AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066056

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066056.t1 MTR_1g085510 87.533 377 34 2 2 378 9 372 0.0 637
MS.gene066056.t1 MTR_7g096940 78.421 380 77 2 1 378 1 377 0.0 580
MS.gene066056.t1 MTR_1g076120 53.600 125 55 1 58 182 8 129 6.94e-35 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066056.t1 AT1G65660 70.157 382 107 2 1 378 1 379 0.0 528
MS.gene066056.t1 AT4G37120 67.801 382 116 3 1 378 1 379 7.20e-176 500
MS.gene066056.t1 AT3G45950 62.740 365 125 3 1 364 1 355 1.32e-158 451

Find 91 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGTCTGAAGACGATTTA+AGG 0.156539 1.2:+58576549 MS.gene066056:CDS
TCATGACCTTGAAATTCTTA+TGG 0.220836 1.2:-58577156 None:intergenic
ATGAAATAAACCGAGGAATA+TGG 0.231934 1.2:-58575165 None:intergenic
GGAACAGAAGCTGAAGAAAT+TGG 0.233123 1.2:+58576490 MS.gene066056:CDS
CTTGAGGAAGCCCGTAAATC+TGG 0.305196 1.2:+58575097 MS.gene066056:CDS
CAAACCATGGCAACAGCTTC+AGG 0.310836 1.2:+58574304 None:intergenic
GCTCCATGGTGAGGTATTAT+TGG 0.315560 1.2:-58575369 None:intergenic
TGCTCTTTCCATGCATTCCT+TGG 0.319041 1.2:-58576282 None:intergenic
TGCACCTTTCCTATACTTGC+TGG 0.340921 1.2:-58575417 None:intergenic
CAGGAGCAAGCCCAGATTTA+CGG 0.341604 1.2:-58575108 None:intergenic
ATCTCCACCTTGGTATCTTA+AGG 0.354820 1.2:+58575186 MS.gene066056:CDS
TCGCGCATGGACCTAGTCTT+GGG 0.357123 1.2:-58576850 None:intergenic
AACATACGCCCGAGTCGTTA+AGG 0.375976 1.2:+58576427 MS.gene066056:CDS
AGGAGCAAGCCCAGATTTAC+GGG 0.382157 1.2:-58575107 None:intergenic
TAGAAATAGTGGTCAAGCTT+TGG 0.387015 1.2:+58577042 MS.gene066056:CDS
TGAAATAAACCGAGGAATAT+GGG 0.393605 1.2:-58575164 None:intergenic
TTCGCGCATGGACCTAGTCT+TGG 0.409287 1.2:-58576851 None:intergenic
CCATCTTCATCAAGCTCAGC+AGG 0.421841 1.2:-58575127 None:intergenic
AGCTTGACTATGAGAGAAAA+CGG 0.425836 1.2:+58576378 MS.gene066056:CDS
CTTCATTCGAGTGTGGTCTC+TGG 0.432405 1.2:-58576459 None:intergenic
TGGTCAAGCTTTGGAGTTCA+AGG 0.440232 1.2:+58577051 MS.gene066056:CDS
CAAGGTCATGAAGGAGAAAT+CGG 0.442259 1.2:+58577168 MS.gene066056:CDS
ATTGCTCCATAAGAATTTCA+AGG 0.449157 1.2:+58577150 MS.gene066056:CDS
TGACCCAGCAGAAGTTCTCT+TGG 0.454140 1.2:-58577253 None:intergenic
CACTCGAATGAAGTTCTTGA+AGG 0.458871 1.2:+58576469 MS.gene066056:CDS
TCTTATGGAGCAATTCAACT+TGG 0.464712 1.2:-58577141 None:intergenic
CCTGCTGAGCTTGATGAAGA+TGG 0.465404 1.2:+58575127 MS.gene066056:CDS
AGGAATTAAACAACTATGCT+CGG 0.470452 1.2:+58577071 MS.gene066056:CDS
GATAACAATTGTAGAAATAG+TGG 0.483850 1.2:+58577031 MS.gene066056:CDS
AGCAGAAGTTCTCTTGGAAG+TGG 0.498501 1.2:-58577247 None:intergenic
TTGCAGCGGCATTCAAGTCC+AGG 0.498699 1.2:+58575050 MS.gene066056:intron
TTTGGATTTGACTCTGGAAG+AGG 0.499780 1.2:-58576877 None:intergenic
ACTTCCAAGAGAACTTCTGC+TGG 0.508278 1.2:+58577249 MS.gene066056:CDS
AGGAGAAATCGGCGTCTCAA+TGG 0.509016 1.2:+58577179 MS.gene066056:CDS
ATGAGAGAAAACGGGACAGA+TGG 0.510877 1.2:+58576387 MS.gene066056:CDS
ATGCATGGAAAGAGCAAGAA+AGG 0.511296 1.2:+58576289 MS.gene066056:CDS
ACAACAGATGGTGGGAGTAC+AGG 0.514826 1.2:+58576638 MS.gene066056:CDS
CTTCATACACCTTAACGACT+CGG 0.518122 1.2:-58576436 None:intergenic
TTCTGCTGGGTCAGAGTGAG+AGG 0.531412 1.2:+58577263 MS.gene066056:CDS
GGTTTATTTCATCTCCACCT+TGG 0.532475 1.2:+58575176 MS.gene066056:CDS
TTGAGGAAGCCCGTAAATCT+GGG 0.534474 1.2:+58575098 MS.gene066056:CDS
AAGCTGAAGAAATTGGAGAA+GGG 0.536301 1.2:+58576497 MS.gene066056:CDS
CAAGATGTTCATATGCTAGC+AGG 0.540090 1.2:+58577112 MS.gene066056:CDS
GGAATTAAACAACTATGCTC+GGG 0.544188 1.2:+58577072 MS.gene066056:CDS
AAATCAATCCCCATATTCCT+CGG 0.547828 1.2:+58575155 MS.gene066056:CDS
TAAGAATTTCAAGGTCATGA+AGG 0.554860 1.2:+58577159 MS.gene066056:CDS
CTTATGGAGCAATTCAACTT+GGG 0.559327 1.2:-58577140 None:intergenic
CAAATTCTGTATGATCGTGC+TGG 0.563378 1.2:+58577286 MS.gene066056:CDS
CACATTATGACCCCAAGACT+AGG 0.564086 1.2:+58576839 MS.gene066056:CDS
GCTTGACTATGAGAGAAAAC+GGG 0.565076 1.2:+58576379 MS.gene066056:CDS
TGAGAGAAAACGGGACAGAT+GGG 0.569931 1.2:+58576388 MS.gene066056:CDS
TGGAAGAGGATCTTCGCGCA+TGG 0.573219 1.2:-58576863 None:intergenic
AGCTGAAGAAATTGGAGAAG+GGG 0.573732 1.2:+58576498 MS.gene066056:CDS
TTCATACACCTTAACGACTC+GGG 0.574557 1.2:-58576435 None:intergenic
TGGAGCAATTCAACTTGGGA+AGG 0.578212 1.2:-58577136 None:intergenic
ACATGTTGCCAAGGAATGCA+TGG 0.582269 1.2:+58576274 MS.gene066056:CDS
ATGGAAAGAGCAAGAAAGGT+AGG 0.583096 1.2:+58576293 MS.gene066056:CDS
TGTAGAGTTTGAAACATCAA+AGG 0.584746 1.2:+58575330 MS.gene066056:intron
CAGGCCAGCAAGTATAGGAA+AGG 0.586979 1.2:+58575413 MS.gene066056:CDS
GAAATAAACCGAGGAATATG+GGG 0.592440 1.2:-58575163 None:intergenic
TGAGCTTGATGAAGATGGAA+AGG 0.596681 1.2:+58575132 MS.gene066056:CDS
TTAGTAACTCTAGAGCTCCA+TGG 0.598277 1.2:-58575383 None:intergenic
GAAGCTGAAGAAATTGGAGA+AGG 0.599721 1.2:+58576496 MS.gene066056:CDS
CGCGCATGGACCTAGTCTTG+GGG 0.602374 1.2:-58576849 None:intergenic
CTTCCAAGAGAACTTCTGCT+GGG 0.607186 1.2:+58577250 MS.gene066056:CDS
AGCTATGACACATGTTGCCA+AGG 0.608413 1.2:+58576265 MS.gene066056:CDS
CGTGTGCGAACAACAGATGG+TGG 0.609242 1.2:+58576629 MS.gene066056:CDS
TCAAGAACTTCATTCGAGTG+TGG 0.609318 1.2:-58576466 None:intergenic
AACTCTAGAGCTCCATGGTG+AGG 0.611056 1.2:-58575378 None:intergenic
TTTAAGGATAGACGAGGCAA+AGG 0.611481 1.2:+58576565 MS.gene066056:CDS
GCAGAAGTTCTCTTGGAAGT+GGG 0.617938 1.2:-58577246 None:intergenic
GCTGAAGAAATTGGAGAAGG+GGG 0.623949 1.2:+58576499 MS.gene066056:CDS
ACGAGGCAAAGGTTGATGAA+AGG 0.625177 1.2:+58576576 MS.gene066056:CDS
TGCTCGGGAAGCATTTGACA+AGG 0.627113 1.2:+58577087 MS.gene066056:CDS
AGAAAACGGGACAGATGGGA+GGG 0.627956 1.2:+58576392 MS.gene066056:CDS
TGTACCTGAAGCTGTTGCCA+TGG 0.628281 1.2:-58574308 None:intergenic
GAGAAAACGGGACAGATGGG+AGG 0.630679 1.2:+58576391 MS.gene066056:CDS
TGCAGCGGCATTCAAGTCCA+GGG 0.630909 1.2:+58575051 MS.gene066056:intron
GTGTGCGAACAACAGATGGT+GGG 0.635474 1.2:+58576630 MS.gene066056:CDS
AAGCGTGTGCGAACAACAGA+TGG 0.640632 1.2:+58576626 MS.gene066056:CDS
CTCGCGGCCTTAAGATACCA+AGG 0.653666 1.2:-58575193 None:intergenic
CAGTATCCTCTCGAATACGT+AGG 0.658694 1.2:-58576783 None:intergenic
CAGGAACCTACGTATTCGAG+AGG 0.661686 1.2:+58576777 MS.gene066056:intron
GAAACAAATCGACTTCACAA+AGG 0.680379 1.2:+58576598 MS.gene066056:CDS
AGACGATTTAAGGATAGACG+AGG 0.696945 1.2:+58576559 MS.gene066056:CDS
ATGCCAATAATACCTCACCA+TGG 0.699306 1.2:+58575366 MS.gene066056:CDS
GCTCGGGAAGCATTTGACAA+GGG 0.729755 1.2:+58577088 MS.gene066056:CDS
GTGGGAGTACAGGAACTGTG+AGG 0.740528 1.2:+58576648 MS.gene066056:CDS
GGTGGAGATGAAATAAACCG+AGG 0.745353 1.2:-58575172 None:intergenic
AGCGGCATTCAAGTCCAGGG+AGG 0.751269 1.2:+58575054 MS.gene066056:intron
GCGGCCTTAAGATACCAAGG+TGG 0.793930 1.2:-58575190 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAAAAATGTATAAATAAA+GGG + chr1.2:58575705-58575724 MS.gene066056:intron 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + chr1.2:58575704-58575723 MS.gene066056:intron 10.0%
!! AAAAATCTGATTAAATAAGA+GGG - chr1.2:58575242-58575261 None:intergenic 15.0%
!! AATTAGAGTTATATTGTATT+GGG + chr1.2:58575773-58575792 MS.gene066056:intron 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + chr1.2:58575706-58575725 MS.gene066056:intron 15.0%
!! TAAAAAAAACTTACGAAAAA+AGG - chr1.2:58574615-58574634 None:intergenic 15.0%
!! TAAAAATCTGATTAAATAAG+AGG - chr1.2:58575243-58575262 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + chr1.2:58575772-58575791 MS.gene066056:intron 15.0%
!! TTAAAGTTAAAATTAGAAAG+AGG - chr1.2:58574943-58574962 None:intergenic 15.0%
!!! CTCAAAGATTAAATTTTTTA+GGG + chr1.2:58576926-58576945 MS.gene066056:intron 15.0%
!!! TATTTTTCATAAGCTATTTT+TGG - chr1.2:58574657-58574676 None:intergenic 15.0%
!!! TCTCAAAGATTAAATTTTTT+AGG + chr1.2:58576925-58576944 MS.gene066056:intron 15.0%
!!! TTCTAATTTTAACTTTAATC+TGG + chr1.2:58574945-58574964 MS.gene066056:intron 15.0%
!! AAAGCTATTAATCAATACTT+AGG + chr1.2:58574505-58574524 MS.gene066056:intron 20.0%
!! AAGCTATTAATCAATACTTA+GGG + chr1.2:58574506-58574525 MS.gene066056:intron 20.0%
!! TAAAAAAGGATAGTTGAATA+GGG - chr1.2:58574345-58574364 None:intergenic 20.0%
!!! AAAATTTGTTTTTGTTCTGT+AGG + chr1.2:58577006-58577025 MS.gene066056:intron 20.0%
!!! AAACTAATTTGCTCTAAAAA+AGG - chr1.2:58574359-58574378 None:intergenic 20.0%
!!! AAATTTGTTTTTGTTCTGTA+GGG + chr1.2:58577007-58577026 MS.gene066056:intron 20.0%
!!! GCATGTTTATTAAATTTTGA+CGG + chr1.2:58575020-58575039 MS.gene066056:intron 20.0%
!!! GCTATTTTAAATTATGTTCA+TGG + chr1.2:58576056-58576075 MS.gene066056:intron 20.0%
! AAAAAAGGATAGTTGAATAG+GGG - chr1.2:58574344-58574363 None:intergenic 25.0%
! ACTGAAATATCTTAATCTTC+AGG + chr1.2:58576758-58576777 MS.gene066056:intron 25.0%
! CTAAAAAAGGATAGTTGAAT+AGG - chr1.2:58574346-58574365 None:intergenic 25.0%
! GATAACAATTGTAGAAATAG+TGG + chr1.2:58577031-58577050 MS.gene066056:CDS 25.0%
! TGGCCAAGATAAAAAAAAAA+AGG + chr1.2:58576076-58576095 MS.gene066056:intron 25.0%
! TTATATTATTGCTTCTTGCA+TGG + chr1.2:58576965-58576984 MS.gene066056:intron 25.0%
! TTTGACATTGTTTACAAACA+AGG - chr1.2:58575630-58575649 None:intergenic 25.0%
!! AAAAGTTTTACATGGTAACT+TGG + chr1.2:58576902-58576921 MS.gene066056:intron 25.0%
!! GTTATCATACTTGATAGTAT+AGG - chr1.2:58576155-58576174 None:intergenic 25.0%
!! TAGAGTTACTAAAACTTTTC+AGG + chr1.2:58575394-58575413 MS.gene066056:CDS 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + chr1.2:58575819-58575838 MS.gene066056:intron 25.0%
!!! CTGCCTTTTTTTTTTTATCT+TGG - chr1.2:58576082-58576101 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + chr1.2:58575820-58575839 MS.gene066056:intron 25.0%
!!! TGTTTATTAAATTTTGACGG+TGG + chr1.2:58575023-58575042 MS.gene066056:intron 25.0%
AAAACAATAGAAACTTCCCA+AGG - chr1.2:58574444-58574463 None:intergenic 30.0%
AAACAATAGAAACTTCCCAA+GGG - chr1.2:58574443-58574462 None:intergenic 30.0%
AAACAATATGGTAACACTTG+TGG + chr1.2:58574831-58574850 MS.gene066056:intron 30.0%
AAACAGAATTAGGTCATGTT+TGG - chr1.2:58574796-58574815 None:intergenic 30.0%
AATATATGCAGAGACAAACA+AGG - chr1.2:58576177-58576196 None:intergenic 30.0%
AATCTGATTAAATAAGAGGG+AGG - chr1.2:58575239-58575258 None:intergenic 30.0%
ACAAGTAACGAAACAGAATT+AGG - chr1.2:58574806-58574825 None:intergenic 30.0%
AGAAAACGAGACTTAGTATT+TGG + chr1.2:58575532-58575551 MS.gene066056:intron 30.0%
AGGAATTAAACAACTATGCT+CGG + chr1.2:58577071-58577090 MS.gene066056:CDS 30.0%
ATCTGATTAAATAAGAGGGA+GGG - chr1.2:58575238-58575257 None:intergenic 30.0%
ATCTGTGTGAAAAATCAAAC+TGG - chr1.2:58575684-58575703 None:intergenic 30.0%
ATGAAATAAACCGAGGAATA+TGG - chr1.2:58575168-58575187 None:intergenic 30.0%
ATTGCTCCATAAGAATTTCA+AGG + chr1.2:58577150-58577169 MS.gene066056:CDS 30.0%
TAACTAAGGCATAACTCATA+AGG - chr1.2:58574990-58575009 None:intergenic 30.0%
TAAGAATTTCAAGGTCATGA+AGG + chr1.2:58577159-58577178 MS.gene066056:CDS 30.0%
TAAGATTTGTGAGACTGTTT+GGG + chr1.2:58574566-58574585 MS.gene066056:intron 30.0%
TACAAGCTTGGATTAATACA+TGG + chr1.2:58575938-58575957 MS.gene066056:intron 30.0%
TACTTGTGATGCAAACAATA+TGG + chr1.2:58574819-58574838 MS.gene066056:intron 30.0%
TCATGACCTTGAAATTCTTA+TGG - chr1.2:58577159-58577178 None:intergenic 30.0%
TGAAATAAACCGAGGAATAT+GGG - chr1.2:58575167-58575186 None:intergenic 30.0%
TGATGTTTCAAACTCTACAT+TGG - chr1.2:58575329-58575348 None:intergenic 30.0%
TGCATGGTTATCTTGTATTT+GGG + chr1.2:58576981-58577000 MS.gene066056:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + chr1.2:58575713-58575732 MS.gene066056:intron 30.0%
TTAAATCCATGAAACCCTAA+GGG - chr1.2:58574885-58574904 None:intergenic 30.0%
TTGCATGGTTATCTTGTATT+TGG + chr1.2:58576980-58576999 MS.gene066056:intron 30.0%
TTTAAATCCATGAAACCCTA+AGG - chr1.2:58574886-58574905 None:intergenic 30.0%
! ACCATGTAAAACTTTTCGTT+TGG - chr1.2:58576898-58576917 None:intergenic 30.0%
! CTTATTCATCATGCAACTTT+TGG + chr1.2:58574398-58574417 MS.gene066056:intron 30.0%
! TCCAAACGAAAAGTTTTACA+TGG + chr1.2:58576894-58576913 MS.gene066056:CDS 30.0%
! TGTAGAGTTTGAAACATCAA+AGG + chr1.2:58575330-58575349 MS.gene066056:intron 30.0%
! TTCTAGTTAGTTTACAAGCT+TGG + chr1.2:58575926-58575945 MS.gene066056:intron 30.0%
!! TAATCTCGTTTTTATAGCTG+TGG + chr1.2:58576242-58576261 MS.gene066056:intron 30.0%
!!! GCTGTCATTTTAAAATTGCA+TGG + chr1.2:58576684-58576703 MS.gene066056:intron 30.0%
AAAAGCAACTTCATGTTCAC+CGG - chr1.2:58574860-58574879 None:intergenic 35.0%
AAATCAATCCCCATATTCCT+CGG + chr1.2:58575155-58575174 MS.gene066056:CDS 35.0%
AACAATAGAAACTTCCCAAG+GGG - chr1.2:58574442-58574461 None:intergenic 35.0%
AAGCTGAAGAAATTGGAGAA+GGG + chr1.2:58576497-58576516 MS.gene066056:CDS 35.0%
AGCTTGACTATGAGAGAAAA+CGG + chr1.2:58576378-58576397 MS.gene066056:CDS 35.0%
AGTCTATGTGTGATTTCATC+AGG - chr1.2:58574478-58574497 None:intergenic 35.0%
ATCCAACAAAATCAGCGAAA+AGG - chr1.2:58575981-58576000 None:intergenic 35.0%
ATGAGTCTGAAGACGATTTA+AGG + chr1.2:58576549-58576568 MS.gene066056:CDS 35.0%
ATTAAATAAGAGGGAGGGTA+GGG - chr1.2:58575233-58575252 None:intergenic 35.0%
CAAGGGGAAAAAAGTTCAAT+CGG - chr1.2:58574426-58574445 None:intergenic 35.0%
CCATTCTCTCTTACAAGTTT+AGG + chr1.2:58576204-58576223 MS.gene066056:intron 35.0%
CCTAAACTTGTAAGAGAGAA+TGG - chr1.2:58576207-58576226 None:intergenic 35.0%
CTTATGGAGCAATTCAACTT+GGG - chr1.2:58577143-58577162 None:intergenic 35.0%
GAAAATGAGTCAGATATTCC+AGG + chr1.2:58575856-58575875 MS.gene066056:intron 35.0%
GAAATAAACCGAGGAATATG+GGG - chr1.2:58575166-58575185 None:intergenic 35.0%
GGAATTAAACAACTATGCTC+GGG + chr1.2:58577072-58577091 MS.gene066056:CDS 35.0%
GTAAGATTTGTGAGACTGTT+TGG + chr1.2:58574565-58574584 MS.gene066056:intron 35.0%
GTTTCAAACTCTACATTGGA+AGG - chr1.2:58575325-58575344 None:intergenic 35.0%
TAAATCCATGAAACCCTAAG+GGG - chr1.2:58574884-58574903 None:intergenic 35.0%
TAGAAATAGTGGTCAAGCTT+TGG + chr1.2:58577042-58577061 MS.gene066056:CDS 35.0%
TCAAAAACAGATTCAGCTTG+AGG + chr1.2:58575081-58575100 MS.gene066056:CDS 35.0%
TCTTATGGAGCAATTCAACT+TGG - chr1.2:58577144-58577163 None:intergenic 35.0%
TGAGTTATGCCTTAGTTAGA+CGG + chr1.2:58574992-58575011 MS.gene066056:intron 35.0%
TGATAGTATAGGTAGACACA+TGG - chr1.2:58576144-58576163 None:intergenic 35.0%
! GAAACAAATCGACTTCACAA+AGG + chr1.2:58576598-58576617 MS.gene066056:CDS 35.0%
! TCAAACTGGCTCAGATAAAA+CGG - chr1.2:58575670-58575689 None:intergenic 35.0%
! TTTTCGTTTGGATTTGACTC+TGG - chr1.2:58576886-58576905 None:intergenic 35.0%
!!! GATTGAACTTTTTTCCCCTT+GGG + chr1.2:58574425-58574444 MS.gene066056:intron 35.0%
AAATCCATGAAACCCTAAGG+GGG - chr1.2:58574883-58574902 None:intergenic 40.0%
AAGGGGGATCAAAATGATGA+GGG + chr1.2:58576515-58576534 MS.gene066056:CDS 40.0%
AGACGATTTAAGGATAGACG+AGG + chr1.2:58576559-58576578 MS.gene066056:CDS 40.0%
AGCTGAAGAAATTGGAGAAG+GGG + chr1.2:58576498-58576517 MS.gene066056:CDS 40.0%
ATCTCCACCTTGGTATCTTA+AGG + chr1.2:58575186-58575205 MS.gene066056:CDS 40.0%
ATGAGTCAGATATTCCAGGA+CGG + chr1.2:58575860-58575879 MS.gene066056:intron 40.0%
ATGCACAAACCGTCTAACTA+AGG - chr1.2:58575004-58575023 None:intergenic 40.0%
ATGCATGGAAAGAGCAAGAA+AGG + chr1.2:58576289-58576308 MS.gene066056:CDS 40.0%
ATGCCAATAATACCTCACCA+TGG + chr1.2:58575366-58575385 MS.gene066056:CDS 40.0%
ATGGAAAGAGCAAGAAAGGT+AGG + chr1.2:58576293-58576312 MS.gene066056:CDS 40.0%
ATGGTAACACTTGTGGTATC+CGG + chr1.2:58574838-58574857 MS.gene066056:intron 40.0%
CAAATTCTGTATGATCGTGC+TGG + chr1.2:58577286-58577305 MS.gene066056:CDS 40.0%
CAAGATGTTCATATGCTAGC+AGG + chr1.2:58577112-58577131 MS.gene066056:CDS 40.0%
CAAGGTCATGAAGGAGAAAT+CGG + chr1.2:58577168-58577187 MS.gene066056:CDS 40.0%
CACTCGAATGAAGTTCTTGA+AGG + chr1.2:58576469-58576488 MS.gene066056:CDS 40.0%
CTTCATACACCTTAACGACT+CGG - chr1.2:58576439-58576458 None:intergenic 40.0%
GAAGCTGAAGAAATTGGAGA+AGG + chr1.2:58576496-58576515 MS.gene066056:CDS 40.0%
GATTAAATAAGAGGGAGGGT+AGG - chr1.2:58575234-58575253 None:intergenic 40.0%
GCTTGACTATGAGAGAAAAC+GGG + chr1.2:58576379-58576398 MS.gene066056:CDS 40.0%
GGAACAGAAGCTGAAGAAAT+TGG + chr1.2:58576490-58576509 MS.gene066056:CDS 40.0%
GGTTTATTTCATCTCCACCT+TGG + chr1.2:58575176-58575195 MS.gene066056:CDS 40.0%
TCAAGAACTTCATTCGAGTG+TGG - chr1.2:58576469-58576488 None:intergenic 40.0%
TCTACTTTGCACTGCTCATT+AGG + chr1.2:58576018-58576037 MS.gene066056:intron 40.0%
TGAGCTTGATGAAGATGGAA+AGG + chr1.2:58575132-58575151 MS.gene066056:CDS 40.0%
TTCATACACCTTAACGACTC+GGG - chr1.2:58576438-58576457 None:intergenic 40.0%
TTTAAGGATAGACGAGGCAA+AGG + chr1.2:58576565-58576584 MS.gene066056:CDS 40.0%
! AATTGCATGGCAGAGTTGAT+TGG + chr1.2:58576697-58576716 MS.gene066056:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - chr1.2:58575669-58575688 None:intergenic 40.0%
! GTATTTGGTAACATCTGCCT+CGG + chr1.2:58575547-58575566 MS.gene066056:intron 40.0%
! TTTGGATTTGACTCTGGAAG+AGG - chr1.2:58576880-58576899 None:intergenic 40.0%
! TTTTGTGCCTCCAAATGTGA+TGG + chr1.2:58575484-58575503 MS.gene066056:intron 40.0%
!! TTAGTAACTCTAGAGCTCCA+TGG - chr1.2:58575386-58575405 None:intergenic 40.0%
!!! CGATTGAACTTTTTTCCCCT+TGG + chr1.2:58574424-58574443 MS.gene066056:intron 40.0%
!!! GACCTTTTCGCTGATTTTGT+TGG + chr1.2:58575976-58575995 MS.gene066056:intron 40.0%
ACATGTTGCCAAGGAATGCA+TGG + chr1.2:58576274-58576293 MS.gene066056:CDS 45.0%
ACTTCCAAGAGAACTTCTGC+TGG + chr1.2:58577249-58577268 MS.gene066056:CDS 45.0%
AGCAGAAGTTCTCTTGGAAG+TGG - chr1.2:58577250-58577269 None:intergenic 45.0%
AGCTATGACACATGTTGCCA+AGG + chr1.2:58576265-58576284 MS.gene066056:CDS 45.0%
ATGAGAGAAAACGGGACAGA+TGG + chr1.2:58576387-58576406 MS.gene066056:CDS 45.0%
CACATTATGACCCCAAGACT+AGG + chr1.2:58576839-58576858 MS.gene066056:CDS 45.0%
CAGTATCCTCTCGAATACGT+AGG - chr1.2:58576786-58576805 None:intergenic 45.0%
CTTCCAAGAGAACTTCTGCT+GGG + chr1.2:58577250-58577269 MS.gene066056:CDS 45.0%
GAAGGGGGATCAAAATGATG+AGG + chr1.2:58576514-58576533 MS.gene066056:CDS 45.0%
GAGGGTAGGGAAAAACTTAC+AGG - chr1.2:58575220-58575239 None:intergenic 45.0%
GCAGAAGTTCTCTTGGAAGT+GGG - chr1.2:58577249-58577268 None:intergenic 45.0%
GCTGAAGAAATTGGAGAAGG+GGG + chr1.2:58576499-58576518 MS.gene066056:CDS 45.0%
GGAAAAACTTACAGGTCTCG+CGG - chr1.2:58575212-58575231 None:intergenic 45.0%
GGTGGAGATGAAATAAACCG+AGG - chr1.2:58575175-58575194 None:intergenic 45.0%
TGAGAGAAAACGGGACAGAT+GGG + chr1.2:58576388-58576407 MS.gene066056:CDS 45.0%
TGCACCTTTCCTATACTTGC+TGG - chr1.2:58575420-58575439 None:intergenic 45.0%
TGCTCTTTCCATGCATTCCT+TGG - chr1.2:58576285-58576304 None:intergenic 45.0%
TGGAGCAATTCAACTTGGGA+AGG - chr1.2:58577139-58577158 None:intergenic 45.0%
TTGAGGAAGCCCGTAAATCT+GGG + chr1.2:58575098-58575117 MS.gene066056:CDS 45.0%
! GCTCCATGGTGAGGTATTAT+TGG - chr1.2:58575372-58575391 None:intergenic 45.0%
! TTTTCCCCCTTAGGGTTTCA+TGG + chr1.2:58574876-58574895 MS.gene066056:intron 45.0%
!! ACGAGGCAAAGGTTGATGAA+AGG + chr1.2:58576576-58576595 MS.gene066056:CDS 45.0%
!! CAAGAAGCGTCCATCACATT+TGG - chr1.2:58575497-58575516 None:intergenic 45.0%
!! CTTTTCAGGCCAGCAAGTAT+AGG + chr1.2:58575408-58575427 MS.gene066056:CDS 45.0%
!! TGGTCAAGCTTTGGAGTTCA+AGG + chr1.2:58577051-58577070 MS.gene066056:CDS 45.0%
!!! CTGTTTTTGATGATCCTCCC+TGG - chr1.2:58575071-58575090 None:intergenic 45.0%
!!! GAAGTTGCTTTTCCCCCTTA+GGG + chr1.2:58574868-58574887 MS.gene066056:intron 45.0%
!!! TGAAGTTGCTTTTCCCCCTT+AGG + chr1.2:58574867-58574886 MS.gene066056:intron 45.0%
AACATACGCCCGAGTCGTTA+AGG + chr1.2:58576427-58576446 MS.gene066056:CDS 50.0%
AAGCGTGTGCGAACAACAGA+TGG + chr1.2:58576626-58576645 MS.gene066056:CDS 50.0%
ACAAGCACAAACACAGTCCG+AGG - chr1.2:58575567-58575586 None:intergenic 50.0%
AGAAAACGGGACAGATGGGA+GGG + chr1.2:58576392-58576411 MS.gene066056:CDS 50.0%
AGGAGAAATCGGCGTCTCAA+TGG + chr1.2:58577179-58577198 MS.gene066056:CDS 50.0%
AGGAGCAAGCCCAGATTTAC+GGG - chr1.2:58575110-58575129 None:intergenic 50.0%
AGTCAGATATTCCAGGACGG+AGG + chr1.2:58575863-58575882 MS.gene066056:intron 50.0%
CAGGAACCTACGTATTCGAG+AGG + chr1.2:58576777-58576796 MS.gene066056:intron 50.0%
CAGGAGCAAGCCCAGATTTA+CGG - chr1.2:58575111-58575130 None:intergenic 50.0%
CAGGCCAGCAAGTATAGGAA+AGG + chr1.2:58575413-58575432 MS.gene066056:CDS 50.0%
CCATCTTCATCAAGCTCAGC+AGG - chr1.2:58575130-58575149 None:intergenic 50.0%
CCTGCTGAGCTTGATGAAGA+TGG + chr1.2:58575127-58575146 MS.gene066056:CDS 50.0%
CTCAGATAAAACGGGACGGA+GGG - chr1.2:58575661-58575680 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - chr1.2:58575665-58575684 None:intergenic 50.0%
CTTCATTCGAGTGTGGTCTC+TGG - chr1.2:58576462-58576481 None:intergenic 50.0%
CTTGAGGAAGCCCGTAAATC+TGG + chr1.2:58575097-58575116 MS.gene066056:CDS 50.0%
GTCAGATATTCCAGGACGGA+GGG + chr1.2:58575864-58575883 MS.gene066056:intron 50.0%
GTGTGCGAACAACAGATGGT+GGG + chr1.2:58576630-58576649 MS.gene066056:CDS 50.0%
TGACCCAGCAGAAGTTCTCT+TGG - chr1.2:58577256-58577275 None:intergenic 50.0%
TTGACGGTGGTGAATTGCAG+CGG + chr1.2:58575036-58575055 MS.gene066056:intron 50.0%
! GAAGCGTCCATCACATTTGG+AGG - chr1.2:58575494-58575513 None:intergenic 50.0%
!! AACTCTAGAGCTCCATGGTG+AGG - chr1.2:58575381-58575400 None:intergenic 50.0%
!! ACAACAGATGGTGGGAGTAC+AGG + chr1.2:58576638-58576657 MS.gene066056:CDS 50.0%
!! GCTCGGGAAGCATTTGACAA+GGG + chr1.2:58577088-58577107 MS.gene066056:CDS 50.0%
!! TGCTCGGGAAGCATTTGACA+AGG + chr1.2:58577087-58577106 MS.gene066056:CDS 50.0%
CGTGTGCGAACAACAGATGG+TGG + chr1.2:58576629-58576648 MS.gene066056:CDS 55.0%
CTCGCGGCCTTAAGATACCA+AGG - chr1.2:58575196-58575215 None:intergenic 55.0%
GAGAAAACGGGACAGATGGG+AGG + chr1.2:58576391-58576410 MS.gene066056:CDS 55.0%
GCGGCCTTAAGATACCAAGG+TGG - chr1.2:58575193-58575212 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - chr1.2:58575662-58575681 None:intergenic 55.0%
TGCAGCGGCATTCAAGTCCA+GGG + chr1.2:58575051-58575070 MS.gene066056:intron 55.0%
TGGAAGAGGATCTTCGCGCA+TGG - chr1.2:58576866-58576885 None:intergenic 55.0%
TTCGCGCATGGACCTAGTCT+TGG - chr1.2:58576854-58576873 None:intergenic 55.0%
TTCTGCTGGGTCAGAGTGAG+AGG + chr1.2:58577263-58577282 MS.gene066056:CDS 55.0%
TTGCAGCGGCATTCAAGTCC+AGG + chr1.2:58575050-58575069 MS.gene066056:intron 55.0%
! GTGGGAGTACAGGAACTGTG+AGG + chr1.2:58576648-58576667 MS.gene066056:CDS 55.0%
! TCGCGCATGGACCTAGTCTT+GGG - chr1.2:58576853-58576872 None:intergenic 55.0%
AGCGGCATTCAAGTCCAGGG+AGG + chr1.2:58575054-58575073 MS.gene066056:intron 60.0%
CTCTTGTACTCCCTCCGTCC+TGG - chr1.2:58575877-58575896 None:intergenic 60.0%
!! CGCGCATGGACCTAGTCTTG+GGG - chr1.2:58576852-58576871 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 58574310 58577324 58574310 ID=MS.gene066056
chr1.2 mRNA 58574310 58577324 58574310 ID=MS.gene066056.t1;Parent=MS.gene066056
chr1.2 exon 58574310 58574325 58574310 ID=MS.gene066056.t1.exon1;Parent=MS.gene066056.t1
chr1.2 CDS 58574310 58574325 58574310 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2 exon 58575056 58575219 58575056 ID=MS.gene066056.t1.exon2;Parent=MS.gene066056.t1
chr1.2 CDS 58575056 58575219 58575056 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2 exon 58575335 58575447 58575335 ID=MS.gene066056.t1.exon3;Parent=MS.gene066056.t1
chr1.2 CDS 58575335 58575447 58575335 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2 exon 58576259 58576669 58576259 ID=MS.gene066056.t1.exon4;Parent=MS.gene066056.t1
chr1.2 CDS 58576259 58576669 58576259 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2 exon 58576780 58576915 58576780 ID=MS.gene066056.t1.exon5;Parent=MS.gene066056.t1
chr1.2 CDS 58576780 58576915 58576780 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
chr1.2 exon 58577028 58577324 58577028 ID=MS.gene066056.t1.exon6;Parent=MS.gene066056.t1
chr1.2 CDS 58577028 58577324 58577028 ID=cds.MS.gene066056.t1;Parent=MS.gene066056.t1
Gene Sequence

>MS.gene066056

ATGGCAACAGCTTCAGGTACATCTCTTTTTTCCCCTATTCAACTATCCTTTTTTAGAGCAAATTAGTTTCTTGCTGCACAAGTAACAACTTATTCATCATGCAACTTTTGGATCCGATTGAACTTTTTTCCCCTTGGGAAGTTTCTATTGTTTTTTCAGTTATATCCTGATGAAATCACACATAGACTTCTATTCAAAGCTATTAATCAATACTTAGGGTTGTTTGATTTGACTTATTTGATTTTATTTACTAACGTAAGATTTGTGAGACTGTTTGGGAGAACTTATTAAAACAATTTATGCCTTTTTTCGTAAGTTTTTTTTAGCTTATCTTAATAAGTTATCCAAAAATAGCTTATGAAAAATAACTTATGATAAAAACAACTTATATAGCATATACAAAAACAATTTAATTTTATCTTTTGCTATAGAAAGAACTTATGTAAGCTTACTTATGCTATAAACTGCAAACAAGTTGTTTATCCAAACATGACCTAATTCTGTTTCGTTACTTGTGATGCAAACAATATGGTAACACTTGTGGTATCCGGTGAACATGAAGTTGCTTTTCCCCCTTAGGGTTTCATGGATTTAAAACTCTCTGCATACTTGTTTAGCGAGTTGCTTTTGCCTCTTTCTAATTTTAACTTTAATCTGGTTATGTACTTCTCAATTCACCTTATGAGTTATGCCTTAGTTAGACGGTTTGTGCATGTTTATTAAATTTTGACGGTGGTGAATTGCAGCGGCATTCAAGTCCAGGGAGGATCATCAAAAACAGATTCAGCTTGAGGAAGCCCGTAAATCTGGGCTTGCTCCTGCTGAGCTTGATGAAGATGGAAAGGAAATCAATCCCCATATTCCTCGGTTTATTTCATCTCCACCTTGGTATCTTAAGGCCGCGAGACCTGTAAGTTTTTCCCTACCCTCCCTCTTATTTAATCAGATTTTTAGATTCACATAGAATTGTCATATTTGATATAAAAACTACTAACATATTTATCTGTTTTTTCCTTCCAATGTAGAGTTTGAAACATCAAAGGAAACAGATATCTCATGCCAATAATACCTCACCATGGAGCTCTAGAGTTACTAAAACTTTTCAGGCCAGCAAGTATAGGAAAGGTGCATGTGAGAAGTAAGTTATCTCTTTCACTGTTTCAAAATGCAAGTTTTTTGTGCCTCCAAATGTGATGGACGCTTCTTGTCTATTAACTTGATAAGAAAACGAGACTTAGTATTTGGTAACATCTGCCTCGGACTGTGTTTGTGCTTGTCTCAATAGTTGTTGAACTCTCTTTTATGAAAATTGTGTCGCCTTGTTTGTAAACAATGTCAAACTAATACTCCCTCCGTCCCGTTTTATCTGAGCCAGTTTGATTTTTCACACAGATTAAGAAAAATGTATAAATAAAGGGGAAAGTGGAATATATTATTGTATTGAGAATGATGAAAGTAGTATTAATTAGAGTTATATTGTATTGGGAATGATGAAAGTTGTATTGAAAATTGAAATGACTCAGTTATTTTGGGACACTTTTTTTTAGAAAATGAGTCAGATATTCCAGGACGGAGGGAGTACAAGAGAACATGCACAAAATCTTTTAACTAAATTCTTCTAGTTAGTTTACAAGCTTGGATTAATACATGGTTTTTGCATCAAAATGACCTTTTCGCTGATTTTGTTGGATATTTGAATTGAGTTGCATCTACTTTGCACTGCTCATTAGGTTTATAAGTATTAGAGCTATTTTAAATTATGTTCATGGCCAAGATAAAAAAAAAAAGGCAGAATATGATAAATTCTTTTCAACTTGAGTTGTCTAGAATTCCATGTGTCTACCTATACTATCAAGTATGATAACCTTGTTTGTCTCTGCATATATTTAGATCGCCATTCTCTCTTACAAGTTTAGGTTAGTTCTTAAATATTAATCTCGTTTTTATAGCTGTGGAGCTATGACACATGTTGCCAAGGAATGCATGGAAAGAGCAAGAAAGGTAGGAGCAAAGTATACAAACAAGAGCATTGCTGCTGATGAAAAAAAAGAAACTTCTGAAACTTGTGAGCTTGACTATGAGAGAAAACGGGACAGATGGGAGGGTTATGATGTATCAACATACGCCCGAGTCGTTAAGGTGTATGAAGCCAGAGACCACACTCGAATGAAGTTCTTGAAGGAACAGAAGCTGAAGAAATTGGAGAAGGGGGATCAAAATGATGAGGGTGCTGCAATTGATGAGTCTGAAGACGATTTAAGGATAGACGAGGCAAAGGTTGATGAAAGGAAACAAATCGACTTCACAAAGGTTGAGAAGCGTGTGCGAACAACAGATGGTGGGAGTACAGGAACTGTGAGGTAATTTTCATGTTGCTGTCATTTTAAAATTGCATGGCAGAGTTGATTGGTAATTATCACTTCTAATACTTTTCGTACGATGATTGCAACTGAAATATCTTAATCTTCAGGAACCTACGTATTCGAGAGGATACTGCAAAATATCTTCTCAATCTTGATGTCAATTCTGCACATTATGACCCCAAGACTAGGTCCATGCGCGAAGATCCTCTTCCAGAGTCAAATCCAAACGAAAAGTTTTACATGGTAACTTGGTCTCAAAGATTAAATTTTTTAGGGAACTTGCTGATTTGCTTTATATTATTGCTTCTTGCATGGTTATCTTGTATTTGGGTTAAAATTTGTTTTTGTTCTGTAGGGTGATAACAATTGTAGAAATAGTGGTCAAGCTTTGGAGTTCAAGGAATTAAACAACTATGCTCGGGAAGCATTTGACAAGGGACAAGATGTTCATATGCTAGCAGGTCCTTCCCAAGTTGAATTGCTCCATAAGAATTTCAAGGTCATGAAGGAGAAATCGGCGTCTCAATGGAACAAAACTATCATTGAGAAGTATAACTATGTAGCTTTGAACGACCCACTTCCAAGAGAACTTCTGCTGGGTCAGAGTGAGAGGCAAATTCTGTATGATCGTGCTGGTAGAATTATTAAGTGA
Protein sequence

>MS.gene066056.t1

MATASAAFKSREDHQKQIQLEEARKSGLAPAELDEDGKEINPHIPRFISSPPWYLKAARPSLKHQRKQISHANNTSPWSSRVTKTFQASKYRKGACENCGAMTHVAKECMERARKVGAKYTNKSIAADEKKETSETCELDYERKRDRWEGYDVSTYARVVKVYEARDHTRMKFLKEQKLKKLEKGDQNDEGAAIDESEDDLRIDEAKVDERKQIDFTKVEKRVRTTDGGSTGTVRNLRIREDTAKYLLNLDVNSAHYDPKTRSMREDPLPESNPNEKFYMGDNNCRNSGQALEFKELNNYAREAFDKGQDVHMLAGPSQVELLHKNFKVMKEKSASQWNKTIIEKYNYVALNDPLPRELLLGQSERQILYDRAGRIIK