Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056408.t1 | AES89030.1 | 100 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 3.40E-35 | 157.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056408.t1 | G7JEX2 | 100.0 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 2.4e-35 | 157.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050363 | MS.gene056408 | 0.867481 | 1.33E-65 | -1.69E-46 |
MS.gene050381 | MS.gene056408 | 0.830377 | 3.04E-55 | -1.69E-46 |
MS.gene050883 | MS.gene056408 | 0.827688 | 1.36E-54 | -1.69E-46 |
MS.gene051127 | MS.gene056408 | 0.805253 | 1.46E-49 | -1.69E-46 |
MS.gene05141 | MS.gene056408 | 0.818687 | 1.72E-52 | -1.69E-46 |
MS.gene051946 | MS.gene056408 | 0.834329 | 3.19E-56 | -1.69E-46 |
MS.gene052164 | MS.gene056408 | -0.807572 | 4.73E-50 | -1.69E-46 |
MS.gene053549 | MS.gene056408 | 0.837164 | 6.11E-57 | -1.69E-46 |
MS.gene053826 | MS.gene056408 | 0.802345 | 5.86E-49 | -1.69E-46 |
MS.gene055154 | MS.gene056408 | 0.804611 | 1.99E-49 | -1.69E-46 |
MS.gene056310 | MS.gene056408 | 0.849389 | 3.34E-60 | -1.69E-46 |
MS.gene056311 | MS.gene056408 | 0.845418 | 4.11E-59 | -1.69E-46 |
MS.gene056313 | MS.gene056408 | 0.83217 | 1.10E-55 | -1.69E-46 |
MS.gene056408 | MS.gene057014 | 0.831776 | 1.38E-55 | -1.69E-46 |
MS.gene056408 | MS.gene058628 | 0.800922 | 1.15E-48 | -1.69E-46 |
MS.gene056408 | MS.gene058630 | 0.812986 | 3.22E-51 | -1.69E-46 |
MS.gene056408 | MS.gene059223 | 0.806101 | 9.69E-50 | -1.69E-46 |
MS.gene056408 | MS.gene059718 | -0.80107 | 1.07E-48 | -1.69E-46 |
MS.gene056408 | MS.gene06077 | -0.816171 | 6.34E-52 | -1.69E-46 |
MS.gene056408 | MS.gene060808 | 0.815354 | 9.65E-52 | -1.69E-46 |
MS.gene056408 | MS.gene061340 | -0.801006 | 1.10E-48 | -1.69E-46 |
MS.gene056408 | MS.gene062923 | -0.80549 | 1.30E-49 | -1.69E-46 |
MS.gene056408 | MS.gene063365 | 0.808804 | 2.59E-50 | -1.69E-46 |
MS.gene056408 | MS.gene063782 | 0.804181 | 2.44E-49 | -1.69E-46 |
MS.gene056408 | MS.gene063874 | 0.836648 | 8.27E-57 | -1.69E-46 |
MS.gene056408 | MS.gene064275 | 0.822597 | 2.18E-53 | -1.69E-46 |
MS.gene056408 | MS.gene064764 | 0.821349 | 4.23E-53 | -1.69E-46 |
MS.gene056408 | MS.gene065145 | 0.818334 | 2.07E-52 | -1.69E-46 |
MS.gene056408 | MS.gene065465 | 0.832306 | 1.02E-55 | -1.69E-46 |
MS.gene056408 | MS.gene066165 | 0.816622 | 5.03E-52 | -1.69E-46 |
MS.gene056408 | MS.gene07004 | 0.819189 | 1.32E-52 | -1.69E-46 |
MS.gene056408 | MS.gene070982 | 0.807043 | 6.13E-50 | -1.69E-46 |
MS.gene056408 | MS.gene071930 | -0.803582 | 3.25E-49 | -1.69E-46 |
MS.gene056408 | MS.gene072451 | 0.80216 | 6.40E-49 | -1.69E-46 |
MS.gene056408 | MS.gene072476 | 0.827152 | 1.83E-54 | -1.69E-46 |
MS.gene056408 | MS.gene072806 | 0.830979 | 2.16E-55 | -1.69E-46 |
MS.gene056408 | MS.gene07329 | -0.813756 | 2.18E-51 | -1.69E-46 |
MS.gene056408 | MS.gene074189 | 0.842103 | 3.17E-58 | -1.69E-46 |
MS.gene056408 | MS.gene07448 | 0.825226 | 5.26E-54 | -1.69E-46 |
MS.gene056408 | MS.gene08195 | 0.821793 | 3.34E-53 | -1.69E-46 |
MS.gene056408 | MS.gene20016 | 0.811326 | 7.40E-51 | -1.69E-46 |
MS.gene056408 | MS.gene20878 | -0.817978 | 2.49E-52 | -1.69E-46 |
MS.gene056408 | MS.gene21349 | 0.810436 | 1.15E-50 | -1.69E-46 |
MS.gene056408 | MS.gene21575 | 0.823298 | 1.49E-53 | -1.69E-46 |
MS.gene056408 | MS.gene22261 | 0.842389 | 2.66E-58 | -1.69E-46 |
MS.gene056408 | MS.gene22765 | 0.816176 | 6.33E-52 | -1.69E-46 |
MS.gene056408 | MS.gene22952 | 0.811548 | 6.63E-51 | -1.69E-46 |
MS.gene056408 | MS.gene24099 | 0.807718 | 4.41E-50 | -1.69E-46 |
MS.gene056408 | MS.gene24272 | 0.815145 | 1.07E-51 | -1.69E-46 |
MS.gene056408 | MS.gene24359 | 0.821047 | 4.97E-53 | -1.69E-46 |
MS.gene056408 | MS.gene24374 | 0.812294 | 4.56E-51 | -1.69E-46 |
MS.gene056408 | MS.gene24491 | 0.840507 | 8.34E-58 | -1.69E-46 |
MS.gene056408 | MS.gene27099 | 0.828151 | 1.05E-54 | -1.69E-46 |
MS.gene056408 | MS.gene27835 | 0.809751 | 1.62E-50 | -1.69E-46 |
MS.gene056408 | MS.gene28138 | -0.803623 | 3.19E-49 | -1.69E-46 |
MS.gene056408 | MS.gene28210 | 0.836015 | 1.20E-56 | -1.69E-46 |
MS.gene056408 | MS.gene28555 | 0.828424 | 9.06E-55 | -1.69E-46 |
MS.gene056408 | MS.gene28828 | 0.80521 | 1.49E-49 | -1.69E-46 |
MS.gene056408 | MS.gene29342 | 0.835497 | 1.62E-56 | -1.69E-46 |
MS.gene056408 | MS.gene29965 | 0.813518 | 2.46E-51 | -1.69E-46 |
MS.gene056408 | MS.gene30394 | 0.802528 | 5.38E-49 | -1.69E-46 |
MS.gene056408 | MS.gene30995 | 0.814496 | 1.50E-51 | -1.69E-46 |
MS.gene056408 | MS.gene31404 | 0.818437 | 1.96E-52 | -1.69E-46 |
MS.gene056408 | MS.gene32567 | 0.815073 | 1.11E-51 | -1.69E-46 |
MS.gene056408 | MS.gene32652 | -0.807691 | 4.47E-50 | -1.69E-46 |
MS.gene056408 | MS.gene33913 | 0.807773 | 4.29E-50 | -1.69E-46 |
MS.gene056408 | MS.gene34171 | -0.800907 | 1.16E-48 | -1.69E-46 |
MS.gene056408 | MS.gene34412 | 0.846786 | 1.74E-59 | -1.69E-46 |
MS.gene056408 | MS.gene36203 | -0.802137 | 6.47E-49 | -1.69E-46 |
MS.gene056408 | MS.gene37321 | 0.800884 | 1.17E-48 | -1.69E-46 |
MS.gene056408 | MS.gene37678 | 0.841364 | 4.97E-58 | -1.69E-46 |
MS.gene056408 | MS.gene38094 | 0.839179 | 1.85E-57 | -1.69E-46 |
MS.gene056408 | MS.gene38095 | 0.814842 | 1.25E-51 | -1.69E-46 |
MS.gene056408 | MS.gene38097 | 0.834123 | 3.60E-56 | -1.69E-46 |
MS.gene056408 | MS.gene38172 | 0.822191 | 2.70E-53 | -1.69E-46 |
MS.gene056408 | MS.gene38173 | 0.832588 | 8.68E-56 | -1.69E-46 |
MS.gene056408 | MS.gene38174 | 0.851612 | 7.92E-61 | -1.69E-46 |
MS.gene056408 | MS.gene38359 | 0.801967 | 7.01E-49 | -1.69E-46 |
MS.gene056408 | MS.gene41739 | 0.830049 | 3.65E-55 | -1.69E-46 |
MS.gene056408 | MS.gene42091 | 0.800278 | 1.55E-48 | -1.69E-46 |
MS.gene056408 | MS.gene42252 | 0.818853 | 1.58E-52 | -1.69E-46 |
MS.gene056408 | MS.gene42383 | 0.83647 | 9.19E-57 | -1.69E-46 |
MS.gene056408 | MS.gene44720 | 0.847467 | 1.14E-59 | -1.69E-46 |
MS.gene056408 | MS.gene44721 | 0.830554 | 2.75E-55 | -1.69E-46 |
MS.gene056408 | MS.gene44722 | 0.854502 | 1.18E-61 | -1.69E-46 |
MS.gene056408 | MS.gene44723 | 0.828391 | 9.23E-55 | -1.69E-46 |
MS.gene056408 | MS.gene45155 | 0.838815 | 2.30E-57 | -1.69E-46 |
MS.gene056408 | MS.gene45854 | 0.814689 | 1.36E-51 | -1.69E-46 |
MS.gene056408 | MS.gene46057 | 0.807805 | 4.22E-50 | -1.69E-46 |
MS.gene056408 | MS.gene46060 | 0.802468 | 5.53E-49 | -1.69E-46 |
MS.gene056408 | MS.gene47951 | -0.807474 | 4.97E-50 | -1.69E-46 |
MS.gene056408 | MS.gene48249 | 0.807499 | 4.91E-50 | -1.69E-46 |
MS.gene056408 | MS.gene49181 | 0.814957 | 1.18E-51 | -1.69E-46 |
MS.gene056408 | MS.gene49886 | 0.822688 | 2.07E-53 | -1.69E-46 |
MS.gene056408 | MS.gene49887 | 0.824776 | 6.72E-54 | -1.69E-46 |
MS.gene056408 | MS.gene50712 | -0.816765 | 4.67E-52 | -1.69E-46 |
MS.gene056408 | MS.gene51514 | 0.818966 | 1.49E-52 | -1.69E-46 |
MS.gene056408 | MS.gene52806 | 0.801091 | 1.06E-48 | -1.69E-46 |
MS.gene056408 | MS.gene54882 | 0.823373 | 1.43E-53 | -1.69E-46 |
MS.gene056408 | MS.gene55013 | 0.829055 | 6.38E-55 | -1.69E-46 |
MS.gene056408 | MS.gene58464 | 0.816371 | 5.72E-52 | -1.69E-46 |
MS.gene056408 | MS.gene59957 | 0.855707 | 5.27E-62 | -1.69E-46 |
MS.gene056408 | MS.gene59958 | 0.83055 | 2.76E-55 | -1.69E-46 |
MS.gene056408 | MS.gene60158 | 0.843142 | 1.68E-58 | -1.69E-46 |
MS.gene056408 | MS.gene60548 | 0.833696 | 4.60E-56 | -1.69E-46 |
MS.gene056408 | MS.gene60649 | 0.821438 | 4.04E-53 | -1.69E-46 |
MS.gene056408 | MS.gene60720 | 0.807869 | 4.09E-50 | -1.69E-46 |
MS.gene056408 | MS.gene60722 | 0.808371 | 3.20E-50 | -1.69E-46 |
MS.gene056408 | MS.gene62174 | 0.811409 | 7.10E-51 | -1.69E-46 |
MS.gene056408 | MS.gene62835 | 0.830314 | 3.15E-55 | -1.69E-46 |
MS.gene056408 | MS.gene63052 | 0.80614 | 9.50E-50 | -1.69E-46 |
MS.gene056408 | MS.gene63292 | 0.806522 | 7.90E-50 | -1.69E-46 |
MS.gene056408 | MS.gene63502 | 0.8095 | 1.83E-50 | -1.69E-46 |
MS.gene056408 | MS.gene64234 | 0.812846 | 3.45E-51 | -1.69E-46 |
MS.gene056408 | MS.gene64630 | 0.830265 | 3.24E-55 | -1.69E-46 |
MS.gene056408 | MS.gene67098 | 0.802147 | 6.44E-49 | -1.69E-46 |
MS.gene056408 | MS.gene67682 | 0.814715 | 1.34E-51 | -1.69E-46 |
MS.gene056408 | MS.gene67744 | 0.81426 | 1.69E-51 | -1.69E-46 |
MS.gene056408 | MS.gene68851 | 0.840365 | 9.08E-58 | -1.69E-46 |
MS.gene056408 | MS.gene68948 | 0.829091 | 6.25E-55 | -1.69E-46 |
MS.gene056408 | MS.gene69210 | 0.816046 | 6.77E-52 | -1.69E-46 |
MS.gene056408 | MS.gene69394 | 0.807108 | 5.94E-50 | -1.69E-46 |
MS.gene056408 | MS.gene69769 | 0.865047 | 7.84E-65 | -1.69E-46 |
MS.gene056408 | MS.gene70326 | -0.815601 | 8.50E-52 | -1.69E-46 |
MS.gene056408 | MS.gene70420 | 0.806253 | 9.00E-50 | -1.69E-46 |
MS.gene056408 | MS.gene70503 | 0.889999 | 1.46E-73 | -1.69E-46 |
MS.gene056408 | MS.gene70809 | -0.81003 | 1.41E-50 | -1.69E-46 |
MS.gene056408 | MS.gene71525 | 0.806728 | 7.14E-50 | -1.69E-46 |
MS.gene056408 | MS.gene71622 | 0.810916 | 9.09E-51 | -1.69E-46 |
MS.gene056408 | MS.gene72286 | 0.831413 | 1.69E-55 | -1.69E-46 |
MS.gene056408 | MS.gene76146 | 0.837455 | 5.15E-57 | -1.69E-46 |
MS.gene056408 | MS.gene77471 | 0.821791 | 3.35E-53 | -1.69E-46 |
MS.gene056408 | MS.gene78419 | 0.800023 | 1.75E-48 | -1.69E-46 |
MS.gene056408 | MS.gene78593 | 0.827147 | 1.84E-54 | -1.69E-46 |
MS.gene056408 | MS.gene78894 | 0.812453 | 4.21E-51 | -1.69E-46 |
MS.gene056408 | MS.gene79150 | 0.810283 | 1.25E-50 | -1.69E-46 |
MS.gene056408 | MS.gene80028 | 0.822567 | 2.21E-53 | -1.69E-46 |
MS.gene056408 | MS.gene80092 | 0.837478 | 5.08E-57 | -1.69E-46 |
MS.gene056408 | MS.gene80303 | -0.805543 | 1.27E-49 | -1.69E-46 |
MS.gene056408 | MS.gene80609 | 0.809876 | 1.52E-50 | -1.69E-46 |
MS.gene056408 | MS.gene80887 | 0.820285 | 7.44E-53 | -1.69E-46 |
MS.gene056408 | MS.gene81108 | 0.850664 | 1.47E-60 | -1.69E-46 |
MS.gene056408 | MS.gene82917 | -0.80084 | 1.19E-48 | -1.69E-46 |
MS.gene056408 | MS.gene83843 | 0.824974 | 6.03E-54 | -1.69E-46 |
MS.gene056408 | MS.gene85220 | 0.830767 | 2.44E-55 | -1.69E-46 |
MS.gene056408 | MS.gene86921 | 0.809861 | 1.53E-50 | -1.69E-46 |
MS.gene056408 | MS.gene87046 | 0.804029 | 2.63E-49 | -1.69E-46 |
MS.gene056408 | MS.gene87798 | 0.80654 | 7.83E-50 | -1.69E-46 |
MS.gene056408 | MS.gene88816 | 0.820169 | 7.91E-53 | -1.69E-46 |
MS.gene056408 | MS.gene88886 | 0.82476 | 6.78E-54 | -1.69E-46 |
MS.gene056408 | MS.gene88977 | 0.823771 | 1.16E-53 | -1.69E-46 |
MS.gene056408 | MS.gene89246 | 0.813264 | 2.79E-51 | -1.69E-46 |
MS.gene056408 | MS.gene89261 | 0.805839 | 1.10E-49 | -1.69E-46 |
MS.gene056408 | MS.gene90192 | 0.837853 | 4.07E-57 | -1.69E-46 |
MS.gene056408 | MS.gene91309 | 0.818108 | 2.33E-52 | -1.69E-46 |
MS.gene056408 | MS.gene91775 | 0.827675 | 1.37E-54 | -1.69E-46 |
MS.gene056408 | MS.gene91973 | 0.839188 | 1.84E-57 | -1.69E-46 |
MS.gene056408 | MS.gene91976 | 0.835554 | 1.57E-56 | -1.69E-46 |
MS.gene056408 | MS.gene91977 | 0.840102 | 1.06E-57 | -1.69E-46 |
MS.gene056408 | MS.gene92774 | 0.800544 | 1.37E-48 | -1.69E-46 |
MS.gene056408 | MS.gene96692 | 0.82366 | 1.23E-53 | -1.69E-46 |
MS.gene056408 | MS.gene97626 | 0.812855 | 3.44E-51 | -1.69E-46 |
MS.gene056408 | MS.gene98166 | -0.803842 | 2.87E-49 | -1.69E-46 |
MS.gene056408 | MS.gene99142 | 0.80038 | 1.48E-48 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene056408.t1 | MTR_4g068220 | 100.000 | 82 | 0 | 0 | 1 | 82 | 1 | 82 | 1.36e-57 | 171 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 18 sgRNAs with CRISPR-Local
Find 16 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCAAATTGTCATTGTGTTCT+TGG | 0.122953 | 4.1:+33803081 | None:intergenic |
TGGCTTCAACGTTTGCCTTC+TGG | 0.241911 | 4.1:-33803061 | MS.gene056408:CDS |
CCAAGAACACAATGACAATT+TGG | 0.298701 | 4.1:-33803081 | MS.gene056408:CDS |
AATCAATGACCAGGGCCTTT+AGG | 0.348519 | 4.1:+33803031 | None:intergenic |
TAGTAAGGTTGAAGCAAGTA+GGG | 0.403558 | 4.1:-33803173 | MS.gene056408:CDS |
TGACCAGGGCCTTTAGGACT+TGG | 0.419851 | 4.1:+33803037 | None:intergenic |
CACAATTGTTATGATCTGTT+TGG | 0.429281 | 4.1:-33803221 | MS.gene056408:CDS |
CAATTGTGATCAAATTCAAA+AGG | 0.442589 | 4.1:+33803236 | None:intergenic |
GTTCATAAGCTGATGTTTGA+AGG | 0.456602 | 4.1:+33803107 | None:intergenic |
CCTTCTGGACCAAGTCCTAA+AGG | 0.456913 | 4.1:-33803046 | MS.gene056408:CDS |
GAGTGAAAGTCAAAGTAGTA+AGG | 0.478900 | 4.1:-33803188 | MS.gene056408:CDS |
TCAAACATCAGCTTATGAAC+AGG | 0.483154 | 4.1:-33803104 | MS.gene056408:CDS |
AATTGTGATCAAATTCAAAA+GGG | 0.519874 | 4.1:+33803237 | None:intergenic |
GGACCAAGTCCTAAAGGCCC+TGG | 0.533081 | 4.1:-33803040 | MS.gene056408:CDS |
GTAGTAAGGTTGAAGCAAGT+AGG | 0.549665 | 4.1:-33803174 | MS.gene056408:CDS |
CCTTTAGGACTTGGTCCAGA+AGG | 0.562731 | 4.1:+33803046 | None:intergenic |
TGGATATGGAATCAATGACC+AGG | 0.587866 | 4.1:+33803022 | None:intergenic |
GGATATGGAATCAATGACCA+GGG | 0.650404 | 4.1:+33803023 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTGTGATCAAATTCAAAA+GGG | + | chr4.1:33803058-33803077 | None:intergenic | 20.0% |
! | CAATTGTGATCAAATTCAAA+AGG | + | chr4.1:33803059-33803078 | None:intergenic | 25.0% |
CACAATTGTTATGATCTGTT+TGG | - | chr4.1:33803071-33803090 | MS.gene056408:CDS | 30.0% | |
CCAAATTGTCATTGTGTTCT+TGG | + | chr4.1:33803214-33803233 | None:intergenic | 35.0% | |
CCAAGAACACAATGACAATT+TGG | - | chr4.1:33803211-33803230 | MS.gene056408:CDS | 35.0% | |
GAGTGAAAGTCAAAGTAGTA+AGG | - | chr4.1:33803104-33803123 | MS.gene056408:CDS | 35.0% | |
GTTCATAAGCTGATGTTTGA+AGG | + | chr4.1:33803188-33803207 | None:intergenic | 35.0% | |
TAGTAAGGTTGAAGCAAGTA+GGG | - | chr4.1:33803119-33803138 | MS.gene056408:CDS | 35.0% | |
TCAAACATCAGCTTATGAAC+AGG | - | chr4.1:33803188-33803207 | MS.gene056408:CDS | 35.0% | |
! | TTGAAGCAAGTAGGGTTTTA+AGG | - | chr4.1:33803127-33803146 | MS.gene056408:CDS | 35.0% |
GTAGTAAGGTTGAAGCAAGT+AGG | - | chr4.1:33803118-33803137 | MS.gene056408:CDS | 40.0% | |
CCTTCTGGACCAAGTCCTAA+AGG | - | chr4.1:33803246-33803265 | MS.gene056408:CDS | 50.0% | |
TGGCTTCAACGTTTGCCTTC+TGG | - | chr4.1:33803231-33803250 | MS.gene056408:CDS | 50.0% | |
!! | CCTTTAGGACTTGGTCCAGA+AGG | + | chr4.1:33803249-33803268 | None:intergenic | 50.0% |
!! | TGACCAGGGCCTTTAGGACT+TGG | + | chr4.1:33803258-33803277 | None:intergenic | 55.0% |
GGACCAAGTCCTAAAGGCCC+TGG | - | chr4.1:33803252-33803271 | MS.gene056408:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 33803033 | 33803281 | 33803033 | ID=MS.gene056408 |
chr4.1 | mRNA | 33803033 | 33803281 | 33803033 | ID=MS.gene056408.t1;Parent=MS.gene056408 |
chr4.1 | exon | 33803033 | 33803281 | 33803033 | ID=MS.gene056408.t1.exon1;Parent=MS.gene056408.t1 |
chr4.1 | CDS | 33803033 | 33803281 | 33803033 | ID=cds.MS.gene056408.t1;Parent=MS.gene056408.t1 |
Gene Sequence |
Protein sequence |