AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06598

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06598.t1 MTR_3g092900 98.630 365 5 0 1 365 1 365 0.0 753
MS.gene06598.t1 MTR_5g098170 67.330 352 114 1 13 363 12 363 0.0 518
MS.gene06598.t1 MTR_7g118320 55.966 352 153 1 14 363 11 362 3.29e-149 426
MS.gene06598.t1 MTR_8g068750 53.591 362 166 1 4 363 16 377 3.06e-145 416
MS.gene06598.t1 MTR_0591s0010 53.315 362 167 1 4 363 16 377 3.64e-145 416
MS.gene06598.t1 MTR_8g068690 52.486 362 170 1 4 363 15 376 1.31e-138 399
MS.gene06598.t1 MTR_7g118300 52.586 348 164 1 16 363 29 375 2.37e-133 385
MS.gene06598.t1 MTR_8g068870 51.705 352 168 1 14 363 12 363 1.24e-132 384
MS.gene06598.t1 MTR_6g078850 51.282 351 167 2 16 362 32 382 1.21e-126 373
MS.gene06598.t1 MTR_1g096310 48.901 364 179 6 6 363 10 372 5.83e-120 352
MS.gene06598.t1 MTR_8g068730 47.514 362 156 2 4 363 16 345 9.73e-119 347
MS.gene06598.t1 MTR_8g068570 49.697 330 137 2 4 331 16 318 1.54e-115 338
MS.gene06598.t1 MTR_7g011900 46.439 351 184 4 16 363 21 370 5.22e-111 328
MS.gene06598.t1 MTR_8g024160 45.961 359 149 2 7 363 13 328 4.36e-110 325
MS.gene06598.t1 MTR_7g012040 46.571 350 184 3 16 363 20 368 5.99e-109 323
MS.gene06598.t1 MTR_7g011990 47.159 352 177 6 16 363 21 367 1.23e-108 322
MS.gene06598.t1 MTR_7g012020 44.904 363 194 5 6 363 8 369 8.06e-107 318
MS.gene06598.t1 MTR_1g036460 44.350 354 188 5 17 363 19 370 4.30e-105 313
MS.gene06598.t1 MTR_2g055940 44.444 351 190 5 16 363 15 363 6.11e-105 313
MS.gene06598.t1 MTR_1g036490 42.742 372 202 6 1 363 1 370 2.42e-104 311
MS.gene06598.t1 MTR_3g021430 46.875 352 180 6 16 363 9 357 8.87e-104 310
MS.gene06598.t1 MTR_3g021440 46.197 355 182 7 14 363 20 370 1.84e-102 307
MS.gene06598.t1 MTR_7g012090 45.938 357 182 7 16 363 21 375 1.74e-101 305
MS.gene06598.t1 MTR_1g036510 41.129 372 207 7 1 363 16 384 5.04e-101 304
MS.gene06598.t1 MTR_7g012070 45.098 357 185 7 16 363 21 375 7.05e-101 303
MS.gene06598.t1 MTR_8g068690 53.030 264 122 1 4 265 15 278 2.74e-97 291
MS.gene06598.t1 MTR_8g068740 47.122 278 113 2 4 279 16 261 1.15e-83 256
MS.gene06598.t1 MTR_8g068600 50.833 240 113 2 41 278 27 263 3.94e-82 252
MS.gene06598.t1 MTR_7g012020 46.970 264 136 3 6 265 8 271 1.56e-79 246
MS.gene06598.t1 MTR_2g072790 39.548 354 202 8 15 363 8 354 1.32e-77 243
MS.gene06598.t1 MTR_1g050220 38.066 331 152 7 21 347 6 287 1.77e-73 230
MS.gene06598.t1 MTR_0017s0100 38.739 333 188 11 36 361 44 367 5.15e-72 229
MS.gene06598.t1 MTR_7g012020 46.531 245 127 3 6 246 8 252 2.00e-70 221
MS.gene06598.t1 MTR_3g096050 37.322 351 209 8 18 363 14 358 3.92e-70 224
MS.gene06598.t1 MTR_0079s0070 36.875 320 187 10 36 349 10 320 5.55e-68 217
MS.gene06598.t1 MTR_4g038440 36.875 320 187 10 36 349 44 354 1.09e-67 218
MS.gene06598.t1 MTR_1g036510 39.852 271 156 4 1 265 16 285 2.48e-67 214
MS.gene06598.t1 MTR_3g083620 37.273 330 192 10 35 359 39 358 1.39e-62 204
MS.gene06598.t1 MTR_3g096070 37.571 354 187 11 15 363 11 335 6.64e-62 202
MS.gene06598.t1 MTR_1g036510 38.800 250 146 4 1 244 16 264 1.62e-57 188
MS.gene06598.t1 MTR_1g076940 34.568 324 197 8 34 349 31 347 1.13e-53 181
MS.gene06598.t1 MTR_5g074680 31.677 322 207 9 34 349 32 346 5.38e-49 169
MS.gene06598.t1 MTR_5g074600 32.298 322 205 9 34 349 31 345 1.04e-47 165
MS.gene06598.t1 MTR_5g074580 31.056 322 209 8 34 349 32 346 9.77e-47 163
MS.gene06598.t1 MTR_3g096050 37.450 251 149 5 18 265 14 259 1.69e-45 157
MS.gene06598.t1 MTR_7g024520 30.790 367 224 11 1 358 1 346 2.39e-45 159
MS.gene06598.t1 MTR_4g079160 31.940 335 211 10 34 361 30 354 6.42e-45 158
MS.gene06598.t1 MTR_7g014510 30.904 343 224 7 11 349 10 343 6.58e-45 158
MS.gene06598.t1 MTR_8g068620 63.303 109 40 0 157 265 2 110 4.67e-44 148
MS.gene06598.t1 MTR_7g014570 30.612 343 220 6 11 349 10 338 8.02e-44 155
MS.gene06598.t1 MTR_5g074540 30.435 322 193 8 34 349 31 327 1.03e-41 149
MS.gene06598.t1 MTR_7g024500 30.000 320 209 7 33 349 29 336 1.08e-41 149
MS.gene06598.t1 MTR_4g088200 32.861 353 203 11 17 349 9 347 1.95e-41 149
MS.gene06598.t1 MTR_4g088345 28.986 345 227 9 11 349 10 342 5.69e-41 147
MS.gene06598.t1 MTR_4g088340 30.960 323 207 8 33 349 7 319 2.74e-40 145
MS.gene06598.t1 MTR_4g038440 34.894 235 140 8 36 265 44 270 1.46e-39 141
MS.gene06598.t1 MTR_8g068760 53.535 99 46 0 265 363 135 233 6.39e-36 130
MS.gene06598.t1 MTR_8g068760 45.082 122 65 1 21 140 20 141 3.81e-28 110
MS.gene06598.t1 MTR_5g074610 41.935 155 86 2 198 349 159 312 1.50e-35 132
MS.gene06598.t1 MTR_4g033150 32.099 324 207 8 34 349 31 349 4.94e-33 126
MS.gene06598.t1 MTR_4g088190 32.394 355 205 11 17 349 9 350 4.56e-32 124
MS.gene06598.t1 MTR_4g033015 30.925 346 221 9 17 349 9 349 6.53e-32 123
MS.gene06598.t1 MTR_4g033170 32.203 354 200 12 17 349 9 343 8.32e-32 123
MS.gene06598.t1 MTR_4g033200 31.790 324 208 8 34 349 31 349 1.72e-31 122
MS.gene06598.t1 MTR_8g068580 53.846 91 42 0 273 363 43 133 4.26e-31 115
MS.gene06598.t1 MTR_1g076930 30.705 241 157 6 29 265 3 237 2.75e-29 114
MS.gene06598.t1 MTR_4g033085 31.921 354 201 12 17 349 9 343 2.88e-29 116
MS.gene06598.t1 MTR_8g068590 44.800 125 67 1 17 139 8 132 8.42e-26 101
MS.gene06598.t1 MTR_4g025570 44.330 97 51 3 267 361 122 217 1.19e-17 81.3
MS.gene06598.t1 MTR_6g060290 34.706 170 93 5 10 177 17 170 1.44e-16 77.0
MS.gene06598.t1 MTR_7g118310 44.444 99 39 2 160 242 1 99 2.88e-13 66.2
MS.gene06598.t1 MTR_0794s0020 27.354 223 153 6 34 251 31 249 1.18e-12 67.4
MS.gene06598.t1 MTR_6g060280 50.943 53 21 1 218 265 2 54 1.82e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06598.t1 AT5G54160 76.986 365 82 1 1 365 1 363 0.0 598
MS.gene06598.t1 AT1G51990 47.429 350 181 3 15 361 11 360 3.86e-116 342
MS.gene06598.t1 AT1G51990 47.429 350 181 3 15 361 11 360 7.83e-116 341
MS.gene06598.t1 AT1G77520 45.682 359 187 4 13 363 23 381 1.37e-114 338
MS.gene06598.t1 AT1G33030 46.154 351 183 5 17 363 2 350 1.19e-111 330
MS.gene06598.t1 AT1G77530 45.405 370 190 5 2 363 16 381 1.98e-105 315
MS.gene06598.t1 AT1G63140 45.810 358 182 5 16 363 26 381 1.20e-100 303
MS.gene06598.t1 AT1G63140 45.810 358 182 5 16 363 46 401 1.31e-100 303
MS.gene06598.t1 AT1G21100 46.006 363 183 8 10 363 15 373 7.45e-99 298
MS.gene06598.t1 AT1G21130 45.455 363 185 8 10 363 15 373 1.43e-98 297
MS.gene06598.t1 AT5G53810 45.588 340 176 5 33 363 39 378 5.11e-98 296
MS.gene06598.t1 AT1G21110 44.904 363 187 8 10 363 15 373 1.27e-96 292
MS.gene06598.t1 AT1G21120 45.179 363 186 8 10 363 15 373 1.99e-96 291
MS.gene06598.t1 AT1G21120 45.179 363 186 8 10 363 63 421 1.08e-95 291
MS.gene06598.t1 AT1G76790 40.921 369 198 8 9 364 5 366 1.27e-86 266
MS.gene06598.t1 AT3G53140 38.202 356 209 5 15 363 8 359 1.11e-75 238
MS.gene06598.t1 AT1G33030 46.875 256 130 5 17 268 2 255 4.27e-75 234
MS.gene06598.t1 AT1G33030 47.036 253 128 5 17 265 2 252 1.88e-74 231
MS.gene06598.t1 AT5G37170 40.764 314 156 6 54 363 47 334 1.63e-72 229
MS.gene06598.t1 AT1G63140 47.104 259 126 4 16 265 46 302 4.45e-67 214
MS.gene06598.t1 AT1G21130 46.591 264 129 7 10 265 15 274 5.68e-65 208
MS.gene06598.t1 AT1G62900 50.244 205 101 1 160 363 1 205 1.89e-64 204
MS.gene06598.t1 AT5G37170 42.797 236 131 3 130 363 1 234 1.99e-62 200
MS.gene06598.t1 AT1G77530 44.444 252 129 4 2 246 16 263 3.40e-58 190
MS.gene06598.t1 AT5G37170 48.387 186 94 2 180 363 1 186 8.05e-58 186
MS.gene06598.t1 AT1G63140 44.167 240 123 4 16 246 46 283 6.70e-54 179
MS.gene06598.t1 AT4G35160 33.537 328 198 10 37 350 47 368 5.72e-47 164
MS.gene06598.t1 AT4G35150 38.835 206 117 3 154 350 106 311 4.78e-45 157

Find 83 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAAAATATCCCACTATTA+AGG 0.186659 3.3:-77583693 MS.gene06598:CDS
GGAAAGGTTCAGAGACTTTA+TGG 0.189052 3.3:-77587901 MS.gene06598:CDS
CTACATCAACAAGAGATTTA+AGG 0.256085 3.3:+77583750 None:intergenic
GGCTACTGTTGCTAAGTATT+TGG 0.264695 3.3:-77587875 MS.gene06598:CDS
ATTCCATTCAACAAGGCTTA+TGG 0.296668 3.3:-77583896 MS.gene06598:CDS
TTTGTGGCCAGGCTTGAATC+TGG 0.323494 3.3:+77582946 None:intergenic
TCCAACATGACGGGTGCATC+AGG 0.328032 3.3:+77587988 None:intergenic
TGCTCTTAATCTCATGAATC+AGG 0.330556 3.3:-77587824 MS.gene06598:CDS
GGACCGAATGTTGCGTCTCT+TGG 0.369354 3.3:-77587968 MS.gene06598:CDS
ACCTTGGAATCCAGCACCTT+TGG 0.375898 3.3:+77582840 None:intergenic
CATGAGATTAAGAGCAGAAA+TGG 0.384733 3.3:+77587831 None:intergenic
TTGCTTCTTCATCTGATATG+TGG 0.386592 3.3:+77588163 None:intergenic
AAAATTAATACCCTTAATAG+TGG 0.390711 3.3:+77583682 None:intergenic
TCAAAATATCCCACTATTAA+GGG 0.393613 3.3:-77583692 MS.gene06598:CDS
TACAATGGACTTTGAAACCT+TGG 0.398695 3.3:+77582824 None:intergenic
TGCTTCTTCATCTGATATGT+GGG 0.407456 3.3:+77588164 None:intergenic
GAGGATCTTGCCAAAGGTGC+TGG 0.410291 3.3:-77582850 MS.gene06598:CDS
CATCATGGAGTTTCTTAAGA+AGG 0.412081 3.3:-77582785 MS.gene06598:CDS
ATCACAACCATGGGTTCAAC+AGG 0.413894 3.3:-77588207 None:intergenic
TTGAAAACCTTGTTAAACCT+TGG 0.414420 3.3:+77583842 None:intergenic
ATTCCATAAGCCTTGTTGAA+TGG 0.429746 3.3:+77583893 None:intergenic
CTAAAAGATGCAGTCCTTGA+TGG 0.430133 3.3:-77583923 MS.gene06598:CDS
TTAGAAATCATTGCTAAAGC+TGG 0.441186 3.3:-77588066 MS.gene06598:CDS
GTTGATGTAGGTGGTGGTAC+TGG 0.442964 3.3:-77583737 MS.gene06598:CDS
GGTTCAGAGACTTTATGGTT+TGG 0.446742 3.3:-77587896 MS.gene06598:CDS
AGCTGAGAAGCAATTTCAAC+AGG 0.447205 3.3:+77588024 None:intergenic
AGGCTTGAATCTGGAGCCAC+TGG 0.454831 3.3:+77582955 None:intergenic
CTTAAATCTCTTGTTGATGT+AGG 0.455712 3.3:-77583749 MS.gene06598:CDS
TGTGTTCTCTCTTTCCCACC+TGG 0.462038 3.3:+77582883 None:intergenic
TGTGTAGGAGTTGAGCATGT+TGG 0.469251 3.3:-77583505 MS.gene06598:intron
GGTGCATCAGGGTTAGTTGT+TGG 0.470033 3.3:+77588000 None:intergenic
GCCAAAGGTGCTGGATTCCA+AGG 0.489804 3.3:-77582841 MS.gene06598:CDS
GATTCAAGCCTGGCCACAAA+AGG 0.496107 3.3:-77582943 MS.gene06598:CDS
TCTTCATCTGATATGTGGGT+TGG 0.496254 3.3:+77588168 None:intergenic
TAAAAGATGCAGTCCTTGAT+GGG 0.498813 3.3:-77583922 MS.gene06598:CDS
ATAAAGTCCTCATGGAAAGC+TGG 0.517764 3.3:-77587801 MS.gene06598:intron
AACATTCGGTCCAACATGAC+GGG 0.524717 3.3:+77587979 None:intergenic
TATTTGGTTAAGAATGAAGA+TGG 0.526519 3.3:-77587859 MS.gene06598:CDS
AAGGCCTTCAAAACCTGTGT+AGG 0.530395 3.3:+77583769 None:intergenic
TATAGTGGATTTGTCATGAC+TGG 0.531063 3.3:-77583065 MS.gene06598:intron
TCAGTTCGTACTCAACAAGA+TGG 0.533052 3.3:-77587922 MS.gene06598:CDS
CCCTGATGCACCCGTCATGT+TGG 0.535157 3.3:-77587989 MS.gene06598:CDS
TAAACCTTGGATCTGTTCCA+TGG 0.535558 3.3:+77583855 None:intergenic
AAATCTCTTGTTGATGTAGG+TGG 0.536337 3.3:-77583746 MS.gene06598:CDS
AAGCCAAGAGACGCAACATT+CGG 0.541027 3.3:+77587965 None:intergenic
ACAGGTGAAATTTGAGCACC+AGG 0.541601 3.3:+77588042 None:intergenic
TGCTTTCAACACATACATCA+TGG 0.542854 3.3:-77582800 MS.gene06598:CDS
AGTTTCACCTGTTGAACCCA+TGG 0.544126 3.3:+77588200 None:intergenic
ATCTGTTCCATGGTATTCAA+AGG 0.546956 3.3:+77583865 None:intergenic
GAAGATGCTCCATCTTATCC+AGG 0.550163 3.3:-77583641 MS.gene06598:intron
GTAGGAGTTGAGCATGTTGG+TGG 0.550218 3.3:-77583502 MS.gene06598:intron
GAATCAGGATAAAGTCCTCA+TGG 0.561400 3.3:-77587809 MS.gene06598:CDS
AAATTAATACCCTTAATAGT+GGG 0.568328 3.3:+77583683 None:intergenic
CATGTTTGTCAGTATTCCAA+AGG 0.570278 3.3:-77583476 MS.gene06598:CDS
ATCATGTTGGCTCATAATCC+AGG 0.578789 3.3:-77582901 MS.gene06598:CDS
TTGCTAGTTGCATGGCGAAG+AGG 0.583273 3.3:+77588139 None:intergenic
CAACATTCGGTCCAACATGA+CGG 0.583536 3.3:+77587978 None:intergenic
ATGGAGCATCTTCAATGACA+TGG 0.583754 3.3:+77583651 None:intergenic
TGGAGCATCTTCAATGACAT+GGG 0.584396 3.3:+77583652 None:intergenic
AGTGGCTCCAGATTCAAGCC+TGG 0.587972 3.3:-77582953 MS.gene06598:CDS
AACAGATCCAAGGTTTAACA+AGG 0.588192 3.3:-77583849 MS.gene06598:CDS
AATACCATGGAACAGATCCA+AGG 0.589150 3.3:-77583859 MS.gene06598:CDS
AAAATTCTTGAGACCTACAC+AGG 0.594762 3.3:-77583782 MS.gene06598:CDS
TCGTACTCAACAAGATGGAA+AGG 0.604548 3.3:-77587917 MS.gene06598:CDS
ATCATTGCTAAAGCTGGACC+TGG 0.610122 3.3:-77588060 MS.gene06598:CDS
TCACATTGATGTGATCATGT+TGG 0.610394 3.3:-77582914 MS.gene06598:CDS
AAAAGATGCAGTCCTTGATG+GGG 0.614980 3.3:-77583921 MS.gene06598:CDS
GAGTTTGAGGATCTTGCCAA+AGG 0.616335 3.3:-77582856 MS.gene06598:CDS
CCAACATGACGGGTGCATCA+GGG 0.622731 3.3:+77587989 None:intergenic
ATGACAGCCTTTGAATACCA+TGG 0.623586 3.3:-77583872 MS.gene06598:CDS
TGAAGCACTTGCTAGTTGCA+TGG 0.631483 3.3:+77588131 None:intergenic
TCTCTTGTTGATGTAGGTGG+TGG 0.632846 3.3:-77583743 MS.gene06598:CDS
GGCAGAATGCATACTTCCAG+TGG 0.643020 3.3:-77582971 MS.gene06598:CDS
TATGAGGCACTGCCAGACAA+TGG 0.650185 3.3:-77583006 MS.gene06598:CDS
AAGCCTGGCCACAAAAGGTG+TGG 0.656446 3.3:-77582938 MS.gene06598:CDS
AGACAATGGAAAAGTGATTG+TGG 0.657916 3.3:-77582992 MS.gene06598:CDS
GAGTACGAACTGAACAAGTG+AGG 0.669605 3.3:+77587932 None:intergenic
ATGTGTTGAAAGCATTACAA+TGG 0.671130 3.3:+77582809 None:intergenic
ATGTTGGCTCATAATCCAGG+TGG 0.673281 3.3:-77582898 MS.gene06598:CDS
TGTTGGCTCATAATCCAGGT+GGG 0.675248 3.3:-77582897 MS.gene06598:CDS
AAAGATGCAGTCCTTGATGG+GGG 0.691221 3.3:-77583920 MS.gene06598:CDS
GGAGCATCTTCAATGACATG+GGG 0.708903 3.3:+77583653 None:intergenic
TGAAATACCAGCTTTCCATG+AGG 0.735639 3.3:+77587794 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATATATATTT+TGG + chr3.3:77586349-77586368 None:intergenic 0.0%
!!! TTTTTTTATTTTTTTTTTTA+CGG + chr3.3:77584663-77584682 None:intergenic 0.0%
!! AACATATAGATATAATTAAT+GGG - chr3.3:77583278-77583297 MS.gene06598:intron 10.0%
!! TGAAATAAATAATATATGTT+TGG - chr3.3:77586733-77586752 MS.gene06598:intron 10.0%
!!! ACATATTTTTTTAACTTTTT+TGG + chr3.3:77585969-77585988 None:intergenic 10.0%
!!! AGATTTTTAACATTAATTAT+AGG + chr3.3:77583680-77583699 None:intergenic 10.0%
!!! ATAATGATATTATTTTTTTG+AGG + chr3.3:77586586-77586605 None:intergenic 10.0%
!!! ATAGAATACATTTTTTAATA+TGG - chr3.3:77586420-77586439 MS.gene06598:intron 10.0%
!!! ATTTTTAACATTAATTATAG+GGG + chr3.3:77583678-77583697 None:intergenic 10.0%
!!! CATATAGTATTAATTAATTT+TGG - chr3.3:77585870-77585889 MS.gene06598:intron 10.0%
!!! GATTTTTAACATTAATTATA+GGG + chr3.3:77583679-77583698 None:intergenic 10.0%
!!! TAATGTTAAAAATCTAAAAT+TGG - chr3.3:77583685-77583704 MS.gene06598:CDS 10.0%
!!! TATATATATATATATTTTGG+TGG + chr3.3:77586346-77586365 None:intergenic 10.0%
!!! TCTTAAAAGTTTTTTTTTTT+TGG + chr3.3:77584188-77584207 None:intergenic 10.0%
!!! TGTTTATTTAGTTAATTTTA+TGG - chr3.3:77585389-77585408 MS.gene06598:intron 10.0%
!! AAAGTAACAAAATAAACATT+AGG - chr3.3:77584560-77584579 MS.gene06598:intron 15.0%
!! ACAATAACTCTATTTATATA+GGG - chr3.3:77583440-77583459 MS.gene06598:intron 15.0%
!! ACATATAGATATAATTAATG+GGG - chr3.3:77583279-77583298 MS.gene06598:intron 15.0%
!! ATTCATAAGTCAATTAATAA+TGG + chr3.3:77585471-77585490 None:intergenic 15.0%
!! CAACATATAGATATAATTAA+TGG - chr3.3:77583277-77583296 MS.gene06598:intron 15.0%
!! TATACTATAATCCATTATTT+GGG + chr3.3:77586835-77586854 None:intergenic 15.0%
!! TCATATATATCTTGTAAAAT+AGG - chr3.3:77584618-77584637 MS.gene06598:intron 15.0%
!! TTGAAGTATATTAAATGTAA+AGG + chr3.3:77587727-77587746 None:intergenic 15.0%
!!! AATTTTTTATCAATATCCTA+TGG - chr3.3:77586647-77586666 MS.gene06598:intron 15.0%
!!! ATTTAGTTAATTTTATGGTT+GGG - chr3.3:77585394-77585413 MS.gene06598:intron 15.0%
!!! CTTTCTACTTTTTTTTTTTA+AGG + chr3.3:77584544-77584563 None:intergenic 15.0%
!!! GTTTTTTTTAGAGAATTTTT+TGG - chr3.3:77585416-77585435 MS.gene06598:intron 15.0%
!!! TACTACTTTAATTTTTCTAA+TGG - chr3.3:77587858-77587877 MS.gene06598:CDS 15.0%
!!! TATTTAGTTAATTTTATGGT+TGG - chr3.3:77585393-77585412 MS.gene06598:intron 15.0%
!!! TCATTAAAGACATTTTTTTA+AGG + chr3.3:77583899-77583918 None:intergenic 15.0%
!!! TTGATTTATAGTTTTATACA+TGG - chr3.3:77585546-77585565 MS.gene06598:intron 15.0%
!!! TTTTTAACATTAATTATAGG+GGG + chr3.3:77583677-77583696 None:intergenic 15.0%
!!! TTTTTTTTTGCTTACAATTT+AGG + chr3.3:77584385-77584404 None:intergenic 15.0%
!! AAAATTAATACCCTTAATAG+TGG + chr3.3:77587299-77587318 None:intergenic 20.0%
!! AAATTAATACCCTTAATAGT+GGG + chr3.3:77587298-77587317 None:intergenic 20.0%
!! ACTTATTTATGTGTTAAACA+TGG + chr3.3:77583975-77583994 None:intergenic 20.0%
!! ATAATAAGTAAGTCTATTGA+AGG - chr3.3:77583504-77583523 MS.gene06598:intron 20.0%
!! ATTAAAACATAAGAACTTGA+TGG - chr3.3:77584427-77584446 MS.gene06598:intron 20.0%
!! ATTAACAAAATGCACAATTA+GGG - chr3.3:77583576-77583595 MS.gene06598:intron 20.0%
!! CACAATAACTCTATTTATAT+AGG - chr3.3:77583439-77583458 MS.gene06598:intron 20.0%
!! CTAAAAATACTCACAAATAT+TGG + chr3.3:77584789-77584808 None:intergenic 20.0%
!! GACAATTTATAATATATGCA+AGG - chr3.3:77586298-77586317 MS.gene06598:intron 20.0%
!! GGAAAAAAAATAAAACTAAC+TGG + chr3.3:77584317-77584336 None:intergenic 20.0%
!! GTATACTATAATCCATTATT+TGG + chr3.3:77586836-77586855 None:intergenic 20.0%
!! TAAACTTAAGAAAAAATACC+TGG + chr3.3:77587358-77587377 None:intergenic 20.0%
!! TAAGTTAATTAACTTTGTTG+TGG - chr3.3:77586612-77586631 MS.gene06598:intron 20.0%
!! TATTAAGAAAACACAATCAA+TGG - chr3.3:77585262-77585281 MS.gene06598:intron 20.0%
!! TCTTATTCAAACATTAAACA+TGG + chr3.3:77586182-77586201 None:intergenic 20.0%
!!! AAAAACTACCATTTTTCATT+AGG + chr3.3:77586115-77586134 None:intergenic 20.0%
!!! AAAGATCTATCCATTTTTTT+AGG + chr3.3:77585908-77585927 None:intergenic 20.0%
!!! AAGTTTTTATTACTCCATAA+TGG - chr3.3:77585344-77585363 MS.gene06598:intron 20.0%
!!! AATATTTTTGTTACAATGTC+CGG + chr3.3:77586012-77586031 None:intergenic 20.0%
!!! ATAAGAGTATTTGAAGTAAA+AGG - chr3.3:77586196-77586215 MS.gene06598:intron 20.0%
!!! ATCATTTTATATGCATATAG+TGG - chr3.3:77587898-77587917 MS.gene06598:CDS 20.0%
!!! CATAAAAAGACTTTCTATTT+TGG - chr3.3:77586944-77586963 MS.gene06598:intron 20.0%
!!! TATTTGTTTTGATGCATTAA+TGG - chr3.3:77585096-77585115 MS.gene06598:intron 20.0%
!!! TTAGAATTTTGATACATTGA+AGG + chr3.3:77583352-77583371 None:intergenic 20.0%
!!! TTTAGAGAATTTTTTGGTAA+GGG - chr3.3:77585422-77585441 MS.gene06598:intron 20.0%
!!! TTTTAGAGAATTTTTTGGTA+AGG - chr3.3:77585421-77585440 MS.gene06598:intron 20.0%
! AAAATACTCACAAATATTGG+AGG + chr3.3:77584786-77584805 None:intergenic 25.0%
! AAAGGATTATTTAAGCGTTA+GGG + chr3.3:77583413-77583432 None:intergenic 25.0%
! ACAAAACAAACATAAGCATA+TGG - chr3.3:77584952-77584971 MS.gene06598:intron 25.0%
! ACAATAAGTAAGTACGTATA+AGG - chr3.3:77583472-77583491 MS.gene06598:CDS 25.0%
! ACGTAGTTGTCAATTTAAAT+CGG + chr3.3:77585055-77585074 None:intergenic 25.0%
! AGAGTTATTGTGAGTATTAA+AGG + chr3.3:77583431-77583450 None:intergenic 25.0%
! AGATTAAAATCCTAATCACA+TGG + chr3.3:77586702-77586721 None:intergenic 25.0%
! AGATTTGGATTTAGAAATAG+CGG - chr3.3:77585502-77585521 MS.gene06598:intron 25.0%
! GATTAACAAAATGCACAATT+AGG - chr3.3:77583575-77583594 MS.gene06598:intron 25.0%
! GGTAATAAAATGTATGAGAA+AGG + chr3.3:77585167-77585186 None:intergenic 25.0%
! TAAAGGATTATTTAAGCGTT+AGG + chr3.3:77583414-77583433 None:intergenic 25.0%
! TATCATTAAAGAACATGTCT+AGG + chr3.3:77583872-77583891 None:intergenic 25.0%
! TATTTGGTTAAGAATGAAGA+TGG - chr3.3:77583119-77583138 MS.gene06598:intron 25.0%
! TCAAAATATCCCACTATTAA+GGG - chr3.3:77587286-77587305 MS.gene06598:intron 25.0%
! TCGTCTTAGAATTAGAATTT+GGG + chr3.3:77583797-77583816 None:intergenic 25.0%
! TTAGAAATGCAATGAAAGAA+AGG - chr3.3:77587803-77587822 MS.gene06598:CDS 25.0%
! TTATAAGTGATAGATAGTTC+TGG - chr3.3:77583732-77583751 MS.gene06598:CDS 25.0%
! TTATGTTAGCATAAAGAAGA+AGG + chr3.3:77587590-77587609 None:intergenic 25.0%
! TTATTTATTTCATACACCAC+TGG + chr3.3:77586725-77586744 None:intergenic 25.0%
! TTCATATTGCTATAGGAATT+TGG + chr3.3:77585735-77585754 None:intergenic 25.0%
! TTGAAATTTCGATACATTGA+GGG - chr3.3:77583605-77583624 MS.gene06598:intron 25.0%
! TTTATAATATATGCAAGGTC+CGG - chr3.3:77586303-77586322 MS.gene06598:intron 25.0%
! TTTGTCAAAATACTCAAAAG+TGG + chr3.3:77584135-77584154 None:intergenic 25.0%
!! AAACATTAGGAGTATACATT+AGG - chr3.3:77584573-77584592 MS.gene06598:intron 25.0%
!! AACTTTAAGAAAACTTGGTT+TGG - chr3.3:77585929-77585948 MS.gene06598:intron 25.0%
!! AAGAATTTTCTTCATTGTGA+TGG + chr3.3:77587185-77587204 None:intergenic 25.0%
!! ATGAAATGTTTTCATTTGCA+CGG - chr3.3:77585293-77585312 MS.gene06598:intron 25.0%
!! ATGTCATCTTTTTCTTAAGA+AGG + chr3.3:77586927-77586946 None:intergenic 25.0%
!! CTTTGAACTTTAAGAAAACT+TGG - chr3.3:77585924-77585943 MS.gene06598:intron 25.0%
!! GAAGTGTATAATTAGTTTCT+TGG - chr3.3:77585128-77585147 MS.gene06598:intron 25.0%
!! TAACATTTGATGTTTTGTGT+AGG - chr3.3:77587458-77587477 MS.gene06598:intron 25.0%
!! TAATGGGGTAATAATCATTT+TGG - chr3.3:77583294-77583313 MS.gene06598:intron 25.0%
!! TAGAATTTGTTTAATCACAC+CGG - chr3.3:77585990-77586009 MS.gene06598:intron 25.0%
!! TTGAGCTTTAACAAACAAAT+TGG + chr3.3:77585781-77585800 None:intergenic 25.0%
!! TTTAACAAGGTTTTCAACAA+GGG - chr3.3:77587142-77587161 MS.gene06598:intron 25.0%
!! TTTGAAATTTCGATACATTG+AGG - chr3.3:77583604-77583623 MS.gene06598:intron 25.0%
!!! AAGAGCTGATTTTAAAATCA+TGG + chr3.3:77582880-77582899 None:intergenic 25.0%
!!! AGAGCTGATTTTAAAATCAT+GGG + chr3.3:77582879-77582898 None:intergenic 25.0%
!!! CAAGAGAGATTTTTTTTTGA+GGG + chr3.3:77586880-77586899 None:intergenic 25.0%
!!! GAAATAATCACTCACTTTTA+AGG + chr3.3:77586455-77586474 None:intergenic 25.0%
!!! GTATTTTTAGAATATGTGTG+AGG - chr3.3:77584799-77584818 MS.gene06598:intron 25.0%
!!! TCAAGAGAGATTTTTTTTTG+AGG + chr3.3:77586881-77586900 None:intergenic 25.0%
AATAAGTGACCAAAGATGAT+TGG - chr3.3:77584081-77584100 MS.gene06598:intron 30.0%
AATTGAAAACTAGCAGCATA+TGG - chr3.3:77583920-77583939 MS.gene06598:CDS 30.0%
AGAAATGTTGAATAGTGAGT+TGG + chr3.3:77585662-77585681 None:intergenic 30.0%
ATGTGAGAGTTAGCAAAAAA+AGG - chr3.3:77584268-77584287 MS.gene06598:intron 30.0%
ATTAAAGAACATGTCTAGGT+CGG + chr3.3:77583868-77583887 None:intergenic 30.0%
CTAACTGTTCATATTGCTAT+AGG + chr3.3:77585742-77585761 None:intergenic 30.0%
CTACATCAACAAGAGATTTA+AGG + chr3.3:77587231-77587250 None:intergenic 30.0%
CTCAAAATATCCCACTATTA+AGG - chr3.3:77587285-77587304 MS.gene06598:intron 30.0%
CTCAGATAAGCCTAAAAAAA+TGG - chr3.3:77585895-77585914 MS.gene06598:intron 30.0%
CTCGTCTTAGAATTAGAATT+TGG + chr3.3:77583798-77583817 None:intergenic 30.0%
CTTAAATCTCTTGTTGATGT+AGG - chr3.3:77587229-77587248 MS.gene06598:intron 30.0%
GAAAAAATACCTGGATAAGA+TGG + chr3.3:77587349-77587368 None:intergenic 30.0%
GAATATAGTGTCGTAAGATT+TGG - chr3.3:77585487-77585506 MS.gene06598:intron 30.0%
GATATCTTAACCATGTGATT+AGG - chr3.3:77586689-77586708 MS.gene06598:intron 30.0%
TAACTTACTTGAATAACCGT+CGG + chr3.3:77584350-77584369 None:intergenic 30.0%
TGCATTTCTAAATCTAGTGA+CGG + chr3.3:77587794-77587813 None:intergenic 30.0%
TTAGAAATCATTGCTAAAGC+TGG - chr3.3:77582912-77582931 MS.gene06598:CDS 30.0%
TTATAATATATGCAAGGTCC+GGG - chr3.3:77586304-77586323 MS.gene06598:intron 30.0%
TTGAAAACCTTGTTAAACCT+TGG + chr3.3:77587139-77587158 None:intergenic 30.0%
TTTCTTCGAAAGAACCATTA+TGG + chr3.3:77585361-77585380 None:intergenic 30.0%
! ATACATTTTATTACCCTGCA+GGG - chr3.3:77585172-77585191 MS.gene06598:intron 30.0%
! GATTTAGAAATAGCGGAAAT+GGG - chr3.3:77585509-77585528 MS.gene06598:intron 30.0%
! GCTAATTTTATGCAAACAAG+AGG + chr3.3:77587758-77587777 None:intergenic 30.0%
! GTTAAAGCTCAAGACTATTT+TGG - chr3.3:77585789-77585808 MS.gene06598:intron 30.0%
! GTTTAACAAGGTTTTCAACA+AGG - chr3.3:77587141-77587160 MS.gene06598:intron 30.0%
! TCCATTATTTGGGTTAACTT+CGG + chr3.3:77586825-77586844 None:intergenic 30.0%
! TGAAATGTTTTCATTTGCAC+GGG - chr3.3:77585294-77585313 MS.gene06598:intron 30.0%
! TTAACAAGGTTTTCAACAAG+GGG - chr3.3:77587143-77587162 MS.gene06598:intron 30.0%
!! ATGCATAACACAGTTGTTTT+AGG - chr3.3:77587695-77587714 MS.gene06598:intron 30.0%
!! ATGTGTTGAAAGCATTACAA+TGG + chr3.3:77588172-77588191 None:intergenic 30.0%
!! ATTAGGATTTTAATCTCCAG+TGG - chr3.3:77586706-77586725 MS.gene06598:intron 30.0%
!! ATTTTTGAAGAACTGCTATG+AGG - chr3.3:77587956-77587975 MS.gene06598:CDS 30.0%
!! CAAATTCTAATTCTAAGACG+AGG - chr3.3:77583796-77583815 MS.gene06598:CDS 30.0%
!! GTTCTAGTTTACATTGTTAG+AGG - chr3.3:77586153-77586172 MS.gene06598:intron 30.0%
!!! ATATATATTTTGGTGGTGAC+CGG + chr3.3:77586339-77586358 None:intergenic 30.0%
!!! GACTATTTTGACTAACAAAG+TGG + chr3.3:77583391-77583410 None:intergenic 30.0%
AAAATTCTTGAGACCTACAC+AGG - chr3.3:77587196-77587215 MS.gene06598:intron 35.0%
AAATCTCTTGTTGATGTAGG+TGG - chr3.3:77587232-77587251 MS.gene06598:intron 35.0%
AACAGATCCAAGGTTTAACA+AGG - chr3.3:77587129-77587148 MS.gene06598:intron 35.0%
ACAACCTAACCAATCATCTT+TGG + chr3.3:77584093-77584112 None:intergenic 35.0%
ACCTAAGATAGAGAACATGT+CGG - chr3.3:77587626-77587645 MS.gene06598:intron 35.0%
ACTAACAAAGTGGACAATCA+GGG + chr3.3:77583381-77583400 None:intergenic 35.0%
AGACAATGGAAAAGTGATTG+TGG - chr3.3:77587986-77588005 MS.gene06598:CDS 35.0%
ATAAAAACAGCATCAGCCTT+TGG + chr3.3:77587521-77587540 None:intergenic 35.0%
ATCTGTTCCATGGTATTCAA+AGG + chr3.3:77587116-77587135 None:intergenic 35.0%
ATGTTCTCTATCTTAGGTGT+CGG + chr3.3:77587624-77587643 None:intergenic 35.0%
ATTCCATTCAACAAGGCTTA+TGG - chr3.3:77587082-77587101 MS.gene06598:intron 35.0%
CAGAGTAAAAAACAGAGCTT+AGG + chr3.3:77583216-77583235 None:intergenic 35.0%
CATCATGGAGTTTCTTAAGA+AGG - chr3.3:77588193-77588212 MS.gene06598:CDS 35.0%
CATGAGATTAAGAGCAGAAA+TGG + chr3.3:77583150-77583169 None:intergenic 35.0%
CATGTTTGTCAGTATTCCAA+AGG - chr3.3:77587502-77587521 MS.gene06598:intron 35.0%
CTTTATGTAAGCATGATCGT+GGG - chr3.3:77585022-77585041 MS.gene06598:intron 35.0%
GAGAACACAAAAAGAGTTTG+AGG - chr3.3:77588109-77588128 MS.gene06598:CDS 35.0%
TAAAAGATGCAGTCCTTGAT+GGG - chr3.3:77587056-77587075 MS.gene06598:intron 35.0%
TAACTCTCACATATTGTCGT+GGG + chr3.3:77584260-77584279 None:intergenic 35.0%
TACTCACAAATATTGGAGGA+TGG + chr3.3:77584782-77584801 None:intergenic 35.0%
TAGGAATTTGGAAGCTTTAC+AGG + chr3.3:77585723-77585742 None:intergenic 35.0%
TATAATATATGCAAGGTCCG+GGG - chr3.3:77586305-77586324 MS.gene06598:intron 35.0%
TCACATTGATGTGATCATGT+TGG - chr3.3:77588064-77588083 MS.gene06598:CDS 35.0%
TCTAGGTCGGATTAAACATT+TGG + chr3.3:77583855-77583874 None:intergenic 35.0%
TGCTCTTAATCTCATGAATC+AGG - chr3.3:77583154-77583173 MS.gene06598:intron 35.0%
TGCTTCTTCATCTGATATGT+GGG + chr3.3:77582817-77582836 None:intergenic 35.0%
TGCTTTCAACACATACATCA+TGG - chr3.3:77588178-77588197 MS.gene06598:CDS 35.0%
TGGAAGCTTTACAGGAATAT+TGG + chr3.3:77585715-77585734 None:intergenic 35.0%
TGTTGAGTAACATACGCATA+CGG - chr3.3:77584868-77584887 MS.gene06598:intron 35.0%
TTGCTTCTTCATCTGATATG+TGG + chr3.3:77582818-77582837 None:intergenic 35.0%
TTGTCTTTCATTCATGCCAT+AGG + chr3.3:77586666-77586685 None:intergenic 35.0%
! AATGTTGAATAGTGAGTTGG+TGG + chr3.3:77585659-77585678 None:intergenic 35.0%
! ACATTATGATGATGACCTAG+AGG - chr3.3:77585614-77585633 MS.gene06598:intron 35.0%
! CATACATTTTATTACCCTGC+AGG - chr3.3:77585171-77585190 MS.gene06598:intron 35.0%
! CATTATGATGATGACCTAGA+GGG - chr3.3:77585615-77585634 MS.gene06598:intron 35.0%
! GGATTTAGAAATAGCGGAAA+TGG - chr3.3:77585508-77585527 MS.gene06598:intron 35.0%
! TACATTTTATTACCCTGCAG+GGG - chr3.3:77585173-77585192 MS.gene06598:intron 35.0%
! TGCTTACAATTTAGGACGAA+AGG + chr3.3:77584377-77584396 None:intergenic 35.0%
!! AATATTGGTTCACACTCCAT+TGG + chr3.3:77585700-77585719 None:intergenic 35.0%
!! ACAATCACTTTTCCATTGTC+TGG + chr3.3:77587987-77588006 None:intergenic 35.0%
!! ATTCCATAAGCCTTGTTGAA+TGG + chr3.3:77587088-77587107 None:intergenic 35.0%
!! TACAATGGACTTTGAAACCT+TGG + chr3.3:77588157-77588176 None:intergenic 35.0%
!! TATAGTGGATTTGTCATGAC+TGG - chr3.3:77587913-77587932 MS.gene06598:CDS 35.0%
!!! TATATATTTTGGTGGTGACC+GGG + chr3.3:77586338-77586357 None:intergenic 35.0%
AATACCATGGAACAGATCCA+AGG - chr3.3:77587119-77587138 MS.gene06598:intron 40.0%
AGAATGTGTGTGCAATTGGA+AGG + chr3.3:77586984-77587003 None:intergenic 40.0%
AGAGAGAATGTGTGTGCAAT+TGG + chr3.3:77586988-77587007 None:intergenic 40.0%
AGCTGAGAAGCAATTTCAAC+AGG + chr3.3:77582957-77582976 None:intergenic 40.0%
ATAAAGTCCTCATGGAAAGC+TGG - chr3.3:77583177-77583196 MS.gene06598:intron 40.0%
ATGACAGCCTTTGAATACCA+TGG - chr3.3:77587106-77587125 MS.gene06598:intron 40.0%
CAACTGTGTTATGCATAGCA+CGG + chr3.3:77587691-77587710 None:intergenic 40.0%
CCTAAGATAGAGAACATGTC+GGG - chr3.3:77587627-77587646 MS.gene06598:intron 40.0%
CCTACAATGAGTAAGGACTA+AGG + chr3.3:77587029-77587048 None:intergenic 40.0%
CCTTAGTCCTTACTCATTGT+AGG - chr3.3:77587026-77587045 MS.gene06598:intron 40.0%
CTAAAAGATGCAGTCCTTGA+TGG - chr3.3:77587055-77587074 MS.gene06598:intron 40.0%
CTAACTCTCACATATTGTCG+TGG + chr3.3:77584261-77584280 None:intergenic 40.0%
GAATCAGGATAAAGTCCTCA+TGG - chr3.3:77583169-77583188 MS.gene06598:intron 40.0%
GACTAACAAAGTGGACAATC+AGG + chr3.3:77583382-77583401 None:intergenic 40.0%
GCCGAAGTTAACCCAAATAA+TGG - chr3.3:77586821-77586840 MS.gene06598:intron 40.0%
GCTTTATGTAAGCATGATCG+TGG - chr3.3:77585021-77585040 MS.gene06598:intron 40.0%
GGAAAGGTTCAGAGACTTTA+TGG - chr3.3:77583077-77583096 MS.gene06598:intron 40.0%
GGCTACTGTTGCTAAGTATT+TGG - chr3.3:77583103-77583122 MS.gene06598:intron 40.0%
GGTTCAGAGACTTTATGGTT+TGG - chr3.3:77583082-77583101 MS.gene06598:intron 40.0%
TAAACCTTGGATCTGTTCCA+TGG + chr3.3:77587126-77587145 None:intergenic 40.0%
TCAGTTCGTACTCAACAAGA+TGG - chr3.3:77583056-77583075 MS.gene06598:CDS 40.0%
TCGTACTCAACAAGATGGAA+AGG - chr3.3:77583061-77583080 MS.gene06598:CDS 40.0%
TCTTCATCTGATATGTGGGT+TGG + chr3.3:77582813-77582832 None:intergenic 40.0%
TGAAATACCAGCTTTCCATG+AGG + chr3.3:77583187-77583206 None:intergenic 40.0%
! AATGTGAACCACACCTTTTG+TGG + chr3.3:77588051-77588070 None:intergenic 40.0%
! ACGAGGTTAGAGTCATCTTT+TGG - chr3.3:77583813-77583832 MS.gene06598:CDS 40.0%
! ATGGAGCATCTTCAATGACA+TGG + chr3.3:77587330-77587349 None:intergenic 40.0%
! CATCAAGGACTGCATCTTTT+AGG + chr3.3:77587057-77587076 None:intergenic 40.0%
! GCATCTTGAGTGATTAGTCA+TGG - chr3.3:77586783-77586802 MS.gene06598:intron 40.0%
! GCTTTTGACGTTAGTGTTTG+TGG + chr3.3:77585583-77585602 None:intergenic 40.0%
! GTGACCAAAGATGATTGGTT+AGG - chr3.3:77584086-77584105 MS.gene06598:intron 40.0%
! TGCTCTGTTCTCTGTTTTGT+TGG - chr3.3:77583245-77583264 MS.gene06598:intron 40.0%
! TGGAGCATCTTCAATGACAT+GGG + chr3.3:77587329-77587348 None:intergenic 40.0%
! TTTTCCTTCTCTCTTTCCGA+CGG - chr3.3:77584331-77584350 MS.gene06598:intron 40.0%
!! ATCATGTTGGCTCATAATCC+AGG - chr3.3:77588077-77588096 MS.gene06598:CDS 40.0%
!!! ATATATTTTGGTGGTGACCG+GGG + chr3.3:77586337-77586356 None:intergenic 40.0%
!!! GGCTGATGCTGTTTTTATGA+AGG - chr3.3:77587523-77587542 MS.gene06598:intron 40.0%
AACATTCGGTCCAACATGAC+GGG + chr3.3:77583002-77583021 None:intergenic 45.0%
AAGCCAAGAGACGCAACATT+CGG + chr3.3:77583016-77583035 None:intergenic 45.0%
AAGGCCTTCAAAACCTGTGT+AGG + chr3.3:77587212-77587231 None:intergenic 45.0%
ACAGGTGAAATTTGAGCACC+AGG + chr3.3:77582939-77582958 None:intergenic 45.0%
ATAACCGTCGGAAAGAGAGA+AGG + chr3.3:77584338-77584357 None:intergenic 45.0%
ATCATTGCTAAAGCTGGACC+TGG - chr3.3:77582918-77582937 MS.gene06598:CDS 45.0%
CAACATTCGGTCCAACATGA+CGG + chr3.3:77583003-77583022 None:intergenic 45.0%
CATACCAACTGAGTTAAGCG+AGG + chr3.3:77586278-77586297 None:intergenic 45.0%
CCAGATCATTGTGTTAGCGT+AGG + chr3.3:77587567-77587586 None:intergenic 45.0%
CCCGACATGTTCTCTATCTT+AGG + chr3.3:77587630-77587649 None:intergenic 45.0%
CCTACGCTAACACAATGATC+TGG - chr3.3:77587564-77587583 MS.gene06598:intron 45.0%
GAAGATGCTCCATCTTATCC+AGG - chr3.3:77587337-77587356 MS.gene06598:intron 45.0%
GAGTACGAACTGAACAAGTG+AGG + chr3.3:77583049-77583068 None:intergenic 45.0%
GAGTTTGAGGATCTTGCCAA+AGG - chr3.3:77588122-77588141 MS.gene06598:CDS 45.0%
GGGTTGGGCCTAATGAAAAA+TGG - chr3.3:77586104-77586123 MS.gene06598:intron 45.0%
GGTGGTACCTACAATGAGTA+AGG + chr3.3:77587036-77587055 None:intergenic 45.0%
TAAGATTTCCAACCCCTGCA+GGG + chr3.3:77585188-77585207 None:intergenic 45.0%
TCAAAAATGAGGGTCCCTCT+AGG + chr3.3:77585632-77585651 None:intergenic 45.0%
TCTCTTGTTGATGTAGGTGG+TGG - chr3.3:77587235-77587254 MS.gene06598:intron 45.0%
TGACTATTCGTTCCTCGTTC+AGG - chr3.3:77583635-77583654 MS.gene06598:intron 45.0%
TGGTGGCCACTCAAAAATGA+GGG + chr3.3:77585642-77585661 None:intergenic 45.0%
TGTGTAGGAGTTGAGCATGT+TGG - chr3.3:77587473-77587492 MS.gene06598:intron 45.0%
TTAAGATTTCCAACCCCTGC+AGG + chr3.3:77585189-77585208 None:intergenic 45.0%
TTGTCCTCGCTTAACTCAGT+TGG - chr3.3:77586271-77586290 MS.gene06598:intron 45.0%
! AGTCACTTTAGTCCTGAACG+AGG + chr3.3:77583650-77583669 None:intergenic 45.0%
! ATTGGTTCACACTCCATTGG+CGG + chr3.3:77585697-77585716 None:intergenic 45.0%
! CAAGGACTGCATCTTTTAGG+TGG + chr3.3:77587054-77587073 None:intergenic 45.0%
! CGAGCTTATCTCAGTTGGTA+AGG - chr3.3:77584900-77584919 MS.gene06598:intron 45.0%
! CTCGCTTAACTCAGTTGGTA+TGG - chr3.3:77586276-77586295 MS.gene06598:intron 45.0%
! GGAGCATCTTCAATGACATG+GGG + chr3.3:77587328-77587347 None:intergenic 45.0%
! TGAAGCACTTGCTAGTTGCA+TGG + chr3.3:77582850-77582869 None:intergenic 45.0%
! TTGGTGGCCACTCAAAAATG+AGG + chr3.3:77585643-77585662 None:intergenic 45.0%
! TTTTATTACCCTGCAGGGGT+TGG - chr3.3:77585177-77585196 MS.gene06598:intron 45.0%
!! ATGTTGGCTCATAATCCAGG+TGG - chr3.3:77588080-77588099 MS.gene06598:CDS 45.0%
!! GAGACCTACACAGGTTTTGA+AGG - chr3.3:77587205-77587224 MS.gene06598:intron 45.0%
!! GGGTGTCATTGTCAACATGT+TGG - chr3.3:77587647-77587666 MS.gene06598:intron 45.0%
!! TGTTGGCTCATAATCCAGGT+GGG - chr3.3:77588081-77588100 MS.gene06598:CDS 45.0%
!!! ATATAGTATTAATTAATTTT+GGG - chr3.3:77585871-77585890 MS.gene06598:intron 5.0%
!!! GTTTTTTTATTTTATATTTA+AGG + chr3.3:77584234-77584253 None:intergenic 5.0%
ACCTTGGAATCCAGCACCTT+TGG + chr3.3:77588141-77588160 None:intergenic 50.0%
AGCGGAAATGGGAGAGTAAG+AGG - chr3.3:77585520-77585539 MS.gene06598:intron 50.0%
GATTCAAGCCTGGCCACAAA+AGG - chr3.3:77588035-77588054 MS.gene06598:CDS 50.0%
GGCAGAATGCATACTTCCAG+TGG - chr3.3:77588007-77588026 MS.gene06598:CDS 50.0%
GTAGGAGTTGAGCATGTTGG+TGG - chr3.3:77587476-77587495 MS.gene06598:intron 50.0%
TGCATTTCACCTACCGCCAA+TGG - chr3.3:77585681-77585700 MS.gene06598:intron 50.0%
TGTGTTCTCTCTTTCCCACC+TGG + chr3.3:77588098-77588117 None:intergenic 50.0%
TTGCTAGTTGCATGGCGAAG+AGG + chr3.3:77582842-77582861 None:intergenic 50.0%
TTTGTGGCCAGGCTTGAATC+TGG + chr3.3:77588035-77588054 None:intergenic 50.0%
! AGTGTCGTGTTGATCGACGA+GGG - chr3.3:77586084-77586103 MS.gene06598:intron 50.0%
! GTTGATGTAGGTGGTGGTAC+TGG - chr3.3:77587241-77587260 MS.gene06598:intron 50.0%
! TAGTGTCGTGTTGATCGACG+AGG - chr3.3:77586083-77586102 MS.gene06598:intron 50.0%
!! GAGGGACCCTCATTTTTGAG+TGG - chr3.3:77585633-77585652 MS.gene06598:intron 50.0%
!! GGTGCATCAGGGTTAGTTGT+TGG + chr3.3:77582981-77583000 None:intergenic 50.0%
!! TATGAGGCACTGCCAGACAA+TGG - chr3.3:77587972-77587991 MS.gene06598:CDS 50.0%
AAGCCTGGCCACAAAAGGTG+TGG - chr3.3:77588040-77588059 MS.gene06598:CDS 55.0%
AAGGTCCGGGGTTTAAACCC+CGG - chr3.3:77586317-77586336 MS.gene06598:intron 55.0%
AGTGGCTCCAGATTCAAGCC+TGG - chr3.3:77588025-77588044 MS.gene06598:CDS 55.0%
CCAACTGAGATAAGCTCGCG+AGG + chr3.3:77584898-77584917 None:intergenic 55.0%
CCTCGCGAGCTTATCTCAGT+TGG - chr3.3:77584895-77584914 MS.gene06598:intron 55.0%
GGACCGAATGTTGCGTCTCT+TGG - chr3.3:77583010-77583029 MS.gene06598:CDS 55.0%
GTTCACACTCCATTGGCGGT+AGG + chr3.3:77585693-77585712 None:intergenic 55.0%
! AGGCTTGAATCTGGAGCCAC+TGG + chr3.3:77588026-77588045 None:intergenic 55.0%
! CGTGTTGATCGACGAGGGTT+GGG - chr3.3:77586089-77586108 MS.gene06598:intron 55.0%
! GAACCACACCTTTTGTGGCC+AGG + chr3.3:77588046-77588065 None:intergenic 55.0%
! GAGGATCTTGCCAAAGGTGC+TGG - chr3.3:77588128-77588147 MS.gene06598:CDS 55.0%
! TCGTGTTGATCGACGAGGGT+TGG - chr3.3:77586088-77586107 MS.gene06598:intron 55.0%
!! CCAACATGACGGGTGCATCA+GGG + chr3.3:77582992-77583011 None:intergenic 55.0%
!! GCCAAAGGTGCTGGATTCCA+AGG - chr3.3:77588137-77588156 MS.gene06598:CDS 55.0%
!! TCCAACATGACGGGTGCATC+AGG + chr3.3:77582993-77583012 None:intergenic 55.0%
CCCTGATGCACCCGTCATGT+TGG - chr3.3:77582989-77583008 MS.gene06598:CDS 60.0%
GGTGACCGGGGTTTAAACCC+CGG + chr3.3:77586325-77586344 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 77582780 77588220 77582780 ID=MS.gene06598
chr3.3 mRNA 77582780 77588220 77582780 ID=MS.gene06598.t1;Parent=MS.gene06598
chr3.3 exon 77587802 77588220 77587802 ID=MS.gene06598.t1.exon1;Parent=MS.gene06598.t1
chr3.3 CDS 77587802 77588220 77587802 ID=cds.MS.gene06598.t1;Parent=MS.gene06598.t1
chr3.3 exon 77583642 77583952 77583642 ID=MS.gene06598.t1.exon2;Parent=MS.gene06598.t1
chr3.3 CDS 77583642 77583952 77583642 ID=cds.MS.gene06598.t1;Parent=MS.gene06598.t1
chr3.3 exon 77583456 77583520 77583456 ID=MS.gene06598.t1.exon3;Parent=MS.gene06598.t1
chr3.3 CDS 77583456 77583520 77583456 ID=cds.MS.gene06598.t1;Parent=MS.gene06598.t1
chr3.3 exon 77582780 77583082 77582780 ID=MS.gene06598.t1.exon4;Parent=MS.gene06598.t1
chr3.3 CDS 77582780 77583082 77582780 ID=cds.MS.gene06598.t1;Parent=MS.gene06598.t1
Gene Sequence

>MS.gene06598

ATGGGTTCAACAGGTGAAACTCAAATAACACCAACCCACATATCAGATGAAGAAGCAAACCTCTTCGCCATGCAACTAGCAAGTGCTTCAGTTCTTCCCATGATTTTAAAATCAGCTCTTGAACTTGATCTCTTAGAAATCATTGCTAAAGCTGGACCTGGTGCTCAAATTTCACCTGTTGAAATTGCTTCTCAGCTTCCAACAACTAACCCTGATGCACCCGTCATGTTGGACCGAATGTTGCGTCTCTTGGCTTGTTACAATATCCTCACTTGTTCAGTTCGTACTCAACAAGATGGAAAGGTTCAGAGACTTTATGGTTTGGCTACTGTTGCTAAGTATTTGGTTAAGAATGAAGATGGTGTATCCATTTCTGCTCTTAATCTCATGAATCAGGATAAAGTCCTCATGGAAAGCTGGTATTTCACTATTTCCTAAGCTCTGTTTTTTACTCTGTTTTTATTTTGCTCTGTTCTCTGTTTTGTTGGTACGAAGAACAACATATAGATATAATTAATGGGGTAATAATCATTTTGGTCTCTGAATGTGTAGCAAGTAGTTATATTAGTCCTTCAATGTATCAAAATTCTAAAATAATCCCTGATTGTCCACTTTGTTAGTCAAAATAGTCCCTAACGCTTAAATAATCCTTTAATACTCACAATAACTCTATTTATATAGGGACTAAAATGACAATAAGTAAGTACGTATAAGGACTAATATGATAATAAGTAAGTCTATTGAAGGACTAATATGACAACATTAACGAAATATTTTAATATCAATGACTATTTTGATTAACAAAATGCACAATTAGGGATTATTTTGAAATTTCGATACATTGAGGGACTATTATGACTATTCGTTCCTCGTTCAGGACTAAAGTGACTATTTCCCCCTATAATTAATGTTAAAAATCTAAAATTGGATGTGATATATTCTGAAAATGTGTTTATAAGTGATAGATAGTTCTGGCTTACTAATCAATTTTGTATGAAGTTGAGTTAGATTCAACCCAAATTCTAATTCTAAGACGAGGTTAGAGTCATCTTTTGGATCATTAAGACATGTTCCAAATGTTTAATCCGACCTAGACATGTTCTTTAATGATAATTTCCTTAAAAAAATGTCTTTAATGATAATTGAAAACTAGCAGCATATGGAATTATTATTGAATCAAATTATGTGTACACCATGTTTAACACATAAATAAGTTTTCTCAAAAAAAAAAAAAACACATAAATATGTGTACACCATGTTTAACACATAAATAAGTTTTCTCAAAAAAAAAAAAACACATAAATAAGTGACCAAAGATGATTGGTTAGGTTGTTAAGACTGTGATTCATACTCCACTTTTGAGTATTTTGACAAATGTTCTTTAACTTTAAGACATATTGCTTGTCCAAAAAAAAAAAACTTTTAAGACATATTCTTAACTTTAAGATACACCTTAAATATAAAATAAAAAAACACACCCACGACAATATGTGAGAGTTAGCAAAAAAAGGAATTAGAATTTGTATTCAATATTCCAGTTAGTTTTATTTTTTTTCCTTCTCTCTTTCCGACGGTTATTCAAGTAAGTTATACTCCTTTCGTCCTAAATTGTAAGCAAAAAAAAAAAAAATCACACTTGTTAAGAAAATTAAAACATAAGAACTTGATGGAGTATAATTTTTTGTGTTTTCTTTAGAATAAGTTTTATAGAAAGATGTAAAAACAATTTTATTAAACAAGTAACAAGAAAAGTAGAAAGTTCCTTAAAAAAAAAAAGTAGAAAGTAACAAAATAAACATTAGGAGTATACATTAGGCATAAATGCAGAAATGTAAAATTCATATATATCTTGTAAAATAGGTATAAAGTAACAAGAAAATCCGTAAAAAAAAAAATAAAAAAAAAAAAGTAACGAGACAAGTTTCAGATCATACGCATTACGCATATTTGTTTACGAGAAATAATTTTTTTACATTAAAATTTTGATATCGATCAAATACCATCCTCCAATATTTGTGAGTATTTTTAGAATATGTGTGAGGTGTAAAAGATGAAAATTTAGAAAGAGATAGAGATAAATATATTACGTGTTGAGTAACATACGCATACGGTGATCCTCGCGAGCTTATCTCAGTTGGTAAGGAAAATGCATGATATATCATGTAATATCACACAAAACAAACATAAGCATATGGTGTTTTATATATATATAACGTTGTATGTTTACATGCACATACATAAGCTTTATGTAAGCATGATCGTGGGTCAGTAACCGATTTAAATTGACAACTACGTAGATATCTCATAGTATGCGAGTATTTGTTTTGATGCATTAATGGTTTTAAAAAGAAGTGTATAATTAGTTTCTTGGAATGTAGTCTACTCCTTTCTCATACATTTTATTACCCTGCAGGGGTTGGAAATCTTAAATTTTGTATAGAATATACATTATTTTAAAATGTAACGTTTGAGACTCGATGAATATTAAGAAAACACAATCAATGGATTAAAAAATGAAATGTTTTCATTTGCACGGGAAGTTAACGTGTAAGTTAATTATTCATAAGTTTTTATTACTCCATAATGGTTCTTTCGAAGAAAACTAAGAATGTTTATTTAGTTAATTTTATGGTTGGGTTTTTTTTAGAGAATTTTTTGGTAAGGGATTGTTAAGCAATAAACTCGTGTCCATTATTAATTGACTTATGAATATAGTGTCGTAAGATTTGGATTTAGAAATAGCGGAAATGGGAGAGTAAGAGGAAATTGATTTATAGTTTTATACATGGACGATGATTGTCCACAAACACTAACGTCAAAAGCTTCAAATTATGACATTATGATGATGACCTAGAGGGACCCTCATTTTTGAGTGGCCACCAACTCACTATTCAACATTTCTGCATTTCACCTACCGCCAATGGAGTGTGAACCAATATTCCTGTAAAGCTTCCAAATTCCTATAGCAATATGAACAGTTAGACAATTTCGTAAAAGTCCAATTTGTTTGTTAAAGCTCAAGACTATTTTGGTTTTCTCTACATGTCAACATTACTACATTAAAAGAAATCGAGTAGTTGAACGAACTTGCATATAGTATTAATTAATTTTGGGTCTCAGATAAGCCTAAAAAAATGGATAGATCTTTGAACTTTAAGAAAACTTGGTTTGGATGTTACATATCAACCAAAAAAGTTAAAAAAATATGTATAGAATTTGTTTAATCACACCGGACATTGTAACAAAAATATTGCATTTGACGCATCAACATTAACACAGTTGTTTCGTAAATTGATAATAACATAGTGTCGTGTTGATCGACGAGGGTTGGGCCTAATGAAAAATGGTAGTTTTTCACAATGTTACAAACTAAGTTCTAGTTTACATTGTTAGAGGTGACCATGTTTAATGTTTGAATAAGAGTATTTGAAGTAAAAGGAATCTATGAAAAAAAACAAAAAAAATCTCTTGTTGTAAATATATAATTCAACTTGTCCTCGCTTAACTCAGTTGGTATGGACAATTTATAATATATGCAAGGTCCGGGGTTTAAACCCCGGTCACCACCAAAATATATATATATATATATATATATATATATATATATATATAATTCAACTTAATCAATATGATTTAGTGAATAGAATACATTTTTTAATATGGAAAAATGCTCCTTAAAAGTGAGTGATTATTTCGAGTTAATTCACTTTTTGACATAAAGAGCTTATACAATTATTTTCTATTAAAAGTAACAAAATATCATCGTGTCAAAATTCATTAGATTATTATATCAATTCATTTTTCCTCAAAAAAATAATATCATTATGTCTGTTAAGTTAATTAACTTTGTTGTGGTTCTATACACATAATTTTTTATCAATATCCTATGGCATGAATGAAAGACAACTAGATATCTTAACCATGTGATTAGGATTTTAATCTCCAGTGGTGTATGAAATAAATAATATATGTTTGGCGATGTCAACATTTTAAATGAATCTCAGCATCTTGAGTGATTAGTCATGGACTTCTGATGAGATTGCCGAAGTTAACCCAAATAATGGATTATAGTATACAAGTAATTAAATTGTATTCATCCCTCAAAAAAAAATCTCTCTTGATGTATGCTTAGATGACATAAAAACCTTCTTAAGAAAAAGATGACATAAAAAGACTTTCTATTTTGGAAAGACATCAACATCCTTCCAATTGCACACACATTCTCTCTATTATGAGAAATAGTAATCCTTAGTCCTTACTCATTGTAGGTACCACCTAAAAGATGCAGTCCTTGATGGGGGCATTCCATTCAACAAGGCTTATGGAATGACAGCCTTTGAATACCATGGAACAGATCCAAGGTTTAACAAGGTTTTCAACAAGGGGATGTCTGATCACTCTACCATCACAATGAAGAAAATTCTTGAGACCTACACAGGTTTTGAAGGCCTTAAATCTCTTGTTGATGTAGGTGGTGGTACTGGAGCTGTAATTAACACGATTGTCTCAAAATATCCCACTATTAAGGGTATTAATTTTGATTTACCCCATGTCATTGAAGATGCTCCATCTTATCCAGGTATTTTTTCTTAAGTTTAAATATCATTGTCTTAAACAATTAGTATTATGCTTTACATGCATATTTGAACAATATTACTTACTTCAATTTATATAGAATTAACATTTGATGTTTTGTGTAGGAGTTGAGCATGTTGGTGGAGACATGTTTGTCAGTATTCCAAAGGCTGATGCTGTTTTTATGAAGGTGCATTTTATACATCTTACCTACGCTAACACAATGATCTGGCCTTCTTCTTTATGCTAACATAATCTCTGTAGCACCGACACCTAAGATAGAGAACATGTCGGGTGTCATTGTCAACATGTTGGTAGTGTCTGTGTTTATATCCGTGCTATGCATAACACAGTTGTTTTAGGCTTTAGCCTTTACATTTAATATACTTCAAATCATATTCCTCTTGTTTGCATAAAATTAGCGAACAGAAGAAATCCGTCACTAGATTTAGAAATGCAATGAAAGAAAGGTTTATTTTATATTTTTCTTAACTAAAATTTGTTACTACTTTAATTTTTCTAATGGTATATGCTAATTATGATATCATTTTATATGCATATAGTGGATTTGTCATGACTGGAGTGATGAGCACTGCTTGAAATTTTTGAAGAACTGCTATGAGGCACTGCCAGACAATGGAAAAGTGATTGTGGCAGAATGCATACTTCCAGTGGCTCCAGATTCAAGCCTGGCCACAAAAGGTGTGGTTCACATTGATGTGATCATGTTGGCTCATAATCCAGGTGGGAAAGAGAGAACACAAAAAGAGTTTGAGGATCTTGCCAAAGGTGCTGGATTCCAAGGTTTCAAAGTCCATTGTAATGCTTTCAACACATACATCATGGAGTTTCTTAAGAAGGTTTAA
Protein sequence

>MS.gene06598.t1

MGSTGETQITPTHISDEEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPVEIASQLPTTNPDAPVMLDRMLRLLACYNILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTYIMEFLKKV