGTTCGGGGAAGACGAGGGA+CGG | 0.600639 | 1.4:+82873474 | None:intergenic |
| GCTATATTCGCCTCTCTGAG+AGG | 0.604639 | 1.4:-82872970 | MS.gene065686:CDS |
| GAAATGGCTGAGATTGAGAG+TGG | 0.616067 | 1.4:+82873496 | None:intergenic |
| GCGAGAACAGGACTTGAACC+AGG | 0.619241 | 1.4:+82872485 | None:intergenic |
| CCAGCGAGAAAAGAAGCCCA+AGG | 0.620312 | 1.4:+82871704 | None:intergenic |
| GGAAGGAGTGAAAGCTGCAG+AGG | 0.633093 | 1.4:+82873327 | None:intergenic |
| TCAATTTAAGAGGGAGTGAG+GGG | 0.636040 | 1.4:+82873431 | None:intergenic |
| GATTCCCTGATAATATGGGT+TGG | 0.640688 | 1.4:+82872511 | None:intergenic |
| AGAAATGGAAGAGCTTCTGA+CGG | 0.648983 | 1.4:+82871655 | None:intergenic |
| TCTGCCAACCCATATTATCA+GGG | 0.650984 | 1.4:-82872515 | MS.gene065686:CDS |
| TACCGGAAAAGTGACATCGC+CGG | 0.662744 | 1.4:-82873056 | MS.gene065686:CDS |
| AGAGAGGCGAATATAGCCAA+AGG | 0.665331 | 1.4:+82872976 | None:intergenic |
| GAATTGTTCGGGGAAGACGA+GGG | 0.667717 | 1.4:+82873470 | None:intergenic |
| TGCAACTAAGAATCCAACTG+TGG | 0.672275 | 1.4:+82872553 | None:intergenic |
| AATGGAAGAGCTTCTGACGG+CGG | 0.675113 | 1.4:+82871658 | None:intergenic |
| AACTGCAAATGATCCTACCA+AGG | 0.682014 | 1.4:-82872939 | MS.gene065686:intron |
| TTCTACGAAGCCTCTCAGAG+AGG | 0.714642 | 1.4:+82872960 | None:intergenic |
| AATGCAAACTCTTCTAACGC+CGG | 0.716376 | 1.4:-82873548 | MS.gene065686:CDS |
| TTAACTACATCAGATCGAGG+GGG | 0.724482 | 1.4:+82872641 | None:intergenic |
| AGAGATTGGAGAAAACTGCG+AGG | 0.729408 | 1.4:-82873168 | MS.gene065686:CDS |
| GTGTTCCGGCAGGTTCACGG+CGG | 0.774246 | 1.4:-82873521 | MS.gene065686:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTGTTAAATAAGAAATT+AGG | - | chr1.4:82872998-82873017 | MS.gene065686:CDS | 10.0% |
| !! | AATTGTTAAATAAGAAATTA+GGG | - | chr1.4:82872999-82873018 | MS.gene065686:CDS | 10.0% |
| !!! | TCAATTTTTTTTAATAGAAA+TGG | - | chr1.4:82873198-82873217 | MS.gene065686:intron | 10.0% |
| !! | ATTGTTAAATAAGAAATTAG+GGG | - | chr1.4:82873000-82873019 | MS.gene065686:CDS | 15.0% |
| !! | TTAGTTATTATTTACAATGT+TGG | - | chr1.4:82872498-82872517 | MS.gene065686:CDS | 15.0% |
| !! | AATATTATTCTTTCCTTTAC+AGG | - | chr1.4:82873434-82873453 | MS.gene065686:CDS | 20.0% |
| !! | ATTAACATTATTAGCAAAGA+AGG | + | chr1.4:82872860-82872879 | None:intergenic | 20.0% |
| !! | GAAATTGAATTCAATTTCTA+GGG | - | chr1.4:82871953-82871972 | MS.gene065686:intron | 20.0% |
| !! | TGAAATTGAATTCAATTTCT+AGG | - | chr1.4:82871952-82871971 | MS.gene065686:intron | 20.0% |
| !!! | ATGAATAATTGAATTTGCTT+AGG | - | chr1.4:82872297-82872316 | MS.gene065686:intron | 20.0% |
| ! | AAGAACTGTTCAATTTAAGA+GGG | + | chr1.4:82871770-82871789 | None:intergenic | 25.0% |
| ! | ACAACTTAATTAAACGCTTA+TGG | - | chr1.4:82872378-82872397 | MS.gene065686:intron | 25.0% |
| ! | CAATGGTAAACTATGTATAA+GGG | - | chr1.4:82872898-82872917 | MS.gene065686:intron | 25.0% |
| ! | GTAGTTAAAAGCTTACAAAA+TGG | - | chr1.4:82872563-82872582 | MS.gene065686:CDS | 25.0% |
| ! | TAGGAAATAGAACAAAAACT+AGG | - | chr1.4:82873269-82873288 | MS.gene065686:intron | 25.0% |
| ! | TATAAAATTGCCTTCAATAG+AGG | - | chr1.4:82872771-82872790 | MS.gene065686:intron | 25.0% |
| ! | TGTTAATTGTTCTAACTGTT+TGG | - | chr1.4:82872330-82872349 | MS.gene065686:intron | 25.0% |
| ! | TTTAAACAAACTATCGACAA+TGG | + | chr1.4:82872980-82872999 | None:intergenic | 25.0% |
| !! | AATTTTGCTTCAGAATTGTT+CGG | + | chr1.4:82871734-82871753 | None:intergenic | 25.0% |
| !! | ATGATTAGACTGTTGTTATT+TGG | - | chr1.4:82873024-82873043 | MS.gene065686:CDS | 25.0% |
| !! | TTAAGTTGTTTATCTAAGCA+TGG | + | chr1.4:82872367-82872386 | None:intergenic | 25.0% |
| !! | TTTTGTTGAATCATGAAACT+AGG | - | chr1.4:82873250-82873269 | MS.gene065686:intron | 25.0% |
| !!! | TAAACGTTTTAATCATCCAA+TGG | - | chr1.4:82872881-82872900 | MS.gene065686:intron | 25.0% |
| !!! | TGATTAGACTGTTGTTATTT+GGG | - | chr1.4:82873025-82873044 | MS.gene065686:CDS | 25.0% |
| ACTGAAATTTCCTCTATTGA+AGG | + | chr1.4:82872784-82872803 | None:intergenic | 30.0% | |
| ATTACAAACCTTCCAACAAA+AGG | - | chr1.4:82873118-82873137 | MS.gene065686:CDS | 30.0% | |
| ATTGTGTTGGATAGAATCTA+TGG | - | chr1.4:82873381-82873400 | MS.gene065686:CDS | 30.0% | |
| CAAACAGTGATTTCACATTA+AGG | + | chr1.4:82872460-82872479 | None:intergenic | 30.0% | |
| CCAATGGTAAACTATGTATA+AGG | - | chr1.4:82872897-82872916 | MS.gene065686:intron | 30.0% | |
| CCTTATACATAGTTTACCAT+TGG | + | chr1.4:82872900-82872919 | None:intergenic | 30.0% | |
| CTTCCAACAAAAGGAAAAAT+CGG | - | chr1.4:82873127-82873146 | MS.gene065686:CDS | 30.0% | |
| GAAGAACTGTTCAATTTAAG+AGG | + | chr1.4:82871771-82871790 | None:intergenic | 30.0% | |
| GTGAGTAACATTAATTGTGT+TGG | - | chr1.4:82873368-82873387 | MS.gene065686:CDS | 30.0% | |
| TCAAATGAACCAATTCAAAC+AGG | - | chr1.4:82872434-82872453 | MS.gene065686:intron | 30.0% | |
| TCATGATTCAACAAAAGCAA+TGG | + | chr1.4:82873246-82873265 | None:intergenic | 30.0% | |
| TGAACTAAAAACAAGTACCT+TGG | + | chr1.4:82872270-82872289 | None:intergenic | 30.0% | |
| TGTTGGAAGGTTTGTAATAT+GGG | + | chr1.4:82873116-82873135 | None:intergenic | 30.0% | |
| TTGTTGGAAGGTTTGTAATA+TGG | + | chr1.4:82873117-82873136 | None:intergenic | 30.0% | |
| ! | ATTTTGCTTCAGAATTGTTC+GGG | + | chr1.4:82871733-82871752 | None:intergenic | 30.0% |
| ! | TGACAATGTTGTTATTGTGT+AGG | - | chr1.4:82871992-82872011 | MS.gene065686:intron | 30.0% |
| !! | ATTAGACTGTTGTTATTTGG+GGG | - | chr1.4:82873027-82873046 | MS.gene065686:CDS | 30.0% |
| !! | GATTAGACTGTTGTTATTTG+GGG | - | chr1.4:82873026-82873045 | MS.gene065686:CDS | 30.0% |
| !! | TTTTAACTACATCAGATCGA+GGG | + | chr1.4:82872553-82872572 | None:intergenic | 30.0% |
| ACAATCCTTTCTCATTTCCT+TGG | - | chr1.4:82873468-82873487 | MS.gene065686:CDS | 35.0% | |
| ACATTAAGGCCTGTTTGAAT+TGG | + | chr1.4:82872446-82872465 | None:intergenic | 35.0% | |
| AGAAATGAAGGAACTGAAAG+AGG | + | chr1.4:82871796-82871815 | None:intergenic | 35.0% | |
| AGGTCAAATTTGCAAAACAC+AGG | + | chr1.4:82872840-82872859 | None:intergenic | 35.0% | |
| AGTTGGATTCTTAGTTGCAA+AGG | - | chr1.4:82872640-82872659 | MS.gene065686:CDS | 35.0% | |
| ATGCCAGAAAACAATACAGA+TGG | + | chr1.4:82872952-82872971 | None:intergenic | 35.0% | |
| ATTCTTTCCTTTACAGGCTT+CGG | - | chr1.4:82873440-82873459 | MS.gene065686:CDS | 35.0% | |
| CAATCCTTTCTCATTTCCTT+GGG | - | chr1.4:82873469-82873488 | MS.gene065686:CDS | 35.0% | |
| CTAAAAACAAGTACCTTGGT+AGG | + | chr1.4:82872266-82872285 | None:intergenic | 35.0% | |
| GAAATGAAGGAACTGAAAGA+GGG | + | chr1.4:82871795-82871814 | None:intergenic | 35.0% | |
| TTCAATTTAAGAGGGAGTGA+GGG | + | chr1.4:82871762-82871781 | None:intergenic | 35.0% | |
| TTGGTGCAGGTAAAACTTAT+TGG | - | chr1.4:82872740-82872759 | MS.gene065686:intron | 35.0% | |
| TTTAACTACATCAGATCGAG+GGG | + | chr1.4:82872552-82872571 | None:intergenic | 35.0% | |
| ! | ACTCCATCTGTATTGTTTTC+TGG | - | chr1.4:82872946-82872965 | MS.gene065686:CDS | 35.0% |
| ! | ATTAGGTAGCTTAGGGTTTT+GGG | - | chr1.4:82872055-82872074 | MS.gene065686:intron | 35.0% |
| ! | CAATGTTGTTATTGTGTAGG+TGG | - | chr1.4:82871995-82872014 | MS.gene065686:intron | 35.0% |
| ! | CGATTTTTCCTTTTGTTGGA+AGG | + | chr1.4:82873129-82873148 | None:intergenic | 35.0% |
| ! | CTGCATTCATTTCAGTGTTT+TGG | - | chr1.4:82872189-82872208 | MS.gene065686:intron | 35.0% |
| ! | GAATTTGCTTAGGAAGCTAA+AGG | - | chr1.4:82872307-82872326 | MS.gene065686:intron | 35.0% |
| ! | TCTCGCATTAGATGTCTTTT+TGG | - | chr1.4:82872721-82872740 | MS.gene065686:intron | 35.0% |
| ! | TTTTGCTTCAGAATTGTTCG+GGG | + | chr1.4:82871732-82871751 | None:intergenic | 35.0% |
| !! | ACTCACATTAGTTTGTTGCT+TGG | + | chr1.4:82873354-82873373 | None:intergenic | 35.0% |
| !! | ATTAGATGTCTTTTTGGTGC+AGG | - | chr1.4:82872727-82872746 | MS.gene065686:intron | 35.0% |
| !! | CTTTTAACTACATCAGATCG+AGG | + | chr1.4:82872554-82872573 | None:intergenic | 35.0% |
| !! | GGTATAGCATTGAACCTTTT+GGG | - | chr1.4:82872584-82872603 | MS.gene065686:CDS | 35.0% |
| !! | GTATAGCATTGAACCTTTTG+GGG | - | chr1.4:82872585-82872604 | MS.gene065686:CDS | 35.0% |
| !! | TGGTATAGCATTGAACCTTT+TGG | - | chr1.4:82872583-82872602 | MS.gene065686:CDS | 35.0% |
| !!! | ACACCGATTTTTCCTTTTGT+TGG | + | chr1.4:82873133-82873152 | None:intergenic | 35.0% |
| !!! | ATTTCAGTGTTTTGGTCCTT+TGG | - | chr1.4:82872197-82872216 | MS.gene065686:intron | 35.0% |
| AACTGCAAATGATCCTACCA+AGG | - | chr1.4:82872250-82872269 | MS.gene065686:intron | 40.0% | |
| AAGACATCTAATGCGAGAAC+AGG | + | chr1.4:82872719-82872738 | None:intergenic | 40.0% | |
| AGAAATGGAAGAGCTTCTGA+CGG | + | chr1.4:82873537-82873556 | None:intergenic | 40.0% | |
| ATGGAGTTGTTCTCCAGAAT+AGG | + | chr1.4:82872933-82872952 | None:intergenic | 40.0% | |
| CCATTGACGATGAGAAATGA+AGG | + | chr1.4:82871808-82871827 | None:intergenic | 40.0% | |
| CCTTCATTTCTCATCGTCAA+TGG | - | chr1.4:82871805-82871824 | MS.gene065686:intron | 40.0% | |
| GAGCGATTCCCTGATAATAT+GGG | + | chr1.4:82872685-82872704 | None:intergenic | 40.0% | |
| GATTCCCTGATAATATGGGT+TGG | + | chr1.4:82872681-82872700 | None:intergenic | 40.0% | |
| GTTCAATTTAAGAGGGAGTG+AGG | + | chr1.4:82871763-82871782 | None:intergenic | 40.0% | |
| TCAAGCGATTAGGTAGCTTA+GGG | - | chr1.4:82872048-82872067 | MS.gene065686:intron | 40.0% | |
| TCAATTTAAGAGGGAGTGAG+GGG | + | chr1.4:82871761-82871780 | None:intergenic | 40.0% | |
| TCTGCCAACCCATATTATCA+GGG | - | chr1.4:82872674-82872693 | MS.gene065686:intron | 40.0% | |
| TGCAACTAAGAATCCAACTG+TGG | + | chr1.4:82872639-82872658 | None:intergenic | 40.0% | |
| TTAACTACATCAGATCGAGG+GGG | + | chr1.4:82872551-82872570 | None:intergenic | 40.0% | |
| TTCAAGCGATTAGGTAGCTT+AGG | - | chr1.4:82872047-82872066 | MS.gene065686:intron | 40.0% | |
| ! | CACTTTTCCGGTAACAACAA+CGG | + | chr1.4:82872126-82872145 | None:intergenic | 40.0% |
| ! | GATTAGGTAGCTTAGGGTTT+TGG | - | chr1.4:82872054-82872073 | MS.gene065686:intron | 40.0% |
| ! | TTAGGTAGCTTAGGGTTTTG+GGG | - | chr1.4:82872056-82872075 | MS.gene065686:intron | 40.0% |
| ! | TTTTCCGATTCTTCGTTGGA+AGG | + | chr1.4:82871882-82871901 | None:intergenic | 40.0% |
| !! | AGGGCATCATTTTCCTATTC+TGG | - | chr1.4:82872917-82872936 | MS.gene065686:intron | 40.0% |
| !! | GAGCTTTTAGTTGTGGTTTC+AGG | - | chr1.4:82872523-82872542 | MS.gene065686:CDS | 40.0% |
| !! | GTTGGTTGAGCTTTTAGTTG+TGG | - | chr1.4:82872516-82872535 | MS.gene065686:CDS | 40.0% |
| !! | TCGTTTTCCGTTGTTGTTAC+CGG | - | chr1.4:82872116-82872135 | MS.gene065686:intron | 40.0% |
| AGAAGAAGCGGTTACTGTGA+AGG | + | chr1.4:82871838-82871857 | None:intergenic | 45.0% | |
| AGAGAGGCGAATATAGCCAA+AGG | + | chr1.4:82872216-82872235 | None:intergenic | 45.0% | |
| AGAGATTGGAGAAAACTGCG+AGG | - | chr1.4:82872021-82872040 | MS.gene065686:intron | 45.0% | |
| CACTCCTTCCAACGAAGAAT+CGG | - | chr1.4:82871875-82871894 | MS.gene065686:intron | 45.0% | |
| CTCTGCCAACCCATATTATC+AGG | - | chr1.4:82872673-82872692 | MS.gene065686:intron | 45.0% | |
| GAAATGGCTGAGATTGAGAG+TGG | + | chr1.4:82871696-82871715 | None:intergenic | 45.0% | |
| GAAGAAGCGGTTACTGTGAA+GGG | + | chr1.4:82871837-82871856 | None:intergenic | 45.0% | |
| GAAGCCCAAGGAAATGAGAA+AGG | + | chr1.4:82873476-82873495 | None:intergenic | 45.0% | |
| GCTGTAGCATAAAACGTTGC+CGG | + | chr1.4:82872155-82872174 | None:intergenic | 45.0% | |
| GGAAAAAGCGAAACTCGATC+AGG | - | chr1.4:82871896-82871915 | MS.gene065686:intron | 45.0% | |
| GGAGCGATTCCCTGATAATA+TGG | + | chr1.4:82872686-82872705 | None:intergenic | 45.0% | |
| GGATGGGATCTGCTATTCTT+GGG | - | chr1.4:82872606-82872625 | MS.gene065686:CDS | 45.0% | |
| TATTATCAGGGAATCGCTCC+TGG | - | chr1.4:82872686-82872705 | MS.gene065686:intron | 45.0% | |
| TGCAGAGGATTGAGAAGAAG+CGG | + | chr1.4:82871850-82871869 | None:intergenic | 45.0% | |
| TTACTTGAAGCCTACCACAG+TGG | + | chr1.4:82873409-82873428 | None:intergenic | 45.0% | |
| ! | ACGTTTTATGCTACAGCTGG+TGG | - | chr1.4:82872158-82872177 | MS.gene065686:intron | 45.0% |
| ! | GCAACGTTTTATGCTACAGC+TGG | - | chr1.4:82872155-82872174 | MS.gene065686:intron | 45.0% |
| ! | TGTTATTTGGGGGTGAAGTG+TGG | - | chr1.4:82873037-82873056 | MS.gene065686:CDS | 45.0% |
| !! | AGCATTGAACCTTTTGGGGA+TGG | - | chr1.4:82872589-82872608 | MS.gene065686:CDS | 45.0% |
| !! | CTGATAATATGGGTTGGCAG+AGG | + | chr1.4:82872675-82872694 | None:intergenic | 45.0% |
| !! | GCATTGAACCTTTTGGGGAT+GGG | - | chr1.4:82872590-82872609 | MS.gene065686:CDS | 45.0% |
| !! | TAGAATCTATGGTGCCACTG+TGG | - | chr1.4:82873392-82873411 | MS.gene065686:CDS | 45.0% |
| !!! | CGCTTTTTCCGATTCTTCGT+TGG | + | chr1.4:82871886-82871905 | None:intergenic | 45.0% |
| AATGGAAGAGCTTCTGACGG+CGG | + | chr1.4:82873534-82873553 | None:intergenic | 50.0% | |
| AGAATTGTTCGGGGAAGACG+AGG | + | chr1.4:82871723-82871742 | None:intergenic | 50.0% | |
| GAATTGTTCGGGGAAGACGA+GGG | + | chr1.4:82871722-82871741 | None:intergenic | 50.0% | |
| GCTATATTCGCCTCTCTGAG+AGG | - | chr1.4:82872219-82872238 | MS.gene065686:intron | 50.0% | |
| GGGATGGGATCTGCTATTCT+TGG | - | chr1.4:82872605-82872624 | MS.gene065686:CDS | 50.0% | |
| GTGTTTGCCGAAGCCTGTAA+AGG | + | chr1.4:82873450-82873469 | None:intergenic | 50.0% | |
| TACCGGAAAAGTGACATCGC+CGG | - | chr1.4:82872133-82872152 | MS.gene065686:intron | 50.0% | |
| TAGCAGATCCCATCCCCAAA+AGG | + | chr1.4:82872601-82872620 | None:intergenic | 50.0% | |
| TGTGTAGGTGGCGAAGAGAT+TGG | - | chr1.4:82872007-82872026 | MS.gene065686:intron | 50.0% | |
| TTCTACGAAGCCTCTCAGAG+AGG | + | chr1.4:82872232-82872251 | None:intergenic | 50.0% | |
| TTTGGGGGTGAAGTGTGGAT+TGG | - | chr1.4:82873042-82873061 | MS.gene065686:CDS | 50.0% | |
| ! | GCGAGGCATTTCAAGCGATT+AGG | - | chr1.4:82872038-82872057 | MS.gene065686:intron | 50.0% |
| !! | ATCTATGGTGCCACTGTGGT+AGG | - | chr1.4:82873396-82873415 | MS.gene065686:CDS | 50.0% |
| CCAGCGAGAAAAGAAGCCCA+AGG | + | chr1.4:82873488-82873507 | None:intergenic | 55.0% | |
| CTTGGGATGCAAGCCACAGT+TGG | - | chr1.4:82872623-82872642 | MS.gene065686:CDS | 55.0% | |
| GCGAGAACAGGACTTGAACC+AGG | + | chr1.4:82872707-82872726 | None:intergenic | 55.0% | |
| GGAAGGAGTGAAAGCTGCAG+AGG | + | chr1.4:82871865-82871884 | None:intergenic | 55.0% | |
| ! | CCTTGGGCTTCTTTTCTCGC+TGG | - | chr1.4:82873485-82873504 | MS.gene065686:CDS | 55.0% |
| !!! | TGCCGGCGATGTCACTTTTC+CGG | + | chr1.4:82872138-82872157 | None:intergenic | 55.0% |
| ACCGTGTTCCGGCAGGTTCA+CGG | - | chr1.4:82871665-82871684 | MS.gene065686:CDS | 60.0% | |
| GGGAAGACGAGGGACGGAAA+TGG | + | chr1.4:82871712-82871731 | None:intergenic | 60.0% | |
| TGTTCGGGGAAGACGAGGGA+CGG | + | chr1.4:82871718-82871737 | None:intergenic | 60.0% | |
| !! | GGGGGTGAAGTGTGGATTGG+TGG | - | chr1.4:82873045-82873064 | MS.gene065686:CDS | 60.0% |
| AACCTGCCGGAACACGGTGC+CGG | + | chr1.4:82871663-82871682 | None:intergenic | 65.0% | |
| CTAACGCCGGCACCGTGTTC+CGG | - | chr1.4:82871654-82871673 | MS.gene065686:CDS | 65.0% | |
| GCCGTGAACCTGCCGGAACA+CGG | + | chr1.4:82871669-82871688 | None:intergenic | 65.0% | |
| GTGTTCCGGCAGGTTCACGG+CGG | - | chr1.4:82871668-82871687 | MS.gene065686:CDS | 65.0% | |
| TGGCGCCGCCGTGAACCTGC+CGG | + | chr1.4:82871676-82871695 | None:intergenic | 75.0% | |
| ! | CGCCGGCACCGTGTTCCGGC+AGG | - | chr1.4:82871658-82871677 | MS.gene065686:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 82871642 | 82873569 | 82871642 | ID=MS.gene065686 |
| chr1.4 | mRNA | 82871642 | 82873569 | 82871642 | ID=MS.gene065686.t1;Parent=MS.gene065686 |
| chr1.4 | exon | 82873294 | 82873569 | 82873294 | ID=MS.gene065686.t1.exon1;Parent=MS.gene065686.t1 |
| chr1.4 | CDS | 82873294 | 82873569 | 82873294 | ID=cds.MS.gene065686.t1;Parent=MS.gene065686.t1 |
| chr1.4 | exon | 82872940 | 82873197 | 82872940 | ID=MS.gene065686.t1.exon2;Parent=MS.gene065686.t1 |
| chr1.4 | CDS | 82872940 | 82873197 | 82872940 | ID=cds.MS.gene065686.t1;Parent=MS.gene065686.t1 |
| chr1.4 | exon | 82872463 | 82872666 | 82872463 | ID=MS.gene065686.t1.exon3;Parent=MS.gene065686.t1 |
| chr1.4 | CDS | 82872463 | 82872666 | 82872463 | ID=cds.MS.gene065686.t1;Parent=MS.gene065686.t1 |
| chr1.4 | exon | 82871642 | 82871755 | 82871642 | ID=MS.gene065686.t1.exon4;Parent=MS.gene065686.t1 |
| chr1.4 | CDS | 82871642 | 82871755 | 82871642 | ID=cds.MS.gene065686.t1;Parent=MS.gene065686.t1 |
| Gene Sequence |
| Protein sequence |
