AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055926


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055926.t1 MTR_7g086690 97.651 596 7 2 1 596 1 589 0.0 1162
MS.gene055926.t1 MTR_6g027570 63.870 584 195 7 12 595 10 577 0.0 650
MS.gene055926.t1 MTR_6g027580 48.649 592 281 9 5 590 12 586 1.17e-160 472
MS.gene055926.t1 MTR_8g021180 44.251 574 288 8 43 587 76 646 3.57e-144 432
MS.gene055926.t1 MTR_7g113730 32.071 449 238 11 97 528 59 457 3.93e-44 165
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055926.t1 AT5G17860 48.059 541 261 4 52 590 45 567 2.16e-167 489
MS.gene055926.t1 AT5G17850 53.645 535 226 10 60 590 43 559 2.95e-163 478
MS.gene055926.t1 AT5G17850 53.645 535 226 10 60 590 43 559 2.95e-163 478
MS.gene055926.t1 AT5G17860 46.939 539 235 3 52 590 45 532 4.14e-159 466
MS.gene055926.t1 AT1G54115 42.832 558 276 6 63 587 91 638 1.17e-150 448
MS.gene055926.t1 AT3G14070 43.716 549 282 7 63 587 92 637 1.65e-146 438
MS.gene055926.t1 AT1G08960 30.864 486 274 13 59 528 46 485 6.08e-54 192

Find 103 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTGGAAATTTCCCTTTAT+TGG 0.076464 7.3:+22190362 MS.gene055926:CDS
ACTTGGTTCTCTTCAATTTA+AGG 0.089846 7.3:+22191817 MS.gene055926:CDS
CACAAGGGTTGTTTGATTTA+AGG 0.133984 7.3:-22190296 None:intergenic
TCATCAAGCCTATTAGTTTA+TGG 0.163372 7.3:+22191233 MS.gene055926:CDS
ATTGGTCCTCTTCTATCTTT+TGG 0.196753 7.3:+22190410 MS.gene055926:CDS
AGCCTATTAGTTTATGGAAT+TGG 0.211692 7.3:+22191239 MS.gene055926:CDS
AGTTTATGGAATTGGGTTAT+TGG 0.214182 7.3:+22191247 MS.gene055926:CDS
AATTTAACAATGGCTTTAAA+TGG 0.222751 7.3:+22191506 MS.gene055926:CDS
ACTTCATTTCTCTTATTCTT+AGG 0.245806 7.3:+22191783 MS.gene055926:CDS
TTCAATACAGTTGTTGGATT+AGG 0.250157 7.3:+22191581 MS.gene055926:CDS
GCCAATGTCTCCCACAAATA+TGG 0.253071 7.3:-22191665 None:intergenic
TAGAATGTTACTTTATGTTT+TGG 0.260934 7.3:+22191061 MS.gene055926:CDS
ATTGGAAATTTCCCTTTATT+GGG 0.271619 7.3:+22190363 MS.gene055926:CDS
GGTGTCACTCTTCTCTCTCT+TGG 0.274952 7.3:+22190510 MS.gene055926:CDS
TTATTGGTTGGAATTATATT+AGG 0.290689 7.3:+22191263 MS.gene055926:CDS
AACTAATAGGCTTGATGAAT+TGG 0.297305 7.3:-22191228 None:intergenic
TCAATACAGTTGTTGGATTA+GGG 0.303269 7.3:+22191582 MS.gene055926:CDS
ATTGGATTCAACACTGTTCT+TGG 0.331351 7.3:+22190594 MS.gene055926:CDS
GCCTATTAGTTTATGGAATT+GGG 0.332807 7.3:+22191240 MS.gene055926:CDS
AAAAGGGTATGACCCAATAA+AGG 0.334456 7.3:-22190375 None:intergenic
AGGCTTTCACCAACTATTGC+TGG 0.335790 7.3:+22190489 MS.gene055926:CDS
GGGGCTCAAATAGCAATTTC+AGG 0.338302 7.3:+22191539 MS.gene055926:CDS
AAAGTTTCTGTTATTATTGT+TGG 0.338919 7.3:-22190199 None:intergenic
ACCCAATTCCATAAACTAAT+AGG 0.345445 7.3:-22191241 None:intergenic
TTTGGTTGTTGGATTGATTT+GGG 0.349011 7.3:+22191691 MS.gene055926:CDS
TATGGAGAAGGGAATGGTTC+AGG 0.354410 7.3:+22190956 MS.gene055926:CDS
CTTGTTTCTTTCAAAGGTAA+TGG 0.356613 7.3:+22190561 MS.gene055926:CDS
TTGTTTCTTTCAAAGGTAAT+GGG 0.357414 7.3:+22190562 MS.gene055926:CDS
ATTTCAGCTCAAGAATTAGT+AGG 0.359746 7.3:+22191386 MS.gene055926:CDS
CCTATCTTCAATACAGTTGT+TGG 0.365242 7.3:+22191575 MS.gene055926:CDS
CACAACAACACATGAAATAA+AGG 0.365515 7.3:-22190625 None:intergenic
GATGAAGCTGAAAGTGATTA+TGG 0.371129 7.3:+22190879 MS.gene055926:CDS
GTTTCACTTGGTTTCATATG+TGG 0.378949 7.3:+22191416 MS.gene055926:CDS
GTGTCACTCTTCTCTCTCTT+GGG 0.389245 7.3:+22190511 MS.gene055926:CDS
GGTGTTAATCCTTCAATACT+TGG 0.389771 7.3:+22191437 MS.gene055926:CDS
GATTTAGATGTTCCTCTACT+TGG 0.392499 7.3:+22190930 MS.gene055926:CDS
TTGTTACCATGGCTAGCTGC+AGG 0.398686 7.3:+22191335 MS.gene055926:CDS
TGGATTAACAGTACTTGCTT+GGG 0.408172 7.3:+22191457 MS.gene055926:CDS
TTTCCTTTGGATTCCATACA+AGG 0.420611 7.3:+22191193 MS.gene055926:CDS
TATCTCTTGTTACATCTACT+TGG 0.423353 7.3:+22191606 MS.gene055926:CDS
CCAACAACTGTATTGAAGAT+AGG 0.426620 7.3:-22191575 None:intergenic
ACTGTTAATCCAAGTATTGA+AGG 0.428915 7.3:-22191446 None:intergenic
GCAATTTCAGGTTGTTATGC+TGG 0.432764 7.3:+22191551 MS.gene055926:CDS
TTTATTTCATGTGTTGTTGT+GGG 0.434815 7.3:+22190627 MS.gene055926:CDS
TTGGATTAACAGTACTTGCT+TGG 0.435057 7.3:+22191456 MS.gene055926:CDS
TATGGAATTGGGTTATTGGT+TGG 0.441874 7.3:+22191251 MS.gene055926:CDS
CCAATAACCATAGAAACAAA+AGG 0.447694 7.3:-22190392 None:intergenic
CTTTATTTCATGTGTTGTTG+TGG 0.454161 7.3:+22190626 MS.gene055926:CDS
AATAACAGAAACTTTGTCTC+TGG 0.459319 7.3:+22190207 MS.gene055926:CDS
ACTCTTCTCTCTCTTGGGAA+TGG 0.465576 7.3:+22190516 MS.gene055926:CDS
GCCACACTTGTTTCTTTCAA+AGG 0.465678 7.3:+22190555 MS.gene055926:CDS
TTGTTCAGTGTCTTCATCAA+TGG 0.469754 7.3:+22190744 MS.gene055926:CDS
TGGTGAAAGCCTCAAAACTT+TGG 0.469895 7.3:-22190478 None:intergenic
TCCATATTTGTGGGAGACAT+TGG 0.474566 7.3:+22191664 MS.gene055926:CDS
CTAGGTATCACAATAGATGA+AGG 0.475246 7.3:-22191638 None:intergenic
CTTAGGCTTACTCAAACACT+TGG 0.475303 7.3:+22191800 MS.gene055926:CDS
CAGGTTCATAGCAATTCAAA+TGG 0.477046 7.3:+22190975 MS.gene055926:CDS
AAAGGGTATGACCCAATAAA+GGG 0.479389 7.3:-22190374 None:intergenic
ACAGGAATTGTTAATCTCCT+AGG 0.480184 7.3:-22191101 None:intergenic
GCTTTAAATGGTGGGCCAGA+GGG 0.482620 7.3:+22191518 MS.gene055926:CDS
ATGAAACTTGATGTAATGTT+AGG 0.494438 7.3:+22191740 MS.gene055926:CDS
TAACAATGGCTTTAAATGGT+GGG 0.499024 7.3:+22191510 MS.gene055926:CDS
GTCACATCTAGCAAAAGAAA+AGG 0.510055 7.3:+22190834 MS.gene055926:CDS
TTAACAATGGCTTTAAATGG+TGG 0.512871 7.3:+22191509 MS.gene055926:CDS
ATATGCCTCTTTACTTGCCT+AGG 0.517052 7.3:+22191084 MS.gene055926:CDS
ATCAATGTCGTTGTGGCAGT+TGG 0.517892 7.3:+22190771 MS.gene055926:CDS
TTTCAGCTCAAGAATTAGTA+GGG 0.519227 7.3:+22191387 MS.gene055926:CDS
GTAGGGTTGTTAGTTTCACT+TGG 0.521163 7.3:+22191404 MS.gene055926:CDS
GGTAATGGGACACAAGGCAT+TGG 0.522056 7.3:+22190576 MS.gene055926:CDS
TTTAAATGGTGGGCCAGAGG+GGG 0.522665 7.3:+22191520 MS.gene055926:CDS
TGTTACCATGGCTAGCTGCA+GGG 0.525417 7.3:+22191336 MS.gene055926:CDS
TCCCACAAATATGGATCTCT+AGG 0.527255 7.3:-22191656 None:intergenic
CAAAGGAAAGCTAATAAAAG+TGG 0.528694 7.3:-22191179 None:intergenic
GGATTCAACACTGTTCTTGG+TGG 0.529370 7.3:+22190597 MS.gene055926:CDS
TACCTAGAGATCCATATTTG+TGG 0.534234 7.3:+22191654 MS.gene055926:CDS
CTCTGGTGTCACTGATGATG+AGG 0.535420 7.3:+22190224 MS.gene055926:CDS
GGCTTTAAATGGTGGGCCAG+AGG 0.537518 7.3:+22191517 MS.gene055926:CDS
CAAGAAAATTCTTGTTACCA+TGG 0.539455 7.3:+22191324 MS.gene055926:CDS
TTGGAGAGATTATCAAGAGA+AGG 0.561396 7.3:-22190459 None:intergenic
ACCTAGAGATCCATATTTGT+GGG 0.562034 7.3:+22191655 MS.gene055926:CDS
CAATAACCATAGAAACAAAA+GGG 0.563756 7.3:-22190391 None:intergenic
GGATTAACAGTACTTGCTTG+GGG 0.569748 7.3:+22191458 MS.gene055926:CDS
CTTTAAATGGTGGGCCAGAG+GGG 0.577285 7.3:+22191519 MS.gene055926:CDS
TATGGTGATTCAAGAAGTCA+TGG 0.578121 7.3:+22190897 MS.gene055926:CDS
TTTCCTTGTATGGAATCCAA+AGG 0.578564 7.3:-22191196 None:intergenic
AGAGTGACACCAGCAATAGT+TGG 0.584420 7.3:-22190498 None:intergenic
AAACTTGATGTAATGTTAGG+TGG 0.601656 7.3:+22191743 MS.gene055926:CDS
TTTAGTGACTAATTTAACAA+TGG 0.604981 7.3:+22191496 MS.gene055926:CDS
AATCTCCTAGGCAAGTAAAG+AGG 0.606669 7.3:-22191089 None:intergenic
TTCAAAGGTAATGGGACACA+AGG 0.612012 7.3:+22190570 MS.gene055926:CDS
ACATAGCCTTGTGTGACACA+AGG 0.613048 7.3:-22190312 None:intergenic
TATTAGCCAAAAGATAGAAG+AGG 0.617012 7.3:-22190416 None:intergenic
CTTGATGTAATGTTAGGTGG+AGG 0.620529 7.3:+22191746 MS.gene055926:CDS
ACAAACCCTGCAGCTAGCCA+TGG 0.621070 7.3:-22191341 None:intergenic
GATTCAAGAAGTCATGGCAA+TGG 0.631409 7.3:+22190903 MS.gene055926:CDS
TAGGTATCACAATAGATGAA+GGG 0.638422 7.3:-22191637 None:intergenic
GATTAACAGTACTTGCTTGG+GGG 0.639126 7.3:+22191459 MS.gene055926:CDS
AACAACCCTTGTGTCACACA+AGG 0.639893 7.3:+22190306 MS.gene055926:CDS
CATAGCCTTGTGTGACACAA+GGG 0.653566 7.3:-22190311 None:intergenic
ACCTTTGAAAGAAACAAGTG+TGG 0.657131 7.3:-22190556 None:intergenic
TTCTCCATAAAACCAAGTAG+AGG 0.658159 7.3:-22190942 None:intergenic
GGTTTGTGATGAGTGTGACA+TGG 0.672642 7.3:+22191357 MS.gene055926:CDS
TGGTGAAATCAATGTCGTTG+TGG 0.682318 7.3:+22190764 MS.gene055926:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTTTCTGTTATTATTGT+TGG - chr7.3:22190202-22190221 None:intergenic 20.0%
!! TTTAGTGACTAATTTAACAA+TGG + chr7.3:22191496-22191515 MS.gene055926:CDS 20.0%
!!! AATTTAACAATGGCTTTAAA+TGG + chr7.3:22191506-22191525 MS.gene055926:CDS 20.0%
!!! TACATTTTCTATTGCAAAAT+TGG + chr7.3:22190345-22190364 MS.gene055926:CDS 20.0%
!!! TAGAATGTTACTTTATGTTT+TGG + chr7.3:22191061-22191080 MS.gene055926:CDS 20.0%
!!! TTATTGGTTGGAATTATATT+AGG + chr7.3:22191263-22191282 MS.gene055926:CDS 20.0%
!!! TTTTGCAATAGAAAATGTAA+AGG - chr7.3:22190344-22190363 None:intergenic 20.0%
! AATTGGAAATTTCCCTTTAT+TGG + chr7.3:22190362-22190381 MS.gene055926:CDS 25.0%
! ACTTCATTTCTCTTATTCTT+AGG + chr7.3:22191783-22191802 MS.gene055926:CDS 25.0%
! ATGAAACTTGATGTAATGTT+AGG + chr7.3:22191740-22191759 MS.gene055926:CDS 25.0%
! ATTGGAAATTTCCCTTTATT+GGG + chr7.3:22190363-22190382 MS.gene055926:CDS 25.0%
! CAATAACCATAGAAACAAAA+GGG - chr7.3:22190394-22190413 None:intergenic 25.0%
! GAAAAACACAAAACAACAAA+AGG - chr7.3:22190125-22190144 None:intergenic 25.0%
!! TTGTTTCTTTCAAAGGTAAT+GGG + chr7.3:22190562-22190581 MS.gene055926:CDS 25.0%
!! TTTATTTCATGTGTTGTTGT+GGG + chr7.3:22190627-22190646 MS.gene055926:CDS 25.0%
AAACTTGATGTAATGTTAGG+TGG + chr7.3:22191743-22191762 MS.gene055926:CDS 30.0%
AACTAATAGGCTTGATGAAT+TGG - chr7.3:22191231-22191250 None:intergenic 30.0%
AATAACAGAAACTTTGTCTC+TGG + chr7.3:22190207-22190226 MS.gene055926:CDS 30.0%
ACCCAATTCCATAAACTAAT+AGG - chr7.3:22191244-22191263 None:intergenic 30.0%
AGTTTATGGAATTGGGTTAT+TGG + chr7.3:22191247-22191266 MS.gene055926:CDS 30.0%
ATTTCAGCTCAAGAATTAGT+AGG + chr7.3:22191386-22191405 MS.gene055926:CDS 30.0%
CAAAGGAAAGCTAATAAAAG+TGG - chr7.3:22191182-22191201 None:intergenic 30.0%
CAAGAAAATTCTTGTTACCA+TGG + chr7.3:22191324-22191343 MS.gene055926:CDS 30.0%
CACAACAACACATGAAATAA+AGG - chr7.3:22190628-22190647 None:intergenic 30.0%
CCAATAACCATAGAAACAAA+AGG - chr7.3:22190395-22190414 None:intergenic 30.0%
TAGGTATCACAATAGATGAA+GGG - chr7.3:22191640-22191659 None:intergenic 30.0%
TATCTCTTGTTACATCTACT+TGG + chr7.3:22191606-22191625 MS.gene055926:CDS 30.0%
TATTAGCCAAAAGATAGAAG+AGG - chr7.3:22190419-22190438 None:intergenic 30.0%
TCAATACAGTTGTTGGATTA+GGG + chr7.3:22191582-22191601 MS.gene055926:CDS 30.0%
TCTGAGAAAAACATGTTCAT+AGG - chr7.3:22190166-22190185 None:intergenic 30.0%
TTCAATACAGTTGTTGGATT+AGG + chr7.3:22191581-22191600 MS.gene055926:CDS 30.0%
TTTCAGCTCAAGAATTAGTA+GGG + chr7.3:22191387-22191406 MS.gene055926:CDS 30.0%
! AATAGCAATTTTCACAACTG+AGG + chr7.3:22191289-22191308 MS.gene055926:CDS 30.0%
! ACTTGGTTCTCTTCAATTTA+AGG + chr7.3:22191817-22191836 MS.gene055926:CDS 30.0%
! AGCCTATTAGTTTATGGAAT+TGG + chr7.3:22191239-22191258 MS.gene055926:CDS 30.0%
! ATAATCTCTCCAAAGTTTTG+AGG + chr7.3:22190469-22190488 MS.gene055926:CDS 30.0%
! CATGGTAACAAGAATTTTCT+TGG - chr7.3:22191326-22191345 None:intergenic 30.0%
! CATTTTTCTTCACAAACAAC+AGG - chr7.3:22191122-22191141 None:intergenic 30.0%
! CTGTTGTTTGTGAAGAAAAA+TGG + chr7.3:22191120-22191139 MS.gene055926:CDS 30.0%
! CTTGTTTCTTTCAAAGGTAA+TGG + chr7.3:22190561-22190580 MS.gene055926:CDS 30.0%
! CTTTATTTCATGTGTTGTTG+TGG + chr7.3:22190626-22190645 MS.gene055926:CDS 30.0%
! GCCTATTAGTTTATGGAATT+GGG + chr7.3:22191240-22191259 MS.gene055926:CDS 30.0%
! TCATCAAGCCTATTAGTTTA+TGG + chr7.3:22191233-22191252 MS.gene055926:CDS 30.0%
! TTTGGTTGTTGGATTGATTT+GGG + chr7.3:22191691-22191710 MS.gene055926:CDS 30.0%
!! ACTGTTAATCCAAGTATTGA+AGG - chr7.3:22191449-22191468 None:intergenic 30.0%
!! TAACAATGGCTTTAAATGGT+GGG + chr7.3:22191510-22191529 MS.gene055926:CDS 30.0%
!! TGGTTTTTGTTTGATGTATG+TGG + chr7.3:22190791-22190810 MS.gene055926:CDS 30.0%
!! TTAACAATGGCTTTAAATGG+TGG + chr7.3:22191509-22191528 MS.gene055926:CDS 30.0%
!! TTTTGGTTGTTGGATTGATT+TGG + chr7.3:22191690-22191709 MS.gene055926:CDS 30.0%
!!! CACTTTTATTAGCTTTCCTT+TGG + chr7.3:22191180-22191199 MS.gene055926:CDS 30.0%
!!! CCTTTTGTTTCTATGGTTAT+TGG + chr7.3:22190392-22190411 MS.gene055926:CDS 30.0%
ACAGGAATTGTTAATCTCCT+AGG - chr7.3:22191104-22191123 None:intergenic 35.0%
ACCTAGAGATCCATATTTGT+GGG + chr7.3:22191655-22191674 MS.gene055926:CDS 35.0%
ATTGGATTCAACACTGTTCT+TGG + chr7.3:22190594-22190613 MS.gene055926:CDS 35.0%
CAAAGTGAAAAACATGCGTT+TGG - chr7.3:22190085-22190104 None:intergenic 35.0%
CAGGTTCATAGCAATTCAAA+TGG + chr7.3:22190975-22190994 MS.gene055926:CDS 35.0%
CCAACAACTGTATTGAAGAT+AGG - chr7.3:22191578-22191597 None:intergenic 35.0%
CCTATCTTCAATACAGTTGT+TGG + chr7.3:22191575-22191594 MS.gene055926:CDS 35.0%
CTAGGTATCACAATAGATGA+AGG - chr7.3:22191641-22191660 None:intergenic 35.0%
GATGAAGCTGAAAGTGATTA+TGG + chr7.3:22190879-22190898 MS.gene055926:CDS 35.0%
GATTTAGATGTTCCTCTACT+TGG + chr7.3:22190930-22190949 MS.gene055926:CDS 35.0%
GGTGTTAATCCTTCAATACT+TGG + chr7.3:22191437-22191456 MS.gene055926:CDS 35.0%
GTCACATCTAGCAAAAGAAA+AGG + chr7.3:22190834-22190853 MS.gene055926:CDS 35.0%
GTTTCACTTGGTTTCATATG+TGG + chr7.3:22191416-22191435 MS.gene055926:CDS 35.0%
TACCTAGAGATCCATATTTG+TGG + chr7.3:22191654-22191673 MS.gene055926:CDS 35.0%
TATGGAATTGGGTTATTGGT+TGG + chr7.3:22191251-22191270 MS.gene055926:CDS 35.0%
TATGGTGATTCAAGAAGTCA+TGG + chr7.3:22190897-22190916 MS.gene055926:CDS 35.0%
TGGATTAACAGTACTTGCTT+GGG + chr7.3:22191457-22191476 MS.gene055926:CDS 35.0%
TTCTCCATAAAACCAAGTAG+AGG - chr7.3:22190945-22190964 None:intergenic 35.0%
TTGGAGAGATTATCAAGAGA+AGG - chr7.3:22190462-22190481 None:intergenic 35.0%
TTGGATTAACAGTACTTGCT+TGG + chr7.3:22191456-22191475 MS.gene055926:CDS 35.0%
TTGTTCAGTGTCTTCATCAA+TGG + chr7.3:22190744-22190763 MS.gene055926:CDS 35.0%
TTTCCTTGTATGGAATCCAA+AGG - chr7.3:22191199-22191218 None:intergenic 35.0%
TTTCCTTTGGATTCCATACA+AGG + chr7.3:22191193-22191212 MS.gene055926:CDS 35.0%
! AAAAGGGTATGACCCAATAA+AGG - chr7.3:22190378-22190397 None:intergenic 35.0%
! AAAGGGTATGACCCAATAAA+GGG - chr7.3:22190377-22190396 None:intergenic 35.0%
! ACCTTTGAAAGAAACAAGTG+TGG - chr7.3:22190559-22190578 None:intergenic 35.0%
! ATTGGTCCTCTTCTATCTTT+TGG + chr7.3:22190410-22190429 MS.gene055926:CDS 35.0%
! CACAAGGGTTGTTTGATTTA+AGG - chr7.3:22190299-22190318 None:intergenic 35.0%
! GAGAAACTGTTTTCCTTGTA+TGG - chr7.3:22191209-22191228 None:intergenic 35.0%
! GGTAACAAGAATTTTCTTGG+AGG - chr7.3:22191323-22191342 None:intergenic 35.0%
!!! ACATTGGCATTTTTGGTTGT+TGG + chr7.3:22191680-22191699 MS.gene055926:CDS 35.0%
!!! CTACTTGGTTTTATGGAGAA+GGG + chr7.3:22190945-22190964 MS.gene055926:CDS 35.0%
!!! GTCATACCCTTTTGTTTCTA+TGG + chr7.3:22190385-22190404 MS.gene055926:CDS 35.0%
!!! TCTACTTGGTTTTATGGAGA+AGG + chr7.3:22190944-22190963 MS.gene055926:CDS 35.0%
!!! TGTTCCTCTACTTGGTTTTA+TGG + chr7.3:22190938-22190957 MS.gene055926:CDS 35.0%
AATCTCCTAGGCAAGTAAAG+AGG - chr7.3:22191092-22191111 None:intergenic 40.0%
ATATGCCTCTTTACTTGCCT+AGG + chr7.3:22191084-22191103 MS.gene055926:CDS 40.0%
CTTAGGCTTACTCAAACACT+TGG + chr7.3:22191800-22191819 MS.gene055926:CDS 40.0%
CTTGATGTAATGTTAGGTGG+AGG + chr7.3:22191746-22191765 MS.gene055926:CDS 40.0%
GATTAACAGTACTTGCTTGG+GGG + chr7.3:22191459-22191478 MS.gene055926:CDS 40.0%
GATTCAAGAAGTCATGGCAA+TGG + chr7.3:22190903-22190922 MS.gene055926:CDS 40.0%
GGATTAACAGTACTTGCTTG+GGG + chr7.3:22191458-22191477 MS.gene055926:CDS 40.0%
TCCATATTTGTGGGAGACAT+TGG + chr7.3:22191664-22191683 MS.gene055926:CDS 40.0%
TCCCACAAATATGGATCTCT+AGG - chr7.3:22191659-22191678 None:intergenic 40.0%
TGGTGAAAGCCTCAAAACTT+TGG - chr7.3:22190481-22190500 None:intergenic 40.0%
TGGTGAAATCAATGTCGTTG+TGG + chr7.3:22190764-22190783 MS.gene055926:CDS 40.0%
! GCCACACTTGTTTCTTTCAA+AGG + chr7.3:22190555-22190574 MS.gene055926:CDS 40.0%
! GTAGGGTTGTTAGTTTCACT+TGG + chr7.3:22191404-22191423 MS.gene055926:CDS 40.0%
!! GCAATTTCAGGTTGTTATGC+TGG + chr7.3:22191551-22191570 MS.gene055926:CDS 40.0%
!! TTCAAAGGTAATGGGACACA+AGG + chr7.3:22190570-22190589 MS.gene055926:CDS 40.0%
!!! TGGTTTTATGGAGAAGGGAA+TGG + chr7.3:22190950-22190969 MS.gene055926:CDS 40.0%
AACAACCCTTGTGTCACACA+AGG + chr7.3:22190306-22190325 MS.gene055926:CDS 45.0%
ACTCTTCTCTCTCTTGGGAA+TGG + chr7.3:22190516-22190535 MS.gene055926:CDS 45.0%
AGAGTGACACCAGCAATAGT+TGG - chr7.3:22190501-22190520 None:intergenic 45.0%
AGGCTTTCACCAACTATTGC+TGG + chr7.3:22190489-22190508 MS.gene055926:CDS 45.0%
ATCAATGTCGTTGTGGCAGT+TGG + chr7.3:22190771-22190790 MS.gene055926:CDS 45.0%
CTTGCTTGGGGGAATTCAAT+TGG + chr7.3:22191470-22191489 MS.gene055926:CDS 45.0%
GCCAATGTCTCCCACAAATA+TGG - chr7.3:22191668-22191687 None:intergenic 45.0%
GGATTCAACACTGTTCTTGG+TGG + chr7.3:22190597-22190616 MS.gene055926:CDS 45.0%
GGGGCTCAAATAGCAATTTC+AGG + chr7.3:22191539-22191558 MS.gene055926:CDS 45.0%
GGTTTGTGATGAGTGTGACA+TGG + chr7.3:22191357-22191376 MS.gene055926:CDS 45.0%
TATGGAGAAGGGAATGGTTC+AGG + chr7.3:22190956-22190975 MS.gene055926:CDS 45.0%
! GTGGGAGACATTGGCATTTT+TGG + chr7.3:22191673-22191692 MS.gene055926:CDS 45.0%
! GTGTCACTCTTCTCTCTCTT+GGG + chr7.3:22190511-22190530 MS.gene055926:CDS 45.0%
!! ACATAGCCTTGTGTGACACA+AGG - chr7.3:22190315-22190334 None:intergenic 45.0%
!! CATAGCCTTGTGTGACACAA+GGG - chr7.3:22190314-22190333 None:intergenic 45.0%
! TGTTACCATGGCTAGCTGCA+GGG + chr7.3:22191336-22191355 MS.gene055926:CDS 50.0%
! TTGTTACCATGGCTAGCTGC+AGG + chr7.3:22191335-22191354 MS.gene055926:CDS 50.0%
!! ATTGCTATTTGAGCCCCCTC+TGG - chr7.3:22191536-22191555 None:intergenic 50.0%
!! CTCTGGTGTCACTGATGATG+AGG + chr7.3:22190224-22190243 MS.gene055926:CDS 50.0%
!! CTTTAAATGGTGGGCCAGAG+GGG + chr7.3:22191519-22191538 MS.gene055926:CDS 50.0%
!! GCTTTAAATGGTGGGCCAGA+GGG + chr7.3:22191518-22191537 MS.gene055926:CDS 50.0%
!! GGTAATGGGACACAAGGCAT+TGG + chr7.3:22190576-22190595 MS.gene055926:CDS 50.0%
!! GGTGTCACTCTTCTCTCTCT+TGG + chr7.3:22190510-22190529 MS.gene055926:CDS 50.0%
!! TTTAAATGGTGGGCCAGAGG+GGG + chr7.3:22191520-22191539 MS.gene055926:CDS 50.0%
ACAAACCCTGCAGCTAGCCA+TGG - chr7.3:22191344-22191363 None:intergenic 55.0%
!! GGCTTTAAATGGTGGGCCAG+AGG + chr7.3:22191517-22191536 MS.gene055926:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 22190063 22191853 22190063 ID=MS.gene055926
chr7.3 mRNA 22190063 22191853 22190063 ID=MS.gene055926.t1;Parent=MS.gene055926
chr7.3 exon 22190063 22191853 22190063 ID=MS.gene055926.t1.exon1;Parent=MS.gene055926.t1
chr7.3 CDS 22190063 22191853 22190063 ID=cds.MS.gene055926.t1;Parent=MS.gene055926.t1
Gene Sequence

>MS.gene055926

ATGTCACAAATGTCACAATCCAAACGCATGTTTTTCACTTTGTTCTTAAACACATCTTTCCTTTTGTTGTTTTGTGTTTTTCTTGTTCTTCACTTTCAATCCTATGAACATGTTTTTCTCAGAAACAAAAACAAAACCAACAATAATAACAGAAACTTTGTCTCTGGTGTCACTGATGATGAGGATTGTAAAAGTTTTCATAGCTTAAGTGATTATAAAGCTAAGTGCTTTTACCTTAAATCAAACAACCCTTGTGTCACACAAGGCTATGTTGATTACCTTTACATTTTCTATTGCAAAATTGGAAATTTCCCTTTATTGGGTCATACCCTTTTGTTTCTATGGTTATTGGTCCTCTTCTATCTTTTGGCTAATACAGCTTCTGAGTATTTTTGTCCTTCTCTTGATAATCTCTCCAAAGTTTTGAGGCTTTCACCAACTATTGCTGGTGTCACTCTTCTCTCTCTTGGGAATGGTGCTAATGATGTTTTTGCCACACTTGTTTCTTTCAAAGGTAATGGGACACAAGGCATTGGATTCAACACTGTTCTTGGTGGTGCTTCCTTTATTTCATGTGTTGTTGTGGGAATTATAAGTATTTCAGTTAGACATAGAGAGATTCGTGTTCAAAAATCTGCTTTGATAAGAGATGTTTGTTTTCTTCTGTTTGTTCTTGTTTGTTTGTTCAGTGTCTTCATCAATGGTGAAATCAATGTCGTTGTGGCAGTTGGTTTTTGTTTGATGTATGTGGTTTATGTTGCTATTGTTTATGTCACATCTAGCAAAAGAAAAGGTGTTTGTGATGAAGATGATGTTGATGAAGCTGAAAGTGATTATGGTGATTCAAGAAGTCATGGCAATGGCAATGATTTAGATGTTCCTCTACTTGGTTTTATGGAGAAGGGAATGGTTCAGGTTCATAGCAATTCAAATGGACTTCAAGAATGTGAGTTCAAAATTGAGAAGAATATTTCTTGCTGTGAAAAATCTTCAATATGTAGAATGTTACTTTATGTTTTGGATATGCCTCTTTACTTGCCTAGGAGATTAACAATTCCTGTTGTTTGTGAAGAAAAATGGTCTAAAGCATATGCAGTTTCTTCAGCTATACTTTCACCACTTTTATTAGCTTTCCTTTGGATTCCATACAAGGAAAACAGTTTCTCCAATTCATCAAGCCTATTAGTTTATGGAATTGGGTTATTGGTTGGAATTATATTAGGAGTAATAGCAATTTTCACAACTGAGGCATCAAATCCTCCAAGAAAATTCTTGTTACCATGGCTAGCTGCAGGGTTTGTGATGAGTGTGACATGGAGTTACATTTCAGCTCAAGAATTAGTAGGGTTGTTAGTTTCACTTGGTTTCATATGTGGTGTTAATCCTTCAATACTTGGATTAACAGTACTTGCTTGGGGGAATTCAATTGGTGATTTAGTGACTAATTTAACAATGGCTTTAAATGGTGGGCCAGAGGGGGCTCAAATAGCAATTTCAGGTTGTTATGCTGGTCCTATCTTCAATACAGTTGTTGGATTAGGGTTATCTCTTGTTACATCTACTTGGAGTGAGTACCCTTCATCTATTGTGATACCTAGAGATCCATATTTGTGGGAGACATTGGCATTTTTGGTTGTTGGATTGATTTGGGCACTTGTTGTTTTGATTAGAAGAGATATGAAACTTGATGTAATGTTAGGTGGAGGACTATTAGCTATTTACTTCATTTCTCTTATTCTTAGGCTTACTCAAACACTTGGTTCTCTTCAATTTAAGGATATGTTAGTGTGA

Protein sequence

>MS.gene055926.t1

MSQMSQSKRMFFTLFLNTSFLLLFCVFLVLHFQSYEHVFLRNKNKTNNNNRNFVSGVTDDEDCKSFHSLSDYKAKCFYLKSNNPCVTQGYVDYLYIFYCKIGNFPLLGHTLLFLWLLVLFYLLANTASEYFCPSLDNLSKVLRLSPTIAGVTLLSLGNGANDVFATLVSFKGNGTQGIGFNTVLGGASFISCVVVGIISISVRHREIRVQKSALIRDVCFLLFVLVCLFSVFINGEINVVVAVGFCLMYVVYVAIVYVTSSKRKGVCDEDDVDEAESDYGDSRSHGNGNDLDVPLLGFMEKGMVQVHSNSNGLQECEFKIEKNISCCEKSSICRMLLYVLDMPLYLPRRLTIPVVCEEKWSKAYAVSSAILSPLLLAFLWIPYKENSFSNSSSLLVYGIGLLVGIILGVIAIFTTEASNPPRKFLLPWLAAGFVMSVTWSYISAQELVGLLVSLGFICGVNPSILGLTVLAWGNSIGDLVTNLTMALNGGPEGAQIAISGCYAGPIFNTVVGLGLSLVTSTWSEYPSSIVIPRDPYLWETLAFLVVGLIWALVVLIRRDMKLDVMLGGGLLAIYFISLILRLTQTLGSLQFKDMLV