AlfalfaGEDB | MS.gene066075

M. sativa cultivar XinJiangDaYe / MS.gene066075

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066075.t1	XP_013470234.1	100	71	0	0	6	76	324	394	1.20E-31	145.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066075.t1	A0A072VR59	100.0	71	0	0	6	76	324	394	8.9e-32	145.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene05216	MS.gene066075	0.808207	3.47E-50	-1.69E-46
MS.gene059439	MS.gene066075	0.804758	1.85E-49	-1.69E-46

Showing 1 to 2 of 2 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066075.t1	MTR_1g111550	100.000	71	0	0	6	76	324	394	3.07e-43	147
MS.gene066075.t1	MTR_1g111510	84.507	71	11	0	6	76	326	396	1.46e-35	125
MS.gene066075.t1	MTR_1g111540	84.507	71	11	0	6	76	326	396	1.46e-35	125
MS.gene066075.t1	MTR_1g111530	81.690	71	13	0	6	76	322	392	4.05e-35	124
MS.gene066075.t1	MTR_7g102880	81.690	71	13	0	6	76	338	408	1.57e-33	120
MS.gene066075.t1	MTR_1g050550	65.217	69	24	0	8	76	335	403	3.69e-26	99.8
MS.gene066075.t1	MTR_1g059080	62.319	69	26	0	8	76	326	394	4.48e-25	96.7
MS.gene066075.t1	MTR_7g029015	55.882	68	28	1	9	76	342	407	3.71e-18	77.0
MS.gene066075.t1	MTR_4g073690	48.529	68	33	1	9	76	317	382	1.17e-14	67.0
MS.gene066075.t1	MTR_4g073690	48.529	68	33	1	9	76	317	382	1.40e-14	67.0

Showing 1 to 10 of 15 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066075.t1	AT2G39210	81.690	71	13	0	6	76	325	395	1.16e-35	126
MS.gene066075.t1	AT2G28120	70.423	71	21	0	6	76	316	386	2.80e-30	111
MS.gene066075.t1	AT5G50520	51.220	82	32	2	1	76	295	374	3.17e-16	71.6
MS.gene066075.t1	AT5G50630	51.220	82	32	2	1	76	295	374	3.17e-16	71.6
MS.gene066075.t1	AT3G01930	55.882	68	28	1	9	76	352	417	4.12e-16	71.2
MS.gene066075.t1	AT3G01930	55.882	68	28	1	9	76	239	304	4.26e-16	71.2
MS.gene066075.t1	AT3G01930	55.882	68	28	1	9	76	352	417	4.48e-16	71.2
MS.gene066075.t1	AT2G16660	48.529	68	33	1	9	76	313	378	1.00e-15	70.1
MS.gene066075.t1	AT2G16660	48.529	68	33	1	9	76	313	378	1.04e-15	70.1
MS.gene066075.t1	AT5G14120	54.412	68	29	1	9	76	347	412	3.00e-15	68.9

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 14 sgRNAs with CRISPR-Local

Find 18 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCTTCACCTTGTTCGGG+TGG	0.607960	1.4:+85486923	None:intergenic
ATAACATATCTATGCTGAAA+AGG	0.416968	1.4:+85486885	None:intergenic
ATGTTATTGCTATTCTTTGC+TGG	0.355922	1.4:-85486869	MS.gene066075:CDS
ATTGATAATTTAGGTCAAAT+TGG	0.249106	1.4:-85486815	MS.gene066075:CDS
CTATTCTTTGCTGGTACATG+TGG	0.516615	1.4:-85486860	MS.gene066075:CDS
GCTGGTACATGTGGTGTTGG+TGG	0.500330	1.4:-85486851	MS.gene066075:CDS
GGTCAAATTGGAACCTCACT+TGG	0.457053	1.4:-85486803	MS.gene066075:CDS
GTAAAATCTTCACCTTGTTC+GGG	0.366683	1.4:+85486920	None:intergenic
GTGAGTATTTGGAATTACCT+AGG	0.563575	1.4:-85486743	MS.gene066075:CDS
TAACATATCTATGCTGAAAA+GGG	0.471235	1.4:+85486886	None:intergenic

Showing 1 to 10 of 14 entries

Previous1 2Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	TGTAAAATCTTCACCTTGTT+CGG	+	chr1.4:85486767-85486786	None:intergenic	30.0%
	GTAAAATCTTCACCTTGTTC+GGG	+	chr1.4:85486766-85486785	None:intergenic	35.0%
	CTATTCTTTGCTGGTACATG+TGG	-	chr1.4:85486823-85486842	MS.gene066075:CDS	40.0%
	AAATCTTCACCTTGTTCGGG+TGG	+	chr1.4:85486763-85486782	None:intergenic	45.0%
	GGTCAAATTGGAACCTCACT+TGG	-	chr1.4:85486880-85486899	MS.gene066075:CDS	45.0%
	TTTGCTGGTACATGTGGTGT+TGG	-	chr1.4:85486829-85486848	MS.gene066075:CDS	45.0%
!	ATAACATATCTATGCTGAAA+AGG	+	chr1.4:85486801-85486820	None:intergenic	25.0%
!	TAACATATCTATGCTGAAAA+GGG	+	chr1.4:85486800-85486819	None:intergenic	25.0%
!	TTGTTTCATTAGTGAGTATT+TGG	-	chr1.4:85486929-85486948	MS.gene066075:CDS	25.0%
!	ATGTTATTGCTATTCTTTGC+TGG	-	chr1.4:85486814-85486833	MS.gene066075:CDS	30.0%

Showing 1 to 10 of 18 entries

Previous1 2Next

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	85486739	85486966	85486739	ID=MS.gene066075
chr1.4	mRNA	85486739	85486966	85486739	ID=MS.gene066075.t1;Parent=MS.gene066075
chr1.4	exon	85486739	85486966	85486739	ID=MS.gene066075.t1.exon1;Parent=MS.gene066075.t1
chr1.4	CDS	85486739	85486966	85486739	ID=cds.MS.gene066075.t1;Parent=MS.gene066075.t1

Gene Sequence	>MS.gene066075 ATGGTGGCAAAATATTTTAGTCCACCCGAACAAGGTGAAGATTTTACAATACTTCAAGCCCTTTTCAGCATAGATATGTTATTGCTATTCTTTGCTGGTACATGTGGTGTTGGTGGAACTTTAACAGCAATTGATAATTTAGGTCAAATTGGAACCTCACTTGGATACCCAAAAACAAGCATAAGCACATTTGTTTCATTAGTGAGTATTTGGAATTACCTAGGAAGA
Protein sequence	>MS.gene066075.t1 MVAKYFSPPEQGEDFTILQALFSIDMLLLFFAGTCGVGGTLTAIDNLGQIGTSLGYPKTSISTFVSLVSIWNYLGR