Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065974.t1 | XP_003629865.2 | 89 | 474 | 52 | 0 | 1 | 474 | 31 | 504 | 1.20E-233 | 818.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065974.t1 | F4I340 | 47.4 | 384 | 192 | 4 | 82 | 460 | 139 | 517 | 1.1e-94 | 348.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065974.t1 | G7L7B8 | 89.0 | 474 | 52 | 0 | 1 | 474 | 31 | 504 | 8.6e-234 | 818.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055926 | MS.gene065974 | 0.80539 | 1.37E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene065974 | 0.803006 | 4.28E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065974.t1 | MTR_8g087730 | 95.671 | 462 | 20 | 0 | 13 | 474 | 43 | 504 | 0.0 | 849 |
| MS.gene065974.t1 | MTR_2g017670 | 53.509 | 456 | 204 | 1 | 26 | 473 | 52 | 507 | 5.37e-165 | 476 |
| MS.gene065974.t1 | MTR_7g080030 | 34.749 | 259 | 155 | 3 | 198 | 456 | 64 | 308 | 2.75e-43 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene065974.t1 | AT1G29760 | 42.977 | 477 | 238 | 9 | 9 | 460 | 50 | 517 | 2.25e-127 | 380 |
| MS.gene065974.t1 | AT2G34380 | 42.384 | 453 | 227 | 10 | 28 | 469 | 69 | 498 | 1.47e-107 | 329 |
| MS.gene065974.t1 | AT5G16460 | 33.708 | 267 | 154 | 2 | 194 | 460 | 83 | 326 | 1.74e-39 | 146 |
Find 104 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGCAATCATGTTTCAAATT+AGG | 0.110779 | 4.3:+13322538 | MS.gene065974:CDS |
| CACTAAACTTGGTGTCTTTC+AGG | 0.131342 | 4.3:+13323091 | MS.gene065974:CDS |
| TCAATGAACATAAGTCATTT+TGG | 0.180695 | 4.3:+13322730 | MS.gene065974:CDS |
| CACAAAATCCTCTTGATTAA+AGG | 0.197943 | 4.3:-13324333 | None:intergenic |
| TCGATAGATGGGTGAATAAA+AGG | 0.212990 | 4.3:+13323003 | MS.gene065974:CDS |
| GGAAGATGAGTTTATTTATA+TGG | 0.230990 | 4.3:+13324361 | MS.gene065974:CDS |
| AGCAATCATGTTTCAAATTA+GGG | 0.243989 | 4.3:+13322539 | MS.gene065974:CDS |
| TCATCTTGGCATCCAGAGTC+TGG | 0.248573 | 4.3:-13324182 | None:intergenic |
| CCACTCCTTTGCCTGGTTCT+AGG | 0.251263 | 4.3:-13324450 | None:intergenic |
| AAGATTGTTCCTCTTCTTAC+TGG | 0.251427 | 4.3:+13324144 | MS.gene065974:CDS |
| TTCTTCGACTTTCCCTTTAT+CGG | 0.268137 | 4.3:-13322385 | None:intergenic |
| TCTTAAGGAAAGTTGTAATT+AGG | 0.274760 | 4.3:-13324125 | None:intergenic |
| TTTATCACCGTTGGTCGAAT+TGG | 0.282661 | 4.3:-13322316 | None:intergenic |
| GTATAAAGCATCAATAAAAT+TGG | 0.305732 | 4.3:-13322585 | None:intergenic |
| TTCATTGGTCCTTCAGCATT+GGG | 0.324814 | 4.3:+13322702 | MS.gene065974:CDS |
| GAATCTCCTCCCTCCTCTTC+CGG | 0.331359 | 4.3:+13322180 | MS.gene065974:CDS |
| TCACTTTCCTTCAAAATTGA+AGG | 0.337279 | 4.3:-13322354 | None:intergenic |
| TCTTCTAATGGTAAAACAAT+TGG | 0.337649 | 4.3:+13324054 | MS.gene065974:CDS |
| ACACCAGAACACGATATTAT+AGG | 0.341446 | 4.3:-13322939 | None:intergenic |
| AGGTGCACTTTCTGTTTAGA+AGG | 0.342581 | 4.3:-13323032 | None:intergenic |
| GAAGAGGAGGGAGGAGATTC+CGG | 0.348033 | 4.3:-13322177 | None:intergenic |
| ATTTATATGGATTGCAATGA+TGG | 0.349892 | 4.3:+13324374 | MS.gene065974:CDS |
| AATTCGCTTGATTATGCAAC+TGG | 0.353195 | 4.3:+13322504 | MS.gene065974:CDS |
| CGAATTGGCGCTACTGGAAA+TGG | 0.353218 | 4.3:-13322301 | None:intergenic |
| GTTCCTATAATATCGTGTTC+TGG | 0.368459 | 4.3:+13322936 | MS.gene065974:CDS |
| GTAGACTTCTTATCTTCTAA+TGG | 0.376482 | 4.3:+13324042 | MS.gene065974:CDS |
| GCGACATTGGTGTCGATAGA+TGG | 0.378599 | 4.3:+13322991 | MS.gene065974:CDS |
| TTCTATGAGGGTATTGGATA+GGG | 0.391446 | 4.3:+13322659 | MS.gene065974:CDS |
| GTTGGTCGAATTGGCGCTAC+TGG | 0.402056 | 4.3:-13322307 | None:intergenic |
| TTTCTATGAGGGTATTGGAT+AGG | 0.407949 | 4.3:+13322658 | MS.gene065974:CDS |
| AACACTTGTTTCATCTGAAA+CGG | 0.421853 | 4.3:-13322876 | None:intergenic |
| TCTTCGACTTTCCCTTTATC+GGG | 0.422458 | 4.3:-13322384 | None:intergenic |
| TGTTGTGTTTGTGAGTTCAT+TGG | 0.428316 | 4.3:+13322687 | MS.gene065974:CDS |
| TAAGAAGAGGAACAATCTTA+AGG | 0.431936 | 4.3:-13324140 | None:intergenic |
| GTTCATTGGTCCTTCAGCAT+TGG | 0.441452 | 4.3:+13322701 | MS.gene065974:CDS |
| TCATTGTTAGTGCCTGAGTC+AGG | 0.452468 | 4.3:+13323062 | MS.gene065974:CDS |
| TTCAACAAAATCACTCATCT+TGG | 0.454423 | 4.3:-13324196 | None:intergenic |
| TAGGTGGCGGTGACCGGAAG+AGG | 0.455882 | 4.3:-13322193 | None:intergenic |
| GGTGATTCAGCTGACTCGTT+GGG | 0.456888 | 4.3:+13322459 | MS.gene065974:CDS |
| CGGTGATTCAGCTGACTCGT+TGG | 0.457575 | 4.3:+13322458 | MS.gene065974:CDS |
| TGTGTCTAGGTGGCGGTGAC+CGG | 0.458781 | 4.3:-13322199 | None:intergenic |
| AGCAGAACCACTCCTTTGCC+TGG | 0.463811 | 4.3:-13324457 | None:intergenic |
| GATATTCTGCTCGCTGCTCA+AGG | 0.465502 | 4.3:-13324251 | None:intergenic |
| ATTATAGGAACAAACGCAAC+AGG | 0.465562 | 4.3:-13322924 | None:intergenic |
| TTTGTGCCTGAAGATTGTTT+TGG | 0.470708 | 4.3:-13324494 | None:intergenic |
| CGATAGATGGGTGAATAAAA+GGG | 0.475012 | 4.3:+13323004 | MS.gene065974:CDS |
| CAGAACTTCCTTTAATCAAG+AGG | 0.479270 | 4.3:+13324325 | MS.gene065974:CDS |
| GTTGCATTTCGATGTGGGTG+GGG | 0.492108 | 4.3:+13322756 | MS.gene065974:CDS |
| TTCAATTCTCCGCCGATCAC+CGG | 0.492574 | 4.3:+13322260 | MS.gene065974:CDS |
| CCATTTGGAACAATAAGAAA+AGG | 0.494510 | 4.3:+13322627 | MS.gene065974:CDS |
| TGTTGCATTTCGATGTGGGT+GGG | 0.495789 | 4.3:+13322755 | MS.gene065974:CDS |
| TTGGTCCTTCAGCATTGGGA+TGG | 0.498257 | 4.3:+13322706 | MS.gene065974:CDS |
| GTGGCGGTGACCGGAAGAGG+AGG | 0.500269 | 4.3:-13322190 | None:intergenic |
| CCAACGGTGATAAAATTAAG+AGG | 0.500374 | 4.3:+13322325 | MS.gene065974:CDS |
| ATAGATGAATCATATATTTG+AGG | 0.505711 | 4.3:-13324291 | None:intergenic |
| AATTGAACGACGGCGGATAG+TGG | 0.506604 | 4.3:-13322244 | None:intergenic |
| ATAATATCGTGTTCTGGTGT+TGG | 0.507801 | 4.3:+13322942 | MS.gene065974:CDS |
| AGTGGCGGAGGAAGGTGAAG+AGG | 0.513191 | 4.3:-13322226 | None:intergenic |
| CATCTTGGCATCCAGAGTCT+GGG | 0.513393 | 4.3:-13324181 | None:intergenic |
| GTGAAGAGGGTTGTGTGTCT+AGG | 0.513789 | 4.3:-13322212 | None:intergenic |
| AAGGGAAAGTCGAAGAAGAG+AGG | 0.514920 | 4.3:+13322391 | MS.gene065974:CDS |
| TATATCAGAGACCCAGACTC+TGG | 0.527807 | 4.3:+13324170 | MS.gene065974:CDS |
| AGTCGAAGAAGAGAGGAATG+AGG | 0.528728 | 4.3:+13322398 | MS.gene065974:CDS |
| ATGTTGCATTTCGATGTGGG+TGG | 0.534985 | 4.3:+13322754 | MS.gene065974:CDS |
| GTGGCGGAGGAAGGTGAAGA+GGG | 0.537712 | 4.3:-13322225 | None:intergenic |
| GCAGAATATCTACCTGGTGC+TGG | 0.540258 | 4.3:+13324264 | MS.gene065974:CDS |
| TCAGGATACAACACTAAACT+TGG | 0.546190 | 4.3:+13323080 | MS.gene065974:CDS |
| AAGTACCCAAAACAATCTTC+AGG | 0.546287 | 4.3:+13324488 | MS.gene065974:CDS |
| GGAATGTTGCATTTCGATGT+GGG | 0.554661 | 4.3:+13322751 | MS.gene065974:CDS |
| CGACATTGGTGTCGATAGAT+GGG | 0.559023 | 4.3:+13322992 | MS.gene065974:CDS |
| CGGCGGATAGTGGCGGAGGA+AGG | 0.560951 | 4.3:-13322234 | None:intergenic |
| CATTTGGAACAATAAGAAAA+GGG | 0.566352 | 4.3:+13322628 | MS.gene065974:CDS |
| CAGCGAGCAGAATATCTACC+TGG | 0.573855 | 4.3:+13324258 | MS.gene065974:CDS |
| CTTCTGAATCTTAACATGCA+AGG | 0.575343 | 4.3:-13324090 | None:intergenic |
| GGTGCACTTTCTGTTTAGAA+GGG | 0.576615 | 4.3:-13323031 | None:intergenic |
| CTGGTTCTAGGAATAATCAT+AGG | 0.576936 | 4.3:-13324438 | None:intergenic |
| CTATGATTATTCCTAGAACC+AGG | 0.579075 | 4.3:+13324439 | MS.gene065974:CDS |
| TGGAATGTTGCATTTCGATG+TGG | 0.579248 | 4.3:+13322750 | MS.gene065974:CDS |
| TGCAATGATGGCATTCGTGA+TGG | 0.580804 | 4.3:+13324386 | MS.gene065974:CDS |
| AAAGTTGTAATTAGGCGGAT+AGG | 0.581492 | 4.3:-13324117 | None:intergenic |
| GATATATAACCAGTAAGAAG+AGG | 0.582317 | 4.3:-13324153 | None:intergenic |
| TTGAACCATCCCAATGCTGA+AGG | 0.583018 | 4.3:-13322711 | None:intergenic |
| TTAGTGTTGTATCCTGACTC+AGG | 0.585814 | 4.3:-13323074 | None:intergenic |
| GCTACACATGATGAACCATT+CGG | 0.586062 | 4.3:+13322438 | MS.gene065974:CDS |
| TTTGATGAGAGTGGCGACAT+TGG | 0.586179 | 4.3:+13322978 | MS.gene065974:CDS |
| CGGTGACCGGAAGAGGAGGG+AGG | 0.595936 | 4.3:-13322186 | None:intergenic |
| TAAGGAAAGTTGTAATTAGG+CGG | 0.599902 | 4.3:-13324122 | None:intergenic |
| TGGCGGTGACCGGAAGAGGA+GGG | 0.603205 | 4.3:-13322189 | None:intergenic |
| ACGACGGCGGATAGTGGCGG+AGG | 0.603258 | 4.3:-13322238 | None:intergenic |
| ATATTCTGCTCGCTGCTCAA+GGG | 0.612718 | 4.3:-13324250 | None:intergenic |
| AAGAGGGTTGTGTGTCTAGG+TGG | 0.623833 | 4.3:-13322209 | None:intergenic |
| ATATCGTGTTCTGGTGTTGG+TGG | 0.636017 | 4.3:+13322945 | MS.gene065974:CDS |
| ATTTGAGGAATACCAGCACC+AGG | 0.640932 | 4.3:-13324276 | None:intergenic |
| AGGGTTGTGTGTCTAGGTGG+CGG | 0.641385 | 4.3:-13322206 | None:intergenic |
| TGAACGACGGCGGATAGTGG+CGG | 0.644384 | 4.3:-13322241 | None:intergenic |
| AGTAGCGCCAATTCGACCAA+CGG | 0.656114 | 4.3:+13322309 | MS.gene065974:CDS |
| CCTAGAACCAGGCAAAGGAG+TGG | 0.668769 | 4.3:+13324450 | MS.gene065974:CDS |
| GCATAATCAAGCGAATTCGA+CGG | 0.674424 | 4.3:-13322498 | None:intergenic |
| GAGTCAGCTGAATCACCGAA+TGG | 0.681183 | 4.3:-13322453 | None:intergenic |
| GGCGGAGAATTGAACGACGG+CGG | 0.685021 | 4.3:-13322251 | None:intergenic |
| TTATTCCTAGAACCAGGCAA+AGG | 0.686921 | 4.3:+13324445 | MS.gene065974:CDS |
| GGAGGGAGGAGATTCCGGCA+TGG | 0.712899 | 4.3:-13322172 | None:intergenic |
| ATCGGCGGAGAATTGAACGA+CGG | 0.719232 | 4.3:-13322254 | None:intergenic |
| GCACTAACAATGAAACAGTG+AGG | 0.758549 | 4.3:-13323052 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGAAGATATTAATTCTATA+TGG | + | chr4.3:13323310-13323329 | MS.gene065974:intron | 15.0% |
| !!! | TGAGTTAATATTTTGAATAA+CGG | - | chr4.3:13323614-13323633 | None:intergenic | 15.0% |
| !! | ACACAATATTAATATAACAC+TGG | - | chr4.3:13323387-13323406 | None:intergenic | 20.0% |
| !! | AGTAAAACATCATAATAACA+AGG | - | chr4.3:13323187-13323206 | None:intergenic | 20.0% |
| !! | ATAGATGAATCATATATTTG+AGG | - | chr4.3:13324294-13324313 | None:intergenic | 20.0% |
| !! | CACAATATTAATATAACACT+GGG | - | chr4.3:13323386-13323405 | None:intergenic | 20.0% |
| !!! | GTATAAAGCATCAATAAAAT+TGG | - | chr4.3:13322588-13322607 | None:intergenic | 20.0% |
| ! | AGCAATCATGTTTCAAATTA+GGG | + | chr4.3:13322539-13322558 | MS.gene065974:CDS | 25.0% |
| ! | AGTTAGGTTTATTAAGCAAA+GGG | + | chr4.3:13323842-13323861 | MS.gene065974:intron | 25.0% |
| ! | CTAAAATGAATCTTATAGCT+AGG | - | chr4.3:13323124-13323143 | None:intergenic | 25.0% |
| ! | GGAAGATGAGTTTATTTATA+TGG | + | chr4.3:13324361-13324380 | MS.gene065974:CDS | 25.0% |
| ! | TCACTTGAAAATAATTCAAC+TGG | + | chr4.3:13323631-13323650 | MS.gene065974:intron | 25.0% |
| ! | TCTTAAGGAAAGTTGTAATT+AGG | - | chr4.3:13324128-13324147 | None:intergenic | 25.0% |
| ! | TCTTCTAATGGTAAAACAAT+TGG | + | chr4.3:13324054-13324073 | MS.gene065974:CDS | 25.0% |
| !! | ACAAATTAGTTTCCTTTGAA+AGG | + | chr4.3:13323445-13323464 | MS.gene065974:intron | 25.0% |
| !! | ATTTATATGGATTGCAATGA+TGG | + | chr4.3:13324374-13324393 | MS.gene065974:CDS | 25.0% |
| !! | CATTTGGAACAATAAGAAAA+GGG | + | chr4.3:13322628-13322647 | MS.gene065974:CDS | 25.0% |
| !! | CTTTTCTTATTGTTCCAAAT+GGG | - | chr4.3:13322629-13322648 | None:intergenic | 25.0% |
| !! | GTTTCTGATAATTCATTTTC+CGG | - | chr4.3:13322282-13322301 | None:intergenic | 25.0% |
| !! | TCAATGAACATAAGTCATTT+TGG | + | chr4.3:13322730-13322749 | MS.gene065974:CDS | 25.0% |
| !! | TGTGGATTGTTAATTAATCA+TGG | + | chr4.3:13323878-13323897 | MS.gene065974:intron | 25.0% |
| !!! | GACTTGTTTTTTATAGATCA+GGG | + | chr4.3:13324020-13324039 | MS.gene065974:intron | 25.0% |
| !!! | GATGCTTTAAAATAACAGTT+AGG | + | chr4.3:13323826-13323845 | MS.gene065974:intron | 25.0% |
| !!! | TGACTTGTTTTTTATAGATC+AGG | + | chr4.3:13324019-13324038 | MS.gene065974:intron | 25.0% |
| !!! | TTGTATTTTGTTTGCACTTT+TGG | + | chr4.3:13322803-13322822 | MS.gene065974:CDS | 25.0% |
| AACACTTGTTTCATCTGAAA+CGG | - | chr4.3:13322879-13322898 | None:intergenic | 30.0% | |
| ATAAAACCATGTCAAGCAAA+GGG | - | chr4.3:13323156-13323175 | None:intergenic | 30.0% | |
| ATGAATCTTATAGCTAGGTA+AGG | - | chr4.3:13323119-13323138 | None:intergenic | 30.0% | |
| ATTCTATATGGCAACTTCAA+AGG | + | chr4.3:13323322-13323341 | MS.gene065974:intron | 30.0% | |
| CAAGGAAATACTTCAGTTAA+AGG | - | chr4.3:13323759-13323778 | None:intergenic | 30.0% | |
| CACAAAATCCTCTTGATTAA+AGG | - | chr4.3:13324336-13324355 | None:intergenic | 30.0% | |
| CAGTTAGGTTTATTAAGCAA+AGG | + | chr4.3:13323841-13323860 | MS.gene065974:intron | 30.0% | |
| GAGCAATCATGTTTCAAATT+AGG | + | chr4.3:13322538-13322557 | MS.gene065974:CDS | 30.0% | |
| GATATATAACCAGTAAGAAG+AGG | - | chr4.3:13324156-13324175 | None:intergenic | 30.0% | |
| GTAGACTTCTTATCTTCTAA+TGG | + | chr4.3:13324042-13324061 | MS.gene065974:CDS | 30.0% | |
| GTTAGGTTTATTAAGCAAAG+GGG | + | chr4.3:13323843-13323862 | MS.gene065974:intron | 30.0% | |
| TAAGAAGAGGAACAATCTTA+AGG | - | chr4.3:13324143-13324162 | None:intergenic | 30.0% | |
| TAAGGAAAGTTGTAATTAGG+CGG | - | chr4.3:13324125-13324144 | None:intergenic | 30.0% | |
| TATAAAACCATGTCAAGCAA+AGG | - | chr4.3:13323157-13323176 | None:intergenic | 30.0% | |
| TCACTTTCCTTCAAAATTGA+AGG | - | chr4.3:13322357-13322376 | None:intergenic | 30.0% | |
| TGGTTTCTTTGAGTGTATAT+AGG | + | chr4.3:13323898-13323917 | MS.gene065974:intron | 30.0% | |
| TTCAACAAAATCACTCATCT+TGG | - | chr4.3:13324199-13324218 | None:intergenic | 30.0% | |
| TTGAAGCTTCAACAAAATCA+CGG | + | chr4.3:13323563-13323582 | MS.gene065974:intron | 30.0% | |
| TTGCAGTTCATAATTTCTTG+TGG | + | chr4.3:13323976-13323995 | MS.gene065974:intron | 30.0% | |
| ! | AAATTGTCATTTCCTGCTTA+AGG | + | chr4.3:13323933-13323952 | MS.gene065974:intron | 30.0% |
| ! | AAGATGAGTGATTTTGTTGA+AGG | + | chr4.3:13324198-13324217 | MS.gene065974:CDS | 30.0% |
| ! | AATTAGTTTCCTTTGAAAGG+AGG | + | chr4.3:13323448-13323467 | MS.gene065974:intron | 30.0% |
| ! | AGATGAGTGATTTTGTTGAA+GGG | + | chr4.3:13324199-13324218 | MS.gene065974:CDS | 30.0% |
| ! | ATAATTCATTTTCCGGTGAT+CGG | - | chr4.3:13322275-13322294 | None:intergenic | 30.0% |
| ! | CCATTTGGAACAATAAGAAA+AGG | + | chr4.3:13322627-13322646 | MS.gene065974:CDS | 30.0% |
| ! | CCTTTTCTTATTGTTCCAAA+TGG | - | chr4.3:13322630-13322649 | None:intergenic | 30.0% |
| ! | CTTTAATCAAGAGGATTTTG+TGG | + | chr4.3:13324334-13324353 | MS.gene065974:CDS | 30.0% |
| ! | GCAAAATCCTTCAATTTTGA+AGG | + | chr4.3:13322347-13322366 | MS.gene065974:CDS | 30.0% |
| ! | TTAAAGCATCAACACCATAA+TGG | - | chr4.3:13323816-13323835 | None:intergenic | 30.0% |
| ! | TTTTTGTTCTAGTGTGTTGT+TGG | + | chr4.3:13324415-13324434 | MS.gene065974:CDS | 30.0% |
| !! | TGCTTTATTTCCTACCATTA+TGG | + | chr4.3:13323799-13323818 | MS.gene065974:intron | 30.0% |
| !! | TTTCAGCACTTTTGTTTAGT+GGG | + | chr4.3:13322826-13322845 | MS.gene065974:CDS | 30.0% |
| !!! | ACTTTTGTTTAGTGGGTTTT+TGG | + | chr4.3:13322833-13322852 | MS.gene065974:CDS | 30.0% |
| !!! | AGTTTTTTCTATGAGGGTAT+TGG | + | chr4.3:13322653-13322672 | MS.gene065974:CDS | 30.0% |
| !!! | ATGTTTTTTGTAGACCCATT+TGG | + | chr4.3:13322612-13322631 | MS.gene065974:CDS | 30.0% |
| !!! | GTTACTTTTAAGCATGAAGT+GGG | - | chr4.3:13324231-13324250 | None:intergenic | 30.0% |
| AAAGTTGTAATTAGGCGGAT+AGG | - | chr4.3:13324120-13324139 | None:intergenic | 35.0% | |
| AAGATTGTTCCTCTTCTTAC+TGG | + | chr4.3:13324144-13324163 | MS.gene065974:CDS | 35.0% | |
| AAGTACCCAAAACAATCTTC+AGG | + | chr4.3:13324488-13324507 | MS.gene065974:CDS | 35.0% | |
| AATTCGCTTGATTATGCAAC+TGG | + | chr4.3:13322504-13322523 | MS.gene065974:CDS | 35.0% | |
| ACACCAGAACACGATATTAT+AGG | - | chr4.3:13322942-13322961 | None:intergenic | 35.0% | |
| ATAATATCGTGTTCTGGTGT+TGG | + | chr4.3:13322942-13322961 | MS.gene065974:CDS | 35.0% | |
| ATTATAGGAACAAACGCAAC+AGG | - | chr4.3:13322927-13322946 | None:intergenic | 35.0% | |
| CAGAACTTCCTTTAATCAAG+AGG | + | chr4.3:13324325-13324344 | MS.gene065974:CDS | 35.0% | |
| CAGCATGCATCATTGAAAAA+GGG | - | chr4.3:13323678-13323697 | None:intergenic | 35.0% | |
| CCAACGGTGATAAAATTAAG+AGG | + | chr4.3:13322325-13322344 | MS.gene065974:CDS | 35.0% | |
| CGATAGATGGGTGAATAAAA+GGG | + | chr4.3:13323004-13323023 | MS.gene065974:CDS | 35.0% | |
| CTATGATTATTCCTAGAACC+AGG | + | chr4.3:13324439-13324458 | MS.gene065974:CDS | 35.0% | |
| CTCTTTAGTATGAATGAGGA+AGG | + | chr4.3:13323220-13323239 | MS.gene065974:intron | 35.0% | |
| CTGGATAATAGACCTATTCT+CGG | + | chr4.3:13323650-13323669 | MS.gene065974:intron | 35.0% | |
| CTTCTGAATCTTAACATGCA+AGG | - | chr4.3:13324093-13324112 | None:intergenic | 35.0% | |
| GTTCCTATAATATCGTGTTC+TGG | + | chr4.3:13322936-13322955 | MS.gene065974:CDS | 35.0% | |
| TACACAGAAATGACATGTCA+AGG | - | chr4.3:13323777-13323796 | None:intergenic | 35.0% | |
| TCAGCATGCATCATTGAAAA+AGG | - | chr4.3:13323679-13323698 | None:intergenic | 35.0% | |
| TCAGGATACAACACTAAACT+TGG | + | chr4.3:13323080-13323099 | MS.gene065974:CDS | 35.0% | |
| TCGATAGATGGGTGAATAAA+AGG | + | chr4.3:13323003-13323022 | MS.gene065974:CDS | 35.0% | |
| TGCTCTCTTTAGTATGAATG+AGG | + | chr4.3:13323216-13323235 | MS.gene065974:intron | 35.0% | |
| TGTTGTGTTTGTGAGTTCAT+TGG | + | chr4.3:13322687-13322706 | MS.gene065974:CDS | 35.0% | |
| TTCTTCGACTTTCCCTTTAT+CGG | - | chr4.3:13322388-13322407 | None:intergenic | 35.0% | |
| ! | AGTGAGAATTTTCCCGATAA+AGG | + | chr4.3:13322372-13322391 | MS.gene065974:CDS | 35.0% |
| ! | CCTCTTAATTTTATCACCGT+TGG | - | chr4.3:13322328-13322347 | None:intergenic | 35.0% |
| ! | GATATTGCAGAGACTTTTGA+TGG | + | chr4.3:13323250-13323269 | MS.gene065974:intron | 35.0% |
| ! | GATGAGTGATTTTGTTGAAG+GGG | + | chr4.3:13324200-13324219 | MS.gene065974:CDS | 35.0% |
| ! | GTGAGAATTTTCCCGATAAA+GGG | + | chr4.3:13322373-13322392 | MS.gene065974:CDS | 35.0% |
| ! | TCAAGAGGATTTTGTGGTAT+TGG | + | chr4.3:13324340-13324359 | MS.gene065974:CDS | 35.0% |
| ! | TGTAGCTTTTGCCAAAATCA+CGG | - | chr4.3:13323541-13323560 | None:intergenic | 35.0% |
| ! | TTGTGCCTGAAGATTGTTTT+GGG | - | chr4.3:13324496-13324515 | None:intergenic | 35.0% |
| ! | TTTGTGCCTGAAGATTGTTT+TGG | - | chr4.3:13324497-13324516 | None:intergenic | 35.0% |
| !! | AATTTGGTGCTAGTTACAAC+TGG | + | chr4.3:13323355-13323374 | MS.gene065974:intron | 35.0% |
| !! | CTGAATTGCTTTTGATGTGA+AGG | + | chr4.3:13323695-13323714 | MS.gene065974:intron | 35.0% |
| !! | CTGGTTCTAGGAATAATCAT+AGG | - | chr4.3:13324441-13324460 | None:intergenic | 35.0% |
| !! | GTTTCAGCACTTTTGTTTAG+TGG | + | chr4.3:13322825-13322844 | MS.gene065974:CDS | 35.0% |
| !! | TTCTATGAGGGTATTGGATA+GGG | + | chr4.3:13322659-13322678 | MS.gene065974:CDS | 35.0% |
| !! | TTTCTATGAGGGTATTGGAT+AGG | + | chr4.3:13322658-13322677 | MS.gene065974:CDS | 35.0% |
| !!! | AAGGGAGAGTTTTTTCTATG+AGG | + | chr4.3:13322646-13322665 | MS.gene065974:CDS | 35.0% |
| !!! | AGGGAGAGTTTTTTCTATGA+GGG | + | chr4.3:13322647-13322666 | MS.gene065974:CDS | 35.0% |
| !!! | GGTTACTTTTAAGCATGAAG+TGG | - | chr4.3:13324232-13324251 | None:intergenic | 35.0% |
| !!! | TTTAGTGGGTTTTTGGTGAA+GGG | + | chr4.3:13322840-13322859 | MS.gene065974:CDS | 35.0% |
| AAAGAACCCTTTGCTTGACA+TGG | + | chr4.3:13323147-13323166 | MS.gene065974:intron | 40.0% | |
| AACATGCACTCAAATGACTG+AGG | - | chr4.3:13323484-13323503 | None:intergenic | 40.0% | |
| AAGGGGATCAAATGTACTTG+TGG | + | chr4.3:13323860-13323879 | MS.gene065974:intron | 40.0% | |
| ACATGCACTCAAATGACTGA+GGG | - | chr4.3:13323483-13323502 | None:intergenic | 40.0% | |
| AGCATCAACACCATAATGGT+AGG | - | chr4.3:13323812-13323831 | None:intergenic | 40.0% | |
| AGGTGCACTTTCTGTTTAGA+AGG | - | chr4.3:13323035-13323054 | None:intergenic | 40.0% | |
| ATGCTTTGACCTCCTTTCAA+AGG | - | chr4.3:13323460-13323479 | None:intergenic | 40.0% | |
| CAAAGGTTTGAGCGGTAATT+TGG | + | chr4.3:13323339-13323358 | MS.gene065974:intron | 40.0% | |
| CAGTCATTTGAGTGCATGTT+TGG | + | chr4.3:13323484-13323503 | MS.gene065974:intron | 40.0% | |
| CATTTCCTGCTTAAGGAACT+TGG | + | chr4.3:13323940-13323959 | MS.gene065974:intron | 40.0% | |
| GCACTAACAATGAAACAGTG+AGG | - | chr4.3:13323055-13323074 | None:intergenic | 40.0% | |
| GCATAATCAAGCGAATTCGA+CGG | - | chr4.3:13322501-13322520 | None:intergenic | 40.0% | |
| GCTACACATGATGAACCATT+CGG | + | chr4.3:13322438-13322457 | MS.gene065974:CDS | 40.0% | |
| GGAATGTTGCATTTCGATGT+GGG | + | chr4.3:13322751-13322770 | MS.gene065974:CDS | 40.0% | |
| GGTGCACTTTCTGTTTAGAA+GGG | - | chr4.3:13323034-13323053 | None:intergenic | 40.0% | |
| GTAATCCAAGTTCCTTAAGC+AGG | - | chr4.3:13323948-13323967 | None:intergenic | 40.0% | |
| TCTTCGACTTTCCCTTTATC+GGG | - | chr4.3:13322387-13322406 | None:intergenic | 40.0% | |
| TGAAAAAGGGAACCGAGAAT+AGG | - | chr4.3:13323665-13323684 | None:intergenic | 40.0% | |
| TGGAATGTTGCATTTCGATG+TGG | + | chr4.3:13322750-13322769 | MS.gene065974:CDS | 40.0% | |
| TTAGTGTTGTATCCTGACTC+AGG | - | chr4.3:13323077-13323096 | None:intergenic | 40.0% | |
| TTATTCCTAGAACCAGGCAA+AGG | + | chr4.3:13324445-13324464 | MS.gene065974:CDS | 40.0% | |
| TTCATTGGTCCTTCAGCATT+GGG | + | chr4.3:13322702-13322721 | MS.gene065974:CDS | 40.0% | |
| TTTATCACCGTTGGTCGAAT+TGG | - | chr4.3:13322319-13322338 | None:intergenic | 40.0% | |
| ! | ACCTTTTGTCACCGTGATTT+TGG | + | chr4.3:13323527-13323546 | MS.gene065974:intron | 40.0% |
| ! | TGAGTGCATGTTTGGATTAG+TGG | + | chr4.3:13323492-13323511 | MS.gene065974:intron | 40.0% |
| ! | TTTTGATGTGAAGGCTGTGT+TGG | + | chr4.3:13323704-13323723 | MS.gene065974:intron | 40.0% |
| !! | CACTAAACTTGGTGTCTTTC+AGG | + | chr4.3:13323091-13323110 | MS.gene065974:CDS | 40.0% |
| !! | GATCATCGTTTTGATGAGAG+TGG | + | chr4.3:13322969-13322988 | MS.gene065974:CDS | 40.0% |
| !!! | GTTTAGTGGGTTTTTGGTGA+AGG | + | chr4.3:13322839-13322858 | MS.gene065974:CDS | 40.0% |
| AAGGGAAAGTCGAAGAAGAG+AGG | + | chr4.3:13322391-13322410 | MS.gene065974:CDS | 45.0% | |
| AGTCGAAGAAGAGAGGAATG+AGG | + | chr4.3:13322398-13322417 | MS.gene065974:CDS | 45.0% | |
| ATATTCTGCTCGCTGCTCAA+GGG | - | chr4.3:13324253-13324272 | None:intergenic | 45.0% | |
| ATGTTGCATTTCGATGTGGG+TGG | + | chr4.3:13322754-13322773 | MS.gene065974:CDS | 45.0% | |
| ATTTGAGGAATACCAGCACC+AGG | - | chr4.3:13324279-13324298 | None:intergenic | 45.0% | |
| GCCAAAATCACGGTGACAAA+AGG | - | chr4.3:13323531-13323550 | None:intergenic | 45.0% | |
| GGCAACTTCAAAGGTTTGAG+CGG | + | chr4.3:13323331-13323350 | MS.gene065974:intron | 45.0% | |
| GTTCATTGGTCCTTCAGCAT+TGG | + | chr4.3:13322701-13322720 | MS.gene065974:CDS | 45.0% | |
| TATATCAGAGACCCAGACTC+TGG | + | chr4.3:13324170-13324189 | MS.gene065974:CDS | 45.0% | |
| TCATTGTTAGTGCCTGAGTC+AGG | + | chr4.3:13323062-13323081 | MS.gene065974:CDS | 45.0% | |
| TGCAATGATGGCATTCGTGA+TGG | + | chr4.3:13324386-13324405 | MS.gene065974:CDS | 45.0% | |
| TGTTGCATTTCGATGTGGGT+GGG | + | chr4.3:13322755-13322774 | MS.gene065974:CDS | 45.0% | |
| TTGAACCATCCCAATGCTGA+AGG | - | chr4.3:13322714-13322733 | None:intergenic | 45.0% | |
| TTTGATGAGAGTGGCGACAT+TGG | + | chr4.3:13322978-13322997 | MS.gene065974:CDS | 45.0% | |
| ! | ATATCGTGTTCTGGTGTTGG+TGG | + | chr4.3:13322945-13322964 | MS.gene065974:CDS | 45.0% |
| ! | ATTCATTTTCCGGTGATCGG+CGG | - | chr4.3:13322272-13322291 | None:intergenic | 45.0% |
| !! | CGACATTGGTGTCGATAGAT+GGG | + | chr4.3:13322992-13323011 | MS.gene065974:CDS | 45.0% |
| !!! | GTTTTTGGTGAAGGGTTTGG+TGG | + | chr4.3:13322848-13322867 | MS.gene065974:CDS | 45.0% |
| !!! | TGGGTTTTTGGTGAAGGGTT+TGG | + | chr4.3:13322845-13322864 | MS.gene065974:CDS | 45.0% |
| AAGAGGGTTGTGTGTCTAGG+TGG | - | chr4.3:13322212-13322231 | None:intergenic | 50.0% | |
| AATTGAACGACGGCGGATAG+TGG | - | chr4.3:13322247-13322266 | None:intergenic | 50.0% | |
| AGTAGCGCCAATTCGACCAA+CGG | + | chr4.3:13322309-13322328 | MS.gene065974:CDS | 50.0% | |
| ATCGGCGGAGAATTGAACGA+CGG | - | chr4.3:13322257-13322276 | None:intergenic | 50.0% | |
| CAGCGAGCAGAATATCTACC+TGG | + | chr4.3:13324258-13324277 | MS.gene065974:CDS | 50.0% | |
| CATCTTGGCATCCAGAGTCT+GGG | - | chr4.3:13324184-13324203 | None:intergenic | 50.0% | |
| CGAATTGGCGCTACTGGAAA+TGG | - | chr4.3:13322304-13322323 | None:intergenic | 50.0% | |
| GAGTCAGCTGAATCACCGAA+TGG | - | chr4.3:13322456-13322475 | None:intergenic | 50.0% | |
| GATATTCTGCTCGCTGCTCA+AGG | - | chr4.3:13324254-13324273 | None:intergenic | 50.0% | |
| GCAGAATATCTACCTGGTGC+TGG | + | chr4.3:13324264-13324283 | MS.gene065974:CDS | 50.0% | |
| GTGAAGAGGGTTGTGTGTCT+AGG | - | chr4.3:13322215-13322234 | None:intergenic | 50.0% | |
| GTTGCATTTCGATGTGGGTG+GGG | + | chr4.3:13322756-13322775 | MS.gene065974:CDS | 50.0% | |
| TCATCTTGGCATCCAGAGTC+TGG | - | chr4.3:13324185-13324204 | None:intergenic | 50.0% | |
| TTCAATTCTCCGCCGATCAC+CGG | + | chr4.3:13322260-13322279 | MS.gene065974:CDS | 50.0% | |
| ! | GATGTGGGTGGGGATTTTTG+TGG | + | chr4.3:13322766-13322785 | MS.gene065974:CDS | 50.0% |
| ! | TGAAGGCTGTGTTGGTCTGT+TGG | + | chr4.3:13323712-13323731 | MS.gene065974:intron | 50.0% |
| ! | TTGGTCCTTCAGCATTGGGA+TGG | + | chr4.3:13322706-13322725 | MS.gene065974:CDS | 50.0% |
| !! | GCGACATTGGTGTCGATAGA+TGG | + | chr4.3:13322991-13323010 | MS.gene065974:CDS | 50.0% |
| !! | GGTGATTCAGCTGACTCGTT+GGG | + | chr4.3:13322459-13322478 | MS.gene065974:CDS | 50.0% |
| AGCAGAACCACTCCTTTGCC+TGG | - | chr4.3:13324460-13324479 | None:intergenic | 55.0% | |
| AGGGTTGTGTGTCTAGGTGG+CGG | - | chr4.3:13322209-13322228 | None:intergenic | 55.0% | |
| CCTAGAACCAGGCAAAGGAG+TGG | + | chr4.3:13324450-13324469 | MS.gene065974:CDS | 55.0% | |
| GAAGAGGAGGGAGGAGATTC+CGG | - | chr4.3:13322180-13322199 | None:intergenic | 55.0% | |
| GAATCTCCTCCCTCCTCTTC+CGG | + | chr4.3:13322180-13322199 | MS.gene065974:CDS | 55.0% | |
| GTTGGTCGAATTGGCGCTAC+TGG | - | chr4.3:13322310-13322329 | None:intergenic | 55.0% | |
| ! | CCACTCCTTTGCCTGGTTCT+AGG | - | chr4.3:13324453-13324472 | None:intergenic | 55.0% |
| !! | CGGTGATTCAGCTGACTCGT+TGG | + | chr4.3:13322458-13322477 | MS.gene065974:CDS | 55.0% |
| GGCGGAGAATTGAACGACGG+CGG | - | chr4.3:13322254-13322273 | None:intergenic | 60.0% | |
| ! | AGTGGCGGAGGAAGGTGAAG+AGG | - | chr4.3:13322229-13322248 | None:intergenic | 60.0% |
| ! | GTGGCGGAGGAAGGTGAAGA+GGG | - | chr4.3:13322228-13322247 | None:intergenic | 60.0% |
| ! | TGAACGACGGCGGATAGTGG+CGG | - | chr4.3:13322244-13322263 | None:intergenic | 60.0% |
| ! | TGTGTCTAGGTGGCGGTGAC+CGG | - | chr4.3:13322202-13322221 | None:intergenic | 60.0% |
| TGGCGGTGACCGGAAGAGGA+GGG | - | chr4.3:13322192-13322211 | None:intergenic | 65.0% | |
| ! | TAGGTGGCGGTGACCGGAAG+AGG | - | chr4.3:13322196-13322215 | None:intergenic | 65.0% |
| CGGTGACCGGAAGAGGAGGG+AGG | - | chr4.3:13322189-13322208 | None:intergenic | 70.0% | |
| GTGGCGGTGACCGGAAGAGG+AGG | - | chr4.3:13322193-13322212 | None:intergenic | 70.0% | |
| ! | ACGACGGCGGATAGTGGCGG+AGG | - | chr4.3:13322241-13322260 | None:intergenic | 70.0% |
| ! | CGGCGGATAGTGGCGGAGGA+AGG | - | chr4.3:13322237-13322256 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 13322174 | 13324521 | 13322174 | ID=MS.gene065974 |
| chr4.3 | mRNA | 13322174 | 13324521 | 13322174 | ID=MS.gene065974.t1;Parent=MS.gene065974 |
| chr4.3 | exon | 13322174 | 13323112 | 13322174 | ID=MS.gene065974.t1.exon1;Parent=MS.gene065974.t1 |
| chr4.3 | CDS | 13322174 | 13323112 | 13322174 | ID=cds.MS.gene065974.t1;Parent=MS.gene065974.t1 |
| chr4.3 | exon | 13324036 | 13324521 | 13324036 | ID=MS.gene065974.t1.exon2;Parent=MS.gene065974.t1 |
| chr4.3 | CDS | 13324036 | 13324521 | 13324036 | ID=cds.MS.gene065974.t1;Parent=MS.gene065974.t1 |
| Gene Sequence |
| Protein sequence |
