AlfalfaGEDB | MS.gene066095

M. sativa cultivar XinJiangDaYe / MS.gene066095

KEGG: -
GO: -
PFAM: PF00168.33 PF08372.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066095.t1	RHN63611.1	91.6	1036	19	1	1	968	3	1038	0.00E+00	1763

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066095.t1	B8XCH5	66.1	1092	235	9	1	968	1	1081	0.0e+00	1360.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066095.t1	G7JPX5	91.6	1036	19	1	1	968	3	1038	0.0e+00	1763.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058041	MS.gene066095	0.989452	3.51E-178	-1.69E-46
MS.gene058108	MS.gene066095	-0.809487	1.85E-50	-1.69E-46
MS.gene058171	MS.gene066095	-0.828187	1.03E-54	-1.69E-46
MS.gene058173	MS.gene066095	-0.827347	1.65E-54	-1.69E-46
MS.gene058175	MS.gene066095	-0.82319	1.58E-53	-1.69E-46
MS.gene060339	MS.gene066095	0.816438	5.53E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066095.t1	MTR_4g107850	96.413	892	31	1	78	968	147	1038	0.0	1781
MS.gene066095.t1	MTR_4g107850	78.378	111	22	1	1	109	3	113	2.05e-43	171
MS.gene066095.t1	MTR_6g028050	54.617	758	305	14	233	968	286	1026	0.0	835
MS.gene066095.t1	MTR_6g028050	40.171	117	61	1	13	129	3	110	1.02e-17	89.4
MS.gene066095.t1	MTR_7g092770	52.964	776	319	14	220	968	19	775	0.0	809
MS.gene066095.t1	MTR_0305s0020	52.842	774	325	12	218	968	18	774	0.0	804
MS.gene066095.t1	MTR_3g027150	51.415	813	328	18	205	968	28	822	0.0	796
MS.gene066095.t1	MTR_5g010390	51.905	761	323	13	233	968	265	1007	0.0	791
MS.gene066095.t1	MTR_5g010390	49.383	81	41	0	16	96	5	85	5.79e-16	83.6
MS.gene066095.t1	MTR_4g023460	50.948	791	336	16	211	968	371	1142	0.0	781

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066095.t1	AT1G74720	73.553	881	190	8	124	968	208	1081	0.0	1326
MS.gene066095.t1	AT1G74720	49.624	133	54	3	1	129	1	124	7.48e-30	128
MS.gene066095.t1	AT5G17980	55.333	750	305	12	233	968	316	1049	0.0	839
MS.gene066095.t1	AT5G17980	38.926	149	80	3	13	159	3	142	2.47e-18	91.3
MS.gene066095.t1	AT4G11610	43.627	1020	489	18	16	968	7	1007	0.0	831
MS.gene066095.t1	AT4G11610	43.482	1028	483	20	16	968	7	1011	0.0	831
MS.gene066095.t1	AT3G57880	52.781	773	326	12	218	968	18	773	0.0	809
MS.gene066095.t1	AT3G57880	52.781	773	326	12	218	968	18	773	0.0	809
MS.gene066095.t1	AT3G57880	52.781	773	326	12	218	968	18	773	0.0	809
MS.gene066095.t1	AT3G57880	52.781	773	326	12	218	968	18	773	0.0	809

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Find 304 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACCACTCGCGGTGA+AGG	0.560550	8.4:-19363291	None:intergenic
AAAATGGTTGCTGTGGCTTT+AGG	0.266507	8.4:+19365643	MS.gene066095:CDS
AAATCAGGTGGTTTGGAGCT+AGG	0.462960	8.4:-19365439	None:intergenic
AAATCCAAGGGTCCAGGAAA+AGG	0.425305	8.4:+19364572	MS.gene066095:CDS
AAATGGTTCCCGTTAGAAGG+TGG	0.575886	8.4:+19364377	MS.gene066095:CDS
AACCCAATGACTCGCCGGAA+TGG	0.515956	8.4:+19363700	MS.gene066095:CDS
AACCTAACGGTGAATCTGAG+AGG	0.643417	8.4:+19363523	MS.gene066095:CDS
AACGGAAAGTTGTATGTCGC+CGG	0.556257	8.4:-19363934	None:intergenic
AACGGTGAGAAGATTGGCGG+TGG	0.548470	8.4:+19362702	MS.gene066095:CDS
AACTGAAAGCCCGTTCGTGA+AGG	0.577259	8.4:+19363623	MS.gene066095:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTATGAAGAGACCTAA+TGG	+	chr8.4:19363456-19363475	MS.gene066095:CDS	30.0%
AGAGCTACAAAATTGTTCAT+TGG	+	chr8.4:19365577-19365596	MS.gene066095:CDS	30.0%
ATCTAATTCATCTGGATCAA+CGG	-	chr8.4:19365401-19365420	None:intergenic	30.0%
ATGGAAAAATCCAGTTACAA+CGG	+	chr8.4:19365222-19365241	MS.gene066095:CDS	30.0%
ATTCTTGAACTTGGAATCTT+AGG	+	chr8.4:19364527-19364546	MS.gene066095:CDS	30.0%
GGTTAGATGATATAAGAAGA+TGG	+	chr8.4:19365203-19365222	MS.gene066095:CDS	30.0%
TTAAATCTGGATACCAAACA+AGG	-	chr8.4:19365273-19365292	None:intergenic	30.0%
TTATGACAGGTTAAGAATGT+TGG	+	chr8.4:19365474-19365493	MS.gene066095:CDS	30.0%
AAGAAATTTGGGAATGGTAG+TGG	+	chr8.4:19362931-19362950	MS.gene066095:intron	35.0%
ACAACATATAAAAACCCGGT+TGG	-	chr8.4:19365301-19365320	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	19362667	19365765	19362667	ID=MS.gene066095
chr8.4	mRNA	19362667	19365765	19362667	ID=MS.gene066095.t1;Parent=MS.gene066095
chr8.4	exon	19362667	19362918	19362667	ID=MS.gene066095.t1.exon1;Parent=MS.gene066095.t1
chr8.4	CDS	19362667	19362918	19362667	ID=cds.MS.gene066095.t1;Parent=MS.gene066095.t1
chr8.4	exon	19363111	19365765	19363111	ID=MS.gene066095.t1.exon2;Parent=MS.gene066095.t1
chr8.4	CDS	19363111	19365765	19363111	ID=cds.MS.gene066095.t1;Parent=MS.gene066095.t1

Gene Sequence

>MS.gene066095

ATGGCAACGACGCCGTTTCAACAAGGACCGCCCCAAACGGTGAGAAGATTGGCGGTGGAAGTTGTTGACGCACGCAACCTTCTTCCCAAAGATGGTCAAGGAAGTTCCAGCCCTTACGTGGTGGCGGACTTCGACGGTCAGAGAAAACGAACCACCACCCGGTTTAAAGAACTCAACCCGGTTTGGAACGAGTTGCTTGAGTTCATCGTTTCTGACCCGGAGAATATGGAGTTTGAAGAGCTTGAAGTTGAGGTTTATAATGATAAGAAATTTGGGAATGGTAGTGGTCGCAAGAATCATTTTCTTGGTAGGGTTAAGCTTTATGGAACACAGTTTTCTTGTAGAGGTGAAGAAGCTTTGGTTTATTATACTTTAGAGAAGAAAGTGTTTCAGTTGGATTAGAGGTGAATCGGTTTGAAGATTTAATACGATGAGTTGTTACAGCAAGATGAACATCAGGCAGCAGCAGCAGCAAGAACAACCACCGCCGCCGGAGAAGAGCGGCACGGTGGCGCAGAGCAAGAGAGGAACAATCACAGTCACAGGCATCCGATGATGGGTGAAGAGGGAAGAGTTTATCAGGTTGAACAGATGGAGCATTGTGTGCCACTTCCTGACGGTCCTCCTTCACCGCGAGTGGTGGTTTTGGAAGAATCACCTTCTCCGGTAGTTCGTGTTCAACAAGATCCACCGTTGCGGGAGATGTACGCTCAACCGGAACCGGAAATGCAGTATCATCATCATCATCCTGACGTGAGGAAAATGCAAACAATGAGGAATGATAGAGTGAAGATTATGAAGAGACCTAATGGTAACGGTAATGGTGATTACGCGCCGAAAGATATCTCCGGGAAGAAACCTAACGGTGAATCTGAGAGGATTCATCCCTATGATCTAGTTGAACCAATGCAGTATCTGTTTGTTAGAATCGTGAAGGTTCGCGGGCTTAATCCTCCAACTGAAAGCCCGTTCGTGAAGGTTAGAACCTCAAGTCACTACGTCAGATCAAAGCCCGCGAGTTATAGGCCCAACGAACCCAATGACTCGCCGGAATGGAACCAGGTTTTTGCCCTTGGTTACAGCAAAACCGATGCAACCGGTGCTACGTTGGAGATTTCCGTTTGGGATTCACCTACAGAGCAATTTCTCGGCGGTGTTTGCTTTGATCTTTCTGATGTACCTATTCGTGATTCTCCAGATAGTCCTCTTGCTCCACAATGGTACCGTCTCGAAGGTGGCGCAGCAGAACAAAACGCCGGTAGAGTCTCCGGCGACATACAACTTTCCGTTTGGATCGGAACTCAATCCGACGACGCTTTTCCAGAAGCATGGAGTTCAGATGCACCATACGTGGCACACACTCGCTCCAAGGTTTATCAATCACCGAAGCTTTGGTATCTGAGAGTAACAGTCATGGAAGCACAAGACCTGAATCTAACTCCGAATCTACCACCGTTAACGGCGCCGGAGATTAGAGTGAAGGTACAATTAGGGTTTCAATCACAGAGAACAAGAAGAGGCTCAATGAACCACCACAGCATGTCGTTTCACTGGCACGAAGATCTTCTCTTCGTCGCCGGTGAGCCACTAGAAGATTCCATGGTCCTTCTCGTAGAAGATCGCACCACCAAGGAAGCGGCGTTACTCGGCCACGTCGTCATTCCTCTGACGTCAATCGAACAGCGAATAGACGACCGCCACGTGCCAGCCAAATGGTTCCCGTTAGAAGGTGGGTCCTACTGTGGGAGAGTCCACCTACGCCTCTGTTTAGAAGGTGGTTATCACGTGCTTGATGAAGCGGCGCACGTGTGTAGTGATTTTCGTCCCACCGCGAAATCTCTATGGAAACCTCCAGTTGGAATTCTTGAACTTGGAATCTTAGGCGCTCGTGGTCTTCTTCCGATGAAATCCAAGGGTCCAGGAAAAGGGTCCACTGATTCTTACTGTGTGGCCAAGTATGGCAAAAAATGGGTCAGAACCCGAACCGTAACGGATAGCTTCGACCCACGGTGGAACGAACAGTACACATGGCAGGTATATGATCCTTGCACTGTCTTAACCGTAGGTGTATTTGACAACTGGCGTATGTTTGCTGATGTGGCAGAAGAAAAACCAGATTGCCGTATAGGTAAAATTCGTATACGAGTTTCTACACTAGAGAGCAATAAAATCTACACAAGTTCATATCCATTACTGGTTCTGACTCGAAACGGCTTGAAGAAAATGGGTGAAATCGAGTTAGCGGTTCGGTTCGCTTGCCCCGGGTTTTTTCCTGACACATGTGCGGTTTATCAACAACCATTACTTCCAAAAATGCACTACATTCGTCCACTTGGTGTGGCCCAACAGGAGGCTTTACGCGGGGCAGCCACTAAGATGGTAGCTCAGTGGCTGGCTCGCTCAGAGCCTCCGATGGGGCACGAGGTTGTTCGATACATGTTGGATGCTGACTCACATGCTTGGAGTATGAGGAAAAGTAAAGCCAATTGGTTTAGAATTGTGGCAGTGTTAGCTTGGGCTGTTGGATTAGCTAAGTGGTTAGATGATATAAGAAGATGGAAAAATCCAGTTACAACGGTTTTGCTTCATATACTTTACTTGGTCCTTGTTTGGTATCCAGATTTAATTGTTCCAACCGGGTTTTTATATGTTGTTTTGATTGGAATATGGTATTTCCGTTTTAGACCCAAGATACCAGCTGGTATGGATACAAGATTATCACAAGCTGAAGCCGTTGATCCAGATGAATTAGATGAAGAATTTGACACAATGCCTAGCTCCAAACCACCTGATTTGGTTCGGGTTCGTTATGACAGGTTAAGAATGTTGGCTGCAAGGGTGCAAACTGTTTTGGGTGATTTTGCAACACAAGGTGAGAGGGTTCAAGCATTGGTTAGTTGGAGAGACCCAAGAGCTACAAAATTGTTCATTGGAGTGTGTCTTGTTATTGCTATTATACTCTATTCAGTGCCTCCTAAAATGGTTGCTGTGGCTTTAGGATTCTACTATCTTCGTCATCCAATGTTTAGGAACCCAATGCCTCCGGCTAGTTTGAACTTTTTCAGAAGACTTCCTAGTTTGTCTGATAGGTTGATGTAG

Protein sequence

>MS.gene066095.t1

MATTPFQQGPPQTVRRLAVEVVDARNLLPKDGQGSSSPYVVADFDGQRKRTTTRFKELNPVWNELLEFIVSDPENMEFEELEVEQDEHQAAAAARTTTAAGEERHGGAEQERNNHSHRHPMMGEEGRVYQVEQMEHCVPLPDGPPSPRVVVLEESPSPVVRVQQDPPLREMYAQPEPEMQYHHHHPDVRKMQTMRNDRVKIMKRPNGNGNGDYAPKDISGKKPNGESERIHPYDLVEPMQYLFVRIVKVRGLNPPTESPFVKVRTSSHYVRSKPASYRPNEPNDSPEWNQVFALGYSKTDATGATLEISVWDSPTEQFLGGVCFDLSDVPIRDSPDSPLAPQWYRLEGGAAEQNAGRVSGDIQLSVWIGTQSDDAFPEAWSSDAPYVAHTRSKVYQSPKLWYLRVTVMEAQDLNLTPNLPPLTAPEIRVKVQLGFQSQRTRRGSMNHHSMSFHWHEDLLFVAGEPLEDSMVLLVEDRTTKEAALLGHVVIPLTSIEQRIDDRHVPAKWFPLEGGSYCGRVHLRLCLEGGYHVLDEAAHVCSDFRPTAKSLWKPPVGILELGILGARGLLPMKSKGPGKGSTDSYCVAKYGKKWVRTRTVTDSFDPRWNEQYTWQVYDPCTVLTVGVFDNWRMFADVAEEKPDCRIGKIRIRVSTLESNKIYTSSYPLLVLTRNGLKKMGEIELAVRFACPGFFPDTCAVYQQPLLPKMHYIRPLGVAQQEALRGAATKMVAQWLARSEPPMGHEVVRYMLDADSHAWSMRKSKANWFRIVAVLAWAVGLAKWLDDIRRWKNPVTTVLLHILYLVLVWYPDLIVPTGFLYVVLIGIWYFRFRPKIPAGMDTRLSQAEAVDPDELDEEFDTMPSSKPPDLVRVRYDRLRMLAARVQTVLGDFATQGERVQALVSWRDPRATKLFIGVCLVIAIILYSVPPKMVAVALGFYYLRHPMFRNPMPPASLNFFRRLPSLSDRLM