Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066434.t1 | RHN39888.1 | 98.6 | 212 | 3 | 0 | 1 | 212 | 6 | 217 | 1.30E-110 | 409.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066434.t1 | Q8LF97 | 82.2 | 208 | 36 | 1 | 1 | 208 | 6 | 212 | 7.2e-94 | 344.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066434.t1 | G7LBR1 | 98.6 | 212 | 3 | 0 | 1 | 212 | 6 | 217 | 9.3e-111 | 409.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene056793 | MS.gene066434 | 0.956498 | 2.56E-114 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066434.t1 | MTR_8g030670 | 98.585 | 212 | 3 | 0 | 1 | 212 | 6 | 217 | 3.74e-153 | 429 |
MS.gene066434.t1 | MTR_7g077810 | 85.646 | 209 | 30 | 0 | 1 | 209 | 6 | 214 | 4.97e-136 | 385 |
MS.gene066434.t1 | MTR_6g053620 | 71.770 | 209 | 58 | 1 | 1 | 209 | 6 | 213 | 5.96e-110 | 319 |
MS.gene066434.t1 | MTR_6g053620 | 71.770 | 209 | 58 | 1 | 1 | 209 | 6 | 213 | 1.49e-109 | 318 |
MS.gene066434.t1 | MTR_2g100825 | 78.818 | 203 | 37 | 4 | 7 | 207 | 5 | 203 | 1.64e-107 | 311 |
MS.gene066434.t1 | MTR_2g100830 | 69.903 | 206 | 57 | 3 | 7 | 210 | 5 | 207 | 1.23e-98 | 289 |
MS.gene066434.t1 | MTR_8g007185 | 71.770 | 209 | 56 | 3 | 5 | 210 | 3 | 211 | 7.87e-95 | 278 |
MS.gene066434.t1 | MTR_8g007205 | 71.292 | 209 | 57 | 3 | 5 | 210 | 3 | 211 | 3.83e-94 | 277 |
MS.gene066434.t1 | MTR_8g007195 | 62.264 | 212 | 73 | 3 | 3 | 210 | 1 | 209 | 3.20e-82 | 248 |
MS.gene066434.t1 | MTR_7g036780 | 60.952 | 210 | 68 | 5 | 5 | 210 | 3 | 202 | 5.20e-77 | 231 |
MS.gene066434.t1 | MTR_8g007220 | 57.073 | 205 | 86 | 2 | 7 | 210 | 5 | 208 | 9.35e-75 | 228 |
MS.gene066434.t1 | MTR_3g061700 | 56.757 | 148 | 33 | 2 | 63 | 209 | 1 | 118 | 8.99e-46 | 150 |
MS.gene066434.t1 | MTR_3g110048 | 32.381 | 105 | 64 | 1 | 57 | 154 | 47 | 151 | 3.50e-15 | 70.5 |
MS.gene066434.t1 | MTR_4g032400 | 30.216 | 139 | 86 | 4 | 13 | 145 | 14 | 147 | 5.59e-15 | 70.1 |
MS.gene066434.t1 | MTR_7g094120 | 33.333 | 99 | 59 | 1 | 57 | 148 | 48 | 146 | 6.88e-15 | 69.7 |
MS.gene066434.t1 | MTR_7g094150 | 37.234 | 94 | 52 | 2 | 58 | 145 | 48 | 140 | 1.04e-14 | 69.3 |
MS.gene066434.t1 | MTR_4g033460 | 29.224 | 219 | 127 | 7 | 13 | 208 | 12 | 225 | 1.88e-14 | 70.5 |
MS.gene066434.t1 | MTR_4g032460 | 32.117 | 137 | 84 | 4 | 11 | 145 | 5 | 134 | 2.67e-14 | 67.8 |
MS.gene066434.t1 | MTR_7g094170 | 37.234 | 94 | 52 | 2 | 58 | 145 | 48 | 140 | 4.55e-14 | 67.4 |
MS.gene066434.t1 | MTR_7g021400 | 34.409 | 93 | 56 | 1 | 58 | 145 | 48 | 140 | 4.74e-14 | 67.4 |
MS.gene066434.t1 | MTR_8g468480 | 36.000 | 100 | 57 | 2 | 58 | 151 | 48 | 146 | 5.48e-14 | 67.4 |
MS.gene066434.t1 | MTR_4g032510 | 39.785 | 93 | 54 | 2 | 58 | 149 | 50 | 141 | 6.14e-14 | 67.0 |
MS.gene066434.t1 | MTR_1g099870 | 36.559 | 93 | 52 | 2 | 66 | 151 | 1 | 93 | 9.87e-14 | 65.1 |
MS.gene066434.t1 | MTR_4g032450 | 29.577 | 142 | 89 | 4 | 13 | 148 | 26 | 162 | 1.03e-13 | 67.0 |
MS.gene066434.t1 | MTR_5g022710 | 29.710 | 138 | 87 | 3 | 13 | 145 | 7 | 139 | 1.06e-13 | 66.6 |
MS.gene066434.t1 | MTR_5g022730 | 28.986 | 138 | 88 | 3 | 13 | 145 | 7 | 139 | 1.23e-13 | 66.2 |
MS.gene066434.t1 | MTR_4g033455 | 30.070 | 143 | 88 | 3 | 13 | 149 | 12 | 148 | 1.71e-13 | 65.9 |
MS.gene066434.t1 | MTR_8g056060 | 30.000 | 150 | 94 | 3 | 13 | 156 | 8 | 152 | 2.58e-13 | 65.5 |
MS.gene066434.t1 | MTR_4g032500 | 37.500 | 96 | 59 | 1 | 59 | 154 | 51 | 145 | 1.19e-12 | 63.5 |
MS.gene066434.t1 | MTR_7g021380 | 33.333 | 96 | 59 | 1 | 55 | 145 | 45 | 140 | 1.99e-12 | 63.2 |
MS.gene066434.t1 | MTR_8g089730 | 32.584 | 89 | 48 | 1 | 57 | 145 | 14 | 90 | 2.43e-12 | 61.6 |
MS.gene066434.t1 | MTR_5g085030 | 29.897 | 97 | 63 | 1 | 57 | 148 | 47 | 143 | 2.58e-11 | 60.1 |
MS.gene066434.t1 | MTR_4g021390 | 29.091 | 110 | 72 | 2 | 36 | 140 | 26 | 134 | 3.22e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene066434.t1 | AT3G61415 | 82.212 | 208 | 36 | 1 | 1 | 208 | 6 | 212 | 2.61e-126 | 360 |
MS.gene066434.t1 | AT3G61415 | 82.212 | 208 | 36 | 1 | 1 | 208 | 6 | 212 | 4.19e-126 | 360 |
MS.gene066434.t1 | AT2G45950 | 81.731 | 208 | 37 | 1 | 1 | 208 | 6 | 212 | 1.84e-125 | 358 |
MS.gene066434.t1 | AT2G45950 | 81.731 | 208 | 37 | 1 | 1 | 208 | 6 | 212 | 1.84e-125 | 358 |
MS.gene066434.t1 | AT2G45950 | 81.731 | 208 | 37 | 1 | 1 | 208 | 6 | 212 | 1.84e-125 | 358 |
MS.gene066434.t1 | AT2G45950 | 81.731 | 208 | 37 | 1 | 1 | 208 | 6 | 212 | 7.20e-125 | 357 |
MS.gene066434.t1 | AT2G45950 | 81.731 | 208 | 37 | 1 | 1 | 208 | 6 | 212 | 7.20e-125 | 357 |
MS.gene066434.t1 | AT3G21850 | 33.103 | 145 | 90 | 4 | 8 | 149 | 1 | 141 | 6.33e-18 | 77.8 |
MS.gene066434.t1 | AT1G75950 | 30.872 | 149 | 87 | 3 | 8 | 145 | 1 | 144 | 1.16e-14 | 69.3 |
MS.gene066434.t1 | AT2G03170 | 37.234 | 94 | 57 | 2 | 57 | 149 | 45 | 137 | 1.48e-14 | 68.6 |
MS.gene066434.t1 | AT4G34210 | 36.170 | 94 | 57 | 1 | 59 | 149 | 47 | 140 | 9.73e-14 | 66.6 |
MS.gene066434.t1 | AT1G20140 | 29.747 | 158 | 93 | 5 | 10 | 155 | 5 | 156 | 2.46e-13 | 65.9 |
MS.gene066434.t1 | AT2G25700 | 29.814 | 161 | 89 | 6 | 10 | 155 | 5 | 156 | 3.82e-13 | 65.1 |
MS.gene066434.t1 | AT5G42190 | 31.250 | 112 | 55 | 2 | 55 | 145 | 45 | 155 | 5.82e-13 | 64.7 |
MS.gene066434.t1 | AT3G21830 | 27.083 | 144 | 97 | 2 | 8 | 148 | 1 | 139 | 8.35e-13 | 63.9 |
MS.gene066434.t1 | AT4G34470 | 35.106 | 94 | 58 | 1 | 59 | 149 | 47 | 140 | 1.06e-12 | 63.9 |
MS.gene066434.t1 | AT3G21860 | 28.276 | 145 | 96 | 4 | 8 | 149 | 1 | 140 | 4.52e-11 | 59.3 |
MS.gene066434.t1 | AT3G60020 | 28.082 | 146 | 93 | 5 | 9 | 148 | 1 | 140 | 4.70e-11 | 59.3 |
Find 40 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTAAGCTCTTTCCTCTTCT+TGG | 0.128563 | 8.1:+72212885 | None:intergenic |
CAATCTCTTGTTCAACTTGT+TGG | 0.233800 | 8.1:+72213516 | None:intergenic |
AATATTTCTTGACATATAAA+TGG | 0.241293 | 8.1:+72213482 | None:intergenic |
TTCCTTCTCTAGGTGGTAAA+TGG | 0.319299 | 8.1:-72210950 | MS.gene066434:intron |
AAGACATACTGAACAATTCT+TGG | 0.364803 | 8.1:+72213439 | None:intergenic |
TGTCAAGAAATATTACAAAA+AGG | 0.366988 | 8.1:-72213473 | MS.gene066434:CDS |
AGAATTAAGCTCAACATTGC+AGG | 0.377228 | 8.1:+72213401 | None:intergenic |
TAAAGAGCGTGAGAGGATAA+AGG | 0.430215 | 8.1:-72212866 | MS.gene066434:intron |
GAAGTTTGAAGCCACACATA+AGG | 0.447376 | 8.1:+72213551 | None:intergenic |
CAGCCTTCAGTTAAAGCCAT+TGG | 0.449173 | 8.1:-72213159 | MS.gene066434:CDS |
TGTCGATTTCATCAAGTACT+AGG | 0.451108 | 8.1:-72213371 | MS.gene066434:CDS |
TTCCATTAATAAAAGACAAA+AGG | 0.453283 | 8.1:+72212056 | None:intergenic |
GACACCTCTGTAAGATCATC+AGG | 0.476044 | 8.1:+72213059 | None:intergenic |
ATCATCAGTTATGTTTCTCA+AGG | 0.487275 | 8.1:+72212939 | None:intergenic |
GCTCTTGCTCGAATAATTGA+AGG | 0.493143 | 8.1:-72213119 | MS.gene066434:CDS |
TATAATCCAGGAAGAGAAGC+TGG | 0.494548 | 8.1:-72212965 | MS.gene066434:intron |
TATTCGAGCAAGAGCACGAC+TGG | 0.501432 | 8.1:+72213127 | None:intergenic |
AACTTGTTGGATTGATTCAT+CGG | 0.503720 | 8.1:+72213529 | None:intergenic |
TAACTGATGATCCAAGGATA+AGG | 0.514531 | 8.1:-72212927 | MS.gene066434:CDS |
TTTATTAATGGAAATGATGG+AGG | 0.529025 | 8.1:-72212046 | MS.gene066434:intron |
CGGTTCAAAAGCCTTATCCT+TGG | 0.529113 | 8.1:+72212916 | None:intergenic |
TTTCATGTTTCAGAATGTTG+AGG | 0.538493 | 8.1:-72212116 | MS.gene066434:intron |
AAGAGCTTAAAGAGCGTGAG+AGG | 0.550859 | 8.1:-72212873 | MS.gene066434:CDS |
CTTATGATGAGAAATTCGTT+AGG | 0.551402 | 8.1:-72213223 | MS.gene066434:CDS |
TCCTCTTCTTGGCATACAAG+CGG | 0.552561 | 8.1:+72212896 | None:intergenic |
CAACCAATGGCTTTAACTGA+AGG | 0.566317 | 8.1:+72213156 | None:intergenic |
ATTGCAGGACTGACTTGTTG+AGG | 0.581903 | 8.1:+72213416 | None:intergenic |
AATATATCACGAATCTCCTC+CGG | 0.585815 | 8.1:+72213089 | None:intergenic |
AGTACTAGGCCGCTCAAACA+AGG | 0.587931 | 8.1:-72213357 | MS.gene066434:intron |
ATTGAAGAACCTTGTTTGAG+CGG | 0.591670 | 8.1:+72213348 | None:intergenic |
ACCGCTTGTATGCCAAGAAG+AGG | 0.592240 | 8.1:-72212897 | MS.gene066434:CDS |
AATAATTGAAGGGAGATCAC+CGG | 0.593273 | 8.1:-72213108 | MS.gene066434:CDS |
TCATCAGTTATGTTTCTCAA+GGG | 0.605396 | 8.1:+72212940 | None:intergenic |
GAAACATAACTGATGATCCA+AGG | 0.605496 | 8.1:-72212933 | MS.gene066434:CDS |
CTCTTGCTCGAATAATTGAA+GGG | 0.613445 | 8.1:-72213118 | MS.gene066434:CDS |
TTTGCCTGATGATCTTACAG+AGG | 0.655792 | 8.1:-72213063 | MS.gene066434:intron |
CATGGCAGTTATTAAACCCG+AGG | 0.683521 | 8.1:-72214476 | MS.gene066434:intron |
AGATGATGAAGCCTTATGTG+TGG | 0.697842 | 8.1:-72213562 | MS.gene066434:CDS |
CGACTGGTGAGATCAACCAA+TGG | 0.697991 | 8.1:+72213143 | None:intergenic |
AATTGAAGGGAGATCACCGG+AGG | 0.707838 | 8.1:-72213105 | MS.gene066434:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATCCAAAAAAATATAAT+CGG | + | chr8.1:72212410-72212429 | None:intergenic | 10.0% |
!! | TAAGAAAATTATTTATAAAC+CGG | - | chr8.1:72213976-72213995 | MS.gene066434:intron | 10.0% |
!! | TTAAACAAAATTTAACAATT+GGG | + | chr8.1:72211029-72211048 | None:intergenic | 10.0% |
!!! | CAAAACTTTTTTATAATTTA+GGG | + | chr8.1:72213272-72213291 | None:intergenic | 10.0% |
!!! | TAAGTTTAAAAGTATAAAAA+TGG | + | chr8.1:72211761-72211780 | None:intergenic | 10.0% |
!!! | TCAAAACTTTTTTATAATTT+AGG | + | chr8.1:72213273-72213292 | None:intergenic | 10.0% |
!! | AATATTTCTTGACATATAAA+TGG | + | chr8.1:72211940-72211959 | None:intergenic | 15.0% |
!! | ATAAATAGTTAACTTTAATC+CGG | + | chr8.1:72213998-72214017 | None:intergenic | 15.0% |
!! | CTTAAACAAAATTTAACAAT+TGG | + | chr8.1:72211030-72211049 | None:intergenic | 15.0% |
!!! | AAAATATTTGAGATTCTTTT+AGG | - | chr8.1:72214150-72214169 | MS.gene066434:intron | 15.0% |
!!! | AAATATTTGAGATTCTTTTA+GGG | - | chr8.1:72214151-72214170 | MS.gene066434:intron | 15.0% |
!!! | AAGAAATTTGTATGATTTTT+GGG | - | chr8.1:72214098-72214117 | MS.gene066434:intron | 15.0% |
!!! | ACTGGAATAATTTTTATATA+AGG | - | chr8.1:72213821-72213840 | MS.gene066434:intron | 15.0% |
!!! | CAATTGTTAAATTTTGTTTA+AGG | - | chr8.1:72211028-72211047 | MS.gene066434:intron | 15.0% |
!!! | GAAATTGAATTTTAGAAATT+AGG | - | chr8.1:72212951-72212970 | MS.gene066434:CDS | 15.0% |
!!! | TAAGAAATTTGTATGATTTT+TGG | - | chr8.1:72214097-72214116 | MS.gene066434:intron | 15.0% |
!! | AAATCACCTTAATCTATTTA+AGG | - | chr8.1:72211431-72211450 | MS.gene066434:intron | 20.0% |
!! | AAATGTTTGTCTTATAGAAA+AGG | + | chr8.1:72213727-72213746 | None:intergenic | 20.0% |
!! | AATGTTTGTCTTATAGAAAA+GGG | + | chr8.1:72213726-72213745 | None:intergenic | 20.0% |
!! | AGAAAGTAAAATCTAAAAGA+GGG | - | chr8.1:72212974-72212993 | MS.gene066434:intron | 20.0% |
!! | ATATAAAAATTATTCCAGTC+AGG | + | chr8.1:72213820-72213839 | None:intergenic | 20.0% |
!! | ATATCTAATGTTTACATAGT+TGG | + | chr8.1:72211581-72211600 | None:intergenic | 20.0% |
!! | GATGTACAAATAATTTCAAT+AGG | - | chr8.1:72211156-72211175 | MS.gene066434:intron | 20.0% |
!! | TAATAAAACTGACACTATAT+TGG | - | chr8.1:72211817-72211836 | MS.gene066434:intron | 20.0% |
!! | TATAAAAATTATTCCAGTCA+GGG | + | chr8.1:72213819-72213838 | None:intergenic | 20.0% |
!! | TGTCAAGAAATATTACAAAA+AGG | - | chr8.1:72211946-72211965 | MS.gene066434:intron | 20.0% |
!! | TGTTTATAAGTAAAAGACAA+AGG | + | chr8.1:72211084-72211103 | None:intergenic | 20.0% |
!! | TTCCATTAATAAAAGACAAA+AGG | + | chr8.1:72213366-72213385 | None:intergenic | 20.0% |
!! | TTGTTTCACGTAATATTTAA+TGG | - | chr8.1:72211125-72211144 | MS.gene066434:intron | 20.0% |
!!! | AAAATCTGTGATTTTTGAAA+CGG | + | chr8.1:72211270-72211289 | None:intergenic | 20.0% |
!!! | TAATGTTCGTCTTTTAAAAA+GGG | + | chr8.1:72213532-72213551 | None:intergenic | 20.0% |
!!! | TACAGTTAATTTTTTAGTGA+TGG | + | chr8.1:72214438-72214457 | None:intergenic | 20.0% |
!!! | TCTTTTATTAATGGAAATGA+TGG | - | chr8.1:72213370-72213389 | MS.gene066434:CDS | 20.0% |
! | AACTTAGATATAAAAAACCC+TGG | - | chr8.1:72212908-72212927 | MS.gene066434:CDS | 25.0% |
! | AATTTGCCACAACAATTTAT+CGG | + | chr8.1:72213905-72213924 | None:intergenic | 25.0% |
! | ACCATACAACAATAAAAAGA+AGG | - | chr8.1:72212839-72212858 | MS.gene066434:intron | 25.0% |
! | ATCTAAGTTTCTGATATAGA+AGG | + | chr8.1:72212897-72212916 | None:intergenic | 25.0% |
! | ATGTTTGTCTTATAGAAAAG+GGG | + | chr8.1:72213725-72213744 | None:intergenic | 25.0% |
! | CAAATGATGTGACAATATAA+GGG | + | chr8.1:72214074-72214093 | None:intergenic | 25.0% |
! | CTTATATTGTCACATCATTT+GGG | - | chr8.1:72214073-72214092 | MS.gene066434:intron | 25.0% |
! | GAAATATTACAAAAAGGCAA+TGG | - | chr8.1:72211952-72211971 | MS.gene066434:intron | 25.0% |
! | GAGAAAGTAAAATCTAAAAG+AGG | - | chr8.1:72212973-72212992 | MS.gene066434:intron | 25.0% |
! | GATCTGTCAATTAAATAACA+CGG | - | chr8.1:72211507-72211526 | MS.gene066434:intron | 25.0% |
! | GATGTCATTGTAAAATTAAG+AGG | - | chr8.1:72213601-72213620 | MS.gene066434:intron | 25.0% |
! | GTAATATTTAATGGCATCAT+TGG | - | chr8.1:72211134-72211153 | MS.gene066434:intron | 25.0% |
! | TTATAAGAATGTGTGAGAAA+TGG | + | chr8.1:72212439-72212458 | None:intergenic | 25.0% |
! | TTATACACTGCTAAATCATT+TGG | - | chr8.1:72214375-72214394 | MS.gene066434:intron | 25.0% |
! | TTATTACCGATAAATTGTTG+TGG | - | chr8.1:72213896-72213915 | MS.gene066434:intron | 25.0% |
! | TTCACAATAAAAATCTTCCA+GGG | + | chr8.1:72212928-72212947 | None:intergenic | 25.0% |
! | TTCTATTTAATGTTACTCCT+TGG | - | chr8.1:72213496-72213515 | MS.gene066434:CDS | 25.0% |
! | TTTATTAATGGAAATGATGG+AGG | - | chr8.1:72213373-72213392 | MS.gene066434:CDS | 25.0% |
! | TTTCACAATAAAAATCTTCC+AGG | + | chr8.1:72212929-72212948 | None:intergenic | 25.0% |
!! | AAATAGAAAGTGCACAAATT+AGG | + | chr8.1:72213484-72213503 | None:intergenic | 25.0% |
!! | ACCTTCTTTTTATTGTTGTA+TGG | + | chr8.1:72212843-72212862 | None:intergenic | 25.0% |
!! | ATTGGGATTCAATTTTGTAT+GGG | + | chr8.1:72211245-72211264 | None:intergenic | 25.0% |
!! | GACCTTTTGTCTTTTATTAA+TGG | - | chr8.1:72213361-72213380 | MS.gene066434:CDS | 25.0% |
!! | GATACAAGTTTTTATTATCG+TGG | - | chr8.1:72214019-72214038 | MS.gene066434:intron | 25.0% |
!! | GATTTTCTTTTGTATAGGAA+CGG | - | chr8.1:72212169-72212188 | MS.gene066434:intron | 25.0% |
!! | TCTGATCTAATTGATGTTTT+CGG | - | chr8.1:72213078-72213097 | MS.gene066434:CDS | 25.0% |
!!! | AAAATCACAGATTTTGAAAC+TGG | - | chr8.1:72211275-72211294 | MS.gene066434:intron | 25.0% |
!!! | AAATCTGTGATTTTTGAAAC+GGG | + | chr8.1:72211269-72211288 | None:intergenic | 25.0% |
!!! | ACTTCTCTTTGTTTTACTTT+TGG | - | chr8.1:72211794-72211813 | MS.gene066434:intron | 25.0% |
!!! | CTTTTAAAAAGGGTTTCTTA+TGG | + | chr8.1:72213522-72213541 | None:intergenic | 25.0% |
!!! | GTAATGTTCGTCTTTTAAAA+AGG | + | chr8.1:72213533-72213552 | None:intergenic | 25.0% |
!!! | GTATGCCGATTATATTTTTT+TGG | - | chr8.1:72212402-72212421 | MS.gene066434:intron | 25.0% |
!!! | GTATGGTTTTTTTTGTTGTT+CGG | + | chr8.1:72212826-72212845 | None:intergenic | 25.0% |
!!! | TACAATGACATCATTTTTAG+CGG | + | chr8.1:72213593-72213612 | None:intergenic | 25.0% |
!!! | TTTGTTTAAGGTGTACTTTT+TGG | - | chr8.1:72211040-72211059 | MS.gene066434:intron | 25.0% |
AAACAGCCATAAATGCATTA+TGG | + | chr8.1:72211198-72211217 | None:intergenic | 30.0% | |
AAAGAAGGTGAGTGAATATA+AGG | - | chr8.1:72212854-72212873 | MS.gene066434:intron | 30.0% | |
AAAGAGAAGTCTTCAATGAT+AGG | + | chr8.1:72211784-72211803 | None:intergenic | 30.0% | |
AAATTGTTGTGGCAAATTTG+TGG | - | chr8.1:72213907-72213926 | MS.gene066434:intron | 30.0% | |
AACTAGAGCTTGAAATTTGA+AGG | + | chr8.1:72213134-72213153 | None:intergenic | 30.0% | |
AAGACATACTGAACAATTCT+TGG | + | chr8.1:72211983-72212002 | None:intergenic | 30.0% | |
AATTGTTGTGGCAAATTTGT+GGG | - | chr8.1:72213908-72213927 | MS.gene066434:intron | 30.0% | |
ACAGAAGAATTCTTCTTTGA+AGG | - | chr8.1:72214304-72214323 | MS.gene066434:intron | 30.0% | |
ACTAGAGCTTGAAATTTGAA+GGG | + | chr8.1:72213133-72213152 | None:intergenic | 30.0% | |
ACTTTCTATCTGATGTTATG+AGG | - | chr8.1:72213551-72213570 | MS.gene066434:CDS | 30.0% | |
AGAATAAAAAGAAGAACCGA+AGG | - | chr8.1:72214270-72214289 | MS.gene066434:intron | 30.0% | |
ATATCACAGAATATCTCACT+CGG | - | chr8.1:72212145-72212164 | MS.gene066434:intron | 30.0% | |
ATCATCAGTTATGTTTCTCA+AGG | + | chr8.1:72212483-72212502 | None:intergenic | 30.0% | |
ATGCATTTATGGCTGTTTAA+TGG | - | chr8.1:72211200-72211219 | MS.gene066434:intron | 30.0% | |
ATTTAAGGATGGTGATTCTA+GGG | - | chr8.1:72211446-72211465 | MS.gene066434:intron | 30.0% | |
ATTTATCGGTAATAACCCTT+CGG | + | chr8.1:72213891-72213910 | None:intergenic | 30.0% | |
CACCATCCTTAAATAGATTA+AGG | + | chr8.1:72211440-72211459 | None:intergenic | 30.0% | |
CACCTTAATCTATTTAAGGA+TGG | - | chr8.1:72211435-72211454 | MS.gene066434:intron | 30.0% | |
CATAAATGCATTATGGTTCA+CGG | + | chr8.1:72211191-72211210 | None:intergenic | 30.0% | |
CCAAATGATGTGACAATATA+AGG | + | chr8.1:72214075-72214094 | None:intergenic | 30.0% | |
CCTTATATTGTCACATCATT+TGG | - | chr8.1:72214072-72214091 | MS.gene066434:intron | 30.0% | |
CTTATGATGAGAAATTCGTT+AGG | - | chr8.1:72212196-72212215 | MS.gene066434:intron | 30.0% | |
GATTGTAGACAAAATGAGAT+AGG | - | chr8.1:72213052-72213071 | MS.gene066434:intron | 30.0% | |
TACAGAAAGATATCATACCT+CGG | + | chr8.1:72210963-72210982 | None:intergenic | 30.0% | |
TAGCTTGACAATGTTCATTT+AGG | - | chr8.1:72212776-72212795 | MS.gene066434:intron | 30.0% | |
TATTTAAGGATGGTGATTCT+AGG | - | chr8.1:72211445-72211464 | MS.gene066434:intron | 30.0% | |
TCAAAGAAGAATTCTTCTGT+TGG | + | chr8.1:72214304-72214323 | None:intergenic | 30.0% | |
TCATCAGTTATGTTTCTCAA+GGG | + | chr8.1:72212482-72212501 | None:intergenic | 30.0% | |
TGAATGAACATAGAGTCTAT+TGG | - | chr8.1:72214412-72214431 | MS.gene066434:intron | 30.0% | |
TGTGATATTTGTTCAGACTA+GGG | + | chr8.1:72212133-72212152 | None:intergenic | 30.0% | |
TGTTTGTCTTATAGAAAAGG+GGG | + | chr8.1:72213724-72213743 | None:intergenic | 30.0% | |
TTTAATTGACAGATCATGCA+TGG | + | chr8.1:72211502-72211521 | None:intergenic | 30.0% | |
TTTACAACAACCTTCTTATG+TGG | + | chr8.1:72214341-72214360 | None:intergenic | 30.0% | |
TTTCATGTTTCAGAATGTTG+AGG | - | chr8.1:72213303-72213322 | MS.gene066434:intron | 30.0% | |
TTTCTCTATGACTGTTGTAA+TGG | - | chr8.1:72211703-72211722 | MS.gene066434:intron | 30.0% | |
! | GATTGGGATTCAATTTTGTA+TGG | + | chr8.1:72211246-72211265 | None:intergenic | 30.0% |
! | TCATTTAGGACATACTTTGT+TGG | - | chr8.1:72212790-72212809 | MS.gene066434:intron | 30.0% |
! | TCGGTGATTTTCTTTTGTAT+AGG | - | chr8.1:72212164-72212183 | MS.gene066434:intron | 30.0% |
! | TCGGTTCTTCTTTTTATTCT+TGG | + | chr8.1:72214270-72214289 | None:intergenic | 30.0% |
! | TCTCAATTTTATGACAGACT+AGG | - | chr8.1:72213663-72213682 | MS.gene066434:intron | 30.0% |
! | TTGGGATTCAATTTTGTATG+GGG | + | chr8.1:72211244-72211263 | None:intergenic | 30.0% |
!! | AACTTGTTGGATTGATTCAT+CGG | + | chr8.1:72211893-72211912 | None:intergenic | 30.0% |
!! | CAACATTCTGAAACATGAAA+GGG | + | chr8.1:72213303-72213322 | None:intergenic | 30.0% |
!! | GTTACTGTGTTTTGCTTTTA+AGG | - | chr8.1:72211392-72211411 | MS.gene066434:intron | 30.0% |
!! | TCAACATTCTGAAACATGAA+AGG | + | chr8.1:72213304-72213323 | None:intergenic | 30.0% |
!!! | AATCTGTGATTTTTGAAACG+GGG | + | chr8.1:72211268-72211287 | None:intergenic | 30.0% |
!!! | ACAATGACATCATTTTTAGC+GGG | + | chr8.1:72213592-72213611 | None:intergenic | 30.0% |
AATAATTGAAGGGAGATCAC+CGG | - | chr8.1:72212311-72212330 | MS.gene066434:intron | 35.0% | |
AATATATCACGAATCTCCTC+CGG | + | chr8.1:72212333-72212352 | None:intergenic | 35.0% | |
ACAGAAAGATATCATACCTC+GGG | + | chr8.1:72210962-72210981 | None:intergenic | 35.0% | |
AGAATTAAGCTCAACATTGC+AGG | + | chr8.1:72212021-72212040 | None:intergenic | 35.0% | |
AGCACATCATTAACGAACTT+TGG | + | chr8.1:72214047-72214066 | None:intergenic | 35.0% | |
AGCTGAAACTGTTAACATTG+CGG | - | chr8.1:72213018-72213037 | MS.gene066434:intron | 35.0% | |
ATCATCTGTACCACATAAGA+AGG | - | chr8.1:72214328-72214347 | MS.gene066434:intron | 35.0% | |
ATCTAAAAGAGGGCAACTAA+CGG | - | chr8.1:72212984-72213003 | MS.gene066434:intron | 35.0% | |
CAATCTCTTGTTCAACTTGT+TGG | + | chr8.1:72211906-72211925 | None:intergenic | 35.0% | |
CGTGAACCATAATGCATTTA+TGG | - | chr8.1:72211189-72211208 | MS.gene066434:intron | 35.0% | |
CTAGAGCTTGAAATTTGAAG+GGG | + | chr8.1:72213132-72213151 | None:intergenic | 35.0% | |
CTCACACATTCTTATAATCC+AGG | - | chr8.1:72212442-72212461 | MS.gene066434:intron | 35.0% | |
CTCTTGCTCGAATAATTGAA+GGG | - | chr8.1:72212301-72212320 | MS.gene066434:intron | 35.0% | |
CTGTGATATTTGTTCAGACT+AGG | + | chr8.1:72212134-72212153 | None:intergenic | 35.0% | |
GAAACATAACTGATGATCCA+AGG | - | chr8.1:72212486-72212505 | MS.gene066434:intron | 35.0% | |
GTCTGTCATAAAATTGAGAC+TGG | + | chr8.1:72213662-72213681 | None:intergenic | 35.0% | |
GTGAAGATCAATGTTGTCAA+TGG | - | chr8.1:72212676-72212695 | MS.gene066434:intron | 35.0% | |
TAACTGATGATCCAAGGATA+AGG | - | chr8.1:72212492-72212511 | MS.gene066434:intron | 35.0% | |
TAGAGCTTGAAATTTGAAGG+GGG | + | chr8.1:72213131-72213150 | None:intergenic | 35.0% | |
TCTTCAATGCTCTTATCTTG+TGG | - | chr8.1:72212086-72212105 | MS.gene066434:CDS | 35.0% | |
TGCAATCTGACACAAAACTA+AGG | + | chr8.1:72212726-72212745 | None:intergenic | 35.0% | |
TTCTATCTGATGTTATGAGG+AGG | - | chr8.1:72213554-72213573 | MS.gene066434:CDS | 35.0% | |
TTGATCTTCACATTTCGCAT+TGG | + | chr8.1:72212667-72212686 | None:intergenic | 35.0% | |
TTGTCAAGCTATTGTTGTGT+TGG | + | chr8.1:72212767-72212786 | None:intergenic | 35.0% | |
TTTAAGCTCTTTCCTCTTCT+TGG | + | chr8.1:72212537-72212556 | None:intergenic | 35.0% | |
! | AATTTTGTCACAGATCCGAA+GGG | - | chr8.1:72214233-72214252 | MS.gene066434:intron | 35.0% |
! | ATTGAAGAACCTTGTTTGAG+CGG | + | chr8.1:72212074-72212093 | None:intergenic | 35.0% |
! | TAATTGATGTTTTCGGCAAC+AGG | - | chr8.1:72213085-72213104 | MS.gene066434:CDS | 35.0% |
! | TTCTTTTGTATAGGAACGGA+AGG | - | chr8.1:72212173-72212192 | MS.gene066434:intron | 35.0% |
!! | ATTGTTGTGTTGGTTCAACA+TGG | + | chr8.1:72212757-72212776 | None:intergenic | 35.0% |
!! | GTTTAAGGTGTACTTTTTGG+TGG | - | chr8.1:72211043-72211062 | MS.gene066434:intron | 35.0% |
!! | TGTCGATTTCATCAAGTACT+AGG | - | chr8.1:72212048-72212067 | MS.gene066434:CDS | 35.0% |
!! | TTGGAAGTTTTAATCCCCTT+CGG | + | chr8.1:72214251-72214270 | None:intergenic | 35.0% |
!!! | TAGTTTTGTGTCAGATTGCA+TGG | - | chr8.1:72212726-72212745 | MS.gene066434:intron | 35.0% |
!!! | TCTGTTGGTCTTTTTTCCTT+CGG | + | chr8.1:72214289-72214308 | None:intergenic | 35.0% |
!!! | TGATTTTTGAAACGGGGATT+GGG | + | chr8.1:72211262-72211281 | None:intergenic | 35.0% |
AAAAGGGTTTCTTATGGCCA+AGG | + | chr8.1:72213516-72213535 | None:intergenic | 40.0% | |
AAAATTCTTCACCTCCAGTC+AGG | + | chr8.1:72214219-72214238 | None:intergenic | 40.0% | |
AGTCAGGGATCGTAAAGTTA+GGG | + | chr8.1:72213804-72213823 | None:intergenic | 40.0% | |
AGTGATTTGATTGAGCCCTA+AGG | + | chr8.1:72211618-72211637 | None:intergenic | 40.0% | |
ATCTAGACCTATGTTGTCGA+TGG | + | chr8.1:72213226-72213245 | None:intergenic | 40.0% | |
ATGCATTATGGTTCACGGAA+TGG | + | chr8.1:72211186-72211205 | None:intergenic | 40.0% | |
CTTACATCTTGAACGAACTC+TGG | - | chr8.1:72213849-72213868 | MS.gene066434:intron | 40.0% | |
GAACGAACTCTGGATTATCA+GGG | - | chr8.1:72213859-72213878 | MS.gene066434:intron | 40.0% | |
GCTCTTGCTCGAATAATTGA+AGG | - | chr8.1:72212300-72212319 | MS.gene066434:intron | 40.0% | |
GCTGAAACTGTTAACATTGC+GGG | - | chr8.1:72213019-72213038 | MS.gene066434:intron | 40.0% | |
GGTGCATCTTTGAATAGGAA+CGG | + | chr8.1:72213198-72213217 | None:intergenic | 40.0% | |
TATAATCCAGGAAGAGAAGC+TGG | - | chr8.1:72212454-72212473 | MS.gene066434:intron | 40.0% | |
TCCTATTCAAAGATGCACCA+CGG | - | chr8.1:72213199-72213218 | MS.gene066434:CDS | 40.0% | |
TGAAATTTGAAGGGGGAATC+AGG | + | chr8.1:72213124-72213143 | None:intergenic | 40.0% | |
TGAACGAACTCTGGATTATC+AGG | - | chr8.1:72213858-72213877 | MS.gene066434:intron | 40.0% | |
TTCCTTCTCTAGGTGGTAAA+TGG | - | chr8.1:72214469-72214488 | MS.gene066434:intron | 40.0% | |
TTTGCCTGATGATCTTACAG+AGG | - | chr8.1:72212356-72212375 | MS.gene066434:intron | 40.0% | |
! | AGATGATGAAGCCTTATGTG+TGG | - | chr8.1:72211857-72211876 | MS.gene066434:intron | 40.0% |
! | ATTTTGTCACAGATCCGAAG+GGG | - | chr8.1:72214234-72214253 | MS.gene066434:intron | 40.0% |
! | GAAGTTTGAAGCCACACATA+AGG | + | chr8.1:72211871-72211890 | None:intergenic | 40.0% |
! | GAATTTTGTCACAGATCCGA+AGG | - | chr8.1:72214232-72214251 | MS.gene066434:intron | 40.0% |
! | TAAAGAGCGTGAGAGGATAA+AGG | - | chr8.1:72212553-72212572 | MS.gene066434:intron | 40.0% |
!! | CAACCAATGGCTTTAACTGA+AGG | + | chr8.1:72212266-72212285 | None:intergenic | 40.0% |
!!! | ATGACATCATTTTTAGCGGG+CGG | + | chr8.1:72213589-72213608 | None:intergenic | 40.0% |
!!! | GTGATTTTTGAAACGGGGAT+TGG | + | chr8.1:72211263-72211282 | None:intergenic | 40.0% |
!!! | TTCCTTTTTGACTTCCTGAC+TGG | - | chr8.1:72214202-72214221 | MS.gene066434:intron | 40.0% |
AAAAGAGGGCAACTAACGGT+AGG | - | chr8.1:72212988-72213007 | MS.gene066434:intron | 45.0% | |
ACCACCTAGAGAAGGAAGAA+AGG | + | chr8.1:72214466-72214485 | None:intergenic | 45.0% | |
ACCTAGAGAAGGAAGAAAGG+CGG | + | chr8.1:72214463-72214482 | None:intergenic | 45.0% | |
AGAGACTACCAAGCAAACTC+AGG | + | chr8.1:72211662-72211681 | None:intergenic | 45.0% | |
ATGCAAAGCCATCTTGCCTT+AGG | - | chr8.1:72211599-72211618 | MS.gene066434:intron | 45.0% | |
ATTATCAGGGCCATTACCGA+AGG | - | chr8.1:72213872-72213891 | MS.gene066434:intron | 45.0% | |
CAGCCTTCAGTTAAAGCCAT+TGG | - | chr8.1:72212260-72212279 | MS.gene066434:intron | 45.0% | |
CAGTCAGGGATCGTAAAGTT+AGG | + | chr8.1:72213805-72213824 | None:intergenic | 45.0% | |
CGGTAATAACCCTTCGGTAA+TGG | + | chr8.1:72213885-72213904 | None:intergenic | 45.0% | |
CTAACTTTACGATCCCTGAC+TGG | - | chr8.1:72213803-72213822 | MS.gene066434:intron | 45.0% | |
CTCCAGTCAGGAAGTCAAAA+AGG | + | chr8.1:72214207-72214226 | None:intergenic | 45.0% | |
GACACCTCTGTAAGATCATC+AGG | + | chr8.1:72212363-72212382 | None:intergenic | 45.0% | |
GACCATTTACCACCTAGAGA+AGG | + | chr8.1:72214474-72214493 | None:intergenic | 45.0% | |
GAGACTACCAAGCAAACTCA+GGG | + | chr8.1:72211661-72211680 | None:intergenic | 45.0% | |
TCCGTGGTGCATCTTTGAAT+AGG | + | chr8.1:72213203-72213222 | None:intergenic | 45.0% | |
TCCTCTTCTTGGCATACAAG+CGG | + | chr8.1:72212526-72212545 | None:intergenic | 45.0% | |
TGCAAAGCCATCTTGCCTTA+GGG | - | chr8.1:72211600-72211619 | MS.gene066434:intron | 45.0% | |
TTATCAGGGCCATTACCGAA+GGG | - | chr8.1:72213873-72213892 | MS.gene066434:intron | 45.0% | |
! | AAGAGCTTAAAGAGCGTGAG+AGG | - | chr8.1:72212546-72212565 | MS.gene066434:intron | 45.0% |
! | CGGTTCAAAAGCCTTATCCT+TGG | + | chr8.1:72212506-72212525 | None:intergenic | 45.0% |
! | TAAGGATGGTGATTCTAGGG+AGG | - | chr8.1:72211449-72211468 | MS.gene066434:intron | 45.0% |
! | TTCGAATCCCTGAGTTTGCT+TGG | - | chr8.1:72211651-72211670 | MS.gene066434:intron | 45.0% |
!! | ATTGCAGGACTGACTTGTTG+AGG | + | chr8.1:72212006-72212025 | None:intergenic | 45.0% |
!! | GATGATCTTACAGAGGTGTC+TGG | - | chr8.1:72212363-72212382 | MS.gene066434:intron | 45.0% |
!!! | CTTTTTGACTTCCTGACTGG+AGG | - | chr8.1:72214205-72214224 | MS.gene066434:intron | 45.0% |
AACTAAGGACGTTGCCACGT+TGG | + | chr8.1:72212711-72212730 | None:intergenic | 50.0% | |
AATGGTGTATCGCACCAACG+TGG | - | chr8.1:72212694-72212713 | MS.gene066434:intron | 50.0% | |
AATTGAAGGGAGATCACCGG+AGG | - | chr8.1:72212314-72212333 | MS.gene066434:intron | 50.0% | |
ACCGCCTTTCTTCCTTCTCT+AGG | - | chr8.1:72214459-72214478 | MS.gene066434:intron | 50.0% | |
ACCGCTTGTATGCCAAGAAG+AGG | - | chr8.1:72212522-72212541 | MS.gene066434:intron | 50.0% | |
AGTACTAGGCCGCTCAAACA+AGG | - | chr8.1:72212062-72212081 | MS.gene066434:CDS | 50.0% | |
CAGACTAGGCAAAATAGCGC+TGG | - | chr8.1:72213677-72213696 | MS.gene066434:intron | 50.0% | |
CGACTGGTGAGATCAACCAA+TGG | + | chr8.1:72212279-72212298 | None:intergenic | 50.0% | |
GATTGAGCCCTAAGGCAAGA+TGG | + | chr8.1:72211610-72211629 | None:intergenic | 50.0% | |
GCCTTTCTTCCTTCTCTAGG+TGG | - | chr8.1:72214462-72214481 | MS.gene066434:intron | 50.0% | |
GGCAACTAACGGTAGGTTCA+TGG | - | chr8.1:72212995-72213014 | MS.gene066434:intron | 50.0% | |
GGTTGTGCACTTGTCTTGTC+TGG | - | chr8.1:72211724-72211743 | MS.gene066434:intron | 50.0% | |
! | TATTCGAGCAAGAGCACGAC+TGG | + | chr8.1:72212295-72212314 | None:intergenic | 50.0% |
!! | TAGGCAAAATAGCGCTGGCA+AGG | - | chr8.1:72213682-72213701 | MS.gene066434:intron | 50.0% |
CCACGGACCATCGACAACAT+AGG | - | chr8.1:72213216-72213235 | MS.gene066434:CDS | 55.0% | |
CCTATGTTGTCGATGGTCCG+TGG | + | chr8.1:72213219-72213238 | None:intergenic | 55.0% | |
AGGGCTCCAGCTTCTCTTCC+TGG | + | chr8.1:72212463-72212482 | None:intergenic | 60.0% | |
CGTGTGTGCACACGCGAGAA+GGG | + | chr8.1:72211548-72211567 | None:intergenic | 60.0% | |
TCGTGTGTGCACACGCGAGA+AGG | + | chr8.1:72211549-72211568 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 72210944 | 72214497 | 72210944 | ID=MS.gene066434 |
chr8.1 | mRNA | 72210944 | 72214497 | 72210944 | ID=MS.gene066434.t1;Parent=MS.gene066434 |
chr8.1 | exon | 72214477 | 72214497 | 72214477 | ID=MS.gene066434.t1.exon1;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72214477 | 72214497 | 72214477 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
chr8.1 | exon | 72213358 | 72213582 | 72213358 | ID=MS.gene066434.t1.exon2;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72213358 | 72213582 | 72213358 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
chr8.1 | exon | 72213064 | 72213255 | 72213064 | ID=MS.gene066434.t1.exon3;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72213064 | 72213255 | 72213064 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
chr8.1 | exon | 72212867 | 72212977 | 72212867 | ID=MS.gene066434.t1.exon4;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72212867 | 72212977 | 72212867 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
chr8.1 | exon | 72212047 | 72212125 | 72212047 | ID=MS.gene066434.t1.exon5;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72212047 | 72212125 | 72212047 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
chr8.1 | exon | 72210944 | 72210960 | 72210944 | ID=MS.gene066434.t1.exon6;Parent=MS.gene066434.t1 |
chr8.1 | CDS | 72210944 | 72210960 | 72210944 | ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1 |
Gene Sequence |
Protein sequence |