Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056252.t1 | RHN82609.1 | 72.6 | 157 | 40 | 3 | 80 | 235 | 379 | 533 | 1.10E-54 | 223.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056252.t1 | G7IE64 | 72.6 | 157 | 40 | 3 | 80 | 235 | 379 | 533 | 8.0e-55 | 223.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene056252 | 0.800786 | 1.22E-48 | -1.69E-46 |
| MS.gene049254 | MS.gene056252 | 0.805636 | 1.21E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene056252 | 0.805541 | 1.27E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene056252 | 0.810941 | 8.97E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene056252 | 0.807979 | 3.88E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene056252 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene056252 | 0.822948 | 1.80E-53 | -1.69E-46 |
| MS.gene05415 | MS.gene056252 | 0.802272 | 6.07E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene056252 | 0.802558 | 5.30E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene056252 | 0.833893 | 4.11E-56 | -1.69E-46 |
| MS.gene054801 | MS.gene056252 | 0.800194 | 1.62E-48 | -1.69E-46 |
| MS.gene055227 | MS.gene056252 | 0.808077 | 3.70E-50 | -1.69E-46 |
| MS.gene055228 | MS.gene056252 | 0.815636 | 8.35E-52 | -1.69E-46 |
| MS.gene055464 | MS.gene056252 | 0.815436 | 9.25E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene056252 | 0.825724 | 4.01E-54 | -1.69E-46 |
| MS.gene056050 | MS.gene056252 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene056252 | 0.801998 | 6.91E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene05686 | 0.801459 | 8.91E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene057208 | 0.80457 | 2.03E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene057444 | 0.808118 | 3.62E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene058010 | 0.833404 | 5.44E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene058783 | 0.805172 | 1.52E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene058979 | 0.826225 | 3.05E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene059584 | 0.808077 | 3.70E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene060011 | 0.813792 | 2.14E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene060167 | 0.801844 | 7.43E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene062042 | 0.835043 | 2.11E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene06269 | 0.8155 | 8.95E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene063209 | 0.821097 | 4.84E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene065039 | 0.80848 | 3.03E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene065347 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene065863 | 0.818122 | 2.31E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene065904 | 0.821993 | 3.00E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene066056 | 0.802212 | 6.24E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene066335 | 0.823924 | 1.07E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene06643 | 0.800857 | 1.18E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene06698 | 0.801173 | 1.02E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene067173 | 0.824133 | 9.52E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene06723 | 0.812694 | 3.73E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene067473 | 0.816867 | 4.43E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene068526 | 0.816946 | 4.25E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene068924 | 0.845083 | 5.06E-59 | -1.69E-46 |
| MS.gene056252 | MS.gene06940 | 0.803994 | 2.67E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene069519 | 0.804852 | 1.77E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene070301 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene070478 | 0.804348 | 2.26E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene071342 | 0.800551 | 1.37E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene071445 | 0.801407 | 9.14E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene072098 | 0.810112 | 1.36E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene072397 | -0.812442 | 4.23E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene072677 | 0.814538 | 1.46E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene072819 | 0.81592 | 7.22E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene07294 | 0.817966 | 2.51E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene072994 | 0.805198 | 1.50E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene073008 | 0.835581 | 1.54E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene073016 | -0.814987 | 1.16E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene073139 | 0.838919 | 2.16E-57 | -1.69E-46 |
| MS.gene056252 | MS.gene073753 | 0.806278 | 8.89E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene073853 | 0.814253 | 1.69E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene074320 | 0.801146 | 1.03E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene074604 | 0.815811 | 7.64E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene074607 | 0.800978 | 1.12E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene07876 | 0.800165 | 1.64E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene08806 | 0.801684 | 8.02E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene08853 | 0.813709 | 2.23E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene09008 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene20809 | 0.839363 | 1.66E-57 | -1.69E-46 |
| MS.gene056252 | MS.gene20859 | 0.815335 | 9.74E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene21058 | 0.802047 | 6.75E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene22091 | 0.819526 | 1.11E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene22144 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene23528 | 0.803536 | 3.33E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene24067 | 0.820243 | 7.60E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene25151 | 0.814354 | 1.61E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene25778 | 0.83334 | 5.64E-56 | -1.69E-46 |
| MS.gene056252 | MS.gene25978 | 0.819082 | 1.40E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene26062 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene29850 | 0.805692 | 1.18E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene30301 | 0.807429 | 5.08E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene30970 | 0.801065 | 1.07E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene31142 | 0.81397 | 1.95E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene31283 | 0.814486 | 1.50E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene31855 | 0.800002 | 1.77E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene31904 | 0.800261 | 1.57E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene32747 | 0.822182 | 2.72E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene33624 | 0.829596 | 4.71E-55 | -1.69E-46 |
| MS.gene056252 | MS.gene33644 | 0.811417 | 7.07E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene34065 | 0.81245 | 4.21E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene34180 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene34667 | 0.804414 | 2.18E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene35375 | 0.824009 | 1.02E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene35611 | 0.813024 | 3.15E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene35864 | 0.802521 | 5.39E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene36569 | 0.82052 | 6.57E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene37612 | 0.820546 | 6.48E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene38381 | 0.81567 | 8.21E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene40068 | 0.817543 | 3.12E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene40079 | 0.812143 | 4.92E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene40381 | -0.807862 | 4.11E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene41121 | 0.812469 | 4.17E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene41240 | 0.810145 | 1.33E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene42645 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene43019 | 0.807475 | 4.96E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene43430 | 0.824102 | 9.68E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene43973 | 0.814056 | 1.87E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene44364 | 0.815253 | 1.02E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene44743 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene45507 | 0.80994 | 1.48E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene45613 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene46132 | 0.80039 | 1.47E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene47603 | 0.812204 | 4.77E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene48988 | 0.823238 | 1.54E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene50571 | 0.800032 | 1.74E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene51189 | 0.809989 | 1.44E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene51818 | 0.812333 | 4.47E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene51836 | 0.800876 | 1.17E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene52357 | 0.824306 | 8.67E-54 | -1.69E-46 |
| MS.gene056252 | MS.gene52525 | 0.806392 | 8.41E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene53191 | 0.804734 | 1.87E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene53476 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene56441 | 0.811049 | 8.50E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene56537 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene58196 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene58547 | 0.80462 | 1.98E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene58638 | 0.801488 | 8.79E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene58686 | 0.813227 | 2.85E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene59780 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene60903 | 0.804789 | 1.82E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene61388 | 0.809968 | 1.46E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene61716 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene63984 | 0.815867 | 7.42E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene64249 | 0.809911 | 1.50E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene64567 | 0.80604 | 9.98E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene64772 | 0.838742 | 2.40E-57 | -1.69E-46 |
| MS.gene056252 | MS.gene66077 | 0.800782 | 1.23E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene66700 | 0.801542 | 8.57E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene67007 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene67220 | 0.800435 | 1.44E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene67388 | 0.818076 | 2.37E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene67662 | 0.816402 | 5.63E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene68543 | 0.813098 | 3.04E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene68999 | 0.800401 | 1.47E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene69740 | 0.814413 | 1.56E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene70534 | 0.858344 | 8.79E-63 | -1.69E-46 |
| MS.gene056252 | MS.gene70895 | 0.813768 | 2.17E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene72268 | 0.806493 | 8.01E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene72400 | 0.80285 | 4.61E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene73332 | 0.808879 | 2.49E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene73820 | 0.801786 | 7.64E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene77015 | 0.802807 | 4.71E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene77220 | 0.807479 | 4.95E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene78775 | 0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene79285 | 0.814133 | 1.80E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene80548 | 0.80649 | 8.02E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene80704 | 0.807518 | 4.86E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene80853 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene81047 | 0.82093 | 5.29E-53 | -1.69E-46 |
| MS.gene056252 | MS.gene82542 | 0.803215 | 3.88E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene82568 | 0.800767 | 1.23E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene82699 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene82793 | 0.8044 | 2.20E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene82879 | 0.800714 | 1.27E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene86844 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene87669 | 0.814795 | 1.28E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene88171 | 0.809472 | 1.86E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene90022 | 0.8103 | 1.23E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene90525 | 0.809412 | 1.92E-50 | -1.69E-46 |
| MS.gene056252 | MS.gene91255 | 0.801954 | 7.06E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene91676 | 0.803245 | 3.82E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene92981 | 0.801106 | 1.05E-48 | -1.69E-46 |
| MS.gene056252 | MS.gene93764 | 0.855095 | 7.94E-62 | -1.69E-46 |
| MS.gene056252 | MS.gene95981 | 0.813382 | 2.63E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene96287 | 0.80173 | 7.84E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene97534 | 0.839127 | 1.91E-57 | -1.69E-46 |
| MS.gene056252 | MS.gene98087 | 0.81572 | 8.00E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene98088 | 0.813872 | 2.05E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene98394 | 0.828391 | 9.23E-55 | -1.69E-46 |
| MS.gene056252 | MS.gene98611 | 0.815161 | 1.07E-51 | -1.69E-46 |
| MS.gene056252 | MS.gene98612 | 0.841502 | 4.57E-58 | -1.69E-46 |
| MS.gene056252 | MS.gene98774 | 0.805465 | 1.32E-49 | -1.69E-46 |
| MS.gene056252 | MS.gene99746 | 0.802119 | 6.53E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056252.t1 | MTR_1g114070 | 70.588 | 153 | 36 | 3 | 87 | 235 | 386 | 533 | 5.25e-62 | 209 |
| MS.gene056252.t1 | MTR_1g069565 | 57.669 | 163 | 55 | 4 | 80 | 235 | 298 | 453 | 2.37e-50 | 176 |
| MS.gene056252.t1 | MTR_1g069565 | 57.669 | 163 | 55 | 4 | 80 | 235 | 298 | 453 | 2.49e-50 | 176 |
| MS.gene056252.t1 | MTR_1g114150 | 56.410 | 156 | 64 | 3 | 80 | 235 | 497 | 648 | 1.04e-45 | 163 |
| MS.gene056252.t1 | MTR_1g114150 | 56.410 | 156 | 64 | 3 | 80 | 235 | 497 | 648 | 1.12e-45 | 162 |
| MS.gene056252.t1 | MTR_0020s0100 | 49.045 | 157 | 78 | 2 | 80 | 235 | 173 | 328 | 5.07e-42 | 151 |
| MS.gene056252.t1 | MTR_1g114130 | 54.730 | 148 | 63 | 4 | 89 | 235 | 490 | 634 | 5.21e-42 | 152 |
| MS.gene056252.t1 | MTR_5g047620 | 47.771 | 157 | 76 | 4 | 80 | 235 | 230 | 381 | 1.35e-32 | 125 |
| MS.gene056252.t1 | MTR_5g065200 | 42.177 | 147 | 84 | 1 | 89 | 235 | 304 | 449 | 9.49e-32 | 122 |
| MS.gene056252.t1 | MTR_8g062940 | 44.595 | 148 | 54 | 3 | 41 | 188 | 164 | 283 | 1.09e-26 | 106 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 44 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCATACTCAAGCTTAAT+TGG | 0.220679 | 1.2:-84343543 | None:intergenic |
| TCACATTCATTATCAGCTTT+TGG | 0.248622 | 1.2:-84343705 | None:intergenic |
| TGTCATTTCTTTGACATTGA+TGG | 0.286327 | 1.2:-84342593 | None:intergenic |
| ACTAACTCAGAGATGCAATT+TGG | 0.317312 | 1.2:-84343762 | None:intergenic |
| ATATCATCGGTGTACCTAAC+AGG | 0.339047 | 1.2:-84343866 | None:intergenic |
| CGCTGATTTAAGTTTCTTGT+GGG | 0.366351 | 1.2:-84342435 | None:intergenic |
| ATTCGTGAGTGGTCAAGATC+TGG | 0.381498 | 1.2:+84343648 | MS.gene056252:CDS |
| GAGAGGAGACTCGTGATAAT+AGG | 0.388123 | 1.2:+84343828 | MS.gene056252:CDS |
| GTTCTTGCTCGAACCCTGTT+AGG | 0.393536 | 1.2:+84343852 | MS.gene056252:CDS |
| CGAGGTCGCAATTATCTACA+TGG | 0.434006 | 1.2:+84343567 | MS.gene056252:CDS |
| GAAGTATCCTTCTCAGTTCA+AGG | 0.464781 | 1.2:-84343737 | None:intergenic |
| TCGCTGATTTAAGTTTCTTG+TGG | 0.474100 | 1.2:-84342436 | None:intergenic |
| ATCAATGTCAAAGAAATGAC+AGG | 0.501804 | 1.2:+84342595 | MS.gene056252:CDS |
| GCACATCATGTATACAAAAG+TGG | 0.504161 | 1.2:+84342660 | MS.gene056252:CDS |
| GTGTTTATTGTGTATATCAT+CGG | 0.507594 | 1.2:-84343879 | None:intergenic |
| GCTGATAATGAATGTGATCA+TGG | 0.528933 | 1.2:+84343711 | MS.gene056252:CDS |
| GTTGCTGCGAGCTCCGTGGT+GGG | 0.531732 | 1.2:+84343499 | MS.gene056252:CDS |
| ATGGTTTCCTTGAACTGAGA+AGG | 0.533086 | 1.2:+84343730 | MS.gene056252:CDS |
| CCGTGGTGGGAAGCTTCTAG+TGG | 0.535084 | 1.2:+84343512 | MS.gene056252:CDS |
| TTCGTGAGTGGTCAAGATCT+GGG | 0.542666 | 1.2:+84343649 | MS.gene056252:CDS |
| TAAGTTTCTTGTGGGACTTG+TGG | 0.544227 | 1.2:-84342427 | None:intergenic |
| TTAGATGCACAAAATGCAAA+CGG | 0.550175 | 1.2:+84342628 | MS.gene056252:CDS |
| AACTCAGAGATGCAATTTGG+AGG | 0.551495 | 1.2:-84343759 | None:intergenic |
| CGTGGTGGGAAGCTTCTAGT+GGG | 0.559331 | 1.2:+84343513 | MS.gene056252:CDS |
| TTGACATTGATGGCACATTG+AGG | 0.559359 | 1.2:-84342583 | None:intergenic |
| TGTTGCTGCGAGCTCCGTGG+TGG | 0.562600 | 1.2:+84343498 | MS.gene056252:CDS |
| ATGGTGTAGATCTACAGCCT+TGG | 0.569025 | 1.2:-84343954 | None:intergenic |
| TGTCAAAGAAATGACAGGGC+CGG | 0.578080 | 1.2:+84342600 | MS.gene056252:CDS |
| CACGGAGCTCGCAGCAACAG+AGG | 0.580415 | 1.2:-84343494 | None:intergenic |
| ACAATCAAGCTTCAGATGAG+AGG | 0.585599 | 1.2:+84343811 | MS.gene056252:CDS |
| TGGACAAGGAATGCTACCAT+CGG | 0.593451 | 1.2:-84343685 | None:intergenic |
| AATCAGCGAGAGTAATGCTA+AGG | 0.598965 | 1.2:+84342450 | MS.gene056252:CDS |
| AGAAAGTGTATCACATGCAG+AGG | 0.606509 | 1.2:+84343614 | MS.gene056252:CDS |
| ATACACAATAAACACAAGGA+AGG | 0.616103 | 1.2:+84343887 | MS.gene056252:CDS |
| CTCTGTTGCTGCGAGCTCCG+TGG | 0.620459 | 1.2:+84343495 | MS.gene056252:CDS |
| CCACTAGAAGCTTCCCACCA+CGG | 0.634932 | 1.2:-84343512 | None:intergenic |
| TATCATCGGTGTACCTAACA+GGG | 0.654426 | 1.2:-84343865 | None:intergenic |
| GGGTGGCATGCAAATGCCGA+TGG | 0.671435 | 1.2:+84343669 | MS.gene056252:CDS |
| ATGAGTCTACGATTCGTGAG+TGG | 0.678627 | 1.2:+84343637 | MS.gene056252:CDS |
| TCAATGTCAAAGAAATGACA+GGG | 0.687101 | 1.2:+84342596 | MS.gene056252:CDS |
| GCAGCAACAGAGGAGACCAA+AGG | 0.694380 | 1.2:-84343484 | None:intergenic |
| TGATATACACAATAAACACA+AGG | 0.697614 | 1.2:+84343883 | MS.gene056252:CDS |
| GGTCGCAATTATCTACATGG+TGG | 0.698999 | 1.2:+84343570 | MS.gene056252:CDS |
| GTGAGTGGTCAAGATCTGGG+TGG | 0.773278 | 1.2:+84343652 | MS.gene056252:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTATAATTTGATTTT+GGG | + | chr1.2:84343243-84343262 | MS.gene056252:intron | 10.0% |
| !!! | TTCATTTTATAATTTGATTT+TGG | + | chr1.2:84343242-84343261 | MS.gene056252:intron | 10.0% |
| !! | TAGATTTCAAATATAGACTA+CGG | - | chr1.2:84343025-84343044 | None:intergenic | 20.0% |
| !!! | ATATTTGAAATCTATCCATT+TGG | + | chr1.2:84343031-84343050 | MS.gene056252:intron | 20.0% |
| ! | AAATCATACTCAAGCTTAAT+TGG | - | chr1.2:84343546-84343565 | None:intergenic | 25.0% |
| ! | ACAAAGTAAAACAGAAGTTA+AGG | - | chr1.2:84342693-84342712 | None:intergenic | 25.0% |
| ! | ATATCACTCTCTTTCAATTT+AGG | - | chr1.2:84342883-84342902 | None:intergenic | 25.0% |
| ! | ATTTCCTATAGTAAACCAAA+TGG | - | chr1.2:84343049-84343068 | None:intergenic | 25.0% |
| ! | GTGTTTATTGTGTATATCAT+CGG | - | chr1.2:84343882-84343901 | None:intergenic | 25.0% |
| ! | TATTGCACATATTACATGTT+TGG | + | chr1.2:84342798-84342817 | MS.gene056252:intron | 25.0% |
| ! | TCTCAAGCTAAATATAATAC+CGG | + | chr1.2:84343289-84343308 | MS.gene056252:intron | 25.0% |
| ! | TCTGCTCATTTATATAGTTT+GGG | + | chr1.2:84342492-84342511 | MS.gene056252:intron | 25.0% |
| ! | TGATATACACAATAAACACA+AGG | + | chr1.2:84343883-84343902 | MS.gene056252:CDS | 25.0% |
| ! | TGTAATATGTGCAATAACTT+CGG | - | chr1.2:84342794-84342813 | None:intergenic | 25.0% |
| !! | CAAATTTTATATACTGTCCA+AGG | + | chr1.2:84343937-84343956 | MS.gene056252:CDS | 25.0% |
| !! | CATATTACATGTTTGGATTT+TGG | + | chr1.2:84342805-84342824 | MS.gene056252:intron | 25.0% |
| !! | TCATTTATATAGTTTGGGTT+TGG | + | chr1.2:84342497-84342516 | MS.gene056252:intron | 25.0% |
| !!! | AATATGCCTTGTTTGATAAT+TGG | + | chr1.2:84342760-84342779 | MS.gene056252:intron | 25.0% |
| !!! | ATATGCCTTGTTTGATAATT+GGG | + | chr1.2:84342761-84342780 | MS.gene056252:intron | 25.0% |
| !!! | TTAATCAACAGTGTTTTGAA+GGG | + | chr1.2:84342555-84342574 | MS.gene056252:intron | 25.0% |
| AAGAATAGTTAATCGTTGGA+AGG | - | chr1.2:84342993-84343012 | None:intergenic | 30.0% | |
| AGAATAGTTAATCGTTGGAA+GGG | - | chr1.2:84342992-84343011 | None:intergenic | 30.0% | |
| ATACACAATAAACACAAGGA+AGG | + | chr1.2:84343887-84343906 | MS.gene056252:CDS | 30.0% | |
| ATCAATGTCAAAGAAATGAC+AGG | + | chr1.2:84342595-84342614 | MS.gene056252:CDS | 30.0% | |
| CTCTGCTCATTTATATAGTT+TGG | + | chr1.2:84342491-84342510 | MS.gene056252:intron | 30.0% | |
| TACATCCCAATTATCAAACA+AGG | - | chr1.2:84342769-84342788 | None:intergenic | 30.0% | |
| TCAATGTCAAAGAAATGACA+GGG | + | chr1.2:84342596-84342615 | MS.gene056252:CDS | 30.0% | |
| TCAGAAGAATAGTTAATCGT+TGG | - | chr1.2:84342997-84343016 | None:intergenic | 30.0% | |
| TGAAGAACAAATGATTGAGA+AGG | + | chr1.2:84343155-84343174 | MS.gene056252:intron | 30.0% | |
| TTAGATGCACAAAATGCAAA+CGG | + | chr1.2:84342628-84342647 | MS.gene056252:CDS | 30.0% | |
| ! | ATTTAGGATACCTTAGCAAA+AGG | - | chr1.2:84342867-84342886 | None:intergenic | 30.0% |
| ! | CACATTTTCTCTGACTATAT+AGG | - | chr1.2:84343207-84343226 | None:intergenic | 30.0% |
| ! | CTATCCATTTGGTTTACTAT+AGG | + | chr1.2:84343042-84343061 | MS.gene056252:intron | 30.0% |
| ! | TCACATTCATTATCAGCTTT+TGG | - | chr1.2:84343708-84343727 | None:intergenic | 30.0% |
| ! | TGTCATTTCTTTGACATTGA+TGG | - | chr1.2:84342596-84342615 | None:intergenic | 30.0% |
| !! | CTTAATCAACAGTGTTTTGA+AGG | + | chr1.2:84342554-84342573 | MS.gene056252:intron | 30.0% |
| !!! | ATTTTGGGATGTGAATTACA+GGG | + | chr1.2:84343258-84343277 | MS.gene056252:intron | 30.0% |
| !!! | TAATCAACAGTGTTTTGAAG+GGG | + | chr1.2:84342556-84342575 | MS.gene056252:intron | 30.0% |
| !!! | TTTTTTGTTGCCTTTTGCTA+AGG | + | chr1.2:84342854-84342873 | MS.gene056252:intron | 30.0% |
| ACTAACTCAGAGATGCAATT+TGG | - | chr1.2:84343765-84343784 | None:intergenic | 35.0% | |
| ACTATAGGAAATGAAGCGTA+AGG | + | chr1.2:84343057-84343076 | MS.gene056252:intron | 35.0% | |
| CAAGCTAAATATAATACCGG+CGG | + | chr1.2:84343292-84343311 | MS.gene056252:intron | 35.0% | |
| GACTTCTTCCACATTTAAGA+CGG | + | chr1.2:84343128-84343147 | MS.gene056252:intron | 35.0% | |
| GCACATCATGTATACAAAAG+TGG | + | chr1.2:84342660-84342679 | MS.gene056252:CDS | 35.0% | |
| TTCATCAACCGTCTTAAATG+TGG | - | chr1.2:84343139-84343158 | None:intergenic | 35.0% | |
| TTCTCTAAGTATCTGCTGAA+AGG | + | chr1.2:84343106-84343125 | MS.gene056252:intron | 35.0% | |
| ! | AAGCTTGAGTATGATTTTCG+AGG | + | chr1.2:84343549-84343568 | MS.gene056252:CDS | 35.0% |
| ! | CAAAATGCTCTTTTGACCTT+TGG | + | chr1.2:84343468-84343487 | MS.gene056252:CDS | 35.0% |
| ! | GCTGATAATGAATGTGATCA+TGG | + | chr1.2:84343711-84343730 | MS.gene056252:CDS | 35.0% |
| ! | TCATTATCAGCTTTTGGACA+AGG | - | chr1.2:84343702-84343721 | None:intergenic | 35.0% |
| !! | CGCTGATTTAAGTTTCTTGT+GGG | - | chr1.2:84342438-84342457 | None:intergenic | 35.0% |
| !! | TCATCTTTAGAATAATCCGC+CGG | - | chr1.2:84343311-84343330 | None:intergenic | 35.0% |
| !! | TCGCTGATTTAAGTTTCTTG+TGG | - | chr1.2:84342439-84342458 | None:intergenic | 35.0% |
| !!! | AATCAACAGTGTTTTGAAGG+GGG | + | chr1.2:84342557-84342576 | MS.gene056252:intron | 35.0% |
| !!! | GATTTTGGGATGTGAATTAC+AGG | + | chr1.2:84343257-84343276 | MS.gene056252:intron | 35.0% |
| AACTCAGAGATGCAATTTGG+AGG | - | chr1.2:84343762-84343781 | None:intergenic | 40.0% | |
| AATCAGCGAGAGTAATGCTA+AGG | + | chr1.2:84342450-84342469 | MS.gene056252:CDS | 40.0% | |
| ACAATCAAGCTTCAGATGAG+AGG | + | chr1.2:84343811-84343830 | MS.gene056252:CDS | 40.0% | |
| ATAGTTAATCGTTGGAAGGG+TGG | - | chr1.2:84342989-84343008 | None:intergenic | 40.0% | |
| ATATCATCGGTGTACCTAAC+AGG | - | chr1.2:84343869-84343888 | None:intergenic | 40.0% | |
| ATGGTTTCCTTGAACTGAGA+AGG | + | chr1.2:84343730-84343749 | MS.gene056252:CDS | 40.0% | |
| TAAGTTTCTTGTGGGACTTG+TGG | - | chr1.2:84342430-84342449 | None:intergenic | 40.0% | |
| TATCATCGGTGTACCTAACA+GGG | - | chr1.2:84343868-84343887 | None:intergenic | 40.0% | |
| TGTTCTGGTAAGGACTGATT+TGG | + | chr1.2:84343336-84343355 | MS.gene056252:intron | 40.0% | |
| TTGCAATTATCACAGCACAC+AGG | - | chr1.2:84342919-84342938 | None:intergenic | 40.0% | |
| ! | AGAAAGTGTATCACATGCAG+AGG | + | chr1.2:84343614-84343633 | MS.gene056252:CDS | 40.0% |
| ! | AGCATTTTGTACAGCTTCTG+TGG | - | chr1.2:84343457-84343476 | None:intergenic | 40.0% |
| ! | GAAGTATCCTTCTCAGTTCA+AGG | - | chr1.2:84343740-84343759 | None:intergenic | 40.0% |
| ! | TTGACATTGATGGCACATTG+AGG | - | chr1.2:84342586-84342605 | None:intergenic | 40.0% |
| ! | TTTTGTGCATCTAACAACGC+CGG | - | chr1.2:84342622-84342641 | None:intergenic | 40.0% |
| !! | TTTGGGTTTGGTGTTATACG+CGG | + | chr1.2:84342509-84342528 | MS.gene056252:intron | 40.0% |
| ATGAGTCTACGATTCGTGAG+TGG | + | chr1.2:84343637-84343656 | MS.gene056252:CDS | 45.0% | |
| ATTCGTGAGTGGTCAAGATC+TGG | + | chr1.2:84343648-84343667 | MS.gene056252:CDS | 45.0% | |
| CGAGGTCGCAATTATCTACA+TGG | + | chr1.2:84343567-84343586 | MS.gene056252:CDS | 45.0% | |
| CTAAAGATGAGCGTGTGTTC+TGG | + | chr1.2:84343321-84343340 | MS.gene056252:intron | 45.0% | |
| GAGAGGAGACTCGTGATAAT+AGG | + | chr1.2:84343828-84343847 | MS.gene056252:CDS | 45.0% | |
| GCAATTGCAAAGCATGCTTG+CGG | + | chr1.2:84342935-84342954 | MS.gene056252:intron | 45.0% | |
| GGTCGCAATTATCTACATGG+TGG | + | chr1.2:84343570-84343589 | MS.gene056252:CDS | 45.0% | |
| TATAGGAATACCTCGTCTCC+TGG | - | chr1.2:84343190-84343209 | None:intergenic | 45.0% | |
| TGGACAAGGAATGCTACCAT+CGG | - | chr1.2:84343688-84343707 | None:intergenic | 45.0% | |
| TGTCAAAGAAATGACAGGGC+CGG | + | chr1.2:84342600-84342619 | MS.gene056252:CDS | 45.0% | |
| TTCGTGAGTGGTCAAGATCT+GGG | + | chr1.2:84343649-84343668 | MS.gene056252:CDS | 45.0% | |
| TTGAGAAGGAAAGAGAAGCC+AGG | + | chr1.2:84343169-84343188 | MS.gene056252:intron | 45.0% | |
| ! | GGTGTTATACGCGGTAATTG+TGG | + | chr1.2:84342518-84342537 | MS.gene056252:intron | 45.0% |
| AACTCAACCCTCTCTCGTGT+TGG | - | chr1.2:84343088-84343107 | None:intergenic | 50.0% | |
| GATGAGCGTGTGTTCTGGTA+AGG | + | chr1.2:84343326-84343345 | MS.gene056252:intron | 50.0% | |
| GTTCTTGCTCGAACCCTGTT+AGG | + | chr1.2:84343852-84343871 | MS.gene056252:CDS | 50.0% | |
| ACAGCACACAGGCATGCTCT+TGG | - | chr1.2:84342908-84342927 | None:intergenic | 55.0% | |
| AGGCTGAACCAACACGAGAG+AGG | + | chr1.2:84343077-84343096 | MS.gene056252:intron | 55.0% | |
| CCACTAGAAGCTTCCCACCA+CGG | - | chr1.2:84343515-84343534 | None:intergenic | 55.0% | |
| GAAAGAGAAGCCAGGAGACG+AGG | + | chr1.2:84343177-84343196 | MS.gene056252:intron | 55.0% | |
| GCAGCAACAGAGGAGACCAA+AGG | - | chr1.2:84343487-84343506 | None:intergenic | 55.0% | |
| GGCTGAACCAACACGAGAGA+GGG | + | chr1.2:84343078-84343097 | MS.gene056252:intron | 55.0% | |
| GTGAGTGGTCAAGATCTGGG+TGG | + | chr1.2:84343652-84343671 | MS.gene056252:CDS | 55.0% | |
| ! | CGTGGTGGGAAGCTTCTAGT+GGG | + | chr1.2:84343513-84343532 | MS.gene056252:CDS | 55.0% |
| GGGTGGCATGCAAATGCCGA+TGG | + | chr1.2:84343669-84343688 | MS.gene056252:CDS | 60.0% | |
| ! | CCGTGGTGGGAAGCTTCTAG+TGG | + | chr1.2:84343512-84343531 | MS.gene056252:CDS | 60.0% |
| CACGGAGCTCGCAGCAACAG+AGG | - | chr1.2:84343497-84343516 | None:intergenic | 65.0% | |
| CTCTGTTGCTGCGAGCTCCG+TGG | + | chr1.2:84343495-84343514 | MS.gene056252:CDS | 65.0% | |
| GTTGCTGCGAGCTCCGTGGT+GGG | + | chr1.2:84343499-84343518 | MS.gene056252:CDS | 65.0% | |
| TGTTGCTGCGAGCTCCGTGG+TGG | + | chr1.2:84343498-84343517 | MS.gene056252:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 84342419 | 84343965 | 84342419 | ID=MS.gene056252 |
| chr1.2 | mRNA | 84342419 | 84343965 | 84342419 | ID=MS.gene056252.t1;Parent=MS.gene056252 |
| chr1.2 | exon | 84342419 | 84342471 | 84342419 | ID=MS.gene056252.t1.exon1;Parent=MS.gene056252.t1 |
| chr1.2 | CDS | 84342419 | 84342471 | 84342419 | ID=cds.MS.gene056252.t1;Parent=MS.gene056252.t1 |
| chr1.2 | exon | 84342566 | 84342681 | 84342566 | ID=MS.gene056252.t1.exon2;Parent=MS.gene056252.t1 |
| chr1.2 | CDS | 84342566 | 84342681 | 84342566 | ID=cds.MS.gene056252.t1;Parent=MS.gene056252.t1 |
| chr1.2 | exon | 84343424 | 84343965 | 84343424 | ID=MS.gene056252.t1.exon3;Parent=MS.gene056252.t1 |
| chr1.2 | CDS | 84343424 | 84343965 | 84343424 | ID=cds.MS.gene056252.t1;Parent=MS.gene056252.t1 |
| Gene Sequence |
| Protein sequence |
