AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066124


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066124.t1 MTR_1g057790 97.849 651 11 3 1 650 1 649 0.0 1319
MS.gene066124.t1 MTR_7g106320 64.841 694 166 23 1 650 1 660 0.0 782
MS.gene066124.t1 MTR_4g051532 46.540 737 281 28 1 650 1 711 2.33e-165 490
MS.gene066124.t1 MTR_1g023050 54.870 308 119 5 142 439 148 445 5.65e-100 318
MS.gene066124.t1 MTR_3g112300 54.266 293 117 6 150 435 148 430 7.89e-95 302
MS.gene066124.t1 MTR_3g112300 54.266 293 117 6 150 435 148 430 3.54e-94 302
MS.gene066124.t1 MTR_5g018860 46.552 348 160 6 153 477 330 674 2.28e-88 291
MS.gene066124.t1 MTR_8g078480 53.103 290 116 4 157 434 384 665 6.12e-87 290
MS.gene066124.t1 MTR_8g098815 53.558 267 116 3 161 424 185 446 2.00e-79 264
MS.gene066124.t1 MTR_3g112300 52.381 252 106 5 150 394 148 392 4.50e-77 251
MS.gene066124.t1 MTR_3g112290 47.584 269 122 4 160 420 164 421 5.20e-72 239
MS.gene066124.t1 MTR_4g019450 41.617 334 145 7 156 470 191 493 2.92e-70 239
MS.gene066124.t1 MTR_7g065050 45.066 304 128 8 153 443 129 406 1.16e-67 230
MS.gene066124.t1 MTR_2g095050 40.498 321 166 7 112 419 203 511 1.10e-65 227
MS.gene066124.t1 MTR_3g112300 49.784 231 102 5 150 373 148 371 4.63e-64 216
MS.gene066124.t1 MTR_1g016490 35.211 284 155 5 162 433 244 510 7.07e-49 179
MS.gene066124.t1 MTR_7g114930 91.892 37 3 0 528 564 9 45 6.38e-17 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066124.t1 AT2G35940 50.068 737 224 24 1 650 1 680 0.0 555
MS.gene066124.t1 AT2G35940 50.068 737 224 24 1 650 1 680 0.0 555
MS.gene066124.t1 AT2G35940 50.068 737 224 24 1 650 1 680 0.0 555
MS.gene066124.t1 AT2G16400 54.082 294 115 4 144 435 97 372 2.68e-97 307
MS.gene066124.t1 AT4G34610 51.543 324 118 7 124 429 94 396 2.41e-92 296
MS.gene066124.t1 AT4G34610 51.543 324 118 7 124 429 94 396 2.41e-92 296
MS.gene066124.t1 AT4G34610 51.543 324 118 7 124 429 94 396 2.41e-92 296
MS.gene066124.t1 AT4G34610 51.543 324 118 7 124 429 94 396 2.41e-92 296
MS.gene066124.t1 AT1G75410 52.921 291 122 5 156 442 162 441 1.21e-91 294
MS.gene066124.t1 AT1G75410 52.921 291 122 5 156 442 162 441 1.21e-91 294
MS.gene066124.t1 AT1G19700 56.679 277 106 7 152 421 156 425 4.83e-91 293
MS.gene066124.t1 AT1G19700 56.679 277 106 7 152 421 156 425 4.83e-91 293
MS.gene066124.t1 AT1G19700 56.679 277 106 7 152 421 156 425 4.83e-91 293
MS.gene066124.t1 AT1G19700 56.679 277 106 7 152 421 156 425 4.83e-91 293
MS.gene066124.t1 AT1G19700 56.679 277 106 7 152 421 156 425 4.83e-91 293
MS.gene066124.t1 AT2G27220 47.093 344 138 8 163 496 78 387 5.87e-85 273
MS.gene066124.t1 AT2G27220 47.093 344 138 8 163 496 78 387 5.87e-85 273
MS.gene066124.t1 AT2G27220 44.751 362 138 9 163 496 78 405 4.28e-81 264
MS.gene066124.t1 AT4G36870 50.000 296 126 5 161 443 312 598 3.36e-80 269
MS.gene066124.t1 AT4G36870 50.000 296 126 5 161 443 312 598 3.36e-80 269
MS.gene066124.t1 AT2G23760 51.673 269 112 4 155 414 232 491 8.25e-78 260
MS.gene066124.t1 AT2G23760 51.673 269 112 4 155 414 232 491 8.25e-78 260
MS.gene066124.t1 AT2G23760 51.673 269 112 4 155 414 232 491 8.25e-78 260
MS.gene066124.t1 AT1G75410 53.498 243 98 5 156 394 162 393 9.95e-74 243
MS.gene066124.t1 AT5G41410 45.985 274 132 3 164 423 196 467 1.27e-72 246
MS.gene066124.t1 AT2G23760 43.302 321 112 5 155 414 232 543 5.65e-68 235
MS.gene066124.t1 AT1G75430 42.123 292 148 7 155 438 10 288 7.78e-65 216
MS.gene066124.t1 AT4G36870 49.180 244 106 4 161 395 312 546 1.03e-63 220
MS.gene066124.t1 AT5G02030 40.979 327 153 6 100 417 123 418 1.05e-63 221
MS.gene066124.t1 AT4G36870 48.760 242 106 4 161 393 312 544 1.56e-62 218
MS.gene066124.t1 AT4G32980 36.728 324 169 8 119 426 147 450 1.38e-54 194
MS.gene066124.t1 AT4G32980 36.728 324 169 8 119 426 147 450 1.38e-54 194
MS.gene066124.t1 AT2G27990 37.117 326 158 7 107 419 205 496 1.96e-52 190
MS.gene066124.t1 AT1G75430 37.885 227 125 6 155 373 10 228 6.08e-36 137
MS.gene066124.t1 AT2G27990 30.357 280 148 7 107 373 205 450 3.50e-26 112

Find 169 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCAAACGGCTGTGTTTC+GGG 0.133801 1.4:-47266717 MS.gene066124:CDS
GAACAAATTTCAATGAAATT+TGG 0.179649 1.4:-47263954 MS.gene066124:CDS
GATTCACGCGCCGCTGAATT+AGG 0.199035 1.4:+47266831 None:intergenic
TCTTATTCGCAGCTCTAATT+TGG 0.208590 1.4:+47265009 None:intergenic
CCTCATTGTGACACATTATC+AGG 0.219156 1.4:-47263765 MS.gene066124:CDS
TGCTTCAAACGGCTGTGTTT+CGG 0.238102 1.4:-47266718 MS.gene066124:CDS
GTGGTGGAGGGAAGTGTTGC+CGG 0.239922 1.4:+47267001 None:intergenic
GATGAAGTTGTTAATGTTAA+TGG 0.243321 1.4:-47266639 MS.gene066124:CDS
TTCTTCCTAGTTGAATGTTT+TGG 0.253546 1.4:+47263718 None:intergenic
TAAATGCTCGAGTTCGTCTT+TGG 0.292125 1.4:-47264337 MS.gene066124:CDS
AATTGTGCGGCAAACCTCTT+TGG 0.296812 1.4:+47263624 None:intergenic
TAATGTTAATGGTGGGATTA+AGG 0.300957 1.4:-47266628 MS.gene066124:CDS
TAGAGCTGCGAATAAGAGTT+TGG 0.301506 1.4:-47265003 MS.gene066124:CDS
ACTAATTTCATTGCTGGTTT+CGG 0.310210 1.4:-47263885 MS.gene066124:CDS
AACCAAACTAATTTCATTGC+TGG 0.316269 1.4:-47263891 MS.gene066124:CDS
AACCAGCAATGAAATTAGTT+TGG 0.317050 1.4:+47263889 None:intergenic
ATTATTAGTTGTTGTTTCAT+TGG 0.321824 1.4:+47263977 None:intergenic
CTGTTTCTGTTCTTCGTGCT+TGG 0.327008 1.4:-47264836 MS.gene066124:CDS
AGTGTTGCCGGGGTGATTGC+CGG 0.333797 1.4:+47267013 None:intergenic
TCTGGTGTTGTTGGTGGTGG+AGG 0.335542 1.4:+47266988 None:intergenic
ATATGGTACAGGTTTCAAAT+TGG 0.342374 1.4:-47264364 MS.gene066124:intron
CCGGCGTGTGGCGGCGGTTG+CGG 0.342838 1.4:+47267059 None:intergenic
ACAAAGAGCTATTCAACAAT+TGG 0.347219 1.4:-47264910 MS.gene066124:CDS
TGGTGGAGGGAAGTGTTGCC+GGG 0.348095 1.4:+47267002 None:intergenic
GTGAATGTTAGAAACAATTC+AGG 0.352767 1.4:-47264092 MS.gene066124:CDS
TTTGAACAAGTTGCAGGAAT+TGG 0.356194 1.4:-47265110 MS.gene066124:CDS
TCCTCGTTTGAACAAGTTGC+AGG 0.356397 1.4:-47265116 MS.gene066124:CDS
TAGAGATGGTTATTGTTTCA+TGG 0.358531 1.4:-47263916 MS.gene066124:CDS
TTGTTTGGAATTGAAACTTT+TGG 0.360991 1.4:+47264163 None:intergenic
CTTATTTATGCCACAAAATC+CGG 0.365359 1.4:+47263597 None:intergenic
GTTGGTGGTGGTGATGGAAA+TGG 0.367432 1.4:-47266525 MS.gene066124:CDS
GGAACTCTTTCTTGTGGAGT+TGG 0.373552 1.4:+47264203 None:intergenic
AACCATAGGAATGTCTTGTT+TGG 0.375205 1.4:+47264148 None:intergenic
TTTCTAACATTCACACCAAT+AGG 0.376813 1.4:+47264101 None:intergenic
ACACCATCAACTTCACCTAT+TGG 0.384849 1.4:-47264116 MS.gene066124:CDS
ATTAGCGAAACAAATGAGTT+TGG 0.384850 1.4:-47263687 MS.gene066124:CDS
CTTTCGGGCAATCCTCTTTG+AGG 0.389055 1.4:+47264861 None:intergenic
TGTTTAAAAGATGCAATTAC+CGG 0.390768 1.4:-47265032 MS.gene066124:CDS
CAAAACAAACAGGACTTACT+AGG 0.391251 1.4:-47264500 MS.gene066124:CDS
GGTTCTGTTGGTGGTGGTGA+TGG 0.395350 1.4:-47266531 MS.gene066124:CDS
TCATGGTTCCTCGTTCGCTT+TGG 0.399272 1.4:+47264029 None:intergenic
ATTCACGCGCCGCTGAATTA+GGG 0.401306 1.4:+47266832 None:intergenic
CATGAGGTTTCTGCTTTGCA+TGG 0.403905 1.4:-47266897 MS.gene066124:CDS
AAGAACAGAAACAGATCTTT+CGG 0.408106 1.4:+47264845 None:intergenic
GGAGAAGGTGGTTCTGTTGG+TGG 0.408233 1.4:-47266540 MS.gene066124:CDS
TTCAGCTTCACGGAACTTGA+TGG 0.410535 1.4:-47264068 MS.gene066124:CDS
GTTTGCCGCACAATTGTTAC+CGG 0.411095 1.4:-47263616 MS.gene066124:CDS
TTGGATTCTGTTTCCGAGGT+TGG 0.416477 1.4:+47264182 None:intergenic
TCATTGGACTTCACATGATT+CGG 0.418133 1.4:+47263993 None:intergenic
AGGAAATCACCATCTGCATT+TGG 0.421394 1.4:+47265135 None:intergenic
GCCGCTGAATTAGGGTCGGC+GGG 0.424159 1.4:+47266840 None:intergenic
AGCTTACATGCTCAAGGGTC+AGG 0.425924 1.4:-47266780 MS.gene066124:CDS
AGTTCTGGTGTTGTTGGTGG+TGG 0.426204 1.4:+47266985 None:intergenic
CGTGTTCCCATTGGTGGGTC+GGG 0.428031 1.4:-47266747 MS.gene066124:CDS
TGAATCCACACGCGCTACTC+AGG 0.434230 1.4:-47266814 MS.gene066124:CDS
AGTGGAGAAGGTGGTTCTGT+TGG 0.435026 1.4:-47266543 MS.gene066124:CDS
TTGGGAGAAGATGATAGCTT+TGG 0.441809 1.4:-47264984 MS.gene066124:CDS
CATGTGTTTGTCTGAATCCT+TGG 0.446993 1.4:+47264527 None:intergenic
GAATCTTCAACTGCGGTTAG+TGG 0.448461 1.4:-47266561 MS.gene066124:CDS
CACATGCTTGCAAAACAAAC+AGG 0.449703 1.4:-47264510 MS.gene066124:CDS
CTGGTGTTGTTGGTGGTGGA+GGG 0.450438 1.4:+47266989 None:intergenic
AGAGCTGCGAATAAGAGTTT+GGG 0.451616 1.4:-47265002 MS.gene066124:CDS
AGCTTTGGTGGCAAAATTGA+AGG 0.452290 1.4:-47264969 MS.gene066124:CDS
AATCTTCCGATTTCCTCCAT+TGG 0.452740 1.4:+47263855 None:intergenic
AGAACAGAAACAGATCTTTC+GGG 0.455936 1.4:+47264846 None:intergenic
TTGGTGGTGGTGATGGAAAT+GGG 0.457024 1.4:-47266524 MS.gene066124:CDS
GAGGTCTCCAAGCATTATGA+TGG 0.458928 1.4:+47264880 None:intergenic
AGAGATGGTTATTGTTTCAT+GGG 0.464621 1.4:-47263915 MS.gene066124:CDS
GGAGAAGATGATAGCTTTGG+TGG 0.464797 1.4:-47264981 MS.gene066124:CDS
TGGAGATTGTTTGTAGCGCT+AGG 0.469541 1.4:+47265066 None:intergenic
AATGGTGTTTCACTCACTCT+TGG 0.469626 1.4:-47263792 MS.gene066124:CDS
TTTGCTTGATTTGTTGTCCT+CGG 0.470961 1.4:+47264256 None:intergenic
ATGTACATTTCCTCCACCAT+TGG 0.475080 1.4:+47264311 None:intergenic
CATTCAACTAGGAAGAAGAT+TGG 0.477777 1.4:-47263712 MS.gene066124:CDS
GCGTGTTCCCATTGGTGGGT+CGG 0.478334 1.4:-47266748 MS.gene066124:CDS
CAAAGAGCTATTCAACAATT+GGG 0.478974 1.4:-47264909 MS.gene066124:CDS
GAGATAAGTTCTGGTGTTGT+TGG 0.480326 1.4:+47266979 None:intergenic
CAATATCCAATGGAGGAAAT+CGG 0.481438 1.4:-47263861 MS.gene066124:CDS
AGGTTACCGGCGTGTGGCGG+CGG 0.487521 1.4:+47267053 None:intergenic
GACGAACCCGACCCACCAAT+GGG 0.487772 1.4:+47266741 None:intergenic
GACGCGCGTGTTCCCATTGG+TGG 0.492130 1.4:-47266753 MS.gene066124:CDS
TCGGTGATTGAAGAATTTCA+TGG 0.493060 1.4:+47264012 None:intergenic
GAAGGTGGTTCTGTTGGTGG+TGG 0.495223 1.4:-47266537 MS.gene066124:CDS
CCGCAACCGCCGCCACACGC+CGG 0.496101 1.4:-47267059 MS.gene066124:CDS
TGGCGGCGGTTGCGGCGCGT+CGG 0.498231 1.4:+47267067 None:intergenic
GTGGCAAAATTGAAGGGTCT+AGG 0.499962 1.4:-47264962 MS.gene066124:CDS
CTGATTGTTCTGCCGAGAGC+GGG 0.508560 1.4:+47266931 None:intergenic
GAATGATCCATCATAATGCT+TGG 0.508715 1.4:-47264887 MS.gene066124:CDS
TTCCAAACAAGACATTCCTA+TGG 0.509814 1.4:-47264150 MS.gene066124:CDS
AATGTACATGGAAGAGATGA+AGG 0.518111 1.4:-47264297 MS.gene066124:CDS
CATAATAATTCAGAAATCCA+AGG 0.518498 1.4:-47267149 MS.gene066124:CDS
CAATTCAGGATTCAGCTTCA+CGG 0.521074 1.4:-47264078 MS.gene066124:CDS
CGCCGCTGAATTAGGGTCGG+CGG 0.525952 1.4:+47266839 None:intergenic
CGCGCATGCGGTACAACATG+TGG 0.526523 1.4:-47266866 MS.gene066124:CDS
TCATTAAGCTTACATGCTCA+AGG 0.530266 1.4:-47266786 MS.gene066124:CDS
TCATGAAAATGAGTGTTTGA+AGG 0.530375 1.4:+47267114 None:intergenic
GAATCCACACGCGCTACTCA+GGG 0.533677 1.4:-47266813 MS.gene066124:CDS
AGACGAACCCGACCCACCAA+TGG 0.537440 1.4:+47266740 None:intergenic
ATGTGTTTGTCTGAATCCTT+GGG 0.538305 1.4:+47264528 None:intergenic
ATAAGTTCTGGTGTTGTTGG+TGG 0.538740 1.4:+47266982 None:intergenic
GTTTGTCGGAGTCCCGCTCT+CGG 0.541545 1.4:-47266943 MS.gene066124:CDS
AACAGGACTTACTAGGAGCC+AGG 0.541927 1.4:-47264493 MS.gene066124:intron
TTGTAGCGCTAGGGCAGTGT+AGG 0.542393 1.4:+47265076 None:intergenic
TCAACTGCGGTTAGTGGAGA+AGG 0.547613 1.4:-47266555 MS.gene066124:CDS
TTATTATTACCTGAAAACCT+TGG 0.548405 1.4:+47263813 None:intergenic
ATTCGCAGCTCTAATTTGGC+CGG 0.548463 1.4:+47265013 None:intergenic
GTTAATTAACATGCTTGATG+AGG 0.549695 1.4:-47266442 MS.gene066124:intron
CACGCGCCACCACAGTTTGT+CGG 0.549865 1.4:-47266957 MS.gene066124:CDS
AACTCAGCCGGCAATCACCC+CGG 0.551055 1.4:-47267020 MS.gene066124:CDS
TCGGGTTCGTCTGCTTCAAA+CGG 0.552442 1.4:-47266729 MS.gene066124:CDS
GGAGATTGTTTGTAGCGCTA+GGG 0.553654 1.4:+47265067 None:intergenic
GTGGCGCGTGAGATAAGTTC+TGG 0.557053 1.4:+47266970 None:intergenic
AGTTCGTCTTTGGAAACCAA+TGG 0.560987 1.4:-47264327 MS.gene066124:CDS
GATGATAGACAAAGTAGAGA+TGG 0.562540 1.4:-47263930 MS.gene066124:CDS
ACACCAATAGGTGAAGTTGA+TGG 0.562831 1.4:+47264113 None:intergenic
GAGGACGCGCGTGTTCCCAT+TGG 0.566554 1.4:-47266756 MS.gene066124:CDS
ATGGCTTCCCACCGCGCATG+CGG 0.566720 1.4:-47266878 MS.gene066124:CDS
GAGTAATTGATGTAACCTGA+TGG 0.567818 1.4:+47267089 None:intergenic
GAAGTTGTTAATGTTAATGG+TGG 0.567999 1.4:-47266636 MS.gene066124:CDS
CTTCAAACGGCTGTGTTTCG+GGG 0.569323 1.4:-47266716 MS.gene066124:CDS
TCTTTGGAAACCAATGGTGG+AGG 0.574109 1.4:-47264321 MS.gene066124:CDS
GAAGGCCGTCAGAACCACCT+TGG 0.574186 1.4:+47267132 None:intergenic
CAGCCCCTGAGTAGCGCGTG+TGG 0.574542 1.4:+47266809 None:intergenic
ATGAAGGATCAAGAGCTGAA+TGG 0.575119 1.4:-47264281 MS.gene066124:CDS
GAAATCCAAGGTGGTTCTGA+CGG 0.578996 1.4:-47267137 MS.gene066124:CDS
TGTTGTACCGCATGCGCGGT+GGG 0.579687 1.4:+47266871 None:intergenic
CCAAACCAAAACATTCAACT+AGG 0.581717 1.4:-47263723 MS.gene066124:CDS
GTTTGATTTCAGTTATCCCA+AGG 0.585733 1.4:-47264544 MS.gene066124:intron
ACGCGCGTGTTCCCATTGGT+GGG 0.596736 1.4:-47266752 MS.gene066124:CDS
AAGCAAGTCCAAAGCGAACG+AGG 0.604196 1.4:-47264037 MS.gene066124:CDS
AATGGTGGAGGAAATGTACA+TGG 0.609719 1.4:-47264309 MS.gene066124:CDS
TGTTGGAGAATCTTCAACTG+CGG 0.611838 1.4:-47266568 MS.gene066124:CDS
CCCCGCCGACCCTAATTCAG+CGG 0.612266 1.4:-47266841 MS.gene066124:CDS
TGGTTTCGGTCAATATCCAA+TGG 0.615136 1.4:-47263871 MS.gene066124:CDS
ATGTTGTACCGCATGCGCGG+TGG 0.615571 1.4:+47266870 None:intergenic
TCGTCTTTGGAAACCAATGG+TGG 0.617524 1.4:-47264324 MS.gene066124:CDS
CACATGTTGTACCGCATGCG+CGG 0.618509 1.4:+47266867 None:intergenic
TCGGCAGAACAATCAGTACA+TGG 0.621271 1.4:-47266924 MS.gene066124:CDS
TTTCATCGAAGGATCGTCAT+CGG 0.623127 1.4:+47264229 None:intergenic
GAGGTTGGAACTCTTTCTTG+TGG 0.623921 1.4:+47264197 None:intergenic
GCTTTGGTGGCAAAATTGAA+GGG 0.625009 1.4:-47264968 MS.gene066124:CDS
AAGTTGTTAATGTTAATGGT+GGG 0.628751 1.4:-47266635 MS.gene066124:CDS
GCAAAGCAGAAACCTCATGA+TGG 0.629561 1.4:+47266901 None:intergenic
ATATCACAACCAAATGCAGA+TGG 0.632389 1.4:-47265144 MS.gene066124:CDS
ACGCGCCGCTGAATTAGGGT+CGG 0.633078 1.4:+47266836 None:intergenic
CATTAAGCTTACATGCTCAA+GGG 0.634278 1.4:-47266785 MS.gene066124:CDS
ATCAGTACATGGCCATCATG+AGG 0.634995 1.4:-47266913 MS.gene066124:CDS
ATGCGGAACAATTTGCACCA+AGG 0.636094 1.4:-47263830 MS.gene066124:CDS
AGCGGGACTCCGACAAACTG+TGG 0.637468 1.4:+47266948 None:intergenic
TCCTGCAACTTGTTCAAACG+AGG 0.638911 1.4:+47265115 None:intergenic
TCAACATGCAGAATCCAAAG+AGG 0.639986 1.4:-47263638 MS.gene066124:CDS
ACTGATTGTTCTGCCGAGAG+CGG 0.645804 1.4:+47266930 None:intergenic
GGTGTTGAAACTGAAACCAT+AGG 0.645975 1.4:+47264134 None:intergenic
ACAAGGTTACCGGCGTGTGG+CGG 0.649540 1.4:+47267050 None:intergenic
AAAACAAGGTTACCGGCGTG+TGG 0.650178 1.4:+47267047 None:intergenic
ACTGCGGTTAGTGGAGAAGG+TGG 0.650559 1.4:-47266552 MS.gene066124:CDS
GGTGGAGGGAAGTGTTGCCG+GGG 0.656423 1.4:+47267003 None:intergenic
TCAAGAGCTGAATGGTTCCG+AGG 0.663324 1.4:-47264273 MS.gene066124:CDS
GGAAATCGGAAGATTTGATG+CGG 0.664371 1.4:-47263847 MS.gene066124:CDS
CCTGATAATGTGTCACAATG+AGG 0.665244 1.4:+47263765 None:intergenic
ACATGCTCAAGGGTCAGGCG+AGG 0.668836 1.4:-47266775 MS.gene066124:CDS
ACAAGAAAGAGTTCCAACCT+CGG 0.675024 1.4:-47264195 MS.gene066124:CDS
AAAATCCGGTAACAATTGTG+CGG 0.678724 1.4:+47263611 None:intergenic
GGGACTCCGACAAACTGTGG+TGG 0.685917 1.4:+47266951 None:intergenic
AATGCTTGGAGACCTCAAAG+AGG 0.697679 1.4:-47264873 MS.gene066124:CDS
TTTCGGTCAATATCCAATGG+AGG 0.697787 1.4:-47263868 MS.gene066124:CDS
AATCCACACGCGCTACTCAG+GGG 0.701184 1.4:-47266812 MS.gene066124:CDS
AATAATTCAGAAATCCAAGG+TGG 0.720775 1.4:-47267146 MS.gene066124:CDS
CCGCTGAATTAGGGTCGGCG+GGG 0.731123 1.4:+47266841 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAGGATAAAAAAAA+CGG + chr1.4:47265026-47265045 None:intergenic 10.0%
!! TCAAAAAAAAAAACAATATT+AGG + chr1.4:47264415-47264434 None:intergenic 10.0%
!! TTAAAAAATTACTAAATTGA+CGG + chr1.4:47266094-47266113 None:intergenic 10.0%
!!! AAATCTAAAAACTAAAATTT+TGG + chr1.4:47265346-47265365 None:intergenic 10.0%
!!! ACTCAAATTTATTTAATTTT+TGG - chr1.4:47264724-47264743 MS.gene066124:intron 10.0%
!!! TAAATTAACATTTTAGTTTT+TGG - chr1.4:47266024-47266043 MS.gene066124:intron 10.0%
!!! TTGTTTTCTTAAAAAAAAAA+AGG + chr1.4:47265039-47265058 None:intergenic 10.0%
!!! TTTTTTATCCTTTTTTTTTA+AGG - chr1.4:47265129-47265148 MS.gene066124:CDS 10.0%
!! AATTGTTTCCTTAAAAAAAA+AGG + chr1.4:47265140-47265159 None:intergenic 15.0%
!! ATACTAAAAATGAATTAATG+TGG - chr1.4:47265553-47265572 MS.gene066124:intron 15.0%
!! GTTTCCTTAAAAAAAAAAAA+CGG + chr1.4:47265238-47265257 None:intergenic 15.0%
!!! AGAATTTATGTTTTTTAGAA+TGG - chr1.4:47264622-47264641 MS.gene066124:intron 15.0%
!!! GAGTTAATTAAATTTAGTTT+TGG - chr1.4:47264355-47264374 MS.gene066124:CDS 15.0%
!!! TAAAAACTAAAATTTTGGAA+AGG + chr1.4:47265341-47265360 None:intergenic 15.0%
!!! TCTATCATTTTAAAATTCTA+AGG - chr1.4:47265380-47265399 MS.gene066124:intron 15.0%
!!! TTAAAAAAAAAAAACGGATT+CGG + chr1.4:47265232-47265251 None:intergenic 15.0%
!!! TTACTTTTTAAGTATGATTA+AGG - chr1.4:47264590-47264609 MS.gene066124:intron 15.0%
!!! TTTTATGATACTATTAGAAA+AGG - chr1.4:47265994-47266013 MS.gene066124:intron 15.0%
!! AAAAAAAAATATGCAAGATC+CGG - chr1.4:47264914-47264933 MS.gene066124:CDS 20.0%
!! AATTTGATAGGAACTAAATT+TGG + chr1.4:47264451-47264470 None:intergenic 20.0%
!! GAACAAATTTCAATGAAATT+TGG - chr1.4:47266812-47266831 MS.gene066124:CDS 20.0%
!! TATTGATCATGTTAACAATA+TGG - chr1.4:47266385-47266404 MS.gene066124:intron 20.0%
!! TTAATTCATGTTTGATTCTA+TGG + chr1.4:47264832-47264851 None:intergenic 20.0%
!!! ATTATTAGTTGTTGTTTCAT+TGG + chr1.4:47266792-47266811 None:intergenic 20.0%
!!! ATTTCTTGCAAATACTTTTA+TGG + chr1.4:47265438-47265457 None:intergenic 20.0%
!!! GAATCCGTTTTTTTTTTTTA+AGG - chr1.4:47265231-47265250 MS.gene066124:intron 20.0%
!!! TGTTCATTGGTTTTTTTTTT+TGG + chr1.4:47265200-47265219 None:intergenic 20.0%
!!! TTTTTTTTTTTTGTGATGGT+CGG + chr1.4:47264978-47264997 None:intergenic 20.0%
! AAAAAAAATATGCAAGATCC+GGG - chr1.4:47264915-47264934 MS.gene066124:CDS 25.0%
! AAGTTGTTAATGTTAATGGT+GGG - chr1.4:47264131-47264150 MS.gene066124:CDS 25.0%
! ATGAATTAATGTGGTTTCTT+TGG - chr1.4:47265562-47265581 MS.gene066124:intron 25.0%
! CATAATAATTCAGAAATCCA+AGG - chr1.4:47263617-47263636 MS.gene066124:CDS 25.0%
! CTTGAAAGAACAAATTTGAT+AGG + chr1.4:47264463-47264482 None:intergenic 25.0%
! GATGAAGTTGTTAATGTTAA+TGG - chr1.4:47264127-47264146 MS.gene066124:CDS 25.0%
! TGTTTAAAAGATGCAATTAC+CGG - chr1.4:47265734-47265753 MS.gene066124:intron 25.0%
! TTATTATTACCTGAAAACCT+TGG + chr1.4:47266956-47266975 None:intergenic 25.0%
! TTTGAGAAAAATAAGGTTGT+TGG - chr1.4:47264181-47264200 MS.gene066124:CDS 25.0%
!! AAGGATAAAAAAAACGGATT+CGG + chr1.4:47265020-47265039 None:intergenic 25.0%
!! GAATGGTTTTTATGCAAAAT+AGG - chr1.4:47264670-47264689 MS.gene066124:intron 25.0%
!! GATATATTCAGGTCTTTTAT+TGG - chr1.4:47266178-47266197 MS.gene066124:intron 25.0%
!! TTTTAAACATCGAAATTGCT+TGG + chr1.4:47265723-47265742 None:intergenic 25.0%
!!! ACTAAAATTTTGGAAAGGAA+AGG + chr1.4:47265336-47265355 None:intergenic 25.0%
!!! AGGTTTTCAGGTAATAATAA+TGG - chr1.4:47266956-47266975 MS.gene066124:CDS 25.0%
!!! ATTGGTAATTTTTTTTGTGG+TGG + chr1.4:47265098-47265117 None:intergenic 25.0%
!!! GAAGAGTTTTGAGAAAAATA+AGG - chr1.4:47264174-47264193 MS.gene066124:CDS 25.0%
!!! TCATTGGTTTTTTTTTTTGG+TGG + chr1.4:47265197-47265216 None:intergenic 25.0%
!!! TGGGTTTTTTTTTTTTGTGA+TGG + chr1.4:47264982-47265001 None:intergenic 25.0%
!!! TGTTTTTTTGACAGATAGAA+TGG - chr1.4:47264653-47264672 MS.gene066124:intron 25.0%
!!! TTGTTTGGAATTGAAACTTT+TGG + chr1.4:47266606-47266625 None:intergenic 25.0%
!!! TTTTTTTTTTTGTGATGGTC+GGG + chr1.4:47264977-47264996 None:intergenic 25.0%
AAAAAAATATGCAAGATCCG+GGG - chr1.4:47264916-47264935 MS.gene066124:CDS 30.0%
AACCAAACTAATTTCATTGC+TGG - chr1.4:47266875-47266894 MS.gene066124:CDS 30.0%
AACCAGCAATGAAATTAGTT+TGG + chr1.4:47266880-47266899 None:intergenic 30.0%
AAGAACAGAAACAGATCTTT+CGG + chr1.4:47265924-47265943 None:intergenic 30.0%
AATAATTCAGAAATCCAAGG+TGG - chr1.4:47263620-47263639 MS.gene066124:CDS 30.0%
ACAAAGAGCTATTCAACAAT+TGG - chr1.4:47265856-47265875 MS.gene066124:intron 30.0%
AGAGATGGTTATTGTTTCAT+GGG - chr1.4:47266851-47266870 MS.gene066124:CDS 30.0%
AGTTGGTCATGGTTTAATAA+AGG + chr1.4:47264855-47264874 None:intergenic 30.0%
ATATGGTACAGGTTTCAAAT+TGG - chr1.4:47266402-47266421 MS.gene066124:intron 30.0%
ATTAGCGAAACAAATGAGTT+TGG - chr1.4:47267079-47267098 MS.gene066124:CDS 30.0%
ATTCATGTTTGATTCTATGG+TGG + chr1.4:47264829-47264848 None:intergenic 30.0%
CAAAGAGCTATTCAACAATT+GGG - chr1.4:47265857-47265876 MS.gene066124:intron 30.0%
CACTTAATAAAGAAGTAAGG+AGG + chr1.4:47266302-47266321 None:intergenic 30.0%
CGACACTTAATAAAGAAGTA+AGG + chr1.4:47266305-47266324 None:intergenic 30.0%
GAAGTTGTTAATGTTAATGG+TGG - chr1.4:47264130-47264149 MS.gene066124:CDS 30.0%
GTGAATGTTAGAAACAATTC+AGG - chr1.4:47266674-47266693 MS.gene066124:CDS 30.0%
GTTAATTAACATGCTTGATG+AGG - chr1.4:47264324-47264343 MS.gene066124:CDS 30.0%
TAGAGATGGTTATTGTTTCA+TGG - chr1.4:47266850-47266869 MS.gene066124:CDS 30.0%
TCATGAAAATGAGTGTTTGA+AGG + chr1.4:47263655-47263674 None:intergenic 30.0%
TCATGTTAACAATATGGTAC+AGG - chr1.4:47266391-47266410 MS.gene066124:intron 30.0%
TCATTGAAGTCGATATATTC+AGG - chr1.4:47266167-47266186 MS.gene066124:intron 30.0%
TTTCTAACATTCACACCAAT+AGG + chr1.4:47266668-47266687 None:intergenic 30.0%
! AAAAAAAAACGGATTCGGAT+TGG + chr1.4:47265227-47265246 None:intergenic 30.0%
! AAAAGTATAGCGAGTACTTA+CGG + chr1.4:47265977-47265996 None:intergenic 30.0%
! GTTCTTTCAAGTAATTGAGT+TGG - chr1.4:47264472-47264491 MS.gene066124:intron 30.0%
! TAAAAAAAACGGATTCGGAT+TGG + chr1.4:47265015-47265034 None:intergenic 30.0%
! TAATGTTAATGGTGGGATTA+AGG - chr1.4:47264138-47264157 MS.gene066124:CDS 30.0%
! TTCTTCCTAGTTGAATGTTT+TGG + chr1.4:47267051-47267070 None:intergenic 30.0%
!! AAAATTTTGGAAAGGAAAGG+AGG + chr1.4:47265333-47265352 None:intergenic 30.0%
!! ACTAATTTCATTGCTGGTTT+CGG - chr1.4:47266881-47266900 MS.gene066124:CDS 30.0%
!!! CGGATTGGTAATTTTTTTTG+TGG + chr1.4:47265101-47265120 None:intergenic 30.0%
!!! GTTTTTGGAATTGAAAGAGT+CGG - chr1.4:47266039-47266058 MS.gene066124:intron 30.0%
!!! TTTGGATTGTTTTGGTTTGA+AGG - chr1.4:47265580-47265599 MS.gene066124:intron 30.0%
!!! TTTTTTTTTTGTGATGGTCG+GGG + chr1.4:47264976-47264995 None:intergenic 30.0%
AAAATCCGGTAACAATTGTG+CGG + chr1.4:47267158-47267177 None:intergenic 35.0%
AAACAATTACCAATCCTGCA+AGG - chr1.4:47265053-47265072 MS.gene066124:CDS 35.0%
AATGTACATGGAAGAGATGA+AGG - chr1.4:47266469-47266488 MS.gene066124:CDS 35.0%
ACGGACGTTAAACTATTCAA+AGG + chr1.4:47266075-47266094 None:intergenic 35.0%
AGAACAGAAACAGATCTTTC+GGG + chr1.4:47265923-47265942 None:intergenic 35.0%
ATATCACAACCAAATGCAGA+TGG - chr1.4:47265622-47265641 MS.gene066124:intron 35.0%
ATGTGTTTGTCTGAATCCTT+GGG + chr1.4:47266241-47266260 None:intergenic 35.0%
CAAAACAAACAGGACTTACT+AGG - chr1.4:47266266-47266285 MS.gene066124:intron 35.0%
CAATATCCAATGGAGGAAAT+CGG - chr1.4:47266905-47266924 MS.gene066124:CDS 35.0%
CATTAAGCTTACATGCTCAA+GGG - chr1.4:47263981-47264000 MS.gene066124:CDS 35.0%
CATTCAACTAGGAAGAAGAT+TGG - chr1.4:47267054-47267073 MS.gene066124:CDS 35.0%
CCAAACCAAAACATTCAACT+AGG - chr1.4:47267043-47267062 MS.gene066124:CDS 35.0%
GAATGATCCATCATAATGCT+TGG - chr1.4:47265879-47265898 MS.gene066124:intron 35.0%
GAGTAATTGATGTAACCTGA+TGG + chr1.4:47263680-47263699 None:intergenic 35.0%
GATGATAGACAAAGTAGAGA+TGG - chr1.4:47266836-47266855 MS.gene066124:CDS 35.0%
GTTGAGAAAAACAAGGTTAC+CGG + chr1.4:47263729-47263748 None:intergenic 35.0%
TCATTAAGCTTACATGCTCA+AGG - chr1.4:47263980-47263999 MS.gene066124:CDS 35.0%
TCATTGGACTTCACATGATT+CGG + chr1.4:47266776-47266795 None:intergenic 35.0%
TCGGTGATTGAAGAATTTCA+TGG + chr1.4:47266757-47266776 None:intergenic 35.0%
TGTGCTAGTAACAAGTGAAA+TGG - chr1.4:47265301-47265320 MS.gene066124:intron 35.0%
TTCCAAACAAGACATTCCTA+TGG - chr1.4:47266616-47266635 MS.gene066124:CDS 35.0%
TTTGAACAAGTTGCAGGAAT+TGG - chr1.4:47265656-47265675 MS.gene066124:intron 35.0%
! AACCATAGGAATGTCTTGTT+TGG + chr1.4:47266621-47266640 None:intergenic 35.0%
! ACAATTGTTACCGGATTTTG+TGG - chr1.4:47267159-47267178 MS.gene066124:CDS 35.0%
! CTCATTTTCATGAATCCATC+AGG - chr1.4:47263662-47263681 MS.gene066124:CDS 35.0%
! GTGGTTTCTTTGGATTGTTT+TGG - chr1.4:47265572-47265591 MS.gene066124:intron 35.0%
! GTTTGATTTCAGTTATCCCA+AGG - chr1.4:47266222-47266241 MS.gene066124:intron 35.0%
! TCTTATTCGCAGCTCTAATT+TGG + chr1.4:47265760-47265779 None:intergenic 35.0%
!! CAAGTAATTGAGTTGGTAAC+TGG - chr1.4:47264479-47264498 MS.gene066124:intron 35.0%
!! TCGGATTGGTAATTGTTCAT+GGG + chr1.4:47265001-47265020 None:intergenic 35.0%
!! TCGGATTGGTAATTGTTCAT+TGG + chr1.4:47265001-47265020 None:intergenic 35.0%
!! TTCGGATTGGTAATTGTTCA+TGG + chr1.4:47265002-47265021 None:intergenic 35.0%
!! TTTGCTTGATTTGTTGTCCT+CGG + chr1.4:47266513-47266532 None:intergenic 35.0%
!!! AATTTTTTTTGTGGTGGCTG+AGG + chr1.4:47265092-47265111 None:intergenic 35.0%
!!! CCTAGTTGAATGTTTTGGTT+TGG + chr1.4:47267046-47267065 None:intergenic 35.0%
!!! TGGTTTTTTTTTTTGGTGGC+CGG + chr1.4:47265193-47265212 None:intergenic 35.0%
AATCTTCCGATTTCCTCCAT+TGG + chr1.4:47266914-47266933 None:intergenic 40.0%
AATGGTGTTTCACTCACTCT+TGG - chr1.4:47266974-47266993 MS.gene066124:CDS 40.0%
ACAAGAAAGAGTTCCAACCT+CGG - chr1.4:47266571-47266590 MS.gene066124:CDS 40.0%
ACACCAATAGGTGAAGTTGA+TGG + chr1.4:47266656-47266675 None:intergenic 40.0%
ACACCATCAACTTCACCTAT+TGG - chr1.4:47266650-47266669 MS.gene066124:CDS 40.0%
AGAGCTGCGAATAAGAGTTT+GGG - chr1.4:47265764-47265783 MS.gene066124:intron 40.0%
AGGAAATCACCATCTGCATT+TGG + chr1.4:47265634-47265653 None:intergenic 40.0%
ATGAAGGATCAAGAGCTGAA+TGG - chr1.4:47266485-47266504 MS.gene066124:CDS 40.0%
ATGCTCGCACTCGTTATTAA+AGG + chr1.4:47266333-47266352 None:intergenic 40.0%
ATGTACATTTCCTCCACCAT+TGG + chr1.4:47266458-47266477 None:intergenic 40.0%
CAATTCAGGATTCAGCTTCA+CGG - chr1.4:47266688-47266707 MS.gene066124:CDS 40.0%
CACATGCTTGCAAAACAAAC+AGG - chr1.4:47266256-47266275 MS.gene066124:intron 40.0%
CATGTGTTTGTCTGAATCCT+TGG + chr1.4:47266242-47266261 None:intergenic 40.0%
CCTCATTGTGACACATTATC+AGG - chr1.4:47267001-47267020 MS.gene066124:CDS 40.0%
GGAAATCGGAAGATTTGATG+CGG - chr1.4:47266919-47266938 MS.gene066124:CDS 40.0%
GTTGTGATCACTACTAGGAT+TGG + chr1.4:47265266-47265285 None:intergenic 40.0%
TAAATGCTCGAGTTCGTCTT+TGG - chr1.4:47266429-47266448 MS.gene066124:intron 40.0%
TAGAGCTGCGAATAAGAGTT+TGG - chr1.4:47265763-47265782 MS.gene066124:intron 40.0%
TCAACATGCAGAATCCAAAG+AGG - chr1.4:47267128-47267147 MS.gene066124:CDS 40.0%
TGGTTTCGGTCAATATCCAA+TGG - chr1.4:47266895-47266914 MS.gene066124:CDS 40.0%
TGTGAGTTGTGATCACTACT+AGG + chr1.4:47265271-47265290 None:intergenic 40.0%
TGTTGGAGAATCTTCAACTG+CGG - chr1.4:47264198-47264217 MS.gene066124:CDS 40.0%
TTGGGAGAAGATGATAGCTT+TGG - chr1.4:47265782-47265801 MS.gene066124:intron 40.0%
TTTCATCGAAGGATCGTCAT+CGG + chr1.4:47266540-47266559 None:intergenic 40.0%
TTTCGGTCAATATCCAATGG+AGG - chr1.4:47266898-47266917 MS.gene066124:CDS 40.0%
! AATGGTGGAGGAAATGTACA+TGG - chr1.4:47266457-47266476 MS.gene066124:CDS 40.0%
! ACTTTTGGATTCTGTTTCCG+AGG + chr1.4:47266591-47266610 None:intergenic 40.0%
! AGCTTTGGTGGCAAAATTGA+AGG - chr1.4:47265797-47265816 MS.gene066124:intron 40.0%
! AGTTCGTCTTTGGAAACCAA+TGG - chr1.4:47266439-47266458 MS.gene066124:intron 40.0%
! CAATTTGCACCAAGGTTTTC+AGG - chr1.4:47266944-47266963 MS.gene066124:CDS 40.0%
! CCTGATAATGTGTCACAATG+AGG + chr1.4:47267004-47267023 None:intergenic 40.0%
! GCTTTGGTGGCAAAATTGAA+GGG - chr1.4:47265798-47265817 MS.gene066124:intron 40.0%
! GGTGTTGAAACTGAAACCAT+AGG + chr1.4:47266635-47266654 None:intergenic 40.0%
!! ATAAGTTCTGGTGTTGTTGG+TGG + chr1.4:47263787-47263806 None:intergenic 40.0%
!! CTTGTTTTTCTCAACTCAGC+CGG - chr1.4:47263734-47263753 MS.gene066124:CDS 40.0%
!! GAGATAAGTTCTGGTGTTGT+TGG + chr1.4:47263790-47263809 None:intergenic 40.0%
!!! GGATTGTTTTGGTTTGAAGG+TGG - chr1.4:47265583-47265602 MS.gene066124:intron 40.0%
!!! GGTTTTTTTTTTTGGTGGCC+GGG + chr1.4:47265192-47265211 None:intergenic 40.0%
!!! GTTTTTTTTTTTGGTGGCCG+GGG + chr1.4:47265191-47265210 None:intergenic 40.0%
AAAGAAGTAAGGAGGTCACC+TGG + chr1.4:47266294-47266313 None:intergenic 45.0%
AATGCTTGGAGACCTCAAAG+AGG - chr1.4:47265893-47265912 MS.gene066124:intron 45.0%
AATTGTGCGGCAAACCTCTT+TGG + chr1.4:47267145-47267164 None:intergenic 45.0%
ATCAGTACATGGCCATCATG+AGG - chr1.4:47263853-47263872 MS.gene066124:CDS 45.0%
ATGCGGAACAATTTGCACCA+AGG - chr1.4:47266936-47266955 MS.gene066124:CDS 45.0%
ATTACCAATCCTGCAAGGTC+CGG - chr1.4:47265058-47265077 MS.gene066124:CDS 45.0%
CATGAGGTTTCTGCTTTGCA+TGG - chr1.4:47263869-47263888 MS.gene066124:CDS 45.0%
GAATCTTCAACTGCGGTTAG+TGG - chr1.4:47264205-47264224 MS.gene066124:CDS 45.0%
GAGGTCTCCAAGCATTATGA+TGG + chr1.4:47265889-47265908 None:intergenic 45.0%
GAGGTTGGAACTCTTTCTTG+TGG + chr1.4:47266572-47266591 None:intergenic 45.0%
GCAAAGCAGAAACCTCATGA+TGG + chr1.4:47263868-47263887 None:intergenic 45.0%
GGAACTCTTTCTTGTGGAGT+TGG + chr1.4:47266566-47266585 None:intergenic 45.0%
GGAGATTGTTTGTAGCGCTA+GGG + chr1.4:47265702-47265721 None:intergenic 45.0%
GTATAGCGAGTACTTACGGA+TGG + chr1.4:47265973-47265992 None:intergenic 45.0%
GTGGCAAAATTGAAGGGTCT+AGG - chr1.4:47265804-47265823 MS.gene066124:intron 45.0%
GTTTGCCGCACAATTGTTAC+CGG - chr1.4:47267150-47267169 MS.gene066124:CDS 45.0%
TCCTCGTTTGAACAAGTTGC+AGG - chr1.4:47265650-47265669 MS.gene066124:intron 45.0%
TCGGCAGAACAATCAGTACA+TGG - chr1.4:47263842-47263861 MS.gene066124:CDS 45.0%
TGCTTCAAACGGCTGTGTTT+CGG - chr1.4:47264048-47264067 MS.gene066124:CDS 45.0%
TGGAGATTGTTTGTAGCGCT+AGG + chr1.4:47265703-47265722 None:intergenic 45.0%
TTCAGCTTCACGGAACTTGA+TGG - chr1.4:47266698-47266717 MS.gene066124:CDS 45.0%
TTGGATTCTGTTTCCGAGGT+TGG + chr1.4:47266587-47266606 None:intergenic 45.0%
! ATTCGCAGCTCTAATTTGGC+CGG + chr1.4:47265756-47265775 None:intergenic 45.0%
! CGGCTGAGTTGAGAAAAACA+AGG + chr1.4:47263736-47263755 None:intergenic 45.0%
! TCCTGCAACTTGTTCAAACG+AGG + chr1.4:47265654-47265673 None:intergenic 45.0%
! TCGTCTTTGGAAACCAATGG+TGG - chr1.4:47266442-47266461 MS.gene066124:intron 45.0%
! TCTTTGGAAACCAATGGTGG+AGG - chr1.4:47266445-47266464 MS.gene066124:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG - chr1.4:47264882-47264901 MS.gene066124:CDS 45.0%
!! CTGTTTCTGTTCTTCGTGCT+TGG - chr1.4:47265930-47265949 MS.gene066124:intron 45.0%
!! GAAATCCAAGGTGGTTCTGA+CGG - chr1.4:47263629-47263648 MS.gene066124:CDS 45.0%
!! GGAGAAGATGATAGCTTTGG+TGG - chr1.4:47265785-47265804 MS.gene066124:intron 45.0%
!! TTGGTGGTGGTGATGGAAAT+GGG - chr1.4:47264242-47264261 MS.gene066124:CDS 45.0%
!!! GGAGTTGGTGTTTTCATCGA+AGG + chr1.4:47266551-47266570 None:intergenic 45.0%
!!! ATATATTTTTTTTTTTTTTG+TGG + chr1.4:47265480-47265499 None:intergenic 5.0%
AAAACAAGGTTACCGGCGTG+TGG + chr1.4:47263722-47263741 None:intergenic 50.0%
AACAGGACTTACTAGGAGCC+AGG - chr1.4:47266273-47266292 MS.gene066124:intron 50.0%
AAGCAAGTCCAAAGCGAACG+AGG - chr1.4:47266729-47266748 MS.gene066124:CDS 50.0%
ACTGATTGTTCTGCCGAGAG+CGG + chr1.4:47263839-47263858 None:intergenic 50.0%
AGCTTACATGCTCAAGGGTC+AGG - chr1.4:47263986-47264005 MS.gene066124:CDS 50.0%
ATTCACGCGCCGCTGAATTA+GGG + chr1.4:47263937-47263956 None:intergenic 50.0%
CTTCAAACGGCTGTGTTTCG+GGG - chr1.4:47264050-47264069 MS.gene066124:CDS 50.0%
CTTTCGGGCAATCCTCTTTG+AGG + chr1.4:47265908-47265927 None:intergenic 50.0%
GCTTCAAACGGCTGTGTTTC+GGG - chr1.4:47264049-47264068 MS.gene066124:CDS 50.0%
TCAACTGCGGTTAGTGGAGA+AGG - chr1.4:47264211-47264230 MS.gene066124:CDS 50.0%
TCAAGAGCTGAATGGTTCCG+AGG - chr1.4:47266493-47266512 MS.gene066124:CDS 50.0%
TCATGGTTCCTCGTTCGCTT+TGG + chr1.4:47266740-47266759 None:intergenic 50.0%
TCGGGTTCGTCTGCTTCAAA+CGG - chr1.4:47264037-47264056 MS.gene066124:CDS 50.0%
TTACCAATCCTGCAAGGTCC+GGG - chr1.4:47265059-47265078 MS.gene066124:CDS 50.0%
! AGTGGAGAAGGTGGTTCTGT+TGG - chr1.4:47264223-47264242 MS.gene066124:CDS 50.0%
!! AGTTCTGGTGTTGTTGGTGG+TGG + chr1.4:47263784-47263803 None:intergenic 50.0%
!! GTTGGTGGTGGTGATGGAAA+TGG - chr1.4:47264241-47264260 MS.gene066124:CDS 50.0%
AATCCACACGCGCTACTCAG+GGG - chr1.4:47263954-47263973 MS.gene066124:CDS 55.0%
ACTGCGGTTAGTGGAGAAGG+TGG - chr1.4:47264214-47264233 MS.gene066124:CDS 55.0%
CACATGTTGTACCGCATGCG+CGG + chr1.4:47263902-47263921 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG + chr1.4:47264880-47264899 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG - chr1.4:47264877-47264896 MS.gene066124:CDS 55.0%
CTCACGAGGACAGTTGGTCA+TGG + chr1.4:47264866-47264885 None:intergenic 55.0%
CTGATTGTTCTGCCGAGAGC+GGG + chr1.4:47263838-47263857 None:intergenic 55.0%
GAATCCACACGCGCTACTCA+GGG - chr1.4:47263953-47263972 MS.gene066124:CDS 55.0%
GATTCACGCGCCGCTGAATT+AGG + chr1.4:47263938-47263957 None:intergenic 55.0%
GCTAAGCTCACGAGGACAGT+TGG + chr1.4:47264872-47264891 None:intergenic 55.0%
GTGGCGCGTGAGATAAGTTC+TGG + chr1.4:47263799-47263818 None:intergenic 55.0%
TACCAATCCTGCAAGGTCCG+GGG - chr1.4:47265060-47265079 MS.gene066124:CDS 55.0%
TGAATCCACACGCGCTACTC+AGG - chr1.4:47263952-47263971 MS.gene066124:CDS 55.0%
TTGTAGCGCTAGGGCAGTGT+AGG + chr1.4:47265693-47265712 None:intergenic 55.0%
! GAAGGTGGTTCTGTTGGTGG+TGG - chr1.4:47264229-47264248 MS.gene066124:CDS 55.0%
! GGAGAAGGTGGTTCTGTTGG+TGG - chr1.4:47264226-47264245 MS.gene066124:CDS 55.0%
!! CTGGTGTTGTTGGTGGTGGA+GGG + chr1.4:47263780-47263799 None:intergenic 55.0%
!! GGTTCTGTTGGTGGTGGTGA+TGG - chr1.4:47264235-47264254 MS.gene066124:CDS 55.0%
!! TCTGGTGTTGTTGGTGGTGG+AGG + chr1.4:47263781-47263800 None:intergenic 55.0%
AACCCCGGACCTTGCAGGAT+TGG + chr1.4:47265065-47265084 None:intergenic 60.0%
AACCCCGGATTGTGGTGGCA+GGG + chr1.4:47264949-47264968 None:intergenic 60.0%
AACCCCTGCCACCACAATCC+GGG - chr1.4:47264943-47264962 MS.gene066124:CDS 60.0%
AACTCAGCCGGCAATCACCC+CGG - chr1.4:47263746-47263765 MS.gene066124:CDS 60.0%
ACAAGGTTACCGGCGTGTGG+CGG + chr1.4:47263719-47263738 None:intergenic 60.0%
ACATGCTCAAGGGTCAGGCG+AGG - chr1.4:47263991-47264010 MS.gene066124:CDS 60.0%
ACGCGCCGCTGAATTAGGGT+CGG + chr1.4:47263933-47263952 None:intergenic 60.0%
ACGCGCGTGTTCCCATTGGT+GGG - chr1.4:47264014-47264033 MS.gene066124:CDS 60.0%
AGACGAACCCGACCCACCAA+TGG + chr1.4:47264029-47264048 None:intergenic 60.0%
AGCGGGACTCCGACAAACTG+TGG + chr1.4:47263821-47263840 None:intergenic 60.0%
AGTGTTGCCGGGGTGATTGC+CGG + chr1.4:47263756-47263775 None:intergenic 60.0%
ATGTTGTACCGCATGCGCGG+TGG + chr1.4:47263899-47263918 None:intergenic 60.0%
CACGCGCCACCACAGTTTGT+CGG - chr1.4:47263809-47263828 MS.gene066124:CDS 60.0%
CGCGCATGCGGTACAACATG+TGG - chr1.4:47263900-47263919 MS.gene066124:CDS 60.0%
GAACCCCTGCCACCACAATC+CGG - chr1.4:47264942-47264961 MS.gene066124:CDS 60.0%
GAAGGCCGTCAGAACCACCT+TGG + chr1.4:47263637-47263656 None:intergenic 60.0%
GACGAACCCGACCCACCAAT+GGG + chr1.4:47264028-47264047 None:intergenic 60.0%
GGGACTCCGACAAACTGTGG+TGG + chr1.4:47263818-47263837 None:intergenic 60.0%
GTTCGAACCCCGGATTGTGG+TGG + chr1.4:47264954-47264973 None:intergenic 60.0%
GTTTGTCGGAGTCCCGCTCT+CGG - chr1.4:47263823-47263842 MS.gene066124:CDS 60.0%
TGTTGTACCGCATGCGCGGT+GGG + chr1.4:47263898-47263917 None:intergenic 60.0%
! CGTGTTCCCATTGGTGGGTC+GGG - chr1.4:47264019-47264038 MS.gene066124:CDS 60.0%
! GCGTGTTCCCATTGGTGGGT+CGG - chr1.4:47264018-47264037 MS.gene066124:CDS 60.0%
!! GTGGTGGAGGGAAGTGTTGC+CGG + chr1.4:47263768-47263787 None:intergenic 60.0%
!! TGGTGGAGGGAAGTGTTGCC+GGG + chr1.4:47263767-47263786 None:intergenic 60.0%
AAGGTCCGGGGTTCGAACCC+CGG - chr1.4:47265171-47265190 MS.gene066124:intron 65.0%
ACCCCGGATTGTGGTGGCAG+GGG + chr1.4:47264948-47264967 None:intergenic 65.0%
ACCCCTGCCACCACAATCCG+GGG - chr1.4:47264944-47264963 MS.gene066124:CDS 65.0%
ATGGCTTCCCACCGCGCATG+CGG - chr1.4:47263888-47263907 MS.gene066124:CDS 65.0%
CCCCGCCGACCCTAATTCAG+CGG - chr1.4:47263925-47263944 MS.gene066124:CDS 65.0%
CCGCTGAATTAGGGTCGGCG+GGG + chr1.4:47263928-47263947 None:intergenic 65.0%
CGCCGCTGAATTAGGGTCGG+CGG + chr1.4:47263930-47263949 None:intergenic 65.0%
GAACCCCGGATTGTGGTGGC+AGG + chr1.4:47264950-47264969 None:intergenic 65.0%
GACGCGCGTGTTCCCATTGG+TGG - chr1.4:47264013-47264032 MS.gene066124:CDS 65.0%
GAGGACGCGCGTGTTCCCAT+TGG - chr1.4:47264010-47264029 MS.gene066124:CDS 65.0%
GATGGTCGGGGTTCGAACCC+CGG + chr1.4:47264964-47264983 None:intergenic 65.0%
GCCGCTGAATTAGGGTCGGC+GGG + chr1.4:47263929-47263948 None:intergenic 65.0%
GGGGTTCGAACCCCGGATTG+TGG + chr1.4:47264957-47264976 None:intergenic 65.0%
GGTGGCTGAGGTTCGAACCC+CGG + chr1.4:47265080-47265099 None:intergenic 65.0%
GTTCGAACCCCGGACCTTGC+AGG + chr1.4:47265070-47265089 None:intergenic 65.0%
!! GGTGGAGGGAAGTGTTGCCG+GGG + chr1.4:47263766-47263785 None:intergenic 65.0%
AGGTTACCGGCGTGTGGCGG+CGG + chr1.4:47263716-47263735 None:intergenic 70.0%
CAGCCCCTGAGTAGCGCGTG+TGG + chr1.4:47263960-47263979 None:intergenic 70.0%
GGTGGCAGGGGTTCGAACCC+CGG + chr1.4:47264936-47264955 None:intergenic 70.0%
GGTGGCCGGGGTTCGAACCC+CGG + chr1.4:47265179-47265198 None:intergenic 75.0%
! CCGCAACCGCCGCCACACGC+CGG - chr1.4:47263707-47263726 MS.gene066124:CDS 80.0%
! CCGGCGTGTGGCGGCGGTTG+CGG + chr1.4:47263710-47263729 None:intergenic 80.0%
! TGGCGGCGGTTGCGGCGCGT+CGG + chr1.4:47263702-47263721 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 47263602 47267186 47263602 ID=MS.gene066124
chr1.4 mRNA 47263602 47267186 47263602 ID=MS.gene066124.t1;Parent=MS.gene066124
chr1.4 exon 47266443 47267186 47266443 ID=MS.gene066124.t1.exon1;Parent=MS.gene066124.t1
chr1.4 CDS 47266443 47267186 47266443 ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1
chr1.4 exon 47264813 47265186 47264813 ID=MS.gene066124.t1.exon2;Parent=MS.gene066124.t1
chr1.4 CDS 47264813 47265186 47264813 ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1
chr1.4 exon 47264494 47264554 47264494 ID=MS.gene066124.t1.exon3;Parent=MS.gene066124.t1
chr1.4 CDS 47264494 47264554 47264494 ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1
chr1.4 exon 47263602 47264375 47263602 ID=MS.gene066124.t1.exon4;Parent=MS.gene066124.t1
chr1.4 CDS 47263602 47264375 47263602 ID=cds.MS.gene066124.t1;Parent=MS.gene066124.t1
Gene Sequence

>MS.gene066124

ATGGCAACATATTTTCATAATAATTCAGAAATCCAAGGTGGTTCTGACGGCCTTCAAACACTCATTTTCATGAATCCATCAGGTTACATCAATTACTCCGACGCGCCGCAACCGCCGCCACACGCCGGTAACCTTGTTTTTCTCAACTCAGCCGGCAATCACCCCGGCAACACTTCCCTCCACCACCAACAACACCAGAACTTATCTCACGCGCCACCACAGTTTGTCGGAGTCCCGCTCTCGGCAGAACAATCAGTACATGGCCATCATGAGGTTTCTGCTTTGCATGGCTTCCCACCGCGCATGCGGTACAACATGTGGAACCCCGCCGACCCTAATTCAGCGGCGCGTGAATCCACACGCGCTACTCAGGGGCTGTCATTAAGCTTACATGCTCAAGGGTCAGGCGAGGACGCGCGTGTTCCCATTGGTGGGTCGGGTTCGTCTGCTTCAAACGGCTGTGTTTCGGGGATACAGAGTGTGTTATTGAGTTCTAAGTATTTGAAAGCTACACAAGAATTACTTGATGAAGTTGTTAATGTTAATGGTGGGATTAAGGTTGAAAATGTTAAGAAGAGTTTTGAGAAAAATAAGGTTGTTGGAGAATCTTCAACTGCGGTTAGTGGAGAAGGTGGTTCTGTTGGTGGTGGTGATGGAAATGGGAAACGTAGCACTGAGTTATCAACTACTGAGAGACAAGAAATTCAGATGAAGAAAGCTAAGTTAATTAACATGCTTGATGAGGTAACTTTTGAGTTAATTAAATTTAGTTTTGGTTAACTTTTGAGTTAATTAAAGTTACTCTGTTTACCTAATATTGTTTTTTTTTTTGACATACTCTGTTCACCAAATTTAGTTCCTATCAAATTTGTTCTTTCAAGTAATTGAGTTGGTAACTGGTAATAGTAGTCTAATTAAGAAGTTTTAGTGCATATTTAAATTCATTTTTGAGAGAGTTAAAAATGATTTTGAACATTTGAAATTGATTTTACTTTTTAAGTATGATTAAGGTTTCTAATCAGAATTTATGTTTTTTAGAATGGTTTTTTTATGTTTTTTTGACAGATAGAATGGTTTTTATGCAAAATAGGATTTATAGCTTTCGATTCAAAACAATTTTTAACTCAAATTTATTTAATTTTTGGTGTAAAAATTTATTGTTCAAATTCACTTTTAAGTGAAAGTATTTAAATATGAATTATTTTTAATTTAAATCAATTTTTACCACCATAGAATCAAACATGAATTAACCTTTATTAAACCATGACCAACTGTCCTCGTGAGCTTAGCTCAGTTGGTATGGACAATGCATAAAAAAAAATATGCAAGATCCGGGGTTCGAACCCCTGCCACCACAATCCGGGGTTCGAACCCCGACCATCACAAAAAAAAAAAACCCATGAACAATTACCAATCCGAATCCGTTTTTTTTATCCTTTTTTTTTTTAAGAAAACAATTACCAATCCTGCAAGGTCCGGGGTTCGAACCTCAGCCACCACAAAAAAAATTACCAATCCGAATCCGTTTTTTTTATCCTTTTTTTTTAAGGAAACAATTACCAATCCTGCAAGGTCCGGGGTTCGAACCCCGGCCACCAAAAAAAAAAACCAATGAACAATTACCAATCCGAATCCGTTTTTTTTTTTTAAGGAAACAATTACCAATCCTAGTAGTGATCACAACTCACAAGTTTATTGATGTGCTAGTAACAAGTGAAATGGCTACTTCCTCCTTTCCTTTCCAAAATTTTAGTTTTTAGATTTTTTATTTTTAATTATCTATCATTTTAAAATTCTAAGGTTATACGTATTTCTTACTTTTGTCAAATATTTCCATAAAAGTATTTGCAAGAAATATTATAGTCAATAGTATCACCACAAAAAAAAAAAAAATATATATAAAACTTCATCAATAAACAATTACTTGTTAGTGTAAACAATATTAAACTCGATACTAAAAATGAATTAATGTGGTTTCTTTGGATTGTTTTGGTTTGAAGGTGGAACAAAGATACAGACAATATCACAACCAAATGCAGATGGTGATTTCCTCGTTTGAACAAGTTGCAGGAATTGGTTCAGCAAGAACCTACACTGCCCTAGCGCTACAAACAATCTCCAAGCAATTTCGATGTTTAAAAGATGCAATTACCGGCCAAATTAGAGCTGCGAATAAGAGTTTGGGAGAAGATGATAGCTTTGGTGGCAAAATTGAAGGGTCTAGGCTCAAATATGTTGATCATCATTTAAGACAACAAAGAGCTATTCAACAATTGGGAATGATCCATCATAATGCTTGGAGACCTCAAAGAGGATTGCCCGAAAGATCTGTTTCTGTTCTTCGTGCTTGGCTTTTCGAACATTTTCTCCATCCGTAAGTACTCGCTATACTTTTTATGATACTATTAGAAAAGGTTGAAAGTAAATTAACATTTTAGTTTTTGGAATTGAAAGAGTCGGTCATTTTAGTCCTTTGAATAGTTTAACGTCCGTCAATTTAGTAATTTTTTAAAATTTAGCACACTATTTTCAACATTTTATGTTTATCTCGATGCAAAAAAGAGATCATTGAAGTCGATATATTCAGGTCTTTTATTGGTTTTGTGCTGAAACAATATGTGTTTGATTTCAGTTATCCCAAGGATTCAGACAAACACATGCTTGCAAAACAAACAGGACTTACTAGGAGCCAGGTGACCTCCTTACTTCTTTATTAAGTGTCGTTTTTCCTTTAATAACGAGTGCGAGCATCACATTCTCTGACTTACTATTTTCAAAATGCTTATTGATCATGTTAACAATATGGTACAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGTCTTTGGAAACCAATGGTGGAGGAAATGTACATGGAAGAGATGAAGGATCAAGAGCTGAATGGTTCCGAGGACAACAAATCAAGCAAAAATACCGATGACGATCCTTCGATGAAAACACCAACTCCACAAGAAAGAGTTCCAACCTCGGAAACAGAATCCAAAAGTTTCAATTCCAAACAAGACATTCCTATGGTTTCAGTTTCAACACCATCAACTTCACCTATTGGTGTGAATGTTAGAAACAATTCAGGATTCAGCTTCACGGAACTTGATGGAATAACACAAGCAAGTCCAAAGCGAACGAGGAACCATGAAATTCTTCAATCACCGAATCATGTGAAGTCCAATGAAACAACAACTAATAATGAACAAATTTCAATGAAATTTGGTGATGATAGACAAAGTAGAGATGGTTATTGTTTCATGGGAAACCAAACTAATTTCATTGCTGGTTTCGGTCAATATCCAATGGAGGAAATCGGAAGATTTGATGCGGAACAATTTGCACCAAGGTTTTCAGGTAATAATAATGGTGTTTCACTCACTCTTGGTTTGCCTCATTGTGACACATTATCAGGAACACATCAAAGTTTTATGCCAAACCAAAACATTCAACTAGGAAGAAGATTGGACATTAGCGAAACAAATGAGTTTGGTGACTCTTCAGCTGCATTTGAGAGTATCAACATGCAGAATCCAAAGAGGTTTGCCGCACAATTGTTACCGGATTTTGTGGCATAA

Protein sequence

>MS.gene066124.t1

MATYFHNNSEIQGGSDGLQTLIFMNPSGYINYSDAPQPPPHAGNLVFLNSAGNHPGNTSLHHQQHQNLSHAPPQFVGVPLSAEQSVHGHHEVSALHGFPPRMRYNMWNPADPNSAARESTRATQGLSLSLHAQGSGEDARVPIGGSGSSASNGCVSGIQSVLLSSKYLKATQELLDEVVNVNGGIKVENVKKSFEKNKVVGESSTAVSGEGGSVGGGDGNGKRSTELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQMVISSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANKSLGEDDSFGGKIEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKDQELNGSEDNKSSKNTDDDPSMKTPTPQERVPTSETESKSFNSKQDIPMVSVSTPSTSPIGVNVRNNSGFSFTELDGITQASPKRTRNHEILQSPNHVKSNETTTNNEQISMKFGDDRQSRDGYCFMGNQTNFIAGFGQYPMEEIGRFDAEQFAPRFSGNNNGVSLTLGLPHCDTLSGTHQSFMPNQNIQLGRRLDISETNEFGDSSAAFESINMQNPKRFAAQLLPDFVA