Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066124.t1 | XP_013467899.1 | 97.4 | 651 | 14 | 3 | 1 | 650 | 1 | 649 | 0.00E+00 | 1152.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066124.t1 | Q9SJ56 | 48.3 | 724 | 256 | 25 | 1 | 650 | 1 | 680 | 7.2e-145 | 515.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066124.t1 | A0A072VK10 | 97.4 | 651 | 14 | 3 | 1 | 650 | 1 | 649 | 0.0e+00 | 1152.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene066124.t1 | TF | HB-BELL |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene053494 | MS.gene066124 | 0.81866 | 1.75E-52 | -1.69E-46 |
MS.gene055701 | MS.gene066124 | 0.851645 | 7.76E-61 | -1.69E-46 |
MS.gene05595 | MS.gene066124 | 0.801071 | 1.07E-48 | -1.69E-46 |
MS.gene057156 | MS.gene066124 | -0.817041 | 4.05E-52 | -1.69E-46 |
MS.gene057396 | MS.gene066124 | 0.806812 | 6.86E-50 | -1.69E-46 |
MS.gene059609 | MS.gene066124 | 0.812005 | 5.27E-51 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066124.t1 | MTR_1g057790 | 97.849 | 651 | 11 | 3 | 1 | 650 | 1 | 649 | 0.0 | 1319 |
MS.gene066124.t1 | MTR_7g106320 | 64.841 | 694 | 166 | 23 | 1 | 650 | 1 | 660 | 0.0 | 782 |
MS.gene066124.t1 | MTR_4g051532 | 46.540 | 737 | 281 | 28 | 1 | 650 | 1 | 711 | 2.33e-165 | 490 |
MS.gene066124.t1 | MTR_1g023050 | 54.870 | 308 | 119 | 5 | 142 | 439 | 148 | 445 | 5.65e-100 | 318 |
MS.gene066124.t1 | MTR_3g112300 | 54.266 | 293 | 117 | 6 | 150 | 435 | 148 | 430 | 7.89e-95 | 302 |
MS.gene066124.t1 | MTR_3g112300 | 54.266 | 293 | 117 | 6 | 150 | 435 | 148 | 430 | 3.54e-94 | 302 |
MS.gene066124.t1 | MTR_5g018860 | 46.552 | 348 | 160 | 6 | 153 | 477 | 330 | 674 | 2.28e-88 | 291 |
MS.gene066124.t1 | MTR_8g078480 | 53.103 | 290 | 116 | 4 | 157 | 434 | 384 | 665 | 6.12e-87 | 290 |
MS.gene066124.t1 | MTR_8g098815 | 53.558 | 267 | 116 | 3 | 161 | 424 | 185 | 446 | 2.00e-79 | 264 |
MS.gene066124.t1 | MTR_3g112300 | 52.381 | 252 | 106 | 5 | 150 | 394 | 148 | 392 | 4.50e-77 | 251 |
MS.gene066124.t1 | MTR_3g112290 | 47.584 | 269 | 122 | 4 | 160 | 420 | 164 | 421 | 5.20e-72 | 239 |
MS.gene066124.t1 | MTR_4g019450 | 41.617 | 334 | 145 | 7 | 156 | 470 | 191 | 493 | 2.92e-70 | 239 |
MS.gene066124.t1 | MTR_7g065050 | 45.066 | 304 | 128 | 8 | 153 | 443 | 129 | 406 | 1.16e-67 | 230 |
MS.gene066124.t1 | MTR_2g095050 | 40.498 | 321 | 166 | 7 | 112 | 419 | 203 | 511 | 1.10e-65 | 227 |
MS.gene066124.t1 | MTR_3g112300 | 49.784 | 231 | 102 | 5 | 150 | 373 | 148 | 371 | 4.63e-64 | 216 |
MS.gene066124.t1 | MTR_1g016490 | 35.211 | 284 | 155 | 5 | 162 | 433 | 244 | 510 | 7.07e-49 | 179 |
MS.gene066124.t1 | MTR_7g114930 | 91.892 | 37 | 3 | 0 | 528 | 564 | 9 | 45 | 6.38e-17 | 75.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066124.t1 | AT2G35940 | 50.068 | 737 | 224 | 24 | 1 | 650 | 1 | 680 | 0.0 | 555 |
MS.gene066124.t1 | AT2G35940 | 50.068 | 737 | 224 | 24 | 1 | 650 | 1 | 680 | 0.0 | 555 |
MS.gene066124.t1 | AT2G35940 | 50.068 | 737 | 224 | 24 | 1 | 650 | 1 | 680 | 0.0 | 555 |
MS.gene066124.t1 | AT2G16400 | 54.082 | 294 | 115 | 4 | 144 | 435 | 97 | 372 | 2.68e-97 | 307 |
MS.gene066124.t1 | AT4G34610 | 51.543 | 324 | 118 | 7 | 124 | 429 | 94 | 396 | 2.41e-92 | 296 |
MS.gene066124.t1 | AT4G34610 | 51.543 | 324 | 118 | 7 | 124 | 429 | 94 | 396 | 2.41e-92 | 296 |
MS.gene066124.t1 | AT4G34610 | 51.543 | 324 | 118 | 7 | 124 | 429 | 94 | 396 | 2.41e-92 | 296 |
MS.gene066124.t1 | AT4G34610 | 51.543 | 324 | 118 | 7 | 124 | 429 | 94 | 396 | 2.41e-92 | 296 |
MS.gene066124.t1 | AT1G75410 | 52.921 | 291 | 122 | 5 | 156 | 442 | 162 | 441 | 1.21e-91 | 294 |
MS.gene066124.t1 | AT1G75410 | 52.921 | 291 | 122 | 5 | 156 | 442 | 162 | 441 | 1.21e-91 | 294 |
MS.gene066124.t1 | AT1G19700 | 56.679 | 277 | 106 | 7 | 152 | 421 | 156 | 425 | 4.83e-91 | 293 |
MS.gene066124.t1 | AT1G19700 | 56.679 | 277 | 106 | 7 | 152 | 421 | 156 | 425 | 4.83e-91 | 293 |
MS.gene066124.t1 | AT1G19700 | 56.679 | 277 | 106 | 7 | 152 | 421 | 156 | 425 | 4.83e-91 | 293 |
MS.gene066124.t1 | AT1G19700 | 56.679 | 277 | 106 | 7 | 152 | 421 | 156 | 425 | 4.83e-91 | 293 |
MS.gene066124.t1 | AT1G19700 | 56.679 | 277 | 106 | 7 | 152 | 421 | 156 | 425 | 4.83e-91 | 293 |
MS.gene066124.t1 | AT2G27220 | 47.093 | 344 | 138 | 8 | 163 | 496 | 78 | 387 | 5.87e-85 | 273 |
MS.gene066124.t1 | AT2G27220 | 47.093 | 344 | 138 | 8 | 163 | 496 | 78 | 387 | 5.87e-85 | 273 |
MS.gene066124.t1 | AT2G27220 | 44.751 | 362 | 138 | 9 | 163 | 496 | 78 | 405 | 4.28e-81 | 264 |
MS.gene066124.t1 | AT4G36870 | 50.000 | 296 | 126 | 5 | 161 | 443 | 312 | 598 | 3.36e-80 | 269 |
MS.gene066124.t1 | AT4G36870 | 50.000 | 296 | 126 | 5 | 161 | 443 | 312 | 598 | 3.36e-80 | 269 |
MS.gene066124.t1 | AT2G23760 | 51.673 | 269 | 112 | 4 | 155 | 414 | 232 | 491 | 8.25e-78 | 260 |
MS.gene066124.t1 | AT2G23760 | 51.673 | 269 | 112 | 4 | 155 | 414 | 232 | 491 | 8.25e-78 | 260 |
MS.gene066124.t1 | AT2G23760 | 51.673 | 269 | 112 | 4 | 155 | 414 | 232 | 491 | 8.25e-78 | 260 |
MS.gene066124.t1 | AT1G75410 | 53.498 | 243 | 98 | 5 | 156 | 394 | 162 | 393 | 9.95e-74 | 243 |
MS.gene066124.t1 | AT5G41410 | 45.985 | 274 | 132 | 3 | 164 | 423 | 196 | 467 | 1.27e-72 | 246 |
MS.gene066124.t1 | AT2G23760 | 43.302 | 321 | 112 | 5 | 155 | 414 | 232 | 543 | 5.65e-68 | 235 |
MS.gene066124.t1 | AT1G75430 | 42.123 | 292 | 148 | 7 | 155 | 438 | 10 | 288 | 7.78e-65 | 216 |
MS.gene066124.t1 | AT4G36870 | 49.180 | 244 | 106 | 4 | 161 | 395 | 312 | 546 | 1.03e-63 | 220 |
MS.gene066124.t1 | AT5G02030 | 40.979 | 327 | 153 | 6 | 100 | 417 | 123 | 418 | 1.05e-63 | 221 |
MS.gene066124.t1 | AT4G36870 | 48.760 | 242 | 106 | 4 | 161 | 393 | 312 | 544 | 1.56e-62 | 218 |
MS.gene066124.t1 | AT4G32980 | 36.728 | 324 | 169 | 8 | 119 | 426 | 147 | 450 | 1.38e-54 | 194 |
MS.gene066124.t1 | AT4G32980 | 36.728 | 324 | 169 | 8 | 119 | 426 | 147 | 450 | 1.38e-54 | 194 |
MS.gene066124.t1 | AT2G27990 | 37.117 | 326 | 158 | 7 | 107 | 419 | 205 | 496 | 1.96e-52 | 190 |
MS.gene066124.t1 | AT1G75430 | 37.885 | 227 | 125 | 6 | 155 | 373 | 10 | 228 | 6.08e-36 | 137 |
MS.gene066124.t1 | AT2G27990 | 30.357 | 280 | 148 | 7 | 107 | 373 | 205 | 450 | 3.50e-26 | 112 |
Find 169 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTTCAAACGGCTGTGTTTC+GGG | 0.133801 | 1.4:-47266717 | MS.gene066124:CDS |
GAACAAATTTCAATGAAATT+TGG | 0.179649 | 1.4:-47263954 | MS.gene066124:CDS |
GATTCACGCGCCGCTGAATT+AGG | 0.199035 | 1.4:+47266831 | None:intergenic |
TCTTATTCGCAGCTCTAATT+TGG | 0.208590 | 1.4:+47265009 | None:intergenic |
CCTCATTGTGACACATTATC+AGG | 0.219156 | 1.4:-47263765 | MS.gene066124:CDS |
TGCTTCAAACGGCTGTGTTT+CGG | 0.238102 | 1.4:-47266718 | MS.gene066124:CDS |
GTGGTGGAGGGAAGTGTTGC+CGG | 0.239922 | 1.4:+47267001 | None:intergenic |
GATGAAGTTGTTAATGTTAA+TGG | 0.243321 | 1.4:-47266639 | MS.gene066124:CDS |
TTCTTCCTAGTTGAATGTTT+TGG | 0.253546 | 1.4:+47263718 | None:intergenic |
TAAATGCTCGAGTTCGTCTT+TGG | 0.292125 | 1.4:-47264337 | MS.gene066124:CDS |
AATTGTGCGGCAAACCTCTT+TGG | 0.296812 | 1.4:+47263624 | None:intergenic |
TAATGTTAATGGTGGGATTA+AGG | 0.300957 | 1.4:-47266628 | MS.gene066124:CDS |
TAGAGCTGCGAATAAGAGTT+TGG | 0.301506 | 1.4:-47265003 | MS.gene066124:CDS |
ACTAATTTCATTGCTGGTTT+CGG | 0.310210 | 1.4:-47263885 | MS.gene066124:CDS |
AACCAAACTAATTTCATTGC+TGG | 0.316269 | 1.4:-47263891 | MS.gene066124:CDS |
AACCAGCAATGAAATTAGTT+TGG | 0.317050 | 1.4:+47263889 | None:intergenic |
ATTATTAGTTGTTGTTTCAT+TGG | 0.321824 | 1.4:+47263977 | None:intergenic |
CTGTTTCTGTTCTTCGTGCT+TGG | 0.327008 | 1.4:-47264836 | MS.gene066124:CDS |
AGTGTTGCCGGGGTGATTGC+CGG | 0.333797 | 1.4:+47267013 | None:intergenic |
TCTGGTGTTGTTGGTGGTGG+AGG | 0.335542 | 1.4:+47266988 | None:intergenic |
ATATGGTACAGGTTTCAAAT+TGG | 0.342374 | 1.4:-47264364 | MS.gene066124:intron |
CCGGCGTGTGGCGGCGGTTG+CGG | 0.342838 | 1.4:+47267059 | None:intergenic |
ACAAAGAGCTATTCAACAAT+TGG | 0.347219 | 1.4:-47264910 | MS.gene066124:CDS |
TGGTGGAGGGAAGTGTTGCC+GGG | 0.348095 | 1.4:+47267002 | None:intergenic |
GTGAATGTTAGAAACAATTC+AGG | 0.352767 | 1.4:-47264092 | MS.gene066124:CDS |
TTTGAACAAGTTGCAGGAAT+TGG | 0.356194 | 1.4:-47265110 | MS.gene066124:CDS |
TCCTCGTTTGAACAAGTTGC+AGG | 0.356397 | 1.4:-47265116 | MS.gene066124:CDS |
TAGAGATGGTTATTGTTTCA+TGG | 0.358531 | 1.4:-47263916 | MS.gene066124:CDS |
TTGTTTGGAATTGAAACTTT+TGG | 0.360991 | 1.4:+47264163 | None:intergenic |
CTTATTTATGCCACAAAATC+CGG | 0.365359 | 1.4:+47263597 | None:intergenic |
GTTGGTGGTGGTGATGGAAA+TGG | 0.367432 | 1.4:-47266525 | MS.gene066124:CDS |
GGAACTCTTTCTTGTGGAGT+TGG | 0.373552 | 1.4:+47264203 | None:intergenic |
AACCATAGGAATGTCTTGTT+TGG | 0.375205 | 1.4:+47264148 | None:intergenic |
TTTCTAACATTCACACCAAT+AGG | 0.376813 | 1.4:+47264101 | None:intergenic |
ACACCATCAACTTCACCTAT+TGG | 0.384849 | 1.4:-47264116 | MS.gene066124:CDS |
ATTAGCGAAACAAATGAGTT+TGG | 0.384850 | 1.4:-47263687 | MS.gene066124:CDS |
CTTTCGGGCAATCCTCTTTG+AGG | 0.389055 | 1.4:+47264861 | None:intergenic |
TGTTTAAAAGATGCAATTAC+CGG | 0.390768 | 1.4:-47265032 | MS.gene066124:CDS |
CAAAACAAACAGGACTTACT+AGG | 0.391251 | 1.4:-47264500 | MS.gene066124:CDS |
GGTTCTGTTGGTGGTGGTGA+TGG | 0.395350 | 1.4:-47266531 | MS.gene066124:CDS |
TCATGGTTCCTCGTTCGCTT+TGG | 0.399272 | 1.4:+47264029 | None:intergenic |
ATTCACGCGCCGCTGAATTA+GGG | 0.401306 | 1.4:+47266832 | None:intergenic |
CATGAGGTTTCTGCTTTGCA+TGG | 0.403905 | 1.4:-47266897 | MS.gene066124:CDS |
AAGAACAGAAACAGATCTTT+CGG | 0.408106 | 1.4:+47264845 | None:intergenic |
GGAGAAGGTGGTTCTGTTGG+TGG | 0.408233 | 1.4:-47266540 | MS.gene066124:CDS |
TTCAGCTTCACGGAACTTGA+TGG | 0.410535 | 1.4:-47264068 | MS.gene066124:CDS |
GTTTGCCGCACAATTGTTAC+CGG | 0.411095 | 1.4:-47263616 | MS.gene066124:CDS |
TTGGATTCTGTTTCCGAGGT+TGG | 0.416477 | 1.4:+47264182 | None:intergenic |
TCATTGGACTTCACATGATT+CGG | 0.418133 | 1.4:+47263993 | None:intergenic |
AGGAAATCACCATCTGCATT+TGG | 0.421394 | 1.4:+47265135 | None:intergenic |
GCCGCTGAATTAGGGTCGGC+GGG | 0.424159 | 1.4:+47266840 | None:intergenic |
AGCTTACATGCTCAAGGGTC+AGG | 0.425924 | 1.4:-47266780 | MS.gene066124:CDS |
AGTTCTGGTGTTGTTGGTGG+TGG | 0.426204 | 1.4:+47266985 | None:intergenic |
CGTGTTCCCATTGGTGGGTC+GGG | 0.428031 | 1.4:-47266747 | MS.gene066124:CDS |
TGAATCCACACGCGCTACTC+AGG | 0.434230 | 1.4:-47266814 | MS.gene066124:CDS |
AGTGGAGAAGGTGGTTCTGT+TGG | 0.435026 | 1.4:-47266543 | MS.gene066124:CDS |
TTGGGAGAAGATGATAGCTT+TGG | 0.441809 | 1.4:-47264984 | MS.gene066124:CDS |
CATGTGTTTGTCTGAATCCT+TGG | 0.446993 | 1.4:+47264527 | None:intergenic |
GAATCTTCAACTGCGGTTAG+TGG | 0.448461 | 1.4:-47266561 | MS.gene066124:CDS |
CACATGCTTGCAAAACAAAC+AGG | 0.449703 | 1.4:-47264510 | MS.gene066124:CDS |
CTGGTGTTGTTGGTGGTGGA+GGG | 0.450438 | 1.4:+47266989 | None:intergenic |
AGAGCTGCGAATAAGAGTTT+GGG | 0.451616 | 1.4:-47265002 | MS.gene066124:CDS |
AGCTTTGGTGGCAAAATTGA+AGG | 0.452290 | 1.4:-47264969 | MS.gene066124:CDS |
AATCTTCCGATTTCCTCCAT+TGG | 0.452740 | 1.4:+47263855 | None:intergenic |
AGAACAGAAACAGATCTTTC+GGG | 0.455936 | 1.4:+47264846 | None:intergenic |
TTGGTGGTGGTGATGGAAAT+GGG | 0.457024 | 1.4:-47266524 | MS.gene066124:CDS |
GAGGTCTCCAAGCATTATGA+TGG | 0.458928 | 1.4:+47264880 | None:intergenic |
AGAGATGGTTATTGTTTCAT+GGG | 0.464621 | 1.4:-47263915 | MS.gene066124:CDS |
GGAGAAGATGATAGCTTTGG+TGG | 0.464797 | 1.4:-47264981 | MS.gene066124:CDS |
TGGAGATTGTTTGTAGCGCT+AGG | 0.469541 | 1.4:+47265066 | None:intergenic |
AATGGTGTTTCACTCACTCT+TGG | 0.469626 | 1.4:-47263792 | MS.gene066124:CDS |
TTTGCTTGATTTGTTGTCCT+CGG | 0.470961 | 1.4:+47264256 | None:intergenic |
ATGTACATTTCCTCCACCAT+TGG | 0.475080 | 1.4:+47264311 | None:intergenic |
CATTCAACTAGGAAGAAGAT+TGG | 0.477777 | 1.4:-47263712 | MS.gene066124:CDS |
GCGTGTTCCCATTGGTGGGT+CGG | 0.478334 | 1.4:-47266748 | MS.gene066124:CDS |
CAAAGAGCTATTCAACAATT+GGG | 0.478974 | 1.4:-47264909 | MS.gene066124:CDS |
GAGATAAGTTCTGGTGTTGT+TGG | 0.480326 | 1.4:+47266979 | None:intergenic |
CAATATCCAATGGAGGAAAT+CGG | 0.481438 | 1.4:-47263861 | MS.gene066124:CDS |
AGGTTACCGGCGTGTGGCGG+CGG | 0.487521 | 1.4:+47267053 | None:intergenic |
GACGAACCCGACCCACCAAT+GGG | 0.487772 | 1.4:+47266741 | None:intergenic |
GACGCGCGTGTTCCCATTGG+TGG | 0.492130 | 1.4:-47266753 | MS.gene066124:CDS |
TCGGTGATTGAAGAATTTCA+TGG | 0.493060 | 1.4:+47264012 | None:intergenic |
GAAGGTGGTTCTGTTGGTGG+TGG | 0.495223 | 1.4:-47266537 | MS.gene066124:CDS |
CCGCAACCGCCGCCACACGC+CGG | 0.496101 | 1.4:-47267059 | MS.gene066124:CDS |
TGGCGGCGGTTGCGGCGCGT+CGG | 0.498231 | 1.4:+47267067 | None:intergenic |
GTGGCAAAATTGAAGGGTCT+AGG | 0.499962 | 1.4:-47264962 | MS.gene066124:CDS |
CTGATTGTTCTGCCGAGAGC+GGG | 0.508560 | 1.4:+47266931 | None:intergenic |
GAATGATCCATCATAATGCT+TGG | 0.508715 | 1.4:-47264887 | MS.gene066124:CDS |
TTCCAAACAAGACATTCCTA+TGG | 0.509814 | 1.4:-47264150 | MS.gene066124:CDS |
AATGTACATGGAAGAGATGA+AGG | 0.518111 | 1.4:-47264297 | MS.gene066124:CDS |
CATAATAATTCAGAAATCCA+AGG | 0.518498 | 1.4:-47267149 | MS.gene066124:CDS |
CAATTCAGGATTCAGCTTCA+CGG | 0.521074 | 1.4:-47264078 | MS.gene066124:CDS |
CGCCGCTGAATTAGGGTCGG+CGG | 0.525952 | 1.4:+47266839 | None:intergenic |
CGCGCATGCGGTACAACATG+TGG | 0.526523 | 1.4:-47266866 | MS.gene066124:CDS |
TCATTAAGCTTACATGCTCA+AGG | 0.530266 | 1.4:-47266786 | MS.gene066124:CDS |
TCATGAAAATGAGTGTTTGA+AGG | 0.530375 | 1.4:+47267114 | None:intergenic |
GAATCCACACGCGCTACTCA+GGG | 0.533677 | 1.4:-47266813 | MS.gene066124:CDS |
AGACGAACCCGACCCACCAA+TGG | 0.537440 | 1.4:+47266740 | None:intergenic |
ATGTGTTTGTCTGAATCCTT+GGG | 0.538305 | 1.4:+47264528 | None:intergenic |
ATAAGTTCTGGTGTTGTTGG+TGG | 0.538740 | 1.4:+47266982 | None:intergenic |
GTTTGTCGGAGTCCCGCTCT+CGG | 0.541545 | 1.4:-47266943 | MS.gene066124:CDS |
AACAGGACTTACTAGGAGCC+AGG | 0.541927 | 1.4:-47264493 | MS.gene066124:intron |
TTGTAGCGCTAGGGCAGTGT+AGG | 0.542393 | 1.4:+47265076 | None:intergenic |
TCAACTGCGGTTAGTGGAGA+AGG | 0.547613 | 1.4:-47266555 | MS.gene066124:CDS |
TTATTATTACCTGAAAACCT+TGG | 0.548405 | 1.4:+47263813 | None:intergenic |
ATTCGCAGCTCTAATTTGGC+CGG | 0.548463 | 1.4:+47265013 | None:intergenic |
GTTAATTAACATGCTTGATG+AGG | 0.549695 | 1.4:-47266442 | MS.gene066124:intron |
CACGCGCCACCACAGTTTGT+CGG | 0.549865 | 1.4:-47266957 | MS.gene066124:CDS |
AACTCAGCCGGCAATCACCC+CGG | 0.551055 | 1.4:-47267020 | MS.gene066124:CDS |
TCGGGTTCGTCTGCTTCAAA+CGG | 0.552442 | 1.4:-47266729 | MS.gene066124:CDS |
GGAGATTGTTTGTAGCGCTA+GGG | 0.553654 | 1.4:+47265067 | None:intergenic |
GTGGCGCGTGAGATAAGTTC+TGG | 0.557053 | 1.4:+47266970 | None:intergenic |
AGTTCGTCTTTGGAAACCAA+TGG | 0.560987 | 1.4:-47264327 | MS.gene066124:CDS |
GATGATAGACAAAGTAGAGA+TGG | 0.562540 | 1.4:-47263930 | MS.gene066124:CDS |
ACACCAATAGGTGAAGTTGA+TGG | 0.562831 | 1.4:+47264113 | None:intergenic |
GAGGACGCGCGTGTTCCCAT+TGG | 0.566554 | 1.4:-47266756 | MS.gene066124:CDS |
ATGGCTTCCCACCGCGCATG+CGG | 0.566720 | 1.4:-47266878 | MS.gene066124:CDS |
GAGTAATTGATGTAACCTGA+TGG | 0.567818 | 1.4:+47267089 | None:intergenic |
GAAGTTGTTAATGTTAATGG+TGG | 0.567999 | 1.4:-47266636 | MS.gene066124:CDS |
CTTCAAACGGCTGTGTTTCG+GGG | 0.569323 | 1.4:-47266716 | MS.gene066124:CDS |
TCTTTGGAAACCAATGGTGG+AGG | 0.574109 | 1.4:-47264321 | MS.gene066124:CDS |
GAAGGCCGTCAGAACCACCT+TGG | 0.574186 | 1.4:+47267132 | None:intergenic |
CAGCCCCTGAGTAGCGCGTG+TGG | 0.574542 | 1.4:+47266809 | None:intergenic |
ATGAAGGATCAAGAGCTGAA+TGG | 0.575119 | 1.4:-47264281 | MS.gene066124:CDS |
GAAATCCAAGGTGGTTCTGA+CGG | 0.578996 | 1.4:-47267137 | MS.gene066124:CDS |
TGTTGTACCGCATGCGCGGT+GGG | 0.579687 | 1.4:+47266871 | None:intergenic |
CCAAACCAAAACATTCAACT+AGG | 0.581717 | 1.4:-47263723 | MS.gene066124:CDS |
GTTTGATTTCAGTTATCCCA+AGG | 0.585733 | 1.4:-47264544 | MS.gene066124:intron |
ACGCGCGTGTTCCCATTGGT+GGG | 0.596736 | 1.4:-47266752 | MS.gene066124:CDS |
AAGCAAGTCCAAAGCGAACG+AGG | 0.604196 | 1.4:-47264037 | MS.gene066124:CDS |
AATGGTGGAGGAAATGTACA+TGG | 0.609719 | 1.4:-47264309 | MS.gene066124:CDS |
TGTTGGAGAATCTTCAACTG+CGG | 0.611838 | 1.4:-47266568 | MS.gene066124:CDS |
CCCCGCCGACCCTAATTCAG+CGG | 0.612266 | 1.4:-47266841 | MS.gene066124:CDS |
TGGTTTCGGTCAATATCCAA+TGG | 0.615136 | 1.4:-47263871 | MS.gene066124:CDS |
ATGTTGTACCGCATGCGCGG+TGG | 0.615571 | 1.4:+47266870 | None:intergenic |
TCGTCTTTGGAAACCAATGG+TGG | 0.617524 | 1.4:-47264324 | MS.gene066124:CDS |
CACATGTTGTACCGCATGCG+CGG | 0.618509 | 1.4:+47266867 | None:intergenic |
TCGGCAGAACAATCAGTACA+TGG | 0.621271 | 1.4:-47266924 | MS.gene066124:CDS |
TTTCATCGAAGGATCGTCAT+CGG | 0.623127 | 1.4:+47264229 | None:intergenic |
GAGGTTGGAACTCTTTCTTG+TGG | 0.623921 | 1.4:+47264197 | None:intergenic |
GCTTTGGTGGCAAAATTGAA+GGG | 0.625009 | 1.4:-47264968 | MS.gene066124:CDS |
AAGTTGTTAATGTTAATGGT+GGG | 0.628751 | 1.4:-47266635 | MS.gene066124:CDS |
GCAAAGCAGAAACCTCATGA+TGG | 0.629561 | 1.4:+47266901 | None:intergenic |
ATATCACAACCAAATGCAGA+TGG | 0.632389 | 1.4:-47265144 | MS.gene066124:CDS |
ACGCGCCGCTGAATTAGGGT+CGG | 0.633078 | 1.4:+47266836 | None:intergenic |
CATTAAGCTTACATGCTCAA+GGG | 0.634278 | 1.4:-47266785 | MS.gene066124:CDS |
ATCAGTACATGGCCATCATG+AGG | 0.634995 | 1.4:-47266913 | MS.gene066124:CDS |
ATGCGGAACAATTTGCACCA+AGG | 0.636094 | 1.4:-47263830 | MS.gene066124:CDS |
AGCGGGACTCCGACAAACTG+TGG | 0.637468 | 1.4:+47266948 | None:intergenic |
TCCTGCAACTTGTTCAAACG+AGG | 0.638911 | 1.4:+47265115 | None:intergenic |
TCAACATGCAGAATCCAAAG+AGG | 0.639986 | 1.4:-47263638 | MS.gene066124:CDS |
ACTGATTGTTCTGCCGAGAG+CGG | 0.645804 | 1.4:+47266930 | None:intergenic |
GGTGTTGAAACTGAAACCAT+AGG | 0.645975 | 1.4:+47264134 | None:intergenic |
ACAAGGTTACCGGCGTGTGG+CGG | 0.649540 | 1.4:+47267050 | None:intergenic |
AAAACAAGGTTACCGGCGTG+TGG | 0.650178 | 1.4:+47267047 | None:intergenic |
ACTGCGGTTAGTGGAGAAGG+TGG | 0.650559 | 1.4:-47266552 | MS.gene066124:CDS |
GGTGGAGGGAAGTGTTGCCG+GGG | 0.656423 | 1.4:+47267003 | None:intergenic |
TCAAGAGCTGAATGGTTCCG+AGG | 0.663324 | 1.4:-47264273 | MS.gene066124:CDS |
GGAAATCGGAAGATTTGATG+CGG | 0.664371 | 1.4:-47263847 | MS.gene066124:CDS |
CCTGATAATGTGTCACAATG+AGG | 0.665244 | 1.4:+47263765 | None:intergenic |
ACATGCTCAAGGGTCAGGCG+AGG | 0.668836 | 1.4:-47266775 | MS.gene066124:CDS |
ACAAGAAAGAGTTCCAACCT+CGG | 0.675024 | 1.4:-47264195 | MS.gene066124:CDS |
AAAATCCGGTAACAATTGTG+CGG | 0.678724 | 1.4:+47263611 | None:intergenic |
GGGACTCCGACAAACTGTGG+TGG | 0.685917 | 1.4:+47266951 | None:intergenic |
AATGCTTGGAGACCTCAAAG+AGG | 0.697679 | 1.4:-47264873 | MS.gene066124:CDS |
TTTCGGTCAATATCCAATGG+AGG | 0.697787 | 1.4:-47263868 | MS.gene066124:CDS |
AATCCACACGCGCTACTCAG+GGG | 0.701184 | 1.4:-47266812 | MS.gene066124:CDS |
AATAATTCAGAAATCCAAGG+TGG | 0.720775 | 1.4:-47267146 | MS.gene066124:CDS |
CCGCTGAATTAGGGTCGGCG+GGG | 0.731123 | 1.4:+47266841 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAGGATAAAAAAAA+CGG | + | chr1.4:47265026-47265045 | None:intergenic | 10.0% |
!! | TCAAAAAAAAAAACAATATT+AGG | + | chr1.4:47264415-47264434 | None:intergenic | 10.0% |
!! | TTAAAAAATTACTAAATTGA+CGG | + | chr1.4:47266094-47266113 | None:intergenic | 10.0% |
!!! | AAATCTAAAAACTAAAATTT+TGG | + | chr1.4:47265346-47265365 | None:intergenic | 10.0% |
!!! | ACTCAAATTTATTTAATTTT+TGG | - | chr1.4:47264724-47264743 | MS.gene066124:intron | 10.0% |
!!! | TAAATTAACATTTTAGTTTT+TGG | - | chr1.4:47266024-47266043 | MS.gene066124:intron | 10.0% |
!!! | TTGTTTTCTTAAAAAAAAAA+AGG | + | chr1.4:47265039-47265058 | None:intergenic | 10.0% |
!!! | TTTTTTATCCTTTTTTTTTA+AGG | - | chr1.4:47265129-47265148 | MS.gene066124:CDS | 10.0% |
!! | AATTGTTTCCTTAAAAAAAA+AGG | + | chr1.4:47265140-47265159 | None:intergenic | 15.0% |
!! | ATACTAAAAATGAATTAATG+TGG | - | chr1.4:47265553-47265572 | MS.gene066124:intron | 15.0% |
!! | GTTTCCTTAAAAAAAAAAAA+CGG | + | chr1.4:47265238-47265257 | None:intergenic | 15.0% |
!!! | AGAATTTATGTTTTTTAGAA+TGG | - | chr1.4:47264622-47264641 | MS.gene066124:intron | 15.0% |
!!! | GAGTTAATTAAATTTAGTTT+TGG | - | chr1.4:47264355-47264374 | MS.gene066124:CDS | 15.0% |
!!! | TAAAAACTAAAATTTTGGAA+AGG | + | chr1.4:47265341-47265360 | None:intergenic | 15.0% |
!!! | TCTATCATTTTAAAATTCTA+AGG | - | chr1.4:47265380-47265399 | MS.gene066124:intron | 15.0% |
!!! | TTAAAAAAAAAAAACGGATT+CGG | + | chr1.4:47265232-47265251 | None:intergenic | 15.0% |
!!! | TTACTTTTTAAGTATGATTA+AGG | - | chr1.4:47264590-47264609 | MS.gene066124:intron | 15.0% |
!!! | TTTTATGATACTATTAGAAA+AGG | - | chr1.4:47265994-47266013 | MS.gene066124:intron | 15.0% |
!! | AAAAAAAAATATGCAAGATC+CGG | - | chr1.4:47264914-47264933 | MS.gene066124:CDS | 20.0% |
!! | AATTTGATAGGAACTAAATT+TGG | + | chr1.4:47264451-47264470 | None:intergenic | 20.0% |
!! | GAACAAATTTCAATGAAATT+TGG | - | chr1.4:47266812-47266831 | MS.gene066124:CDS | 20.0% |
!! | TATTGATCATGTTAACAATA+TGG | - | chr1.4:47266385-47266404 | MS.gene066124:intron | 20.0% |
!! | TTAATTCATGTTTGATTCTA+TGG | + | chr1.4:47264832-47264851 | None:intergenic | 20.0% |
!!! | ATTATTAGTTGTTGTTTCAT+TGG | + | chr1.4:47266792-47266811 | None:intergenic | 20.0% |
!!! | ATTTCTTGCAAATACTTTTA+TGG | + | chr1.4:47265438-47265457 | None:intergenic | 20.0% |
!!! | GAATCCGTTTTTTTTTTTTA+AGG | - | chr1.4:47265231-47265250 | MS.gene066124:intron | 20.0% |
!!! | TGTTCATTGGTTTTTTTTTT+TGG | + | chr1.4:47265200-47265219 | None:intergenic | 20.0% |
!!! | TTTTTTTTTTTTGTGATGGT+CGG | + | chr1.4:47264978-47264997 | None:intergenic | 20.0% |
! | AAAAAAAATATGCAAGATCC+GGG | - | chr1.4:47264915-47264934 | MS.gene066124:CDS | 25.0% |
! | AAGTTGTTAATGTTAATGGT+GGG | - | chr1.4:47264131-47264150 | MS.gene066124:CDS | 25.0% |
! | ATGAATTAATGTGGTTTCTT+TGG | - | chr1.4:47265562-47265581 | MS.gene066124:intron | 25.0% |
! | CATAATAATTCAGAAATCCA+AGG | - | chr1.4:47263617-47263636 | MS.gene066124:CDS | 25.0% |
! | CTTGAAAGAACAAATTTGAT+AGG | + | chr1.4:47264463-47264482 | None:intergenic | 25.0% |
! | GATGAAGTTGTTAATGTTAA+TGG | - | chr1.4:47264127-47264146 | MS.gene066124:CDS | 25.0% |
! | TGTTTAAAAGATGCAATTAC+CGG | - | chr1.4:47265734-47265753 | MS.gene066124:intron | 25.0% |
! | TTATTATTACCTGAAAACCT+TGG | + | chr1.4:47266956-47266975 | None:intergenic | 25.0% |
! | TTTGAGAAAAATAAGGTTGT+TGG | - | chr1.4:47264181-47264200 | MS.gene066124:CDS | 25.0% |
!! | AAGGATAAAAAAAACGGATT+CGG | + | chr1.4:47265020-47265039 | None:intergenic | 25.0% |
!! | GAATGGTTTTTATGCAAAAT+AGG | - | chr1.4:47264670-47264689 | MS.gene066124:intron | 25.0% |
!! | GATATATTCAGGTCTTTTAT+TGG | - | chr1.4:47266178-47266197 | MS.gene066124:intron | 25.0% |
!! | TTTTAAACATCGAAATTGCT+TGG | + | chr1.4:47265723-47265742 | None:intergenic | 25.0% |
!!! | ACTAAAATTTTGGAAAGGAA+AGG | + | chr1.4:47265336-47265355 | None:intergenic | 25.0% |
!!! | AGGTTTTCAGGTAATAATAA+TGG | - | chr1.4:47266956-47266975 | MS.gene066124:CDS | 25.0% |
!!! | ATTGGTAATTTTTTTTGTGG+TGG | + | chr1.4:47265098-47265117 | None:intergenic | 25.0% |
!!! | GAAGAGTTTTGAGAAAAATA+AGG | - | chr1.4:47264174-47264193 | MS.gene066124:CDS | 25.0% |
!!! | TCATTGGTTTTTTTTTTTGG+TGG | + | chr1.4:47265197-47265216 | None:intergenic | 25.0% |
!!! | TGGGTTTTTTTTTTTTGTGA+TGG | + | chr1.4:47264982-47265001 | None:intergenic | 25.0% |
!!! | TGTTTTTTTGACAGATAGAA+TGG | - | chr1.4:47264653-47264672 | MS.gene066124:intron | 25.0% |
!!! | TTGTTTGGAATTGAAACTTT+TGG | + | chr1.4:47266606-47266625 | None:intergenic | 25.0% |
!!! | TTTTTTTTTTTGTGATGGTC+GGG | + | chr1.4:47264977-47264996 | None:intergenic | 25.0% |
AAAAAAATATGCAAGATCCG+GGG | - | chr1.4:47264916-47264935 | MS.gene066124:CDS | 30.0% | |
AACCAAACTAATTTCATTGC+TGG | - | chr1.4:47266875-47266894 | MS.gene066124:CDS | 30.0% | |
AACCAGCAATGAAATTAGTT+TGG | + | chr1.4:47266880-47266899 | None:intergenic | 30.0% | |
AAGAACAGAAACAGATCTTT+CGG | + | chr1.4:47265924-47265943 | None:intergenic | 30.0% | |
AATAATTCAGAAATCCAAGG+TGG | - | chr1.4:47263620-47263639 | MS.gene066124:CDS | 30.0% | |
ACAAAGAGCTATTCAACAAT+TGG | - | chr1.4:47265856-47265875 | MS.gene066124:intron | 30.0% | |
AGAGATGGTTATTGTTTCAT+GGG | - | chr1.4:47266851-47266870 | MS.gene066124:CDS | 30.0% | |
AGTTGGTCATGGTTTAATAA+AGG | + | chr1.4:47264855-47264874 | None:intergenic | 30.0% | |
ATATGGTACAGGTTTCAAAT+TGG | - | chr1.4:47266402-47266421 | MS.gene066124:intron | 30.0% | |
ATTAGCGAAACAAATGAGTT+TGG | - | chr1.4:47267079-47267098 | MS.gene066124:CDS | 30.0% | |
ATTCATGTTTGATTCTATGG+TGG | + | chr1.4:47264829-47264848 | None:intergenic | 30.0% | |
CAAAGAGCTATTCAACAATT+GGG | - | chr1.4:47265857-47265876 | MS.gene066124:intron | 30.0% | |
CACTTAATAAAGAAGTAAGG+AGG | + | chr1.4:47266302-47266321 | None:intergenic | 30.0% | |
CGACACTTAATAAAGAAGTA+AGG | + | chr1.4:47266305-47266324 | None:intergenic | 30.0% | |
GAAGTTGTTAATGTTAATGG+TGG | - | chr1.4:47264130-47264149 | MS.gene066124:CDS | 30.0% | |
GTGAATGTTAGAAACAATTC+AGG | - | chr1.4:47266674-47266693 | MS.gene066124:CDS | 30.0% | |
GTTAATTAACATGCTTGATG+AGG | - | chr1.4:47264324-47264343 | MS.gene066124:CDS | 30.0% | |
TAGAGATGGTTATTGTTTCA+TGG | - | chr1.4:47266850-47266869 | MS.gene066124:CDS | 30.0% | |
TCATGAAAATGAGTGTTTGA+AGG | + | chr1.4:47263655-47263674 | None:intergenic | 30.0% | |
TCATGTTAACAATATGGTAC+AGG | - | chr1.4:47266391-47266410 | MS.gene066124:intron | 30.0% | |
TCATTGAAGTCGATATATTC+AGG | - | chr1.4:47266167-47266186 | MS.gene066124:intron | 30.0% | |
TTTCTAACATTCACACCAAT+AGG | + | chr1.4:47266668-47266687 | None:intergenic | 30.0% | |
! | AAAAAAAAACGGATTCGGAT+TGG | + | chr1.4:47265227-47265246 | None:intergenic | 30.0% |
! | AAAAGTATAGCGAGTACTTA+CGG | + | chr1.4:47265977-47265996 | None:intergenic | 30.0% |
! | GTTCTTTCAAGTAATTGAGT+TGG | - | chr1.4:47264472-47264491 | MS.gene066124:intron | 30.0% |
! | TAAAAAAAACGGATTCGGAT+TGG | + | chr1.4:47265015-47265034 | None:intergenic | 30.0% |
! | TAATGTTAATGGTGGGATTA+AGG | - | chr1.4:47264138-47264157 | MS.gene066124:CDS | 30.0% |
! | TTCTTCCTAGTTGAATGTTT+TGG | + | chr1.4:47267051-47267070 | None:intergenic | 30.0% |
!! | AAAATTTTGGAAAGGAAAGG+AGG | + | chr1.4:47265333-47265352 | None:intergenic | 30.0% |
!! | ACTAATTTCATTGCTGGTTT+CGG | - | chr1.4:47266881-47266900 | MS.gene066124:CDS | 30.0% |
!!! | CGGATTGGTAATTTTTTTTG+TGG | + | chr1.4:47265101-47265120 | None:intergenic | 30.0% |
!!! | GTTTTTGGAATTGAAAGAGT+CGG | - | chr1.4:47266039-47266058 | MS.gene066124:intron | 30.0% |
!!! | TTTGGATTGTTTTGGTTTGA+AGG | - | chr1.4:47265580-47265599 | MS.gene066124:intron | 30.0% |
!!! | TTTTTTTTTTGTGATGGTCG+GGG | + | chr1.4:47264976-47264995 | None:intergenic | 30.0% |
AAAATCCGGTAACAATTGTG+CGG | + | chr1.4:47267158-47267177 | None:intergenic | 35.0% | |
AAACAATTACCAATCCTGCA+AGG | - | chr1.4:47265053-47265072 | MS.gene066124:CDS | 35.0% | |
AATGTACATGGAAGAGATGA+AGG | - | chr1.4:47266469-47266488 | MS.gene066124:CDS | 35.0% | |
ACGGACGTTAAACTATTCAA+AGG | + | chr1.4:47266075-47266094 | None:intergenic | 35.0% | |
AGAACAGAAACAGATCTTTC+GGG | + | chr1.4:47265923-47265942 | None:intergenic | 35.0% | |
ATATCACAACCAAATGCAGA+TGG | - | chr1.4:47265622-47265641 | MS.gene066124:intron | 35.0% | |
ATGTGTTTGTCTGAATCCTT+GGG | + | chr1.4:47266241-47266260 | None:intergenic | 35.0% | |
CAAAACAAACAGGACTTACT+AGG | - | chr1.4:47266266-47266285 | MS.gene066124:intron | 35.0% | |
CAATATCCAATGGAGGAAAT+CGG | - | chr1.4:47266905-47266924 | MS.gene066124:CDS | 35.0% | |
CATTAAGCTTACATGCTCAA+GGG | - | chr1.4:47263981-47264000 | MS.gene066124:CDS | 35.0% | |
CATTCAACTAGGAAGAAGAT+TGG | - | chr1.4:47267054-47267073 | MS.gene066124:CDS | 35.0% | |
CCAAACCAAAACATTCAACT+AGG | - | chr1.4:47267043-47267062 | MS.gene066124:CDS | 35.0% | |
GAATGATCCATCATAATGCT+TGG | - | chr1.4:47265879-47265898 | MS.gene066124:intron | 35.0% | |
GAGTAATTGATGTAACCTGA+TGG | + | chr1.4:47263680-47263699 | None:intergenic | 35.0% | |
GATGATAGACAAAGTAGAGA+TGG | - | chr1.4:47266836-47266855 | MS.gene066124:CDS | 35.0% | |
GTTGAGAAAAACAAGGTTAC+CGG | + | chr1.4:47263729-47263748 | None:intergenic | 35.0% | |
TCATTAAGCTTACATGCTCA+AGG | - | chr1.4:47263980-47263999 | MS.gene066124:CDS | 35.0% | |
TCATTGGACTTCACATGATT+CGG | + | chr1.4:47266776-47266795 | None:intergenic | 35.0% | |
TCGGTGATTGAAGAATTTCA+TGG | + | chr1.4:47266757-47266776 | None:intergenic | 35.0% | |
TGTGCTAGTAACAAGTGAAA+TGG | - | chr1.4:47265301-47265320 | MS.gene066124:intron | 35.0% | |
TTCCAAACAAGACATTCCTA+TGG | - | chr1.4:47266616-47266635 | MS.gene066124:CDS | 35.0% | |
TTTGAACAAGTTGCAGGAAT+TGG | - | chr1.4:47265656-47265675 | MS.gene066124:intron | 35.0% | |
! | AACCATAGGAATGTCTTGTT+TGG | + | chr1.4:47266621-47266640 | None:intergenic | 35.0% |
! | ACAATTGTTACCGGATTTTG+TGG | - | chr1.4:47267159-47267178 | MS.gene066124:CDS | 35.0% |
! | CTCATTTTCATGAATCCATC+AGG | - | chr1.4:47263662-47263681 | MS.gene066124:CDS | 35.0% |
! | GTGGTTTCTTTGGATTGTTT+TGG | - | chr1.4:47265572-47265591 | MS.gene066124:intron | 35.0% |
! | GTTTGATTTCAGTTATCCCA+AGG | - | chr1.4:47266222-47266241 | MS.gene066124:intron | 35.0% |
! | TCTTATTCGCAGCTCTAATT+TGG | + | chr1.4:47265760-47265779 | None:intergenic | 35.0% |
!! | CAAGTAATTGAGTTGGTAAC+TGG | - | chr1.4:47264479-47264498 | MS.gene066124:intron | 35.0% |
!! | TCGGATTGGTAATTGTTCAT+GGG | + | chr1.4:47265001-47265020 | None:intergenic | 35.0% |
!! | TCGGATTGGTAATTGTTCAT+TGG | + | chr1.4:47265001-47265020 | None:intergenic | 35.0% |
!! | TTCGGATTGGTAATTGTTCA+TGG | + | chr1.4:47265002-47265021 | None:intergenic | 35.0% |
!! | TTTGCTTGATTTGTTGTCCT+CGG | + | chr1.4:47266513-47266532 | None:intergenic | 35.0% |
!!! | AATTTTTTTTGTGGTGGCTG+AGG | + | chr1.4:47265092-47265111 | None:intergenic | 35.0% |
!!! | CCTAGTTGAATGTTTTGGTT+TGG | + | chr1.4:47267046-47267065 | None:intergenic | 35.0% |
!!! | TGGTTTTTTTTTTTGGTGGC+CGG | + | chr1.4:47265193-47265212 | None:intergenic | 35.0% |
AATCTTCCGATTTCCTCCAT+TGG | + | chr1.4:47266914-47266933 | None:intergenic | 40.0% | |
AATGGTGTTTCACTCACTCT+TGG | - | chr1.4:47266974-47266993 | MS.gene066124:CDS | 40.0% | |
ACAAGAAAGAGTTCCAACCT+CGG | - | chr1.4:47266571-47266590 | MS.gene066124:CDS | 40.0% | |
ACACCAATAGGTGAAGTTGA+TGG | + | chr1.4:47266656-47266675 | None:intergenic | 40.0% | |
ACACCATCAACTTCACCTAT+TGG | - | chr1.4:47266650-47266669 | MS.gene066124:CDS | 40.0% | |
AGAGCTGCGAATAAGAGTTT+GGG | - | chr1.4:47265764-47265783 | MS.gene066124:intron | 40.0% | |
AGGAAATCACCATCTGCATT+TGG | + | chr1.4:47265634-47265653 | None:intergenic | 40.0% | |
ATGAAGGATCAAGAGCTGAA+TGG | - | chr1.4:47266485-47266504 | MS.gene066124:CDS | 40.0% | |
ATGCTCGCACTCGTTATTAA+AGG | + | chr1.4:47266333-47266352 | None:intergenic | 40.0% | |
ATGTACATTTCCTCCACCAT+TGG | + | chr1.4:47266458-47266477 | None:intergenic | 40.0% | |
CAATTCAGGATTCAGCTTCA+CGG | - | chr1.4:47266688-47266707 | MS.gene066124:CDS | 40.0% | |
CACATGCTTGCAAAACAAAC+AGG | - | chr1.4:47266256-47266275 | MS.gene066124:intron | 40.0% | |
CATGTGTTTGTCTGAATCCT+TGG | + | chr1.4:47266242-47266261 | None:intergenic | 40.0% | |
CCTCATTGTGACACATTATC+AGG | - | chr1.4:47267001-47267020 | MS.gene066124:CDS | 40.0% | |
GGAAATCGGAAGATTTGATG+CGG | - | chr1.4:47266919-47266938 | MS.gene066124:CDS | 40.0% | |
GTTGTGATCACTACTAGGAT+TGG | + | chr1.4:47265266-47265285 | None:intergenic | 40.0% | |
TAAATGCTCGAGTTCGTCTT+TGG | - | chr1.4:47266429-47266448 | MS.gene066124:intron | 40.0% | |
TAGAGCTGCGAATAAGAGTT+TGG | - | chr1.4:47265763-47265782 | MS.gene066124:intron | 40.0% | |
TCAACATGCAGAATCCAAAG+AGG | - | chr1.4:47267128-47267147 | MS.gene066124:CDS | 40.0% | |
TGGTTTCGGTCAATATCCAA+TGG | - | chr1.4:47266895-47266914 | MS.gene066124:CDS | 40.0% | |
TGTGAGTTGTGATCACTACT+AGG | + | chr1.4:47265271-47265290 | None:intergenic | 40.0% | |
TGTTGGAGAATCTTCAACTG+CGG | - | chr1.4:47264198-47264217 | MS.gene066124:CDS | 40.0% | |
TTGGGAGAAGATGATAGCTT+TGG | - | chr1.4:47265782-47265801 | MS.gene066124:intron | 40.0% | |
TTTCATCGAAGGATCGTCAT+CGG | + | chr1.4:47266540-47266559 | None:intergenic | 40.0% | |
TTTCGGTCAATATCCAATGG+AGG | - | chr1.4:47266898-47266917 | MS.gene066124:CDS | 40.0% | |
! | AATGGTGGAGGAAATGTACA+TGG | - | chr1.4:47266457-47266476 | MS.gene066124:CDS | 40.0% |
! | ACTTTTGGATTCTGTTTCCG+AGG | + | chr1.4:47266591-47266610 | None:intergenic | 40.0% |
! | AGCTTTGGTGGCAAAATTGA+AGG | - | chr1.4:47265797-47265816 | MS.gene066124:intron | 40.0% |
! | AGTTCGTCTTTGGAAACCAA+TGG | - | chr1.4:47266439-47266458 | MS.gene066124:intron | 40.0% |
! | CAATTTGCACCAAGGTTTTC+AGG | - | chr1.4:47266944-47266963 | MS.gene066124:CDS | 40.0% |
! | CCTGATAATGTGTCACAATG+AGG | + | chr1.4:47267004-47267023 | None:intergenic | 40.0% |
! | GCTTTGGTGGCAAAATTGAA+GGG | - | chr1.4:47265798-47265817 | MS.gene066124:intron | 40.0% |
! | GGTGTTGAAACTGAAACCAT+AGG | + | chr1.4:47266635-47266654 | None:intergenic | 40.0% |
!! | ATAAGTTCTGGTGTTGTTGG+TGG | + | chr1.4:47263787-47263806 | None:intergenic | 40.0% |
!! | CTTGTTTTTCTCAACTCAGC+CGG | - | chr1.4:47263734-47263753 | MS.gene066124:CDS | 40.0% |
!! | GAGATAAGTTCTGGTGTTGT+TGG | + | chr1.4:47263790-47263809 | None:intergenic | 40.0% |
!!! | GGATTGTTTTGGTTTGAAGG+TGG | - | chr1.4:47265583-47265602 | MS.gene066124:intron | 40.0% |
!!! | GGTTTTTTTTTTTGGTGGCC+GGG | + | chr1.4:47265192-47265211 | None:intergenic | 40.0% |
!!! | GTTTTTTTTTTTGGTGGCCG+GGG | + | chr1.4:47265191-47265210 | None:intergenic | 40.0% |
AAAGAAGTAAGGAGGTCACC+TGG | + | chr1.4:47266294-47266313 | None:intergenic | 45.0% | |
AATGCTTGGAGACCTCAAAG+AGG | - | chr1.4:47265893-47265912 | MS.gene066124:intron | 45.0% | |
AATTGTGCGGCAAACCTCTT+TGG | + | chr1.4:47267145-47267164 | None:intergenic | 45.0% | |
ATCAGTACATGGCCATCATG+AGG | - | chr1.4:47263853-47263872 | MS.gene066124:CDS | 45.0% | |
ATGCGGAACAATTTGCACCA+AGG | - | chr1.4:47266936-47266955 | MS.gene066124:CDS | 45.0% | |
ATTACCAATCCTGCAAGGTC+CGG | - | chr1.4:47265058-47265077 | MS.gene066124:CDS | 45.0% | |
CATGAGGTTTCTGCTTTGCA+TGG | - | chr1.4:47263869-47263888 | MS.gene066124:CDS | 45.0% | |
GAATCTTCAACTGCGGTTAG+TGG | - | chr1.4:47264205-47264224 | MS.gene066124:CDS | 45.0% | |
GAGGTCTCCAAGCATTATGA+TGG | + | chr1.4:47265889-47265908 | None:intergenic | 45.0% | |
GAGGTTGGAACTCTTTCTTG+TGG | + | chr1.4:47266572-47266591 | None:intergenic | 45.0% | |
GCAAAGCAGAAACCTCATGA+TGG | + | chr1.4:47263868-47263887 | None:intergenic | 45.0% | |
GGAACTCTTTCTTGTGGAGT+TGG | + | chr1.4:47266566-47266585 | None:intergenic | 45.0% | |
GGAGATTGTTTGTAGCGCTA+GGG | + | chr1.4:47265702-47265721 | None:intergenic | 45.0% | |
GTATAGCGAGTACTTACGGA+TGG | + | chr1.4:47265973-47265992 | None:intergenic | 45.0% | |
GTGGCAAAATTGAAGGGTCT+AGG | - | chr1.4:47265804-47265823 | MS.gene066124:intron | 45.0% | |
GTTTGCCGCACAATTGTTAC+CGG | - | chr1.4:47267150-47267169 | MS.gene066124:CDS | 45.0% | |
TCCTCGTTTGAACAAGTTGC+AGG | - | chr1.4:47265650-47265669 | MS.gene066124:intron | 45.0% | |
TCGGCAGAACAATCAGTACA+TGG | - | chr1.4:47263842-47263861 | MS.gene066124:CDS | 45.0% | |
TGCTTCAAACGGCTGTGTTT+CGG | - | chr1.4:47264048-47264067 | MS.gene066124:CDS | 45.0% | |
TGGAGATTGTTTGTAGCGCT+AGG | + | chr1.4:47265703-47265722 | None:intergenic | 45.0% | |
TTCAGCTTCACGGAACTTGA+TGG | - | chr1.4:47266698-47266717 | MS.gene066124:CDS | 45.0% | |
TTGGATTCTGTTTCCGAGGT+TGG | + | chr1.4:47266587-47266606 | None:intergenic | 45.0% | |
! | ATTCGCAGCTCTAATTTGGC+CGG | + | chr1.4:47265756-47265775 | None:intergenic | 45.0% |
! | CGGCTGAGTTGAGAAAAACA+AGG | + | chr1.4:47263736-47263755 | None:intergenic | 45.0% |
! | TCCTGCAACTTGTTCAAACG+AGG | + | chr1.4:47265654-47265673 | None:intergenic | 45.0% |
! | TCGTCTTTGGAAACCAATGG+TGG | - | chr1.4:47266442-47266461 | MS.gene066124:intron | 45.0% |
! | TCTTTGGAAACCAATGGTGG+AGG | - | chr1.4:47266445-47266464 | MS.gene066124:CDS | 45.0% |
! | TGAGCTTAGCTCAGTTGGTA+TGG | - | chr1.4:47264882-47264901 | MS.gene066124:CDS | 45.0% |
!! | CTGTTTCTGTTCTTCGTGCT+TGG | - | chr1.4:47265930-47265949 | MS.gene066124:intron | 45.0% |
!! | GAAATCCAAGGTGGTTCTGA+CGG | - | chr1.4:47263629-47263648 | MS.gene066124:CDS | 45.0% |
!! | GGAGAAGATGATAGCTTTGG+TGG | - | chr1.4:47265785-47265804 | MS.gene066124:intron | 45.0% |
!! | TTGGTGGTGGTGATGGAAAT+GGG | - | chr1.4:47264242-47264261 | MS.gene066124:CDS | 45.0% |
!!! | GGAGTTGGTGTTTTCATCGA+AGG | + | chr1.4:47266551-47266570 | None:intergenic | 45.0% |
!!! | ATATATTTTTTTTTTTTTTG+TGG | + | chr1.4:47265480-47265499 | None:intergenic | 5.0% |
AAAACAAGGTTACCGGCGTG+TGG | + | chr1.4:47263722-47263741 | None:intergenic | 50.0% | |
AACAGGACTTACTAGGAGCC+AGG | - | chr1.4:47266273-47266292 | MS.gene066124:intron | 50.0% | |
AAGCAAGTCCAAAGCGAACG+AGG | - | chr1.4:47266729-47266748 | MS.gene066124:CDS | 50.0% | |
ACTGATTGTTCTGCCGAGAG+CGG | + | chr1.4:47263839-47263858 | None:intergenic | 50.0% | |
AGCTTACATGCTCAAGGGTC+AGG | - | chr1.4:47263986-47264005 | MS.gene066124:CDS | 50.0% | |
ATTCACGCGCCGCTGAATTA+GGG | + | chr1.4:47263937-47263956 | None:intergenic | 50.0% | |
CTTCAAACGGCTGTGTTTCG+GGG | - | chr1.4:47264050-47264069 | MS.gene066124:CDS | 50.0% | |
CTTTCGGGCAATCCTCTTTG+AGG | + | chr1.4:47265908-47265927 | None:intergenic | 50.0% | |
GCTTCAAACGGCTGTGTTTC+GGG | - | chr1.4:47264049-47264068 | MS.gene066124:CDS | 50.0% | |
TCAACTGCGGTTAGTGGAGA+AGG | - | chr1.4:47264211-47264230 | MS.gene066124:CDS | 50.0% | |
TCAAGAGCTGAATGGTTCCG+AGG | - | chr1.4:47266493-47266512 | MS.gene066124:CDS | 50.0% | |
TCATGGTTCCTCGTTCGCTT+TGG | + | chr1.4:47266740-47266759 | None:intergenic | 50.0% | |
TCGGGTTCGTCTGCTTCAAA+CGG | - | chr1.4:47264037-47264056 | MS.gene066124:CDS | 50.0% | |
TTACCAATCCTGCAAGGTCC+GGG | - | chr1.4:47265059-47265078 | MS.gene066124:CDS | 50.0% | |
! | AGTGGAGAAGGTGGTTCTGT+TGG | - | chr1.4:47264223-47264242 | MS.gene066124:CDS | 50.0% |
!! | AGTTCTGGTGTTGTTGGTGG+TGG | + | chr1.4:47263784-47263803 | None:intergenic | 50.0% |
!! | GTTGGTGGTGGTGATGGAAA+TGG | - | chr1.4:47264241-47264260 | MS.gene066124:CDS | 50.0% |
AATCCACACGCGCTACTCAG+GGG | - | chr1.4:47263954-47263973 | MS.gene066124:CDS | 55.0% | |
ACTGCGGTTAGTGGAGAAGG+TGG | - | chr1.4:47264214-47264233 | MS.gene066124:CDS | 55.0% | |
CACATGTTGTACCGCATGCG+CGG | + | chr1.4:47263902-47263921 | None:intergenic | 55.0% | |
CCAACTGAGCTAAGCTCACG+AGG | + | chr1.4:47264880-47264899 | None:intergenic | 55.0% | |
CCTCGTGAGCTTAGCTCAGT+TGG | - | chr1.4:47264877-47264896 | MS.gene066124:CDS | 55.0% | |
CTCACGAGGACAGTTGGTCA+TGG | + | chr1.4:47264866-47264885 | None:intergenic | 55.0% | |
CTGATTGTTCTGCCGAGAGC+GGG | + | chr1.4:47263838-47263857 | None:intergenic | 55.0% | |
GAATCCACACGCGCTACTCA+GGG | - | chr1.4:47263953-47263972 | MS.gene066124:CDS | 55.0% | |
GATTCACGCGCCGCTGAATT+AGG | + | chr1.4:47263938-47263957 | None:intergenic | 55.0% | |
GCTAAGCTCACGAGGACAGT+TGG | + | chr1.4:47264872-47264891 | None:intergenic | 55.0% | |
GTGGCGCGTGAGATAAGTTC+TGG | + | chr1.4:47263799-47263818 | None:intergenic | 55.0% | |
TACCAATCCTGCAAGGTCCG+GGG | - | chr1.4:47265060-47265079 | MS.gene066124:CDS | 55.0% | |
TGAATCCACACGCGCTACTC+AGG | - | chr1.4:47263952-47263971 | MS.gene066124:CDS | 55.0% | |
TTGTAGCGCTAGGGCAGTGT+AGG | + | chr1.4:47265693-47265712 | None:intergenic | 55.0% | |
! | GAAGGTGGTTCTGTTGGTGG+TGG | - | chr1.4:47264229-47264248 | MS.gene066124:CDS | 55.0% |
! | GGAGAAGGTGGTTCTGTTGG+TGG | - | chr1.4:47264226-47264245 | MS.gene066124:CDS | 55.0% |
!! | CTGGTGTTGTTGGTGGTGGA+GGG | + | chr1.4:47263780-47263799 | None:intergenic | 55.0% |
!! | GGTTCTGTTGGTGGTGGTGA+TGG | - | chr1.4:47264235-47264254 | MS.gene066124:CDS | 55.0% |
!! | TCTGGTGTTGTTGGTGGTGG+AGG | + | chr1.4:47263781-47263800 | None:intergenic | 55.0% |
AACCCCGGACCTTGCAGGAT+TGG | + | chr1.4:47265065-47265084 | None:intergenic | 60.0% | |
AACCCCGGATTGTGGTGGCA+GGG | + | chr1.4:47264949-47264968 | None:intergenic | 60.0% | |
AACCCCTGCCACCACAATCC+GGG | - | chr1.4:47264943-47264962 | MS.gene066124:CDS | 60.0% | |
AACTCAGCCGGCAATCACCC+CGG | - | chr1.4:47263746-47263765 | MS.gene066124:CDS | 60.0% | |
ACAAGGTTACCGGCGTGTGG+CGG | + | chr1.4:47263719-47263738 | None:intergenic | 60.0% | |
ACATGCTCAAGGGTCAGGCG+AGG | - | chr1.4:47263991-47264010 | MS.gene066124:CDS | 60.0% | |
ACGCGCCGCTGAATTAGGGT+CGG | + | chr1.4:47263933-47263952 | None:intergenic | 60.0% | |
ACGCGCGTGTTCCCATTGGT+GGG | - | chr1.4:47264014-47264033 | MS.gene066124:CDS | 60.0% | |
AGACGAACCCGACCCACCAA+TGG | + | chr1.4:47264029-47264048 | None:intergenic | 60.0% | |
AGCGGGACTCCGACAAACTG+TGG | + | chr1.4:47263821-47263840 | None:intergenic | 60.0% | |
AGTGTTGCCGGGGTGATTGC+CGG | + | chr1.4:47263756-47263775 | None:intergenic | 60.0% | |
ATGTTGTACCGCATGCGCGG+TGG | + | chr1.4:47263899-47263918 | None:intergenic | 60.0% | |
CACGCGCCACCACAGTTTGT+CGG | - | chr1.4:47263809-47263828 | MS.gene066124:CDS | 60.0% | |
CGCGCATGCGGTACAACATG+TGG | - | chr1.4:47263900-47263919 | MS.gene066124:CDS | 60.0% | |
GAACCCCTGCCACCACAATC+CGG | - | chr1.4:47264942-47264961 | MS.gene066124:CDS | 60.0% | |
GAAGGCCGTCAGAACCACCT+TGG | + | chr1.4:47263637-47263656 | None:intergenic | 60.0% | |
GACGAACCCGACCCACCAAT+GGG | + | chr1.4:47264028-47264047 | None:intergenic | 60.0% | |
GGGACTCCGACAAACTGTGG+TGG | + | chr1.4:47263818-47263837 | None:intergenic | 60.0% | |
GTTCGAACCCCGGATTGTGG+TGG | + | chr1.4:47264954-47264973 | None:intergenic | 60.0% | |
GTTTGTCGGAGTCCCGCTCT+CGG | - | chr1.4:47263823-47263842 | MS.gene066124:CDS | 60.0% | |
TGTTGTACCGCATGCGCGGT+GGG | + | chr1.4:47263898-47263917 | None:intergenic | 60.0% | |
! | CGTGTTCCCATTGGTGGGTC+GGG | - | chr1.4:47264019-47264038 | MS.gene066124:CDS | 60.0% |
! | GCGTGTTCCCATTGGTGGGT+CGG | - | chr1.4:47264018-47264037 | MS.gene066124:CDS | 60.0% |
!! | GTGGTGGAGGGAAGTGTTGC+CGG | + | chr1.4:47263768-47263787 | None:intergenic | 60.0% |
!! | TGGTGGAGGGAAGTGTTGCC+GGG | + | chr1.4:47263767-47263786 | None:intergenic | 60.0% |
AAGGTCCGGGGTTCGAACCC+CGG | - | chr1.4:47265171-47265190 | MS.gene066124:intron | 65.0% | |
ACCCCGGATTGTGGTGGCAG+GGG | + | chr1.4:47264948-47264967 | None:intergenic | 65.0% | |
ACCCCTGCCACCACAATCCG+GGG | - | chr1.4:47264944-47264963 | MS.gene066124:CDS | 65.0% | |
ATGGCTTCCCACCGCGCATG+CGG | - | chr1.4:47263888-47263907 | MS.gene066124:CDS | 65.0% | |
CCCCGCCGACCCTAATTCAG+CGG | - | chr1.4:47263925-47263944 | MS.gene066124:CDS | 65.0% | |
CCGCTGAATTAGGGTCGGCG+GGG | + | chr1.4:47263928-47263947 | None:intergenic | 65.0% | |
CGCCGCTGAATTAGGGTCGG+CGG | + | chr1.4:47263930-47263949 | None:intergenic | 65.0% | |
GAACCCCGGATTGTGGTGGC+AGG | + | chr1.4:47264950-47264969 | None:intergenic | 65.0% | |
GACGCGCGTGTTCCCATTGG+TGG | - | chr1.4:47264013-47264032 | MS.gene066124:CDS | 65.0% | |
GAGGACGCGCGTGTTCCCAT+TGG | - | chr1.4:47264010-47264029 | MS.gene066124:CDS | 65.0% | |
GATGGTCGGGGTTCGAACCC+CGG | + | chr1.4:47264964-47264983 | None:intergenic | 65.0% | |
GCCGCTGAATTAGGGTCGGC+GGG | + | chr1.4:47263929-47263948 | None:intergenic | 65.0% | |
GGGGTTCGAACCCCGGATTG+TGG | + | chr1.4:47264957-47264976 | None:intergenic | 65.0% | |
GGTGGCTGAGGTTCGAACCC+CGG | + | chr1.4:47265080-47265099 | None:intergenic | 65.0% | |
GTTCGAACCCCGGACCTTGC+AGG | + | chr1.4:47265070-47265089 | None:intergenic | 65.0% | |
!! | GGTGGAGGGAAGTGTTGCCG+GGG | + | chr1.4:47263766-47263785 | None:intergenic | 65.0% |
AGGTTACCGGCGTGTGGCGG+CGG | + | chr1.4:47263716-47263735 | None:intergenic | 70.0% | |
CAGCCCCTGAGTAGCGCGTG+TGG | + | chr1.4:47263960-47263979 | None:intergenic | 70.0% | |
GGTGGCAGGGGTTCGAACCC+CGG | + | chr1.4:47264936-47264955 | None:intergenic | 70.0% | |
GGTGGCCGGGGTTCGAACCC+CGG | + | chr1.4:47265179-47265198 | None:intergenic | 75.0% | |
! | CCGCAACCGCCGCCACACGC+CGG | - | chr1.4:47263707-47263726 | MS.gene066124:CDS | 80.0% |
! | CCGGCGTGTGGCGGCGGTTG+CGG | + | chr1.4:47263710-47263729 | None:intergenic | 80.0% |
! | TGGCGGCGGTTGCGGCGCGT+CGG | + | chr1.4:47263702-47263721 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 47263602 | 47267186 | 47263602 | ID=MS.gene066124 |
chr1.4 | mRNA | 47263602 | 47267186 | 47263602 | ID=MS.gene066124.t1;Parent=MS.gene066124 |
chr1.4 | exon | 47266443 | 47267186 | 47266443 | ID=MS.gene066124.t1.exon1;Parent=MS.gene066124.t1 |
chr1.4 | CDS | 47266443 | 47267186 | 47266443 | ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1 |
chr1.4 | exon | 47264813 | 47265186 | 47264813 | ID=MS.gene066124.t1.exon2;Parent=MS.gene066124.t1 |
chr1.4 | CDS | 47264813 | 47265186 | 47264813 | ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1 |
chr1.4 | exon | 47264494 | 47264554 | 47264494 | ID=MS.gene066124.t1.exon3;Parent=MS.gene066124.t1 |
chr1.4 | CDS | 47264494 | 47264554 | 47264494 | ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1 |
chr1.4 | exon | 47263602 | 47264375 | 47263602 | ID=MS.gene066124.t1.exon4;Parent=MS.gene066124.t1 |
chr1.4 | CDS | 47263602 | 47264375 | 47263602 | ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1 |
Gene Sequence |
Protein sequence |