AlfalfaGEDB | MS.gene066165

M. sativa cultivar XinJiangDaYe / MS.gene066165

KEGG: -
GO: -
PFAM: PF12734.10

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066165.t1	PNX66177.1	88.5	78	9	0	1	78	1	78	3.20E-27	130.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066165.t1	A0A2K3KIR8	88.5	78	9	0	1	78	1	78	2.3e-27	130.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050363	MS.gene066165	0.821609	3.69E-53	-1.69E-46
MS.gene056408	MS.gene066165	0.816622	5.03E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066165.t1	MTR_2g069420	89.744	78	8	0	1	78	1	78	3.15e-39	124
MS.gene066165.t1	MTR_2g069430	91.026	78	5	1	1	78	1	76	1.67e-38	122
MS.gene066165.t1	MTR_1g040735	79.747	79	15	1	1	78	58	136	3.30e-36	119
MS.gene066165.t1	MTR_5g042360	78.481	79	16	1	1	78	1	79	4.45e-35	114
MS.gene066165.t1	MTR_1g040775	78.481	79	16	1	1	78	1	79	4.45e-35	114
MS.gene066165.t1	MTR_4g091090	83.750	80	11	1	1	78	1	80	7.60e-34	111
MS.gene066165.t1	MTR_2g069400	57.143	63	19	3	1	62	1	56	5.41e-14	60.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066165.t1	AT2G32190	50.000	78	32	4	1	78	1	71	1.34e-17	70.1
MS.gene066165.t1	AT2G32210	50.000	78	32	4	1	78	1	71	1.06e-16	67.8
MS.gene066165.t1	AT2G32200	43.210	81	36	5	1	78	1	74	2.22e-11	54.3
MS.gene066165.t1	AT2G32200	43.421	76	34	4	6	78	39	108	2.66e-11	55.1

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Find 32 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGATAACCCATTGGTGGT+GGG	0.561789	2.3:+26677249	None:intergenic
ACCAATGGGTTATCCTTCCA+AGG	0.585220	2.3:-26677243	MS.gene066165:CDS
AGCTTAAAAGCATATATCAA+GGG	0.622395	2.3:+26677118	None:intergenic
AGGATAACCCATTGGTGGTG+GGG	0.564664	2.3:+26677250	None:intergenic
ATCATATCCACCACCAGGTG+AGG	0.605203	2.3:-26677300	MS.gene066165:CDS
CAAACTACTAGCAGGGGTGA+TGG	0.586318	2.3:-26677182	MS.gene066165:CDS
CATCACCCCTGCTAGTAGTT+TGG	0.398219	2.3:+26677183	None:intergenic
CCAGACCAAACTACTAGCAG+GGG	0.657589	2.3:-26677188	MS.gene066165:CDS
CCAGTATCATATCCACCACC+AGG	0.598096	2.3:-26677305	MS.gene066165:CDS
CCCCTGCTAGTAGTTTGGTC+TGG	0.475028	2.3:+26677188	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCCAAGGATGTCTCTGAA+GGG	-	chr2.3:26677227-26677246	MS.gene066165:CDS	45.0%
TCCAGACCAAACTACTAGCA+GGG	-	chr2.3:26677267-26677286	MS.gene066165:CDS	45.0%
TCCTTGGAAGGATAACCCAT+TGG	+	chr2.3:26677217-26677236	None:intergenic	45.0%
TTCCAGACCAAACTACTAGC+AGG	-	chr2.3:26677266-26677285	MS.gene066165:CDS	45.0%
TTGGAAGGATAACCCATTGG+TGG	+	chr2.3:26677214-26677233	None:intergenic	45.0%
ATCATATCCACCACCAGGTG+AGG	-	chr2.3:26677156-26677175	MS.gene066165:CDS	50.0%
CAAACTACTAGCAGGGGTGA+TGG	-	chr2.3:26677274-26677293	MS.gene066165:CDS	50.0%
CATCACCCCTGCTAGTAGTT+TGG	+	chr2.3:26677276-26677295	None:intergenic	50.0%
CCAGACCAAACTACTAGCAG+GGG	-	chr2.3:26677268-26677287	MS.gene066165:CDS	50.0%
CCAGTATCATATCCACCACC+AGG	-	chr2.3:26677151-26677170	MS.gene066165:CDS	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	26677121	26677357	26677121	ID=MS.gene066165
chr2.3	mRNA	26677121	26677357	26677121	ID=MS.gene066165.t1;Parent=MS.gene066165
chr2.3	exon	26677121	26677357	26677121	ID=MS.gene066165.t1.exon1;Parent=MS.gene066165.t1
chr2.3	CDS	26677121	26677357	26677121	ID=cds.MS.gene066165.t1;Parent=MS.gene066165.t1

Gene Sequence	>MS.gene066165 ATGAGTCACTTTAACAATCAGCAACAAACCCCAGTATCATATCCACCACCAGGTGAGGCTTATTCTTCAGCTCCATATGTAACTGCCCCACCACCAATGGGTTATCCTTCCAAGGATGTCTCTGAAGGGTACCCTCAACAAAGGATTCCAGACCAAACTACTAGCAGGGGTGATGGTTTTTGGAAGGGATGTTGTGCTGCTATATGTTGCTGTTGTGCCCTTGATATATGCTTTTAA
Protein sequence	>MS.gene066165.t1 MSHFNNQQQTPVSYPPPGEAYSSAPYVTAPPPMGYPSKDVSEGYPQQRIPDQTTSRGDGFWKGCCAAICCCCALDICF