AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066434


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066434.t1 MTR_8g030670 98.585 212 3 0 1 212 6 217 3.74e-153 429
MS.gene066434.t1 MTR_7g077810 85.646 209 30 0 1 209 6 214 4.97e-136 385
MS.gene066434.t1 MTR_6g053620 71.770 209 58 1 1 209 6 213 5.96e-110 319
MS.gene066434.t1 MTR_6g053620 71.770 209 58 1 1 209 6 213 1.49e-109 318
MS.gene066434.t1 MTR_2g100825 78.818 203 37 4 7 207 5 203 1.64e-107 311
MS.gene066434.t1 MTR_2g100830 69.903 206 57 3 7 210 5 207 1.23e-98 289
MS.gene066434.t1 MTR_8g007185 71.770 209 56 3 5 210 3 211 7.87e-95 278
MS.gene066434.t1 MTR_8g007205 71.292 209 57 3 5 210 3 211 3.83e-94 277
MS.gene066434.t1 MTR_8g007195 62.264 212 73 3 3 210 1 209 3.20e-82 248
MS.gene066434.t1 MTR_7g036780 60.952 210 68 5 5 210 3 202 5.20e-77 231
MS.gene066434.t1 MTR_8g007220 57.073 205 86 2 7 210 5 208 9.35e-75 228
MS.gene066434.t1 MTR_3g061700 56.757 148 33 2 63 209 1 118 8.99e-46 150
MS.gene066434.t1 MTR_3g110048 32.381 105 64 1 57 154 47 151 3.50e-15 70.5
MS.gene066434.t1 MTR_4g032400 30.216 139 86 4 13 145 14 147 5.59e-15 70.1
MS.gene066434.t1 MTR_7g094120 33.333 99 59 1 57 148 48 146 6.88e-15 69.7
MS.gene066434.t1 MTR_7g094150 37.234 94 52 2 58 145 48 140 1.04e-14 69.3
MS.gene066434.t1 MTR_4g033460 29.224 219 127 7 13 208 12 225 1.88e-14 70.5
MS.gene066434.t1 MTR_4g032460 32.117 137 84 4 11 145 5 134 2.67e-14 67.8
MS.gene066434.t1 MTR_7g094170 37.234 94 52 2 58 145 48 140 4.55e-14 67.4
MS.gene066434.t1 MTR_7g021400 34.409 93 56 1 58 145 48 140 4.74e-14 67.4
MS.gene066434.t1 MTR_8g468480 36.000 100 57 2 58 151 48 146 5.48e-14 67.4
MS.gene066434.t1 MTR_4g032510 39.785 93 54 2 58 149 50 141 6.14e-14 67.0
MS.gene066434.t1 MTR_1g099870 36.559 93 52 2 66 151 1 93 9.87e-14 65.1
MS.gene066434.t1 MTR_4g032450 29.577 142 89 4 13 148 26 162 1.03e-13 67.0
MS.gene066434.t1 MTR_5g022710 29.710 138 87 3 13 145 7 139 1.06e-13 66.6
MS.gene066434.t1 MTR_5g022730 28.986 138 88 3 13 145 7 139 1.23e-13 66.2
MS.gene066434.t1 MTR_4g033455 30.070 143 88 3 13 149 12 148 1.71e-13 65.9
MS.gene066434.t1 MTR_8g056060 30.000 150 94 3 13 156 8 152 2.58e-13 65.5
MS.gene066434.t1 MTR_4g032500 37.500 96 59 1 59 154 51 145 1.19e-12 63.5
MS.gene066434.t1 MTR_7g021380 33.333 96 59 1 55 145 45 140 1.99e-12 63.2
MS.gene066434.t1 MTR_8g089730 32.584 89 48 1 57 145 14 90 2.43e-12 61.6
MS.gene066434.t1 MTR_5g085030 29.897 97 63 1 57 148 47 143 2.58e-11 60.1
MS.gene066434.t1 MTR_4g021390 29.091 110 72 2 36 140 26 134 3.22e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066434.t1 AT3G61415 82.212 208 36 1 1 208 6 212 2.61e-126 360
MS.gene066434.t1 AT3G61415 82.212 208 36 1 1 208 6 212 4.19e-126 360
MS.gene066434.t1 AT2G45950 81.731 208 37 1 1 208 6 212 1.84e-125 358
MS.gene066434.t1 AT2G45950 81.731 208 37 1 1 208 6 212 1.84e-125 358
MS.gene066434.t1 AT2G45950 81.731 208 37 1 1 208 6 212 1.84e-125 358
MS.gene066434.t1 AT2G45950 81.731 208 37 1 1 208 6 212 7.20e-125 357
MS.gene066434.t1 AT2G45950 81.731 208 37 1 1 208 6 212 7.20e-125 357
MS.gene066434.t1 AT3G21850 33.103 145 90 4 8 149 1 141 6.33e-18 77.8
MS.gene066434.t1 AT1G75950 30.872 149 87 3 8 145 1 144 1.16e-14 69.3
MS.gene066434.t1 AT2G03170 37.234 94 57 2 57 149 45 137 1.48e-14 68.6
MS.gene066434.t1 AT4G34210 36.170 94 57 1 59 149 47 140 9.73e-14 66.6
MS.gene066434.t1 AT1G20140 29.747 158 93 5 10 155 5 156 2.46e-13 65.9
MS.gene066434.t1 AT2G25700 29.814 161 89 6 10 155 5 156 3.82e-13 65.1
MS.gene066434.t1 AT5G42190 31.250 112 55 2 55 145 45 155 5.82e-13 64.7
MS.gene066434.t1 AT3G21830 27.083 144 97 2 8 148 1 139 8.35e-13 63.9
MS.gene066434.t1 AT4G34470 35.106 94 58 1 59 149 47 140 1.06e-12 63.9
MS.gene066434.t1 AT3G21860 28.276 145 96 4 8 149 1 140 4.52e-11 59.3
MS.gene066434.t1 AT3G60020 28.082 146 93 5 9 148 1 140 4.70e-11 59.3

Find 40 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAAGCTCTTTCCTCTTCT+TGG 0.128563 8.1:+72212885 None:intergenic
CAATCTCTTGTTCAACTTGT+TGG 0.233800 8.1:+72213516 None:intergenic
AATATTTCTTGACATATAAA+TGG 0.241293 8.1:+72213482 None:intergenic
TTCCTTCTCTAGGTGGTAAA+TGG 0.319299 8.1:-72210950 MS.gene066434:intron
AAGACATACTGAACAATTCT+TGG 0.364803 8.1:+72213439 None:intergenic
TGTCAAGAAATATTACAAAA+AGG 0.366988 8.1:-72213473 MS.gene066434:CDS
AGAATTAAGCTCAACATTGC+AGG 0.377228 8.1:+72213401 None:intergenic
TAAAGAGCGTGAGAGGATAA+AGG 0.430215 8.1:-72212866 MS.gene066434:intron
GAAGTTTGAAGCCACACATA+AGG 0.447376 8.1:+72213551 None:intergenic
CAGCCTTCAGTTAAAGCCAT+TGG 0.449173 8.1:-72213159 MS.gene066434:CDS
TGTCGATTTCATCAAGTACT+AGG 0.451108 8.1:-72213371 MS.gene066434:CDS
TTCCATTAATAAAAGACAAA+AGG 0.453283 8.1:+72212056 None:intergenic
GACACCTCTGTAAGATCATC+AGG 0.476044 8.1:+72213059 None:intergenic
ATCATCAGTTATGTTTCTCA+AGG 0.487275 8.1:+72212939 None:intergenic
GCTCTTGCTCGAATAATTGA+AGG 0.493143 8.1:-72213119 MS.gene066434:CDS
TATAATCCAGGAAGAGAAGC+TGG 0.494548 8.1:-72212965 MS.gene066434:intron
TATTCGAGCAAGAGCACGAC+TGG 0.501432 8.1:+72213127 None:intergenic
AACTTGTTGGATTGATTCAT+CGG 0.503720 8.1:+72213529 None:intergenic
TAACTGATGATCCAAGGATA+AGG 0.514531 8.1:-72212927 MS.gene066434:CDS
TTTATTAATGGAAATGATGG+AGG 0.529025 8.1:-72212046 MS.gene066434:intron
CGGTTCAAAAGCCTTATCCT+TGG 0.529113 8.1:+72212916 None:intergenic
TTTCATGTTTCAGAATGTTG+AGG 0.538493 8.1:-72212116 MS.gene066434:intron
AAGAGCTTAAAGAGCGTGAG+AGG 0.550859 8.1:-72212873 MS.gene066434:CDS
CTTATGATGAGAAATTCGTT+AGG 0.551402 8.1:-72213223 MS.gene066434:CDS
TCCTCTTCTTGGCATACAAG+CGG 0.552561 8.1:+72212896 None:intergenic
CAACCAATGGCTTTAACTGA+AGG 0.566317 8.1:+72213156 None:intergenic
ATTGCAGGACTGACTTGTTG+AGG 0.581903 8.1:+72213416 None:intergenic
AATATATCACGAATCTCCTC+CGG 0.585815 8.1:+72213089 None:intergenic
AGTACTAGGCCGCTCAAACA+AGG 0.587931 8.1:-72213357 MS.gene066434:intron
ATTGAAGAACCTTGTTTGAG+CGG 0.591670 8.1:+72213348 None:intergenic
ACCGCTTGTATGCCAAGAAG+AGG 0.592240 8.1:-72212897 MS.gene066434:CDS
AATAATTGAAGGGAGATCAC+CGG 0.593273 8.1:-72213108 MS.gene066434:CDS
TCATCAGTTATGTTTCTCAA+GGG 0.605396 8.1:+72212940 None:intergenic
GAAACATAACTGATGATCCA+AGG 0.605496 8.1:-72212933 MS.gene066434:CDS
CTCTTGCTCGAATAATTGAA+GGG 0.613445 8.1:-72213118 MS.gene066434:CDS
TTTGCCTGATGATCTTACAG+AGG 0.655792 8.1:-72213063 MS.gene066434:intron
CATGGCAGTTATTAAACCCG+AGG 0.683521 8.1:-72214476 MS.gene066434:intron
AGATGATGAAGCCTTATGTG+TGG 0.697842 8.1:-72213562 MS.gene066434:CDS
CGACTGGTGAGATCAACCAA+TGG 0.697991 8.1:+72213143 None:intergenic
AATTGAAGGGAGATCACCGG+AGG 0.707838 8.1:-72213105 MS.gene066434:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATCCAAAAAAATATAAT+CGG + chr8.1:72212410-72212429 None:intergenic 10.0%
!! TAAGAAAATTATTTATAAAC+CGG - chr8.1:72213976-72213995 MS.gene066434:intron 10.0%
!! TTAAACAAAATTTAACAATT+GGG + chr8.1:72211029-72211048 None:intergenic 10.0%
!!! CAAAACTTTTTTATAATTTA+GGG + chr8.1:72213272-72213291 None:intergenic 10.0%
!!! TAAGTTTAAAAGTATAAAAA+TGG + chr8.1:72211761-72211780 None:intergenic 10.0%
!!! TCAAAACTTTTTTATAATTT+AGG + chr8.1:72213273-72213292 None:intergenic 10.0%
!! AATATTTCTTGACATATAAA+TGG + chr8.1:72211940-72211959 None:intergenic 15.0%
!! ATAAATAGTTAACTTTAATC+CGG + chr8.1:72213998-72214017 None:intergenic 15.0%
!! CTTAAACAAAATTTAACAAT+TGG + chr8.1:72211030-72211049 None:intergenic 15.0%
!!! AAAATATTTGAGATTCTTTT+AGG - chr8.1:72214150-72214169 MS.gene066434:intron 15.0%
!!! AAATATTTGAGATTCTTTTA+GGG - chr8.1:72214151-72214170 MS.gene066434:intron 15.0%
!!! AAGAAATTTGTATGATTTTT+GGG - chr8.1:72214098-72214117 MS.gene066434:intron 15.0%
!!! ACTGGAATAATTTTTATATA+AGG - chr8.1:72213821-72213840 MS.gene066434:intron 15.0%
!!! CAATTGTTAAATTTTGTTTA+AGG - chr8.1:72211028-72211047 MS.gene066434:intron 15.0%
!!! GAAATTGAATTTTAGAAATT+AGG - chr8.1:72212951-72212970 MS.gene066434:CDS 15.0%
!!! TAAGAAATTTGTATGATTTT+TGG - chr8.1:72214097-72214116 MS.gene066434:intron 15.0%
!! AAATCACCTTAATCTATTTA+AGG - chr8.1:72211431-72211450 MS.gene066434:intron 20.0%
!! AAATGTTTGTCTTATAGAAA+AGG + chr8.1:72213727-72213746 None:intergenic 20.0%
!! AATGTTTGTCTTATAGAAAA+GGG + chr8.1:72213726-72213745 None:intergenic 20.0%
!! AGAAAGTAAAATCTAAAAGA+GGG - chr8.1:72212974-72212993 MS.gene066434:intron 20.0%
!! ATATAAAAATTATTCCAGTC+AGG + chr8.1:72213820-72213839 None:intergenic 20.0%
!! ATATCTAATGTTTACATAGT+TGG + chr8.1:72211581-72211600 None:intergenic 20.0%
!! GATGTACAAATAATTTCAAT+AGG - chr8.1:72211156-72211175 MS.gene066434:intron 20.0%
!! TAATAAAACTGACACTATAT+TGG - chr8.1:72211817-72211836 MS.gene066434:intron 20.0%
!! TATAAAAATTATTCCAGTCA+GGG + chr8.1:72213819-72213838 None:intergenic 20.0%
!! TGTCAAGAAATATTACAAAA+AGG - chr8.1:72211946-72211965 MS.gene066434:intron 20.0%
!! TGTTTATAAGTAAAAGACAA+AGG + chr8.1:72211084-72211103 None:intergenic 20.0%
!! TTCCATTAATAAAAGACAAA+AGG + chr8.1:72213366-72213385 None:intergenic 20.0%
!! TTGTTTCACGTAATATTTAA+TGG - chr8.1:72211125-72211144 MS.gene066434:intron 20.0%
!!! AAAATCTGTGATTTTTGAAA+CGG + chr8.1:72211270-72211289 None:intergenic 20.0%
!!! TAATGTTCGTCTTTTAAAAA+GGG + chr8.1:72213532-72213551 None:intergenic 20.0%
!!! TACAGTTAATTTTTTAGTGA+TGG + chr8.1:72214438-72214457 None:intergenic 20.0%
!!! TCTTTTATTAATGGAAATGA+TGG - chr8.1:72213370-72213389 MS.gene066434:CDS 20.0%
! AACTTAGATATAAAAAACCC+TGG - chr8.1:72212908-72212927 MS.gene066434:CDS 25.0%
! AATTTGCCACAACAATTTAT+CGG + chr8.1:72213905-72213924 None:intergenic 25.0%
! ACCATACAACAATAAAAAGA+AGG - chr8.1:72212839-72212858 MS.gene066434:intron 25.0%
! ATCTAAGTTTCTGATATAGA+AGG + chr8.1:72212897-72212916 None:intergenic 25.0%
! ATGTTTGTCTTATAGAAAAG+GGG + chr8.1:72213725-72213744 None:intergenic 25.0%
! CAAATGATGTGACAATATAA+GGG + chr8.1:72214074-72214093 None:intergenic 25.0%
! CTTATATTGTCACATCATTT+GGG - chr8.1:72214073-72214092 MS.gene066434:intron 25.0%
! GAAATATTACAAAAAGGCAA+TGG - chr8.1:72211952-72211971 MS.gene066434:intron 25.0%
! GAGAAAGTAAAATCTAAAAG+AGG - chr8.1:72212973-72212992 MS.gene066434:intron 25.0%
! GATCTGTCAATTAAATAACA+CGG - chr8.1:72211507-72211526 MS.gene066434:intron 25.0%
! GATGTCATTGTAAAATTAAG+AGG - chr8.1:72213601-72213620 MS.gene066434:intron 25.0%
! GTAATATTTAATGGCATCAT+TGG - chr8.1:72211134-72211153 MS.gene066434:intron 25.0%
! TTATAAGAATGTGTGAGAAA+TGG + chr8.1:72212439-72212458 None:intergenic 25.0%
! TTATACACTGCTAAATCATT+TGG - chr8.1:72214375-72214394 MS.gene066434:intron 25.0%
! TTATTACCGATAAATTGTTG+TGG - chr8.1:72213896-72213915 MS.gene066434:intron 25.0%
! TTCACAATAAAAATCTTCCA+GGG + chr8.1:72212928-72212947 None:intergenic 25.0%
! TTCTATTTAATGTTACTCCT+TGG - chr8.1:72213496-72213515 MS.gene066434:CDS 25.0%
! TTTATTAATGGAAATGATGG+AGG - chr8.1:72213373-72213392 MS.gene066434:CDS 25.0%
! TTTCACAATAAAAATCTTCC+AGG + chr8.1:72212929-72212948 None:intergenic 25.0%
!! AAATAGAAAGTGCACAAATT+AGG + chr8.1:72213484-72213503 None:intergenic 25.0%
!! ACCTTCTTTTTATTGTTGTA+TGG + chr8.1:72212843-72212862 None:intergenic 25.0%
!! ATTGGGATTCAATTTTGTAT+GGG + chr8.1:72211245-72211264 None:intergenic 25.0%
!! GACCTTTTGTCTTTTATTAA+TGG - chr8.1:72213361-72213380 MS.gene066434:CDS 25.0%
!! GATACAAGTTTTTATTATCG+TGG - chr8.1:72214019-72214038 MS.gene066434:intron 25.0%
!! GATTTTCTTTTGTATAGGAA+CGG - chr8.1:72212169-72212188 MS.gene066434:intron 25.0%
!! TCTGATCTAATTGATGTTTT+CGG - chr8.1:72213078-72213097 MS.gene066434:CDS 25.0%
!!! AAAATCACAGATTTTGAAAC+TGG - chr8.1:72211275-72211294 MS.gene066434:intron 25.0%
!!! AAATCTGTGATTTTTGAAAC+GGG + chr8.1:72211269-72211288 None:intergenic 25.0%
!!! ACTTCTCTTTGTTTTACTTT+TGG - chr8.1:72211794-72211813 MS.gene066434:intron 25.0%
!!! CTTTTAAAAAGGGTTTCTTA+TGG + chr8.1:72213522-72213541 None:intergenic 25.0%
!!! GTAATGTTCGTCTTTTAAAA+AGG + chr8.1:72213533-72213552 None:intergenic 25.0%
!!! GTATGCCGATTATATTTTTT+TGG - chr8.1:72212402-72212421 MS.gene066434:intron 25.0%
!!! GTATGGTTTTTTTTGTTGTT+CGG + chr8.1:72212826-72212845 None:intergenic 25.0%
!!! TACAATGACATCATTTTTAG+CGG + chr8.1:72213593-72213612 None:intergenic 25.0%
!!! TTTGTTTAAGGTGTACTTTT+TGG - chr8.1:72211040-72211059 MS.gene066434:intron 25.0%
AAACAGCCATAAATGCATTA+TGG + chr8.1:72211198-72211217 None:intergenic 30.0%
AAAGAAGGTGAGTGAATATA+AGG - chr8.1:72212854-72212873 MS.gene066434:intron 30.0%
AAAGAGAAGTCTTCAATGAT+AGG + chr8.1:72211784-72211803 None:intergenic 30.0%
AAATTGTTGTGGCAAATTTG+TGG - chr8.1:72213907-72213926 MS.gene066434:intron 30.0%
AACTAGAGCTTGAAATTTGA+AGG + chr8.1:72213134-72213153 None:intergenic 30.0%
AAGACATACTGAACAATTCT+TGG + chr8.1:72211983-72212002 None:intergenic 30.0%
AATTGTTGTGGCAAATTTGT+GGG - chr8.1:72213908-72213927 MS.gene066434:intron 30.0%
ACAGAAGAATTCTTCTTTGA+AGG - chr8.1:72214304-72214323 MS.gene066434:intron 30.0%
ACTAGAGCTTGAAATTTGAA+GGG + chr8.1:72213133-72213152 None:intergenic 30.0%
ACTTTCTATCTGATGTTATG+AGG - chr8.1:72213551-72213570 MS.gene066434:CDS 30.0%
AGAATAAAAAGAAGAACCGA+AGG - chr8.1:72214270-72214289 MS.gene066434:intron 30.0%
ATATCACAGAATATCTCACT+CGG - chr8.1:72212145-72212164 MS.gene066434:intron 30.0%
ATCATCAGTTATGTTTCTCA+AGG + chr8.1:72212483-72212502 None:intergenic 30.0%
ATGCATTTATGGCTGTTTAA+TGG - chr8.1:72211200-72211219 MS.gene066434:intron 30.0%
ATTTAAGGATGGTGATTCTA+GGG - chr8.1:72211446-72211465 MS.gene066434:intron 30.0%
ATTTATCGGTAATAACCCTT+CGG + chr8.1:72213891-72213910 None:intergenic 30.0%
CACCATCCTTAAATAGATTA+AGG + chr8.1:72211440-72211459 None:intergenic 30.0%
CACCTTAATCTATTTAAGGA+TGG - chr8.1:72211435-72211454 MS.gene066434:intron 30.0%
CATAAATGCATTATGGTTCA+CGG + chr8.1:72211191-72211210 None:intergenic 30.0%
CCAAATGATGTGACAATATA+AGG + chr8.1:72214075-72214094 None:intergenic 30.0%
CCTTATATTGTCACATCATT+TGG - chr8.1:72214072-72214091 MS.gene066434:intron 30.0%
CTTATGATGAGAAATTCGTT+AGG - chr8.1:72212196-72212215 MS.gene066434:intron 30.0%
GATTGTAGACAAAATGAGAT+AGG - chr8.1:72213052-72213071 MS.gene066434:intron 30.0%
TACAGAAAGATATCATACCT+CGG + chr8.1:72210963-72210982 None:intergenic 30.0%
TAGCTTGACAATGTTCATTT+AGG - chr8.1:72212776-72212795 MS.gene066434:intron 30.0%
TATTTAAGGATGGTGATTCT+AGG - chr8.1:72211445-72211464 MS.gene066434:intron 30.0%
TCAAAGAAGAATTCTTCTGT+TGG + chr8.1:72214304-72214323 None:intergenic 30.0%
TCATCAGTTATGTTTCTCAA+GGG + chr8.1:72212482-72212501 None:intergenic 30.0%
TGAATGAACATAGAGTCTAT+TGG - chr8.1:72214412-72214431 MS.gene066434:intron 30.0%
TGTGATATTTGTTCAGACTA+GGG + chr8.1:72212133-72212152 None:intergenic 30.0%
TGTTTGTCTTATAGAAAAGG+GGG + chr8.1:72213724-72213743 None:intergenic 30.0%
TTTAATTGACAGATCATGCA+TGG + chr8.1:72211502-72211521 None:intergenic 30.0%
TTTACAACAACCTTCTTATG+TGG + chr8.1:72214341-72214360 None:intergenic 30.0%
TTTCATGTTTCAGAATGTTG+AGG - chr8.1:72213303-72213322 MS.gene066434:intron 30.0%
TTTCTCTATGACTGTTGTAA+TGG - chr8.1:72211703-72211722 MS.gene066434:intron 30.0%
! GATTGGGATTCAATTTTGTA+TGG + chr8.1:72211246-72211265 None:intergenic 30.0%
! TCATTTAGGACATACTTTGT+TGG - chr8.1:72212790-72212809 MS.gene066434:intron 30.0%
! TCGGTGATTTTCTTTTGTAT+AGG - chr8.1:72212164-72212183 MS.gene066434:intron 30.0%
! TCGGTTCTTCTTTTTATTCT+TGG + chr8.1:72214270-72214289 None:intergenic 30.0%
! TCTCAATTTTATGACAGACT+AGG - chr8.1:72213663-72213682 MS.gene066434:intron 30.0%
! TTGGGATTCAATTTTGTATG+GGG + chr8.1:72211244-72211263 None:intergenic 30.0%
!! AACTTGTTGGATTGATTCAT+CGG + chr8.1:72211893-72211912 None:intergenic 30.0%
!! CAACATTCTGAAACATGAAA+GGG + chr8.1:72213303-72213322 None:intergenic 30.0%
!! GTTACTGTGTTTTGCTTTTA+AGG - chr8.1:72211392-72211411 MS.gene066434:intron 30.0%
!! TCAACATTCTGAAACATGAA+AGG + chr8.1:72213304-72213323 None:intergenic 30.0%
!!! AATCTGTGATTTTTGAAACG+GGG + chr8.1:72211268-72211287 None:intergenic 30.0%
!!! ACAATGACATCATTTTTAGC+GGG + chr8.1:72213592-72213611 None:intergenic 30.0%
AATAATTGAAGGGAGATCAC+CGG - chr8.1:72212311-72212330 MS.gene066434:intron 35.0%
AATATATCACGAATCTCCTC+CGG + chr8.1:72212333-72212352 None:intergenic 35.0%
ACAGAAAGATATCATACCTC+GGG + chr8.1:72210962-72210981 None:intergenic 35.0%
AGAATTAAGCTCAACATTGC+AGG + chr8.1:72212021-72212040 None:intergenic 35.0%
AGCACATCATTAACGAACTT+TGG + chr8.1:72214047-72214066 None:intergenic 35.0%
AGCTGAAACTGTTAACATTG+CGG - chr8.1:72213018-72213037 MS.gene066434:intron 35.0%
ATCATCTGTACCACATAAGA+AGG - chr8.1:72214328-72214347 MS.gene066434:intron 35.0%
ATCTAAAAGAGGGCAACTAA+CGG - chr8.1:72212984-72213003 MS.gene066434:intron 35.0%
CAATCTCTTGTTCAACTTGT+TGG + chr8.1:72211906-72211925 None:intergenic 35.0%
CGTGAACCATAATGCATTTA+TGG - chr8.1:72211189-72211208 MS.gene066434:intron 35.0%
CTAGAGCTTGAAATTTGAAG+GGG + chr8.1:72213132-72213151 None:intergenic 35.0%
CTCACACATTCTTATAATCC+AGG - chr8.1:72212442-72212461 MS.gene066434:intron 35.0%
CTCTTGCTCGAATAATTGAA+GGG - chr8.1:72212301-72212320 MS.gene066434:intron 35.0%
CTGTGATATTTGTTCAGACT+AGG + chr8.1:72212134-72212153 None:intergenic 35.0%
GAAACATAACTGATGATCCA+AGG - chr8.1:72212486-72212505 MS.gene066434:intron 35.0%
GTCTGTCATAAAATTGAGAC+TGG + chr8.1:72213662-72213681 None:intergenic 35.0%
GTGAAGATCAATGTTGTCAA+TGG - chr8.1:72212676-72212695 MS.gene066434:intron 35.0%
TAACTGATGATCCAAGGATA+AGG - chr8.1:72212492-72212511 MS.gene066434:intron 35.0%
TAGAGCTTGAAATTTGAAGG+GGG + chr8.1:72213131-72213150 None:intergenic 35.0%
TCTTCAATGCTCTTATCTTG+TGG - chr8.1:72212086-72212105 MS.gene066434:CDS 35.0%
TGCAATCTGACACAAAACTA+AGG + chr8.1:72212726-72212745 None:intergenic 35.0%
TTCTATCTGATGTTATGAGG+AGG - chr8.1:72213554-72213573 MS.gene066434:CDS 35.0%
TTGATCTTCACATTTCGCAT+TGG + chr8.1:72212667-72212686 None:intergenic 35.0%
TTGTCAAGCTATTGTTGTGT+TGG + chr8.1:72212767-72212786 None:intergenic 35.0%
TTTAAGCTCTTTCCTCTTCT+TGG + chr8.1:72212537-72212556 None:intergenic 35.0%
! AATTTTGTCACAGATCCGAA+GGG - chr8.1:72214233-72214252 MS.gene066434:intron 35.0%
! ATTGAAGAACCTTGTTTGAG+CGG + chr8.1:72212074-72212093 None:intergenic 35.0%
! TAATTGATGTTTTCGGCAAC+AGG - chr8.1:72213085-72213104 MS.gene066434:CDS 35.0%
! TTCTTTTGTATAGGAACGGA+AGG - chr8.1:72212173-72212192 MS.gene066434:intron 35.0%
!! ATTGTTGTGTTGGTTCAACA+TGG + chr8.1:72212757-72212776 None:intergenic 35.0%
!! GTTTAAGGTGTACTTTTTGG+TGG - chr8.1:72211043-72211062 MS.gene066434:intron 35.0%
!! TGTCGATTTCATCAAGTACT+AGG - chr8.1:72212048-72212067 MS.gene066434:CDS 35.0%
!! TTGGAAGTTTTAATCCCCTT+CGG + chr8.1:72214251-72214270 None:intergenic 35.0%
!!! TAGTTTTGTGTCAGATTGCA+TGG - chr8.1:72212726-72212745 MS.gene066434:intron 35.0%
!!! TCTGTTGGTCTTTTTTCCTT+CGG + chr8.1:72214289-72214308 None:intergenic 35.0%
!!! TGATTTTTGAAACGGGGATT+GGG + chr8.1:72211262-72211281 None:intergenic 35.0%
AAAAGGGTTTCTTATGGCCA+AGG + chr8.1:72213516-72213535 None:intergenic 40.0%
AAAATTCTTCACCTCCAGTC+AGG + chr8.1:72214219-72214238 None:intergenic 40.0%
AGTCAGGGATCGTAAAGTTA+GGG + chr8.1:72213804-72213823 None:intergenic 40.0%
AGTGATTTGATTGAGCCCTA+AGG + chr8.1:72211618-72211637 None:intergenic 40.0%
ATCTAGACCTATGTTGTCGA+TGG + chr8.1:72213226-72213245 None:intergenic 40.0%
ATGCATTATGGTTCACGGAA+TGG + chr8.1:72211186-72211205 None:intergenic 40.0%
CTTACATCTTGAACGAACTC+TGG - chr8.1:72213849-72213868 MS.gene066434:intron 40.0%
GAACGAACTCTGGATTATCA+GGG - chr8.1:72213859-72213878 MS.gene066434:intron 40.0%
GCTCTTGCTCGAATAATTGA+AGG - chr8.1:72212300-72212319 MS.gene066434:intron 40.0%
GCTGAAACTGTTAACATTGC+GGG - chr8.1:72213019-72213038 MS.gene066434:intron 40.0%
GGTGCATCTTTGAATAGGAA+CGG + chr8.1:72213198-72213217 None:intergenic 40.0%
TATAATCCAGGAAGAGAAGC+TGG - chr8.1:72212454-72212473 MS.gene066434:intron 40.0%
TCCTATTCAAAGATGCACCA+CGG - chr8.1:72213199-72213218 MS.gene066434:CDS 40.0%
TGAAATTTGAAGGGGGAATC+AGG + chr8.1:72213124-72213143 None:intergenic 40.0%
TGAACGAACTCTGGATTATC+AGG - chr8.1:72213858-72213877 MS.gene066434:intron 40.0%
TTCCTTCTCTAGGTGGTAAA+TGG - chr8.1:72214469-72214488 MS.gene066434:intron 40.0%
TTTGCCTGATGATCTTACAG+AGG - chr8.1:72212356-72212375 MS.gene066434:intron 40.0%
! AGATGATGAAGCCTTATGTG+TGG - chr8.1:72211857-72211876 MS.gene066434:intron 40.0%
! ATTTTGTCACAGATCCGAAG+GGG - chr8.1:72214234-72214253 MS.gene066434:intron 40.0%
! GAAGTTTGAAGCCACACATA+AGG + chr8.1:72211871-72211890 None:intergenic 40.0%
! GAATTTTGTCACAGATCCGA+AGG - chr8.1:72214232-72214251 MS.gene066434:intron 40.0%
! TAAAGAGCGTGAGAGGATAA+AGG - chr8.1:72212553-72212572 MS.gene066434:intron 40.0%
!! CAACCAATGGCTTTAACTGA+AGG + chr8.1:72212266-72212285 None:intergenic 40.0%
!!! ATGACATCATTTTTAGCGGG+CGG + chr8.1:72213589-72213608 None:intergenic 40.0%
!!! GTGATTTTTGAAACGGGGAT+TGG + chr8.1:72211263-72211282 None:intergenic 40.0%
!!! TTCCTTTTTGACTTCCTGAC+TGG - chr8.1:72214202-72214221 MS.gene066434:intron 40.0%
AAAAGAGGGCAACTAACGGT+AGG - chr8.1:72212988-72213007 MS.gene066434:intron 45.0%
ACCACCTAGAGAAGGAAGAA+AGG + chr8.1:72214466-72214485 None:intergenic 45.0%
ACCTAGAGAAGGAAGAAAGG+CGG + chr8.1:72214463-72214482 None:intergenic 45.0%
AGAGACTACCAAGCAAACTC+AGG + chr8.1:72211662-72211681 None:intergenic 45.0%
ATGCAAAGCCATCTTGCCTT+AGG - chr8.1:72211599-72211618 MS.gene066434:intron 45.0%
ATTATCAGGGCCATTACCGA+AGG - chr8.1:72213872-72213891 MS.gene066434:intron 45.0%
CAGCCTTCAGTTAAAGCCAT+TGG - chr8.1:72212260-72212279 MS.gene066434:intron 45.0%
CAGTCAGGGATCGTAAAGTT+AGG + chr8.1:72213805-72213824 None:intergenic 45.0%
CGGTAATAACCCTTCGGTAA+TGG + chr8.1:72213885-72213904 None:intergenic 45.0%
CTAACTTTACGATCCCTGAC+TGG - chr8.1:72213803-72213822 MS.gene066434:intron 45.0%
CTCCAGTCAGGAAGTCAAAA+AGG + chr8.1:72214207-72214226 None:intergenic 45.0%
GACACCTCTGTAAGATCATC+AGG + chr8.1:72212363-72212382 None:intergenic 45.0%
GACCATTTACCACCTAGAGA+AGG + chr8.1:72214474-72214493 None:intergenic 45.0%
GAGACTACCAAGCAAACTCA+GGG + chr8.1:72211661-72211680 None:intergenic 45.0%
TCCGTGGTGCATCTTTGAAT+AGG + chr8.1:72213203-72213222 None:intergenic 45.0%
TCCTCTTCTTGGCATACAAG+CGG + chr8.1:72212526-72212545 None:intergenic 45.0%
TGCAAAGCCATCTTGCCTTA+GGG - chr8.1:72211600-72211619 MS.gene066434:intron 45.0%
TTATCAGGGCCATTACCGAA+GGG - chr8.1:72213873-72213892 MS.gene066434:intron 45.0%
! AAGAGCTTAAAGAGCGTGAG+AGG - chr8.1:72212546-72212565 MS.gene066434:intron 45.0%
! CGGTTCAAAAGCCTTATCCT+TGG + chr8.1:72212506-72212525 None:intergenic 45.0%
! TAAGGATGGTGATTCTAGGG+AGG - chr8.1:72211449-72211468 MS.gene066434:intron 45.0%
! TTCGAATCCCTGAGTTTGCT+TGG - chr8.1:72211651-72211670 MS.gene066434:intron 45.0%
!! ATTGCAGGACTGACTTGTTG+AGG + chr8.1:72212006-72212025 None:intergenic 45.0%
!! GATGATCTTACAGAGGTGTC+TGG - chr8.1:72212363-72212382 MS.gene066434:intron 45.0%
!!! CTTTTTGACTTCCTGACTGG+AGG - chr8.1:72214205-72214224 MS.gene066434:intron 45.0%
AACTAAGGACGTTGCCACGT+TGG + chr8.1:72212711-72212730 None:intergenic 50.0%
AATGGTGTATCGCACCAACG+TGG - chr8.1:72212694-72212713 MS.gene066434:intron 50.0%
AATTGAAGGGAGATCACCGG+AGG - chr8.1:72212314-72212333 MS.gene066434:intron 50.0%
ACCGCCTTTCTTCCTTCTCT+AGG - chr8.1:72214459-72214478 MS.gene066434:intron 50.0%
ACCGCTTGTATGCCAAGAAG+AGG - chr8.1:72212522-72212541 MS.gene066434:intron 50.0%
AGTACTAGGCCGCTCAAACA+AGG - chr8.1:72212062-72212081 MS.gene066434:CDS 50.0%
CAGACTAGGCAAAATAGCGC+TGG - chr8.1:72213677-72213696 MS.gene066434:intron 50.0%
CGACTGGTGAGATCAACCAA+TGG + chr8.1:72212279-72212298 None:intergenic 50.0%
GATTGAGCCCTAAGGCAAGA+TGG + chr8.1:72211610-72211629 None:intergenic 50.0%
GCCTTTCTTCCTTCTCTAGG+TGG - chr8.1:72214462-72214481 MS.gene066434:intron 50.0%
GGCAACTAACGGTAGGTTCA+TGG - chr8.1:72212995-72213014 MS.gene066434:intron 50.0%
GGTTGTGCACTTGTCTTGTC+TGG - chr8.1:72211724-72211743 MS.gene066434:intron 50.0%
! TATTCGAGCAAGAGCACGAC+TGG + chr8.1:72212295-72212314 None:intergenic 50.0%
!! TAGGCAAAATAGCGCTGGCA+AGG - chr8.1:72213682-72213701 MS.gene066434:intron 50.0%
CCACGGACCATCGACAACAT+AGG - chr8.1:72213216-72213235 MS.gene066434:CDS 55.0%
CCTATGTTGTCGATGGTCCG+TGG + chr8.1:72213219-72213238 None:intergenic 55.0%
AGGGCTCCAGCTTCTCTTCC+TGG + chr8.1:72212463-72212482 None:intergenic 60.0%
CGTGTGTGCACACGCGAGAA+GGG + chr8.1:72211548-72211567 None:intergenic 60.0%
TCGTGTGTGCACACGCGAGA+AGG + chr8.1:72211549-72211568 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 72210944 72214497 72210944 ID=MS.gene066434
chr8.1 mRNA 72210944 72214497 72210944 ID=MS.gene066434.t1;Parent=MS.gene066434
chr8.1 exon 72214477 72214497 72214477 ID=MS.gene066434.t1.exon1;Parent=MS.gene066434.t1
chr8.1 CDS 72214477 72214497 72214477 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
chr8.1 exon 72213358 72213582 72213358 ID=MS.gene066434.t1.exon2;Parent=MS.gene066434.t1
chr8.1 CDS 72213358 72213582 72213358 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
chr8.1 exon 72213064 72213255 72213064 ID=MS.gene066434.t1.exon3;Parent=MS.gene066434.t1
chr8.1 CDS 72213064 72213255 72213064 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
chr8.1 exon 72212867 72212977 72212867 ID=MS.gene066434.t1.exon4;Parent=MS.gene066434.t1
chr8.1 CDS 72212867 72212977 72212867 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
chr8.1 exon 72212047 72212125 72212047 ID=MS.gene066434.t1.exon5;Parent=MS.gene066434.t1
chr8.1 CDS 72212047 72212125 72212047 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
chr8.1 exon 72210944 72210960 72210944 ID=MS.gene066434.t1.exon6;Parent=MS.gene066434.t1
chr8.1 CDS 72210944 72210960 72210944 ID=cds.MS.gene066434.t1;Parent=MS.gene066434.t1
Gene Sequence

>MS.gene066434

ATGGCAGTTATTAAACCCGAGGTATGATATCTTTCTGTATAAGTGAATATATGATTTTTTTTTTTTTAAAAAAACTATCTAGCCCAATTGTTAAATTTTGTTTAAGGTGTACTTTTTGGTGGTAATGTTAACTTATTCCTTTGTCTTTTACTTATAAACAATTTATTCTGCTTTATATGATTTGTTTCACGTAATATTTAATGGCATCATTGGATGTACAAATAATTTCAATAGGTTTACCATTCCGTGAACCATAATGCATTTATGGCTGTTTAATGGTTCAGTGTTATATTTTTTCCCCATACAAAATTGAATCCCAATCCCCGTTTCAAAAATCACAGATTTTGAAACTGGATGAATAAGTTTGTATTCTATTTTTTATGTTTTATGTGTATTTGTTGACATTTGAAGCTTGTAATTATTAGACGTGACTTTGTGAATACAGACTGTTACTGTGTTTTGCTTTTAAGGAATCAATTTAGCGCTGAAATCACCTTAATCTATTTAAGGATGGTGATTCTAGGGAGGAATCATCTTTTTAAAATTTACAGTTATCCATGCATGATCTGTCAATTAAATAACACGGAGTTTTAAAGTTGAACCCTTCTCGCGTGTGCACACACGAGCACACATTCCAACTATGTAAACATTAGATATGCAAAGCCATCTTGCCTTAGGGCTCAATCAAATCACTACATTATATTCTCTTCGAATCCCTGAGTTTGCTTGGTAGTCTCTTTAATAGTTTATGTATTCTATTTTCTCTATGACTGTTGTAATGGTTGTGCACTTGTCTTGTCTGGATTCAAAGTGTCCATTTTTATACTTTTAAACTTACCTATCATTGAAGACTTCTCTTTGTTTTACTTTTGGTAATAAAACTGACACTATATTGGTATTTGTTTGTATATCTAGATGATGAAGCCTTATGTGTGGCTTCAAACTTCCGATGAATCAATCCAACAAGTTGAACAAGAGATTGCGATGTTTTGTCCATTTATATGTCAAGAAATATTACAAAAAGGCAATGGAACTTCCAAGAATTGTTCAGTATGTCTTCCTCAACAAGTCAGTCCTGCAATGTTGAGCTTAATTCTTGATTACTGTCGATTTCATCAAGTACTAGGCCGCTCAAACAAGGTTCTTCAATGCTCTTATCTTGTGGATTATATTCTAGACAAGATGACCCTAGTCTGAACAAATATCACAGAATATCTCACTCGGTGATTTTCTTTTGTATAGGAACGGAAGGCTTATGATGAGAAATTCGTTAGGATAGACACAGAGAAGCTCTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAGCCATTGGTTGATCTCACCAGTCGTGCTCTTGCTCGAATAATTGAAGGGAGATCACCGGAGGAGATTCGTGATATATTTCATTTGCCTGATGATCTTACAGAGGTGTCTGGTGCTTGTGAGAACTCTGTATGCCGATTATATTTTTTTGGATTTTCAATTTCCATTTCTCACACATTCTTATAATCCAGGAAGAGAAGCTGGAGCCCTTGAGAAACATAACTGATGATCCAAGGATAAGGCTTTTGAACCGCTTGTATGCCAAGAAGAGGAAAGAGCTTAAAGAGCGTGAGAGGATAAAGGTGCTACTCGATTTTTTCAGCACTTTTTATGTATTGTTTCTGTCAAATTTAATTATCATTTGTTAATAACATTTCTGTTTCAACTATTGCCAATGCGAAATGTGAAGATCAATGTTGTCAATGGTGTATCGCACCAACGTGGCAACGTCCTTAGTTTTGTGTCAGATTGCATGGTGTCACCATGTTGAACCAACACAACAATAGCTTGACAATGTTCATTTAGGACATACTTTGTTGGAAAACAGAAACCGAACAACAAAAAAAACCATACAACAATAAAAAGAAGGTGAGTGAATATAAGGAAGCTATAAGTGCTCAGCCTTCTATATCAGAAACTTAGATATAAAAAACCCTGGAAGATTTTTATTGTGAAACTGAAATTGAATTTTAGAAATTAGGAGAAAGTAAAATCTAAAAGAGGGCAACTAACGGTAGGTTCATGGAGCTGAAACTGTTAACATTGCGGGATCTATGCATGATTGTAGACAAAATGAGATAGGATTTCTGATCTAATTGATGTTTTCGGCAACAGGACAAATTAAAAGACCTGATTCCCCCTTCAAATTTCAAGCTCTAGTTAAAAAAGAGCAAGATGAGCAATTTTATGTCATTTTACAATACCGTTCCTATTCAAAGATGCACCACGGACCATCGACAACATAGGTCTAGATGTATTGTTGTATCATTTTACATGCCCTAAATTATAAAAAAGTTTTGAAGTTGATCCCTTTCATGTTTCAGAATGTTGAGGCTGAAGAAGAGCATGTAGACGAACGTTCAGTCGATGACCTTTTGTCTTTTATTAATGGAAATGATGGAGGTATTTTGAGCATTTCAGTTCTCATCTTTGTGCACTTCTTGTTTTCATTTTGTAGATTGATTAAATTAAATGTGTAAGATATCATTCCTAATTTGTGCACTTTCTATTTAATGTTACTCCTTGGCCATAAGAAACCCTTTTTAAAAGACGAACATTACTTTCTATCTGATGTTATGAGGAGGCTCAGACAACCGCCCGCTAAAAATGATGTCATTGTAAAATTAAGAGGCTTAGTAGAAGCATTTTTAGATGATAAATTATTCACCAGTCTCAATTTTATGACAGACTAGGCAAAATAGCGCTGGCAAGGACAGTGCAAACATCTGCCCCCTTTTCTATAAGACAAACATTTCAGTTTTCTTTAATATAATATCAGATAAATTGATATAAGAAATATATTTAACATCCCTAACTTTACGATCCCTGACTGGAATAATTTTTATATAAGGTTGTACTTACATCTTGAACGAACTCTGGATTATCAGGGCCATTACCGAAGGGTTATTACCGATAAATTGTTGTGGCAAATTTGTGGGCTACTATAACTAATGTCTTCAGATCATTGAAACTAGAAAAGTAAATAAGAAAATTATTTATAAACCGGATTAAAGTTAACTATTTATAGATACAAGTTTTTATTATCGTGGTGCCAAAGTTCGTTAATGATGTGCTAGTGCCCTTATATTGTCACATCATTTGGGATAAGAAATTTGTATGATTTTTGGGATGTGTATAGCATTGCTAGTTGCATTTTAAAAATATTTGAGATTCTTTTAGGGTCAGACTTGTCTTGTATTTTTCTATATCTTCCTTTTTGACTTCCTGACTGGAGGTGAAGAATTTTGTCACAGATCCGAAGGGGATTAAAACTTCCAAGAATAAAAAGAAGAACCGAAGGAAAAAAGACCAACAGAAGAATTCTTCTTTGAAGGAATCATCTGTACCACATAAGAAGGTTGTTGTAAATGCTACTGTTTTATTTATACACTGCTAAATCATTTGGCACAATGTCAGTGATGAATGAACATAGAGTCTATTGGCCATCACTAAAAAATTAACTGTATACCGCCTTTCTTCCTTCTCTAGGTGGTAAATGGTCATAA

Protein sequence

>MS.gene066434.t1

MAVIKPEMMKPYVWLQTSDESIQQVEQEIAMFCPFICQEILQKGNGTSKNCSVCLPQQVSPAMLSLILDYCRFHQVLGRSNKERKAYDEKFVRIDTEKLCELTSAADSLQLKPLVDLTSRALARIIEGRSPEEIRDIFHLPDDLTEEEKLEPLRNITDDPRIRLLNRLYAKKRKELKERERIKNVEAEEEHVDERSVDDLLSFINGNDGGGKWS