AlfalfaGEDB | MS.gene066056

M. sativa cultivar XinJiangDaYe / MS.gene066056

KEGG: K12819
GO: -
PFAM: PF11708.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066056.t1	XP_024630835.1	87.4	381	37	2	4	378	2	377	1.80E-179	638.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066056.t1	Q9SHY8	63.6	382	132	2	1	378	1	379	3.5e-128	459.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066056.t1	A0A072VND7	88.2	373	31	2	6	378	13	372	1.3e-176	628.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene056252	MS.gene066056	0.802212	6.24E-49	-1.69E-46
MS.gene058010	MS.gene066056	0.805946	1.04E-49	-1.69E-46
MS.gene058979	MS.gene066056	0.812233	4.70E-51	-1.69E-46
MS.gene060011	MS.gene066056	0.803557	3.29E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066056.t1	MTR_1g085510	87.533	377	34	2	2	378	9	372	0.0	637
MS.gene066056.t1	MTR_7g096940	78.421	380	77	2	1	378	1	377	0.0	580
MS.gene066056.t1	MTR_1g076120	53.600	125	55	1	58	182	8	129	6.94e-35	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066056.t1	AT1G65660	70.157	382	107	2	1	378	1	379	0.0	528
MS.gene066056.t1	AT4G37120	67.801	382	116	3	1	378	1	379	7.20e-176	500
MS.gene066056.t1	AT3G45950	62.740	365	125	3	1	364	1	355	1.32e-158	451

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Find 91 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCAATCCCCATATTCCT+CGG	0.547828	1.2:+58575155	MS.gene066056:CDS
AACATACGCCCGAGTCGTTA+AGG	0.375976	1.2:+58576427	MS.gene066056:CDS
AACTCTAGAGCTCCATGGTG+AGG	0.611056	1.2:-58575378	None:intergenic
AAGCGTGTGCGAACAACAGA+TGG	0.640632	1.2:+58576626	MS.gene066056:CDS
AAGCTGAAGAAATTGGAGAA+GGG	0.536301	1.2:+58576497	MS.gene066056:CDS
ACAACAGATGGTGGGAGTAC+AGG	0.514826	1.2:+58576638	MS.gene066056:CDS
ACATGTTGCCAAGGAATGCA+TGG	0.582269	1.2:+58576274	MS.gene066056:CDS
ACGAGGCAAAGGTTGATGAA+AGG	0.625177	1.2:+58576576	MS.gene066056:CDS
ACTTCCAAGAGAACTTCTGC+TGG	0.508278	1.2:+58577249	MS.gene066056:CDS
AGAAAACGGGACAGATGGGA+GGG	0.627956	1.2:+58576392	MS.gene066056:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAATAGAAACTTCCCA+AGG	-	chr1.2:58574444-58574463	None:intergenic	30.0%
AAACAATAGAAACTTCCCAA+GGG	-	chr1.2:58574443-58574462	None:intergenic	30.0%
AAACAATATGGTAACACTTG+TGG	+	chr1.2:58574831-58574850	MS.gene066056:intron	30.0%
AAACAGAATTAGGTCATGTT+TGG	-	chr1.2:58574796-58574815	None:intergenic	30.0%
AATATATGCAGAGACAAACA+AGG	-	chr1.2:58576177-58576196	None:intergenic	30.0%
AATCTGATTAAATAAGAGGG+AGG	-	chr1.2:58575239-58575258	None:intergenic	30.0%
ACAAGTAACGAAACAGAATT+AGG	-	chr1.2:58574806-58574825	None:intergenic	30.0%
AGAAAACGAGACTTAGTATT+TGG	+	chr1.2:58575532-58575551	MS.gene066056:intron	30.0%
AGGAATTAAACAACTATGCT+CGG	+	chr1.2:58577071-58577090	MS.gene066056:CDS	30.0%
ATCTGATTAAATAAGAGGGA+GGG	-	chr1.2:58575238-58575257	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	58574310	58577324	58574310	ID=MS.gene066056
chr1.2	mRNA	58574310	58577324	58574310	ID=MS.gene066056.t1;Parent=MS.gene066056
chr1.2	exon	58574310	58574325	58574310	ID=MS.gene066056.t1.exon1;Parent=MS.gene066056.t1
chr1.2	CDS	58574310	58574325	58574310	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2	exon	58575056	58575219	58575056	ID=MS.gene066056.t1.exon2;Parent=MS.gene066056.t1
chr1.2	CDS	58575056	58575219	58575056	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2	exon	58575335	58575447	58575335	ID=MS.gene066056.t1.exon3;Parent=MS.gene066056.t1
chr1.2	CDS	58575335	58575447	58575335	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2	exon	58576259	58576669	58576259	ID=MS.gene066056.t1.exon4;Parent=MS.gene066056.t1
chr1.2	CDS	58576259	58576669	58576259	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2	exon	58576780	58576915	58576780	ID=MS.gene066056.t1.exon5;Parent=MS.gene066056.t1
chr1.2	CDS	58576780	58576915	58576780	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2	exon	58577028	58577324	58577028	ID=MS.gene066056.t1.exon6;Parent=MS.gene066056.t1
chr1.2	CDS	58577028	58577324	58577028	ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1

Gene Sequence

>MS.gene066056

ATGGCAACAGCTTCAGGTACATCTCTTTTTTCCCCTATTCAACTATCCTTTTTTAGAGCAAATTAGTTTCTTGCTGCACAAGTAACAACTTATTCATCATGCAACTTTTGGATCCGATTGAACTTTTTTCCCCTTGGGAAGTTTCTATTGTTTTTTCAGTTATATCCTGATGAAATCACACATAGACTTCTATTCAAAGCTATTAATCAATACTTAGGGTTGTTTGATTTGACTTATTTGATTTTATTTACTAACGTAAGATTTGTGAGACTGTTTGGGAGAACTTATTAAAACAATTTATGCCTTTTTTCGTAAGTTTTTTTTAGCTTATCTTAATAAGTTATCCAAAAATAGCTTATGAAAAATAACTTATGATAAAAACAACTTATATAGCATATACAAAAACAATTTAATTTTATCTTTTGCTATAGAAAGAACTTATGTAAGCTTACTTATGCTATAAACTGCAAACAAGTTGTTTATCCAAACATGACCTAATTCTGTTTCGTTACTTGTGATGCAAACAATATGGTAACACTTGTGGTATCCGGTGAACATGAAGTTGCTTTTCCCCCTTAGGGTTTCATGGATTTAAAACTCTCTGCATACTTGTTTAGCGAGTTGCTTTTGCCTCTTTCTAATTTTAACTTTAATCTGGTTATGTACTTCTCAATTCACCTTATGAGTTATGCCTTAGTTAGACGGTTTGTGCATGTTTATTAAATTTTGACGGTGGTGAATTGCAGCGGCATTCAAGTCCAGGGAGGATCATCAAAAACAGATTCAGCTTGAGGAAGCCCGTAAATCTGGGCTTGCTCCTGCTGAGCTTGATGAAGATGGAAAGGAAATCAATCCCCATATTCCTCGGTTTATTTCATCTCCACCTTGGTATCTTAAGGCCGCGAGACCTGTAAGTTTTTCCCTACCCTCCCTCTTATTTAATCAGATTTTTAGATTCACATAGAATTGTCATATTTGATATAAAAACTACTAACATATTTATCTGTTTTTTCCTTCCAATGTAGAGTTTGAAACATCAAAGGAAACAGATATCTCATGCCAATAATACCTCACCATGGAGCTCTAGAGTTACTAAAACTTTTCAGGCCAGCAAGTATAGGAAAGGTGCATGTGAGAAGTAAGTTATCTCTTTCACTGTTTCAAAATGCAAGTTTTTTGTGCCTCCAAATGTGATGGACGCTTCTTGTCTATTAACTTGATAAGAAAACGAGACTTAGTATTTGGTAACATCTGCCTCGGACTGTGTTTGTGCTTGTCTCAATAGTTGTTGAACTCTCTTTTATGAAAATTGTGTCGCCTTGTTTGTAAACAATGTCAAACTAATACTCCCTCCGTCCCGTTTTATCTGAGCCAGTTTGATTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTATTGTATTGAGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGACTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGAGTCAGATATTCCAGGACGGAGGGAGTACAAGAGAACATGCACAAAATCTTTTAACTAAATTCTTCTAGTTAGTTTACAAGCTTGGATTAATACATGGTTTTTGCATCAAAATGACCTTTTCGCTGATTTTGTTGGATATTTGAATTGAGTTGCATCTACTTTGCACTGCTCATTAGGTTTATAAGTATTAGAGCTATTTTAAATTATGTTCATGGCCAAGATAAAAAAAAAAAGGCAGAATATGATAAATTCTTTTCAACTTGAGTTGTCTAGAATTCCATGTGTCTACCTATACTATCAAGTATGATAACCTTGTTTGTCTCTGCATATATTTAGATCGCCATTCTCTCTTACAAGTTTAGGTTAGTTCTTAAATATTAATCTCGTTTTTATAGCTGTGGAGCTATGACACATGTTGCCAAGGAATGCATGGAAAGAGCAAGAAAGGTAGGAGCAAAGTATACAAACAAGAGCATTGCTGCTGATGAAAAAAAAGAAACTTCTGAAACTTGTGAGCTTGACTATGAGAGAAAACGGGACAGATGGGAGGGTTATGATGTATCAACATACGCCCGAGTCGTTAAGGTGTATGAAGCCAGAGACCACACTCGAATGAAGTTCTTGAAGGAACAGAAGCTGAAGAAATTGGAGAAGGGGGATCAAAATGATGAGGGTGCTGCAATTGATGAGTCTGAAGACGATTTAAGGATAGACGAGGCAAAGGTTGATGAAAGGAAACAAATCGACTTCACAAAGGTTGAGAAGCGTGTGCGAACAACAGATGGTGGGAGTACAGGAACTGTGAGGTAATTTTCATGTTGCTGTCATTTTAAAATTGCATGGCAGAGTTGATTGGTAATTATCACTTCTAATACTTTTCGTACGATGATTGCAACTGAAATATCTTAATCTTCAGGAACCTACGTATTCGAGAGGATACTGCAAAATATCTTCTCAATCTTGATGTCAATTCTGCACATTATGACCCCAAGACTAGGTCCATGCGCGAAGATCCTCTTCCAGAGTCAAATCCAAACGAAAAGTTTTACATGGTAACTTGGTCTCAAAGATTAAATTTTTTAGGGAACTTGCTGATTTGCTTTATATTATTGCTTCTTGCATGGTTATCTTGTATTTGGGTTAAAATTTGTTTTTGTTCTGTAGGGTGATAACAATTGTAGAAATAGTGGTCAAGCTTTGGAGTTCAAGGAATTAAACAACTATGCTCGGGAAGCATTTGACAAGGGACAAGATGTTCATATGCTAGCAGGTCCTTCCCAAGTTGAATTGCTCCATAAGAATTTCAAGGTCATGAAGGAGAAATCGGCGTCTCAATGGAACAAAACTATCATTGAGAAGTATAACTATGTAGCTTTGAACGACCCACTTCCAAGAGAACTTCTGCTGGGTCAGAGTGAGAGGCAAATTCTGTATGATCGTGCTGGTAGAATTATTAAGTGA

Protein sequence

>MS.gene066056.t1

MATASAAFKSREDHQKQIQLEEARKSGLAPAELDEDGKEINPHIPRFISSPPWYLKAARPSLKHQRKQISHANNTSPWSSRVTKTFQASKYRKGACENCGAMTHVAKECMERARKVGAKYTNKSIAADEKKETSETCELDYERKRDRWEGYDVSTYARVVKVYEARDHTRMKFLKEQKLKKLEKGDQNDEGAAIDESEDDLRIDEAKVDERKQIDFTKVEKRVRTTDGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPESNPNEKFYMGDNNCRNSGQALEFKELNNYAREAFDKGQDVHMLAGPSQVELLHKNFKVMKEKSASQWNKTIIEKYNYVALNDPLPRELLLGQSERQILYDRAGRIIK