AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06648

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06648.t1 MTR_3g092100 95.174 518 25 0 38 555 34 551 0.0 990
MS.gene06648.t1 MTR_1g007590 60.732 601 156 5 10 549 9 590 0.0 707
MS.gene06648.t1 MTR_1g007590 63.200 500 122 3 105 549 3 495 0.0 623
MS.gene06648.t1 MTR_5g065510 89.474 76 7 1 70 145 21 95 1.45e-39 139
MS.gene06648.t1 MTR_2g099185 30.000 290 168 5 179 464 254 512 1.08e-33 136
MS.gene06648.t1 MTR_2g099185 41.935 93 52 2 72 163 40 131 4.17e-12 69.3
MS.gene06648.t1 MTR_4g115090 33.505 194 109 1 349 542 459 632 4.53e-32 131
MS.gene06648.t1 MTR_2g099185 30.314 287 165 6 179 461 254 509 7.92e-32 129
MS.gene06648.t1 MTR_2g099185 41.935 93 52 2 72 163 40 131 4.74e-12 68.9
MS.gene06648.t1 MTR_2g099185 30.314 287 165 6 179 461 259 514 1.06e-31 129
MS.gene06648.t1 MTR_2g099185 42.105 95 53 2 70 163 43 136 3.12e-12 69.3
MS.gene06648.t1 MTR_2g083220 33.040 227 122 5 344 540 206 432 3.56e-29 120
MS.gene06648.t1 MTR_2g083220 38.667 150 73 7 65 197 24 171 1.78e-16 82.4
MS.gene06648.t1 MTR_4g081110 32.258 217 119 4 344 532 202 418 4.09e-29 120
MS.gene06648.t1 MTR_1g069705 40.800 125 72 1 342 464 187 311 2.35e-27 115
MS.gene06648.t1 MTR_1g069705 39.326 89 51 2 73 160 45 131 2.45e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06648.t1 AT3G49350 65.538 502 155 6 57 554 51 538 0.0 619
MS.gene06648.t1 AT5G24390 62.272 493 164 7 61 549 49 523 0.0 597
MS.gene06648.t1 AT5G53570 59.839 498 154 7 61 549 82 542 0.0 590
MS.gene06648.t1 AT5G53570 59.839 498 154 7 61 549 109 569 0.0 590
MS.gene06648.t1 AT5G41940 55.556 540 219 6 16 548 24 549 0.0 579
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 2.80e-49 181
MS.gene06648.t1 AT2G43490 30.085 472 247 15 67 464 38 500 3.49e-49 182
MS.gene06648.t1 AT2G43490 30.085 472 247 15 67 464 38 500 3.49e-49 182
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 5.57e-49 181
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 5.61e-49 181
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 5.61e-49 181
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 5.61e-49 181
MS.gene06648.t1 AT2G43490 30.043 466 243 15 73 464 48 504 5.61e-49 181
MS.gene06648.t1 AT5G52580 28.958 259 151 3 293 542 423 657 4.72e-32 131
MS.gene06648.t1 AT5G52580 28.958 259 151 3 293 542 406 640 4.75e-32 131
MS.gene06648.t1 AT5G52580 28.958 259 151 3 293 542 412 646 6.13e-32 131
MS.gene06648.t1 AT4G28550 32.489 237 131 4 342 553 189 421 1.89e-31 127
MS.gene06648.t1 AT4G28550 35.000 100 62 2 73 172 40 136 2.11e-13 72.8
MS.gene06648.t1 AT3G59570 43.443 122 68 1 344 464 387 508 8.74e-30 124
MS.gene06648.t1 AT3G59570 43.333 90 49 2 73 162 48 135 2.28e-15 79.7
MS.gene06648.t1 AT3G59570 43.443 122 68 1 344 464 387 508 9.47e-30 124
MS.gene06648.t1 AT3G59570 43.333 90 49 2 73 162 48 135 2.35e-15 79.7
MS.gene06648.t1 AT3G59570 43.443 122 68 1 344 464 387 508 1.02e-29 124
MS.gene06648.t1 AT3G59570 43.333 90 49 2 73 162 48 135 2.29e-15 79.7
MS.gene06648.t1 AT2G20440 30.380 237 136 4 342 553 73 305 4.44e-29 117
MS.gene06648.t1 AT5G54780 46.400 125 65 1 342 464 193 317 1.44e-28 118
MS.gene06648.t1 AT2G20440 30.380 237 136 4 342 553 189 421 2.40e-28 117
MS.gene06648.t1 AT2G20440 31.356 118 68 3 73 190 40 144 3.65e-14 75.1
MS.gene06648.t1 AT2G20440 30.380 237 136 4 342 553 189 421 2.40e-28 117
MS.gene06648.t1 AT2G20440 31.356 118 68 3 73 190 40 144 3.65e-14 75.1
MS.gene06648.t1 AT4G27100 40.940 149 80 3 323 464 172 319 1.06e-27 116
MS.gene06648.t1 AT4G27100 40.940 149 80 3 323 464 172 319 1.57e-27 115
MS.gene06648.t1 AT4G28550 43.443 122 67 1 342 461 189 310 6.83e-26 108
MS.gene06648.t1 AT4G28550 34.211 114 67 3 59 172 31 136 9.17e-14 73.2
MS.gene06648.t1 AT4G28550 42.975 121 67 1 342 460 189 309 1.25e-25 108
MS.gene06648.t1 AT4G28550 34.211 114 67 3 59 172 31 136 1.17e-13 72.8
MS.gene06648.t1 AT2G20440 40.650 123 71 1 342 462 189 311 1.06e-23 103
MS.gene06648.t1 AT2G20440 31.061 132 73 4 59 190 31 144 1.74e-14 75.5

Find 156 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCTGGCAGTAGCCAATTTC+AGG 0.187920 3.3:+76900975 None:intergenic
CCTTGATGTTTGGAAGCTTC+TGG 0.224318 3.3:-76900466 MS.gene06648:CDS
GATCGATGTGCCCTACTTTC+TGG 0.228898 3.3:+76901101 None:intergenic
AAAAGGCCAGGCAGAATTTC+AGG 0.242883 3.3:-76900872 MS.gene06648:CDS
GGCATCAGCGTTGCTGCTGC+TGG 0.251232 3.3:+76901382 None:intergenic
GCACTATACGACCCTGAAAT+TGG 0.254237 3.3:-76900987 MS.gene06648:CDS
TTCCCACCTGTTTAGGCATT+TGG 0.272963 3.3:-76900787 MS.gene06648:CDS
TCTGATACAACACTAATTAT+AGG 0.273095 3.3:+76900933 None:intergenic
TCATCTGAATATTCAAAATC+TGG 0.290685 3.3:+76901440 None:intergenic
TTGAACAGACTCTCTGCCTT+TGG 0.315646 3.3:-76900692 MS.gene06648:CDS
TATAACATCTCTTTCTTGTT+TGG 0.318362 3.3:+76901806 None:intergenic
TTAAGGATTCCCACCTGTTT+AGG 0.320777 3.3:-76900794 MS.gene06648:CDS
TGCTGAGGCTGTTGGCTTGA+AGG 0.329038 3.3:-76901078 MS.gene06648:CDS
CAGACATTTCCTTCTGATGA+TGG 0.342218 3.3:-76901302 MS.gene06648:CDS
CAGAAGATCACGAGGCATTC+TGG 0.343497 3.3:-76900914 MS.gene06648:CDS
GAAGTTTGGCCTTTCCTACT+TGG 0.347842 3.3:-76902242 MS.gene06648:CDS
TGGCAGGACACCTTGATGTT+TGG 0.354263 3.3:-76900476 MS.gene06648:CDS
CTCGTCGCCGTCTTCTTCTA+TGG 0.378174 3.3:-76904320 MS.gene06648:CDS
ACAGCTTGAGAGGGAGAGTA+TGG 0.383357 3.3:+76901128 None:intergenic
ATGTTATACGAACTCAAAAT+AGG 0.383420 3.3:-76901791 MS.gene06648:intron
CAATGCCAAGACAACTTCTA+AGG 0.390521 3.3:-76901267 MS.gene06648:CDS
GTTGTTGGCGTTCAAGTTAG+TGG 0.398564 3.3:+76904454 None:intergenic
GCAGCAATCAGAGCTGGTAT+AGG 0.405908 3.3:-76900648 MS.gene06648:CDS
TGAACAGACTCTCTGCCTTT+GGG 0.407409 3.3:-76900691 MS.gene06648:CDS
GCATCAGCGTTGCTGCTGCT+GGG 0.413973 3.3:+76901383 None:intergenic
ATTTCCTTCTGATGATGGTC+TGG 0.416866 3.3:-76901297 MS.gene06648:CDS
CTAGTATCAGAGCTGAAGTT+TGG 0.421208 3.3:-76902256 MS.gene06648:CDS
CCCACTGGAAAGGGATTCTC+TGG 0.421918 3.3:+76901472 None:intergenic
CAGCAATCAGAGCTGGTATA+GGG 0.423002 3.3:-76900647 MS.gene06648:CDS
GACGGCGACGAGAGCGATGC+CGG 0.425117 3.3:+76904331 None:intergenic
GCTCTGTTCCCCACTGGAAA+GGG 0.427085 3.3:+76901463 None:intergenic
GAAGGGTGACCACCAAGTTA+TGG 0.427485 3.3:+76900436 None:intergenic
CAAACTTCAGCTCTGATACT+AGG 0.427591 3.3:+76902257 None:intergenic
GAGCATCATCTCCTTCCAAC+AGG 0.427621 3.3:+76901405 None:intergenic
AAGGGTGACCACCAAGTTAT+GGG 0.433218 3.3:+76900437 None:intergenic
GCTTCTCCAAATGCCTAAAC+AGG 0.435797 3.3:+76900781 None:intergenic
CTTGGCAGCGGCGGCGCCGT+CGG 0.436178 3.3:+76904415 None:intergenic
CCCTGAAATTGGCTACTGCC+AGG 0.439699 3.3:-76900976 MS.gene06648:CDS
GCTGTTGGCTTGAAGGATTA+TGG 0.440935 3.3:-76901071 MS.gene06648:CDS
AATCTGCCTGGAGCAGAATT+AGG 0.441068 3.3:-76900623 MS.gene06648:CDS
GGCTCTGTTCCCCACTGGAA+AGG 0.446047 3.3:+76901462 None:intergenic
CGTGCTCATGAAAGTGAACT+TGG 0.464952 3.3:+76904397 None:intergenic
ATAACAGATCGCTCATACCC+TGG 0.469354 3.3:+76900958 None:intergenic
GTGCTCTTCACGACGGTGGC+CGG 0.473296 3.3:-76904350 MS.gene06648:CDS
ATCAAGCCTGAAATTCTGCC+TGG 0.473868 3.3:+76900866 None:intergenic
GAAGAACGGAGTTTCGTTGT+TGG 0.477940 3.3:+76904439 None:intergenic
CTTGCTGCATCTTCAGAACT+AGG 0.479473 3.3:+76901497 None:intergenic
ACTATCCTTAGAAGTTGTCT+TGG 0.481401 3.3:+76901262 None:intergenic
CGATCGCGGATTCTCCCGTC+GGG 0.485149 3.3:+76902414 None:intergenic
CATCGATCTGCTGAGGCTGT+TGG 0.485665 3.3:-76901086 MS.gene06648:CDS
TTGATGAGGTGGGTATTAGA+AGG 0.486537 3.3:-76900848 MS.gene06648:CDS
ACGCTGCCTAATTCTGCTCC+AGG 0.490066 3.3:+76900617 None:intergenic
CAACTTAAAGCTCCCACTGT+TGG 0.493755 3.3:+76901583 None:intergenic
TAGGCATTTGGAGAAGCTCC+AGG 0.494322 3.3:-76900775 MS.gene06648:CDS
ACGGAATGCAATGGCATGGC+AGG 0.494458 3.3:-76900492 MS.gene06648:CDS
CAGCCTCAGTGTTACAAAGA+AGG 0.497992 3.3:-76900557 MS.gene06648:CDS
ATCTGGGCTCTGTTCCCCAC+TGG 0.498167 3.3:+76901457 None:intergenic
ATCTCCTTCCAACAGGGAAA+CGG 0.498807 3.3:+76901412 None:intergenic
TGGTGGTAGTATTGTTCAGA+AGG 0.501178 3.3:-76900725 MS.gene06648:CDS
TGATCCATCCGTTTCCCTGT+TGG 0.502365 3.3:-76901420 MS.gene06648:CDS
TTTGGAGAAGCTCCAGGCCG+AGG 0.506505 3.3:-76900769 MS.gene06648:CDS
GGTGGCCACCTCTCCGACTA+CGG 0.509647 3.3:-76904375 MS.gene06648:CDS
CTGGTATAGGGAAATCTGCC+TGG 0.516875 3.3:-76900635 MS.gene06648:CDS
GTGGGTCAACACTACGAAGT+AGG 0.518405 3.3:-76901217 MS.gene06648:CDS
TCTGGATGATGCCCATAACT+TGG 0.518938 3.3:-76900448 MS.gene06648:CDS
AAGCTGTTGTTCCAGAAAGT+AGG 0.520433 3.3:-76901112 MS.gene06648:CDS
GAATTTCAGGCTTGATGAGG+TGG 0.520596 3.3:-76900859 MS.gene06648:CDS
CTGCCTTTGGGAAGTAATGT+GGG 0.522221 3.3:-76900679 MS.gene06648:CDS
CAGCATGGATGATATCCTTA+CGG 0.525092 3.3:-76900511 MS.gene06648:CDS
TTCTGGAACAACAGCTTGAG+AGG 0.528518 3.3:+76901118 None:intergenic
TCTGCCTTTGGGAAGTAATG+TGG 0.532088 3.3:-76900680 MS.gene06648:CDS
AGCTGTTGTTCCAGAAAGTA+GGG 0.534724 3.3:-76901111 MS.gene06648:CDS
TGACCCACCTTTCATTTGTG+AGG 0.535259 3.3:+76901232 None:intergenic
GACCCACCTTTCATTTGTGA+GGG 0.537428 3.3:+76901233 None:intergenic
AGCAATAAATCGTCTGTTGG+TGG 0.537984 3.3:+76900591 None:intergenic
TGGGTCAACACTACGAAGTA+GGG 0.538976 3.3:-76901216 MS.gene06648:CDS
CATCTGAATATTCAAAATCT+GGG 0.541125 3.3:+76901441 None:intergenic
GGAATTTCATTCCACGATCG+CGG 0.541952 3.3:+76902400 None:intergenic
ACGATCGCGGATTCTCCCGT+CGG 0.548417 3.3:+76902413 None:intergenic
CTCCCTCACAAATGAAAGGT+GGG 0.548448 3.3:-76901235 MS.gene06648:CDS
CCATGCTGCTATACTTCTCA+AGG 0.550937 3.3:+76900526 None:intergenic
GGAAATGTCTGAAATACCTC+GGG 0.554770 3.3:+76901314 None:intergenic
CCTGGCAGTAGCCAATTTCA+GGG 0.555580 3.3:+76900976 None:intergenic
GATTATGGTCACCTAGATGC+TGG 0.557305 3.3:-76901056 MS.gene06648:CDS
CCTGAAATTGGCTACTGCCA+GGG 0.558212 3.3:-76900975 MS.gene06648:CDS
GATCAAGCAGCAATCAGAGC+TGG 0.564321 3.3:-76900654 MS.gene06648:CDS
CGATACAGATTCCACTGACT+CGG 0.565217 3.3:-76901351 MS.gene06648:CDS
TCTCCAAATGCCTAAACAGG+TGG 0.570063 3.3:+76900784 None:intergenic
AACTGCTAAAATCCAACAGT+GGG 0.570157 3.3:-76901595 MS.gene06648:CDS
GACGGGAGAATCCGCGATCG+TGG 0.570960 3.3:-76902411 MS.gene06648:CDS
ATAGGTGAAGTCAACTATGA+AGG 0.571069 3.3:-76901554 MS.gene06648:CDS
TTCTGAGGAATCCGAGTCAG+TGG 0.572266 3.3:+76901340 None:intergenic
AAAAGCAATAAATCGTCTGT+TGG 0.573940 3.3:+76900588 None:intergenic
CAGTACGTGCCAATGCAGAA+TGG 0.574385 3.3:-76901154 MS.gene06648:CDS
CAAGTTAGTGGAAAGGAACA+TGG 0.574857 3.3:+76904466 None:intergenic
AGCTTTAAGTTGATTGACAT+AGG 0.577688 3.3:-76901572 MS.gene06648:CDS
CCATCCGTTTCCCTGTTGGA+AGG 0.578648 3.3:-76901416 MS.gene06648:CDS
GTCAGTGGAATCTGTATCGA+GGG 0.579303 3.3:+76901355 None:intergenic
CCAGAAGCTTCCAAACATCA+AGG 0.579998 3.3:+76900466 None:intergenic
CAAGTTCACTTTCATGAGCA+CGG 0.581255 3.3:-76904396 MS.gene06648:CDS
GTGAAGAGCACCGCCGTAGT+CGG 0.581358 3.3:+76904362 None:intergenic
GAAAGTGAACTTGGCAGCGG+CGG 0.581532 3.3:+76904406 None:intergenic
TCTCCCTCACAAATGAAAGG+TGG 0.583366 3.3:-76901236 MS.gene06648:CDS
AAATACCTCGGGACTTTCTG+AGG 0.586290 3.3:+76901325 None:intergenic
TGGCGTTCAAGTTAGTGGAA+AGG 0.588150 3.3:+76904459 None:intergenic
GTATGGCATCCATTCTGCAT+TGG 0.588420 3.3:+76901145 None:intergenic
TCTTCTCCCTCACAAATGAA+AGG 0.589731 3.3:-76901239 MS.gene06648:CDS
CCAGAGAATCCCTTTCCAGT+GGG 0.590141 3.3:-76901472 MS.gene06648:CDS
AGAATGCTTACACTCCAAGT+AGG 0.593658 3.3:+76902228 None:intergenic
GCAGTTGTCGGCATTGTCTG+CGG 0.593769 3.3:+76901612 None:intergenic
ATCGCGGATTCTCCCGTCGG+GGG 0.595937 3.3:+76902416 None:intergenic
CACCGCCGTAGTCGGAGAGG+TGG 0.596660 3.3:+76904370 None:intergenic
GCAGAATTTCAGGCTTGATG+AGG 0.597261 3.3:-76900862 MS.gene06648:CDS
CCATGCCATTGCATTCCGTA+AGG 0.597871 3.3:+76900496 None:intergenic
GGATGATGCCCATAACTTGG+TGG 0.598717 3.3:-76900445 MS.gene06648:CDS
AGGAAATGTCTGAAATACCT+CGG 0.600009 3.3:+76901313 None:intergenic
GCGGCGCCGTCGGAGAAGAA+CGG 0.603184 3.3:+76904425 None:intergenic
CATGAAAGTGAACTTGGCAG+CGG 0.603304 3.3:+76904403 None:intergenic
CTCCAAATGCCTAAACAGGT+GGG 0.604678 3.3:+76900785 None:intergenic
GAAGTCAACTATGAAGGAGA+TGG 0.604996 3.3:-76901548 MS.gene06648:CDS
GCTTACACTCCAAGTAGGAA+AGG 0.606813 3.3:+76902233 None:intergenic
AATTTCAGGCTTGATGAGGT+GGG 0.609387 3.3:-76900858 MS.gene06648:CDS
TCTGGAACAACAGCTTGAGA+GGG 0.610648 3.3:+76901119 None:intergenic
GTGTCCTTTCTCCTCAACAA+TGG 0.613177 3.3:-76902452 MS.gene06648:CDS
TCTTCCAGACCATCATCAGA+AGG 0.618152 3.3:+76901293 None:intergenic
GCCAGAGAATCCCTTTCCAG+TGG 0.621665 3.3:-76901473 MS.gene06648:CDS
GGTGGTAGTATTGTTCAGAA+GGG 0.622086 3.3:-76900724 MS.gene06648:CDS
AAGACTTTGCCACATGGCAA+CGG 0.623278 3.3:-76901193 MS.gene06648:CDS
GGAATCTGTATCGAGGGCAG+AGG 0.624799 3.3:+76901361 None:intergenic
CCTTCCAACAGGGAAACGGA+TGG 0.626826 3.3:+76901416 None:intergenic
GTAGGGAAGACTTTGCCACA+TGG 0.627542 3.3:-76901199 MS.gene06648:CDS
AGCATCATCTCCTTCCAACA+GGG 0.628935 3.3:+76901406 None:intergenic
CCTTACGGAATGCAATGGCA+TGG 0.633745 3.3:-76900496 MS.gene06648:CDS
GATATCCTTACGGAATGCAA+TGG 0.638476 3.3:-76900501 MS.gene06648:CDS
CCTTGAGAAGTATAGCAGCA+TGG 0.641797 3.3:-76900526 MS.gene06648:CDS
GGCGGTGCTCTTCACGACGG+TGG 0.642433 3.3:-76904354 MS.gene06648:CDS
TCTTCTTCTATGGTGCAAGT+AGG 0.644901 3.3:-76904310 MS.gene06648:intron
TAGGGCACATCGATCTGCTG+AGG 0.650584 3.3:-76901093 MS.gene06648:CDS
GAAACTCCGTTCTTCTCCGA+CGG 0.653603 3.3:-76904431 MS.gene06648:CDS
GAGCACCGCCGTAGTCGGAG+AGG 0.658995 3.3:+76904367 None:intergenic
CTGCCCACATTACTTCCCAA+AGG 0.659441 3.3:+76900676 None:intergenic
GATCGCGGATTCTCCCGTCG+GGG 0.667812 3.3:+76902415 None:intergenic
AGTCAGTGGAATCTGTATCG+AGG 0.671427 3.3:+76901354 None:intergenic
ACTTGCACCATAGAAGAAGA+CGG 0.674879 3.3:+76904313 None:intergenic
TTTCCTTCTTTGTAACACTG+AGG 0.675398 3.3:+76900554 None:intergenic
TCGGATGATCCGTTGCCATG+TGG 0.681927 3.3:+76901184 None:intergenic
GGCCACCTCTCCGACTACGG+CGG 0.689019 3.3:-76904372 MS.gene06648:CDS
TGGCACGTACTGCATCAAGT+CGG 0.689956 3.3:+76901165 None:intergenic
CAGAGAATCCCTTTCCAGTG+GGG 0.692115 3.3:-76901471 MS.gene06648:CDS
TACGGCGGTGCTCTTCACGA+CGG 0.695103 3.3:-76904357 MS.gene06648:CDS
CAACTGCTAAAATCCAACAG+TGG 0.696442 3.3:-76901596 MS.gene06648:CDS
TGTTGTATCAGAAGATCACG+AGG 0.721800 3.3:-76900922 MS.gene06648:CDS
GGATTCCTCAGAAAGTCCCG+AGG 0.734543 3.3:-76901330 MS.gene06648:CDS
TTCCTGAAAAGAGTTCGCAG+CGG 0.769164 3.3:-76902381 MS.gene06648:CDS
GTTCACTTTCATGAGCACGG+TGG 0.772842 3.3:-76904393 MS.gene06648:CDS
GAGGTCGTCTTAAATCACCG+TGG 0.833062 3.3:-76902494 MS.gene06648:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATATATATTTTTTTTT+TGG - chr3.3:76902155-76902174 MS.gene06648:intron 0.0%
!!! TATATATATATTTTTTTTTT+GGG - chr3.3:76902156-76902175 MS.gene06648:intron 0.0%
!! AAAATAGAAAGAAAAAAAAT+TGG + chr3.3:76902972-76902991 None:intergenic 10.0%
!!! AATGAAATAATATATTTTTC+TGG - chr3.3:76902234-76902253 MS.gene06648:intron 10.0%
!!! ATGAAATAATATATTTTTCT+GGG - chr3.3:76902235-76902254 MS.gene06648:intron 10.0%
!! AGAAAATATAATAAATGACA+AGG + chr3.3:76902931-76902950 None:intergenic 15.0%
!! CAAGTTATATAAAAATCAAA+AGG + chr3.3:76901296-76901315 None:intergenic 15.0%
!! CATTTATTTAGACATTTATA+TGG - chr3.3:76902992-76903011 MS.gene06648:intron 15.0%
!! CTAAATGATGTTTATTTATT+TGG - chr3.3:76902674-76902693 MS.gene06648:intron 15.0%
!! TATTACAAGCAAAAATTTAT+GGG + chr3.3:76901715-76901734 None:intergenic 15.0%
!!! AAAAAAATTAACTTGTTATG+AGG + chr3.3:76901754-76901773 None:intergenic 15.0%
!!! AAAAAATTAACTTGTTATGA+GGG + chr3.3:76901753-76901772 None:intergenic 15.0%
!!! AAGTTTTGATTTTTATAAGA+AGG - chr3.3:76901124-76901143 MS.gene06648:CDS 15.0%
!!! AGTTTTGATTTTTATAAGAA+GGG - chr3.3:76901125-76901144 MS.gene06648:CDS 15.0%
!!! ATTTAATCATTTTAGCATTA+TGG - chr3.3:76901947-76901966 MS.gene06648:intron 15.0%
!!! TACATAAAAATATTTTAGTG+TGG - chr3.3:76901984-76902003 MS.gene06648:intron 15.0%
!! AAAATCCAAAACAAGATAAA+AGG + chr3.3:76901269-76901288 None:intergenic 20.0%
!! AAACATCATTTATGACATTT+AGG + chr3.3:76902275-76902294 None:intergenic 20.0%
!! ATAGAAAGAAAAAAAATTGG+AGG + chr3.3:76902969-76902988 None:intergenic 20.0%
!! ATGAAAGATCAAATACTAAT+GGG + chr3.3:76902782-76902801 None:intergenic 20.0%
!! ATGATAAATTACCATGTTTA+GGG - chr3.3:76901339-76901358 MS.gene06648:CDS 20.0%
!! CTATTACAAGCAAAAATTTA+TGG + chr3.3:76901716-76901735 None:intergenic 20.0%
!! TACATATGAAATCAAAATAC+TGG + chr3.3:76901866-76901885 None:intergenic 20.0%
!! TATGAAAGATCAAATACTAA+TGG + chr3.3:76902783-76902802 None:intergenic 20.0%
!! TATGATAAATTACCATGTTT+AGG - chr3.3:76901338-76901357 MS.gene06648:CDS 20.0%
!! TGCAAAAATAATCAAGTTTA+AGG - chr3.3:76904054-76904073 MS.gene06648:intron 20.0%
!! TTAAATAGAGTAAAGAAAGA+GGG + chr3.3:76901685-76901704 None:intergenic 20.0%
!! TTTAAATAGAGTAAAGAAAG+AGG + chr3.3:76901686-76901705 None:intergenic 20.0%
!! TTTCATATGTACATTTATAG+AGG - chr3.3:76901875-76901894 MS.gene06648:intron 20.0%
!!! AATCAGCATATTTCTAATTT+TGG - chr3.3:76901013-76901032 MS.gene06648:CDS 20.0%
!!! AATTTTTGCTTGTAATAGTT+TGG - chr3.3:76901718-76901737 MS.gene06648:intron 20.0%
!!! ATCAGCATATTTCTAATTTT+GGG - chr3.3:76901014-76901033 MS.gene06648:CDS 20.0%
!!! ATTCACTTTGTTTACAAAAT+CGG + chr3.3:76900679-76900698 None:intergenic 20.0%
!!! GTTTTGATTTTTATAAGAAG+GGG - chr3.3:76901126-76901145 MS.gene06648:CDS 20.0%
!!! TAAGAAAGAAATGTTTTTTC+TGG - chr3.3:76901506-76901525 MS.gene06648:CDS 20.0%
!!! TATCTTCATTTTATCATGAA+GGG + chr3.3:76904449-76904468 None:intergenic 20.0%
!!! TTAGTATTCTAGATATTTTC+TGG - chr3.3:76901607-76901626 MS.gene06648:CDS 20.0%
!!! TTTTGTTGGATTTATGAAAA+AGG - chr3.3:76903976-76903995 MS.gene06648:intron 20.0%
! AAAAGGACTAGATAATTAGA+GGG - chr3.3:76901160-76901179 MS.gene06648:CDS 25.0%
! AAACTGAACAAAAGGATAAA+GGG + chr3.3:76903177-76903196 None:intergenic 25.0%
! AGTATGTTAAACTGAACAAA+AGG + chr3.3:76903185-76903204 None:intergenic 25.0%
! ATCAAGCATTACAATTCTTT+AGG - chr3.3:76901582-76901601 MS.gene06648:CDS 25.0%
! ATGTTATACGAACTCAAAAT+AGG - chr3.3:76903074-76903093 MS.gene06648:intron 25.0%
! CAAAATACAAAGCTAGAAAA+GGG + chr3.3:76901413-76901432 None:intergenic 25.0%
! CATCTGAATATTCAAAATCT+GGG + chr3.3:76903427-76903446 None:intergenic 25.0%
! CTGTTTAGATTTCAATTTAG+TGG - chr3.3:76902526-76902545 MS.gene06648:intron 25.0%
! CTTGATTCATCATATTTCTT+TGG - chr3.3:76903126-76903145 MS.gene06648:intron 25.0%
! GTAAACAAAGTGAATATAGA+AGG - chr3.3:76900684-76900703 MS.gene06648:CDS 25.0%
! TAAACTGAACAAAAGGATAA+AGG + chr3.3:76903178-76903197 None:intergenic 25.0%
! TATAACATCTCTTTCTTGTT+TGG + chr3.3:76903062-76903081 None:intergenic 25.0%
! TATATTGTCTATGTAAGTTG+AGG - chr3.3:76901906-76901925 MS.gene06648:intron 25.0%
! TATCATTTCATTACCGTTAA+TGG + chr3.3:76902013-76902032 None:intergenic 25.0%
! TCATCTGAATATTCAAAATC+TGG + chr3.3:76903428-76903447 None:intergenic 25.0%
! TCTGATACAACACTAATTAT+AGG + chr3.3:76903935-76903954 None:intergenic 25.0%
! TTTAAGTGAGTATGTTCATT+TGG - chr3.3:76901478-76901497 MS.gene06648:CDS 25.0%
!! AATTACATTTTCCCTAAACA+TGG + chr3.3:76901353-76901372 None:intergenic 25.0%
!! CTATCTTCATTTTATCATGA+AGG + chr3.3:76904450-76904469 None:intergenic 25.0%
!! GCTTGAATGTAAATAAGTTT+TGG + chr3.3:76902315-76902334 None:intergenic 25.0%
!!! TCAGCATATTTCTAATTTTG+GGG - chr3.3:76901015-76901034 MS.gene06648:CDS 25.0%
!!! TCTCTATTTTGGTTTATTTG+CGG - chr3.3:76901190-76901209 MS.gene06648:CDS 25.0%
!!! TTGGTGTTTAACTTGATTTA+AGG - chr3.3:76901543-76901562 MS.gene06648:CDS 25.0%
!!! TTTATTTATTTGGTGCATCT+AGG - chr3.3:76902684-76902703 MS.gene06648:intron 25.0%
!!! TTTTTCAAAATTCAGTGTGA+TGG - chr3.3:76902826-76902845 MS.gene06648:intron 25.0%
AAAAATGAAGTGAGAGAAAG+AGG + chr3.3:76900905-76900924 None:intergenic 30.0%
AAAAGCAATAAATCGTCTGT+TGG + chr3.3:76904280-76904299 None:intergenic 30.0%
AATCAAAATACTGGTGAGTT+TGG + chr3.3:76901857-76901876 None:intergenic 30.0%
ACAATCACATTGGAAAAAAG+TGG + chr3.3:76902100-76902119 None:intergenic 30.0%
ACCAAGTATATCTATTTCAC+TGG - chr3.3:76902190-76902209 MS.gene06648:intron 30.0%
ATATCGAAAAATTCGAGATC+TGG + chr3.3:76900961-76900980 None:intergenic 30.0%
ATTCTTTGTGACAATTTCAG+AGG - chr3.3:76902352-76902371 MS.gene06648:intron 30.0%
GAAAAGGACTAGATAATTAG+AGG - chr3.3:76901159-76901178 MS.gene06648:CDS 30.0%
GAAATATGATGAATCAAGCA+TGG + chr3.3:76903124-76903143 None:intergenic 30.0%
GCAAAATACAAAGCTAGAAA+AGG + chr3.3:76901414-76901433 None:intergenic 30.0%
TCCAGTGAAATAGATATACT+TGG + chr3.3:76902194-76902213 None:intergenic 30.0%
TCTGGACAAAATCAAATCTT+TGG - chr3.3:76901524-76901543 MS.gene06648:CDS 30.0%
TGGCTTATGAAAAGCTTATA+TGG + chr3.3:76901832-76901851 None:intergenic 30.0%
TGTCAAGTGCTTATTTATGT+CGG - chr3.3:76901797-76901816 MS.gene06648:CDS 30.0%
TTTAGTGTGGAATCCATTAA+CGG - chr3.3:76901997-76902016 MS.gene06648:intron 30.0%
! AAAGGACACGTTTTCTTTTT+CGG + chr3.3:76902402-76902421 None:intergenic 30.0%
! AATTTTTCATGCTGCTAGAT+TGG - chr3.3:76903835-76903854 MS.gene06648:intron 30.0%
! CTTTGTTTACAAAATCGGAA+TGG + chr3.3:76900674-76900693 None:intergenic 30.0%
! GAATTGTTACTTCTTCTAAG+AGG + chr3.3:76900728-76900747 None:intergenic 30.0%
! GATTTCAATTTAGTGGCTTT+TGG - chr3.3:76902533-76902552 MS.gene06648:intron 30.0%
! TCGTTCATTTGAGGAAATTT+TGG + chr3.3:76900587-76900606 None:intergenic 30.0%
! TTTTATAAGAAGGGGAAGAA+GGG - chr3.3:76901134-76901153 MS.gene06648:CDS 30.0%
! TTTTTATAAGAAGGGGAAGA+AGG - chr3.3:76901133-76901152 MS.gene06648:CDS 30.0%
!! AAATTAACTTGTTATGAGGG+AGG + chr3.3:76901750-76901769 None:intergenic 30.0%
!! AAGCTCCTTTTATCTTGTTT+TGG - chr3.3:76901261-76901280 MS.gene06648:CDS 30.0%
!! AATTAACTTGTTATGAGGGA+GGG + chr3.3:76901749-76901768 None:intergenic 30.0%
!! AGCTTTAAGTTGATTGACAT+AGG - chr3.3:76903293-76903312 MS.gene06648:intron 30.0%
!!! GTGAGTTTTATTCAAGATTC+TGG - chr3.3:76903341-76903360 MS.gene06648:intron 30.0%
AAATACTGGTGAGTTTGGAT+TGG + chr3.3:76901852-76901871 None:intergenic 35.0%
AACTGCTAAAATCCAACAGT+GGG - chr3.3:76903270-76903289 MS.gene06648:intron 35.0%
ACTATCCTTAGAAGTTGTCT+TGG + chr3.3:76903606-76903625 None:intergenic 35.0%
ACTGACACTGATAACAAGAT+CGG + chr3.3:76900986-76901005 None:intergenic 35.0%
ATAGATCTTCCTTCTAGCAT+AGG + chr3.3:76901446-76901465 None:intergenic 35.0%
ATAGGTGAAGTCAACTATGA+AGG - chr3.3:76903311-76903330 MS.gene06648:intron 35.0%
GTAAACGAAAAAGCAATCCT+CGG + chr3.3:76904116-76904135 None:intergenic 35.0%
GTGATGATTGTGATCTTGAT+TGG - chr3.3:76901378-76901397 MS.gene06648:CDS 35.0%
TCTGCTTCATGTTATGCATT+AGG - chr3.3:76902891-76902910 MS.gene06648:intron 35.0%
TGATTGTAGAAAGCCACAAT+TGG - chr3.3:76902113-76902132 MS.gene06648:intron 35.0%
TTAGATCTTCCTATGCTAGA+AGG - chr3.3:76901434-76901453 MS.gene06648:CDS 35.0%
TTGGATTTATGAAAAAGGCC+AGG - chr3.3:76903981-76904000 MS.gene06648:intron 35.0%
TTTCCTTCTTTGTAACACTG+AGG + chr3.3:76904314-76904333 None:intergenic 35.0%
! AAAGAGTTTGAGAGAGCATA+TGG + chr3.3:76901778-76901797 None:intergenic 35.0%
! AACAAGCTTTTCCATTGTTG+AGG + chr3.3:76902427-76902446 None:intergenic 35.0%
! ACAAAGCTAGAAAAGGGTTT+TGG + chr3.3:76901407-76901426 None:intergenic 35.0%
! AGGAAATGTCTGAAATACCT+CGG + chr3.3:76903555-76903574 None:intergenic 35.0%
! AGGGAGATAGATCTCTATTT+TGG - chr3.3:76901179-76901198 MS.gene06648:CDS 35.0%
! CATAGACAACTTGATTTGAC+AGG + chr3.3:76901322-76901341 None:intergenic 35.0%
! GAATTCGATGATGATGAAGA+AGG + chr3.3:76900779-76900798 None:intergenic 35.0%
! GTGTAGGAATGGTTAATTTG+TGG - chr3.3:76901068-76901087 MS.gene06648:CDS 35.0%
! TTTTCCATTGTTGAGGAGAA+AGG + chr3.3:76902420-76902439 None:intergenic 35.0%
!! TGTTGGATTTTAGCAGTTGT+CGG + chr3.3:76903268-76903287 None:intergenic 35.0%
!!! AGGATTGCTTTTTCGTTTAC+AGG - chr3.3:76904116-76904135 MS.gene06648:intron 35.0%
!!! TTGCTTTTTCGTTTACAGGA+TGG - chr3.3:76904120-76904139 MS.gene06648:intron 35.0%
AAGAAAAACTCACCGATCAG+AGG + chr3.3:76900876-76900895 None:intergenic 40.0%
AAGCTGTTGTTCCAGAAAGT+AGG - chr3.3:76903753-76903772 MS.gene06648:intron 40.0%
AATTTCAGGCTTGATGAGGT+GGG - chr3.3:76904007-76904026 MS.gene06648:intron 40.0%
ACTTGCACCATAGAAGAAGA+CGG + chr3.3:76900555-76900574 None:intergenic 40.0%
AGAATGCTTACACTCCAAGT+AGG + chr3.3:76902640-76902659 None:intergenic 40.0%
AGCAATAAATCGTCTGTTGG+TGG + chr3.3:76904277-76904296 None:intergenic 40.0%
AGCTGTTGTTCCAGAAAGTA+GGG - chr3.3:76903754-76903773 MS.gene06648:intron 40.0%
ATGCTATGAATGTCTGATGC+AGG - chr3.3:76902577-76902596 MS.gene06648:intron 40.0%
CAACTGCTAAAATCCAACAG+TGG - chr3.3:76903269-76903288 MS.gene06648:intron 40.0%
CAAGTTCACTTTCATGAGCA+CGG - chr3.3:76900469-76900488 MS.gene06648:CDS 40.0%
CAATGCCAAGACAACTTCTA+AGG - chr3.3:76903598-76903617 MS.gene06648:intron 40.0%
CAGACATTTCCTTCTGATGA+TGG - chr3.3:76903563-76903582 MS.gene06648:intron 40.0%
CAGAGTGAAGAATTGAGCTA+GGG + chr3.3:76900626-76900645 None:intergenic 40.0%
CAGCATGGATGATATCCTTA+CGG - chr3.3:76904354-76904373 MS.gene06648:CDS 40.0%
CATCATCATCGAATTCATCG+TGG - chr3.3:76900783-76900802 MS.gene06648:CDS 40.0%
CGAATAAAACCGAACGCAAA+TGG + chr3.3:76900811-76900830 None:intergenic 40.0%
CTAGTATCAGAGCTGAAGTT+TGG - chr3.3:76902609-76902628 MS.gene06648:intron 40.0%
GAAAAATTCTGCCAGCATCT+AGG + chr3.3:76903823-76903842 None:intergenic 40.0%
GAAGTCAACTATGAAGGAGA+TGG - chr3.3:76903317-76903336 MS.gene06648:intron 40.0%
GAGTAAAGAAAGAGGGCAAA+AGG + chr3.3:76901678-76901697 None:intergenic 40.0%
GATATCCTTACGGAATGCAA+TGG - chr3.3:76904364-76904383 MS.gene06648:CDS 40.0%
GATTGCGATTCGTTCATTTG+AGG + chr3.3:76900596-76900615 None:intergenic 40.0%
GCTCAATGTATATGCAATGC+CGG + chr3.3:76902745-76902764 None:intergenic 40.0%
GGTGGTAGTATTGTTCAGAA+GGG - chr3.3:76904141-76904160 MS.gene06648:intron 40.0%
GTGGCTTTCTACAATCACAT+TGG + chr3.3:76902110-76902129 None:intergenic 40.0%
TCAGAGTGAAGAATTGAGCT+AGG + chr3.3:76900627-76900646 None:intergenic 40.0%
TCTTCTCCCTCACAAATGAA+AGG - chr3.3:76903626-76903645 MS.gene06648:intron 40.0%
TCTTCTTCTATGGTGCAAGT+AGG - chr3.3:76900555-76900574 MS.gene06648:CDS 40.0%
TGATGTGTCACAAGTCTTCA+AGG - chr3.3:76901641-76901660 MS.gene06648:intron 40.0%
TGCTATGAATGTCTGATGCA+GGG - chr3.3:76902578-76902597 MS.gene06648:intron 40.0%
TGGTGGTAGTATTGTTCAGA+AGG - chr3.3:76904140-76904159 MS.gene06648:intron 40.0%
TGTTGTATCAGAAGATCACG+AGG - chr3.3:76903943-76903962 MS.gene06648:intron 40.0%
TTAAGGATTCCCACCTGTTT+AGG - chr3.3:76904071-76904090 MS.gene06648:intron 40.0%
TTGATGAGGTGGGTATTAGA+AGG - chr3.3:76904017-76904036 MS.gene06648:intron 40.0%
! CAAACTTCAGCTCTGATACT+AGG + chr3.3:76902611-76902630 None:intergenic 40.0%
! GGAAATGTCTGAAATACCTC+GGG + chr3.3:76903554-76903573 None:intergenic 40.0%
! TAGAAAGCCACAATTGGCTT+GGG - chr3.3:76902119-76902138 MS.gene06648:intron 40.0%
! TTGTTCTGAGTGTGTAGGAA+TGG - chr3.3:76901057-76901076 MS.gene06648:CDS 40.0%
!! ACAAACACGTCTTCTAAAGC+CGG - chr3.3:76902723-76902742 MS.gene06648:intron 40.0%
!! ATTTCCTTCTGATGATGGTC+TGG - chr3.3:76903568-76903587 MS.gene06648:intron 40.0%
!! CTTTTTCGTTTACAGGATGG+TGG - chr3.3:76904123-76904142 MS.gene06648:intron 40.0%
!!! TAAGTTTTGGAACAGAGAGC+AGG + chr3.3:76902302-76902321 None:intergenic 40.0%
AAAAGGCCAGGCAGAATTTC+AGG - chr3.3:76903993-76904012 MS.gene06648:intron 45.0%
AAATACCTCGGGACTTTCTG+AGG + chr3.3:76903543-76903562 None:intergenic 45.0%
AAGACTTTGCCACATGGCAA+CGG - chr3.3:76903672-76903691 MS.gene06648:intron 45.0%
AAGGGGAAGAAGGGTTGAAA+AGG - chr3.3:76901143-76901162 MS.gene06648:CDS 45.0%
AAGGGTGACCACCAAGTTAT+GGG + chr3.3:76904431-76904450 None:intergenic 45.0%
AATCTGCCTGGAGCAGAATT+AGG - chr3.3:76904242-76904261 MS.gene06648:intron 45.0%
AGCATCATCTCCTTCCAACA+GGG + chr3.3:76903462-76903481 None:intergenic 45.0%
AGTCAGTGGAATCTGTATCG+AGG + chr3.3:76903514-76903533 None:intergenic 45.0%
ATAACAGATCGCTCATACCC+TGG + chr3.3:76903910-76903929 None:intergenic 45.0%
ATCAAGCCTGAAATTCTGCC+TGG + chr3.3:76904002-76904021 None:intergenic 45.0%
ATCGTGGATCCATTTGCGTT+CGG - chr3.3:76900799-76900818 MS.gene06648:CDS 45.0%
ATCTCCTTCCAACAGGGAAA+CGG + chr3.3:76903456-76903475 None:intergenic 45.0%
CAACTTAAAGCTCCCACTGT+TGG + chr3.3:76903285-76903304 None:intergenic 45.0%
CAGCAATCAGAGCTGGTATA+GGG - chr3.3:76904218-76904237 MS.gene06648:intron 45.0%
CAGCCTCAGTGTTACAAAGA+AGG - chr3.3:76904308-76904327 MS.gene06648:intron 45.0%
CATGAAAGTGAACTTGGCAG+CGG + chr3.3:76900465-76900484 None:intergenic 45.0%
CCATGCTGCTATACTTCTCA+AGG + chr3.3:76904342-76904361 None:intergenic 45.0%
CGTGCTCATGAAAGTGAACT+TGG + chr3.3:76900471-76900490 None:intergenic 45.0%
CTCCAAATGCCTAAACAGGT+GGG + chr3.3:76904083-76904102 None:intergenic 45.0%
CTCCCTCACAAATGAAAGGT+GGG - chr3.3:76903630-76903649 MS.gene06648:intron 45.0%
CTTCCTGTTCATCCTCTGAT+CGG - chr3.3:76900861-76900880 MS.gene06648:CDS 45.0%
CTTGCTGCATCTTCAGAACT+AGG + chr3.3:76903371-76903390 None:intergenic 45.0%
GAAGAACGGAGTTTCGTTGT+TGG + chr3.3:76900429-76900448 None:intergenic 45.0%
GAATTTCAGGCTTGATGAGG+TGG - chr3.3:76904006-76904025 MS.gene06648:intron 45.0%
GACCCACCTTTCATTTGTGA+GGG + chr3.3:76903635-76903654 None:intergenic 45.0%
GATTATGGTCACCTAGATGC+TGG - chr3.3:76903809-76903828 MS.gene06648:intron 45.0%
GCACTATACGACCCTGAAAT+TGG - chr3.3:76903878-76903897 MS.gene06648:intron 45.0%
GCAGAATTTCAGGCTTGATG+AGG - chr3.3:76904003-76904022 MS.gene06648:intron 45.0%
GCTTACACTCCAAGTAGGAA+AGG + chr3.3:76902635-76902654 None:intergenic 45.0%
GCTTCTCCAAATGCCTAAAC+AGG + chr3.3:76904087-76904106 None:intergenic 45.0%
GGAATTTCATTCCACGATCG+CGG + chr3.3:76902468-76902487 None:intergenic 45.0%
GTAGAAAGCCACAATTGGCT+TGG - chr3.3:76902118-76902137 MS.gene06648:intron 45.0%
GTATGGCATCCATTCTGCAT+TGG + chr3.3:76903723-76903742 None:intergenic 45.0%
GTCAGTGGAATCTGTATCGA+GGG + chr3.3:76903513-76903532 None:intergenic 45.0%
GTGTCCTTTCTCCTCAACAA+TGG - chr3.3:76902413-76902432 MS.gene06648:CDS 45.0%
TCTCCAAATGCCTAAACAGG+TGG + chr3.3:76904084-76904103 None:intergenic 45.0%
TCTCCCTCACAAATGAAAGG+TGG - chr3.3:76903629-76903648 MS.gene06648:intron 45.0%
TCTGGATGATGCCCATAACT+TGG - chr3.3:76904417-76904436 MS.gene06648:CDS 45.0%
TCTTCCAGACCATCATCAGA+AGG + chr3.3:76903575-76903594 None:intergenic 45.0%
TGAACAGACTCTCTGCCTTT+GGG - chr3.3:76904174-76904193 MS.gene06648:intron 45.0%
TGACCCACCTTTCATTTGTG+AGG + chr3.3:76903636-76903655 None:intergenic 45.0%
TGGGTCAACACTACGAAGTA+GGG - chr3.3:76903649-76903668 MS.gene06648:intron 45.0%
TTCCCACCTGTTTAGGCATT+TGG - chr3.3:76904078-76904097 MS.gene06648:intron 45.0%
TTCCTGAAAAGAGTTCGCAG+CGG - chr3.3:76902484-76902503 MS.gene06648:CDS 45.0%
TTGAACAGACTCTCTGCCTT+TGG - chr3.3:76904173-76904192 MS.gene06648:intron 45.0%
! CCTTGAGAAGTATAGCAGCA+TGG - chr3.3:76904339-76904358 MS.gene06648:CDS 45.0%
! CGATACAGATTCCACTGACT+CGG - chr3.3:76903514-76903533 MS.gene06648:intron 45.0%
! CTGCCTTTGGGAAGTAATGT+GGG - chr3.3:76904186-76904205 MS.gene06648:intron 45.0%
! GAAGTTTGGCCTTTCCTACT+TGG - chr3.3:76902623-76902642 MS.gene06648:intron 45.0%
! GTGTGTTGTTCTGAGTGTGT+AGG - chr3.3:76901052-76901071 MS.gene06648:CDS 45.0%
! GTTGTTGGCGTTCAAGTTAG+TGG + chr3.3:76900414-76900433 None:intergenic 45.0%
! TCTGCCTTTGGGAAGTAATG+TGG - chr3.3:76904185-76904204 MS.gene06648:intron 45.0%
! TCTGGAACAACAGCTTGAGA+GGG + chr3.3:76903749-76903768 None:intergenic 45.0%
! TGGCGTTCAAGTTAGTGGAA+AGG + chr3.3:76900409-76900428 None:intergenic 45.0%
! TTTGGTGCATCTAGGATGCA+TGG - chr3.3:76902692-76902711 MS.gene06648:intron 45.0%
!! GAGGCATTCTGGTGTTTTGT+TGG - chr3.3:76903962-76903981 MS.gene06648:intron 45.0%
!! GCTGTTGGCTTGAAGGATTA+TGG - chr3.3:76903794-76903813 MS.gene06648:intron 45.0%
!! TTCTGGAACAACAGCTTGAG+AGG + chr3.3:76903750-76903769 None:intergenic 45.0%
!!! TTTCTTTTTCGGCGTGACCA+CGG + chr3.3:76902391-76902410 None:intergenic 45.0%
ACACTTGCCCAAGCCAATTG+TGG + chr3.3:76902129-76902148 None:intergenic 50.0%
ACAGCTTGAGAGGGAGAGTA+TGG + chr3.3:76903740-76903759 None:intergenic 50.0%
CAGAGAATCCCTTTCCAGTG+GGG - chr3.3:76903394-76903413 MS.gene06648:intron 50.0%
CAGTACGTGCCAATGCAGAA+TGG - chr3.3:76903711-76903730 MS.gene06648:intron 50.0%
CCAGAGAATCCCTTTCCAGT+GGG - chr3.3:76903393-76903412 MS.gene06648:intron 50.0%
CCATGCCATTGCATTCCGTA+AGG + chr3.3:76904372-76904391 None:intergenic 50.0%
CCTGAAATTGGCTACTGCCA+GGG - chr3.3:76903890-76903909 MS.gene06648:intron 50.0%
CCTGGCAGTAGCCAATTTCA+GGG + chr3.3:76903892-76903911 None:intergenic 50.0%
CCTTACGGAATGCAATGGCA+TGG - chr3.3:76904369-76904388 MS.gene06648:CDS 50.0%
CTGCCCACATTACTTCCCAA+AGG + chr3.3:76904192-76904211 None:intergenic 50.0%
CTGGTATAGGGAAATCTGCC+TGG - chr3.3:76904230-76904249 MS.gene06648:intron 50.0%
GAAACTCCGTTCTTCTCCGA+CGG - chr3.3:76900434-76900453 MS.gene06648:CDS 50.0%
GAAGGGTGACCACCAAGTTA+TGG + chr3.3:76904432-76904451 None:intergenic 50.0%
GAGCATCATCTCCTTCCAAC+AGG + chr3.3:76903463-76903482 None:intergenic 50.0%
GAGGTCGTCTTAAATCACCG+TGG - chr3.3:76902371-76902390 MS.gene06648:intron 50.0%
GATCAAGCAGCAATCAGAGC+TGG - chr3.3:76904211-76904230 MS.gene06648:intron 50.0%
GATCGATGTGCCCTACTTTC+TGG + chr3.3:76903767-76903786 None:intergenic 50.0%
GCAGCAATCAGAGCTGGTAT+AGG - chr3.3:76904217-76904236 MS.gene06648:intron 50.0%
GGATGATGCCCATAACTTGG+TGG - chr3.3:76904420-76904439 MS.gene06648:CDS 50.0%
GTAGGGAAGACTTTGCCACA+TGG - chr3.3:76903666-76903685 MS.gene06648:intron 50.0%
GTGGGTCAACACTACGAAGT+AGG - chr3.3:76903648-76903667 MS.gene06648:intron 50.0%
GTTCACTTTCATGAGCACGG+TGG - chr3.3:76900472-76900491 MS.gene06648:CDS 50.0%
TAGGCATTTGGAGAAGCTCC+AGG - chr3.3:76904090-76904109 MS.gene06648:intron 50.0%
TCACCGATCAGAGGATGAAC+AGG + chr3.3:76900867-76900886 None:intergenic 50.0%
TCAGAGGATGAACAGGAAGC+TGG + chr3.3:76900860-76900879 None:intergenic 50.0%
TGATCCATCCGTTTCCCTGT+TGG - chr3.3:76903445-76903464 MS.gene06648:intron 50.0%
TGGCACGTACTGCATCAAGT+CGG + chr3.3:76903703-76903722 None:intergenic 50.0%
! AAAAGCTTGTTTGCCCCCGA+CGG - chr3.3:76902436-76902455 MS.gene06648:CDS 50.0%
! CAGAAGATCACGAGGCATTC+TGG - chr3.3:76903951-76903970 MS.gene06648:intron 50.0%
! TTCTGAGGAATCCGAGTCAG+TGG + chr3.3:76903528-76903547 None:intergenic 50.0%
ACGCTGCCTAATTCTGCTCC+AGG + chr3.3:76904251-76904270 None:intergenic 55.0%
ACGGAATGCAATGGCATGGC+AGG - chr3.3:76904373-76904392 MS.gene06648:CDS 55.0%
CATCGATCTGCTGAGGCTGT+TGG - chr3.3:76903779-76903798 MS.gene06648:intron 55.0%
CCATCCGTTTCCCTGTTGGA+AGG - chr3.3:76903449-76903468 MS.gene06648:intron 55.0%
CCCACTGGAAAGGGATTCTC+TGG + chr3.3:76903396-76903415 None:intergenic 55.0%
CCCTGAAATTGGCTACTGCC+AGG - chr3.3:76903889-76903908 MS.gene06648:intron 55.0%
CCCTGGCAGTAGCCAATTTC+AGG + chr3.3:76903893-76903912 None:intergenic 55.0%
CCTTCCAACAGGGAAACGGA+TGG + chr3.3:76903452-76903471 None:intergenic 55.0%
CGAAAAAGCAATCCTCGGCC+TGG + chr3.3:76904111-76904130 None:intergenic 55.0%
CTCGTCGCCGTCTTCTTCTA+TGG - chr3.3:76900545-76900564 MS.gene06648:CDS 55.0%
GAAAGTGAACTTGGCAGCGG+CGG + chr3.3:76900462-76900481 None:intergenic 55.0%
GCAGTTGTCGGCATTGTCTG+CGG + chr3.3:76903256-76903275 None:intergenic 55.0%
GCCAGAGAATCCCTTTCCAG+TGG - chr3.3:76903392-76903411 MS.gene06648:intron 55.0%
GCTCTGTTCCCCACTGGAAA+GGG + chr3.3:76903405-76903424 None:intergenic 55.0%
GGAATCTGTATCGAGGGCAG+AGG + chr3.3:76903507-76903526 None:intergenic 55.0%
GGATGAACAGGAAGCTGGTG+AGG + chr3.3:76900855-76900874 None:intergenic 55.0%
GGATTCCTCAGAAAGTCCCG+AGG - chr3.3:76903535-76903554 MS.gene06648:intron 55.0%
TAGGGCACATCGATCTGCTG+AGG - chr3.3:76903772-76903791 MS.gene06648:intron 55.0%
TCGGATGATCCGTTGCCATG+TGG + chr3.3:76903684-76903703 None:intergenic 55.0%
! AAAGCTTGTTTGCCCCCGAC+GGG - chr3.3:76902437-76902456 MS.gene06648:CDS 55.0%
! CTCCGCTGCGAACTCTTTTC+AGG + chr3.3:76902489-76902508 None:intergenic 55.0%
!! TGCTGAGGCTGTTGGCTTGA+AGG - chr3.3:76903787-76903806 MS.gene06648:intron 55.0%
ACGATCGCGGATTCTCCCGT+CGG + chr3.3:76902455-76902474 None:intergenic 60.0%
ATCTGGGCTCTGTTCCCCAC+TGG + chr3.3:76903411-76903430 None:intergenic 60.0%
GCATCAGCGTTGCTGCTGCT+GGG + chr3.3:76903485-76903504 None:intergenic 60.0%
GGCTCTGTTCCCCACTGGAA+AGG + chr3.3:76903406-76903425 None:intergenic 60.0%
TACGGCGGTGCTCTTCACGA+CGG - chr3.3:76900508-76900527 MS.gene06648:CDS 60.0%
TTTGGAGAAGCTCCAGGCCG+AGG - chr3.3:76904096-76904115 MS.gene06648:intron 60.0%
!! GTGAAGAGCACCGCCGTAGT+CGG + chr3.3:76900506-76900525 None:intergenic 60.0%
ATCGCGGATTCTCCCGTCGG+GGG + chr3.3:76902452-76902471 None:intergenic 65.0%
CGATCGCGGATTCTCCCGTC+GGG + chr3.3:76902454-76902473 None:intergenic 65.0%
GACGGGAGAATCCGCGATCG+TGG - chr3.3:76902454-76902473 MS.gene06648:CDS 65.0%
GATCGCGGATTCTCCCGTCG+GGG + chr3.3:76902453-76902472 None:intergenic 65.0%
GGCATCAGCGTTGCTGCTGC+TGG + chr3.3:76903486-76903505 None:intergenic 65.0%
GGTGGCCACCTCTCCGACTA+CGG - chr3.3:76900490-76900509 MS.gene06648:CDS 65.0%
GTGCTCTTCACGACGGTGGC+CGG - chr3.3:76900515-76900534 MS.gene06648:CDS 65.0%
CACCGCCGTAGTCGGAGAGG+TGG + chr3.3:76900498-76900517 None:intergenic 70.0%
GACGGCGACGAGAGCGATGC+CGG + chr3.3:76900537-76900556 None:intergenic 70.0%
GCGGCGCCGTCGGAGAAGAA+CGG + chr3.3:76900443-76900462 None:intergenic 70.0%
GGCCACCTCTCCGACTACGG+CGG - chr3.3:76900493-76900512 MS.gene06648:CDS 70.0%
GGCGGTGCTCTTCACGACGG+TGG - chr3.3:76900511-76900530 MS.gene06648:CDS 70.0%
! GAGCACCGCCGTAGTCGGAG+AGG + chr3.3:76900501-76900520 None:intergenic 70.0%
! CTTGGCAGCGGCGGCGCCGT+CGG + chr3.3:76900453-76900472 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 76900401 76904486 76900401 ID=MS.gene06648
chr3.3 mRNA 76900401 76904486 76900401 ID=MS.gene06648.t1;Parent=MS.gene06648
chr3.3 exon 76904311 76904486 76904311 ID=MS.gene06648.t1.exon1;Parent=MS.gene06648.t1
chr3.3 CDS 76904311 76904486 76904311 ID=cds.MS.gene06648.t1;Parent=MS.gene06648.t1
chr3.3 exon 76902380 76902515 76902380 ID=MS.gene06648.t1.exon2;Parent=MS.gene06648.t1
chr3.3 CDS 76902380 76902515 76902380 ID=cds.MS.gene06648.t1;Parent=MS.gene06648.t1
chr3.3 exon 76902239 76902288 76902239 ID=MS.gene06648.t1.exon3;Parent=MS.gene06648.t1
chr3.3 CDS 76902239 76902288 76902239 ID=cds.MS.gene06648.t1;Parent=MS.gene06648.t1
chr3.3 exon 76901792 76901845 76901792 ID=MS.gene06648.t1.exon4;Parent=MS.gene06648.t1
chr3.3 CDS 76901792 76901845 76901792 ID=cds.MS.gene06648.t1;Parent=MS.gene06648.t1
chr3.3 exon 76900401 76901652 76900401 ID=MS.gene06648.t1.exon5;Parent=MS.gene06648.t1
chr3.3 CDS 76900401 76901652 76900401 ID=cds.MS.gene06648.t1;Parent=MS.gene06648.t1
Gene Sequence

>MS.gene06648

ATGTTCCTTTCCACTAACTTGAACGCCAACAACGAAACTCCGTTCTTCTCCGACGGCGCCGCCGCTGCCAAGTTCACTTTCATGAGCACGGTGGCCACCTCTCCGACTACGGCGGTGCTCTTCACGACGGTGGCCGGCATCGCTCTCGTCGCCGTCTTCTTCTATGGTGCAAGTAGGTAAACACCAAAATTTCCTCAAATGAACGAATCGCAATCTCAAAAACCCTAGCTCAATTCTTCACTCTGATTCAAGCATAGATGAAATTGTTTTCCATTCCGATTTTGTAAACAAAGTGAATATAGAAGGAATTATTTATAGATGAATCCTCTTAGAAGAAGTAACAATTCATCTTCATCATCTTCAAATAATTCATCTCCTTCTTCATCATCATCGAATTCATCGTGGATCCATTTGCGTTCGGTTTTATTCGTTGTTACTTCTTCTTCTTCTTCCTCACCAGCTTCCTGTTCATCCTCTGATCGGTGAGTTTTTCTTCTCTCTCCTCTTTCTCTCACTTCATTTTTTTTCTTCTATTACTTTGTTCTGTTTAATTCGTGCCAGATCTCGAATTTTTCGATATCACCGATCTTGTTATCAGTGTCAGTTTAGATTAATCAGCATATTTCTAATTTTGGGGCTTTTTGTTCGCTTGTGTGTTGTTCTGAGTGTGTAGGAATGGTTAATTTGTGGAATTGAAATGCTTTCAAGAATGAAAAACAAAACAAGTTTTGATTTTTATAAGAAGGGGAAGAAGGGTTGAAAAGGACTAGATAATTAGAGGGAGATAGATCTCTATTTTGGTTTATTTGCGGCATTTTATTTTTCTGTCTTTTTGCGTGTAATTAGATTTCTTCAATCTGAAGCTCCTTTTATCTTGTTTTGGATTTTTTATCCTTTTGATTTTTATATAACTTGAGTCCTGTCAAATCAAGTTGTCTATGATAAATTACCATGTTTAGGGAAAATGTAATTTGATTGTGATGATTGTGATCTTGATTGGATACCAAAACCCTTTTCTAGCTTTGTATTTTGCTTAGATCTTCCTATGCTAGAAGGAAGATCTATGCATAAATCATATTTAAGTGAGTATGTTCATTTGGAGATTTAAGAAAGAAATGTTTTTTCTGGACAAAATCAAATCTTTGGTGTTTAACTTGATTTAAGGAAATATATCATGTTGTATCAAGCATTACAATTCTTTAGGCTTTAGTATTCTAGATATTTTCTGGTTGTTGATGTGTGATGTGTCACAAGTCTTCAAGGACAATTTTTTACCTTTTGCCCTCTTTCTTTACTCTATTTAAATCAGATCCCATAAATTTTTGCTTGTAATAGTTTGGTTCATCCCTCCCTCATAACAAGTTAATTTTTTTTCCATATGCTCTCTCAAACTCTTTGTCAAGTGCTTATTTATGTCGGTAGATAAGTCCATATAAGCTTTTCATAAGCCAATCCAAACTCACCAGTATTTTGATTTCATATGTACATTTATAGAGGCATATTACTATATTGTCTATGTAAGTTGAGGATTTCTAGAACTTAATGCATTTAATCATTTTAGCATTATGGAAACAAGATAGCTATACATAAAAATATTTTAGTGTGGAATCCATTAACGGTAATGAAATGATACATGTATGAAATCTGTGAGAATGATAATTCACATAAATTTGTAATTCAATGCTAAAATATGTATCCACTTTTTTCCAATGTGATTGTAGAAAGCCACAATTGGCTTGGGCAAGTGTGTATATATATATATATATTTTTTTTTTGGGTACAAAGCTTGACCAAGTATATCTATTTCACTGGAGTATTGTGACATGCTTTTAAAATGAAATAATATATTTTTCTGGGTACTTCTTCACTCGCCTAAATGTCATAAATGATGTTTTCTGCCTGCTCTCTGTTCCAAAACTTATTTACATTCAAGCAGTAGTAGTAACGAGTAATTCTTTGTGACAATTTCAGAGGTCGTCTTAAATCACCGTGGTCACGCCGAAAAAGAAAACGTGTCCTTTCTCCTCAACAATGGAAAAGCTTGTTTGCCCCCGACGGGAGAATCCGCGATCGTGGAATGAAATTCCTGAAAAGAGTTCGCAGCGGAGTGAGTTTACTTATTTATCTGTTTAGATTTCAATTTAGTGGCTTTTGGTGTTTCATTTTGATATTGATAATGCTATGAATGTCTGATGCAGGGTGTTGATCCTAGTATCAGAGCTGAAGTTTGGCCTTTCCTACTTGGAGTGTAAGCATTCTTTCGCATTTCACTTCTAAATGATGTTTATTTATTTGGTGCATCTAGGATGCATGGATTTTTAGACAAACACGTCTTCTAAAGCCGGCATTGCATATACATTGAGCAAAATTTAAAGCTTCCCATTAGTATTTGATCTTTCATACTTATTTTTTTTTTTTTTTATTCTTTTTCAAAATTCAGTGTGATGGAATGAACAAGATTGTCTGTCAATTTTTTTTAATATCTTTTTTTCTGCTTCATGTTATGCATTAGGATGAATATTGATTACCTTGTCATTTATTATATTTTCTGTTATTTGAATTTATCCTCCAATTTTTTTTCTTTCTATTTTCATTTATTTAGACATTTATATGGTTACTGATTACTTTTTCGATTAAACAGATATGATTTAGATACTACCAAACAAGAAAGAGATGTTATACGAACTCAAAATAGGTATGCTTACAAGTTTATATGCAATCCATGCTTGATTCATCATATTTCTTTGGTCTTTAAAACTTTTTGTTTGTACTTCCCTTTATCCTTTTGTTCAGTTTAACATACTGTTACTTTTATTCTAAATCTTTGAACACAGAAAGAAGTATGAGAAACTCCGCAGACAATGCCGACAACTGCTAAAATCCAACAGTGGGAGCTTTAAGTTGATTGACATAGGTGAAGTCAACTATGAAGGAGATGGTGTGAGTTTTATTCAAGATTCTGGTTCTCCTAGTTCTGAAGATGCAGCAAGTGCCAGAGAATCCCTTTCCAGTGGGGAACAGAGCCCAGATTTTGAATATTCAGATGATCCATCCGTTTCCCTGTTGGAAGGAGATGATGCTCCCAGCAGCAGCAACGCTGATGCCTCTGCCCTCGATACAGATTCCACTGACTCGGATTCCTCAGAAAGTCCCGAGGTATTTCAGACATTTCCTTCTGATGATGGTCTGGAAGAGAACAATGCCAAGACAACTTCTAAGGATAGTTCTTCTCCCTCACAAATGAAAGGTGGGTCAACACTACGAAGTAGGGAAGACTTTGCCACATGGCAACGGATCATCCGACTTGATGCAGTACGTGCCAATGCAGAATGGATGCCATACTCTCCCTCTCAAGCTGTTGTTCCAGAAAGTAGGGCACATCGATCTGCTGAGGCTGTTGGCTTGAAGGATTATGGTCACCTAGATGCTGGCAGAATTTTTCATGCTGCTAGATTGGTTGCTATTCTTGAAGCATATGCACTATACGACCCTGAAATTGGCTACTGCCAGGGTATGAGCGATCTGTTATCTCCTATAATTAGTGTTGTATCAGAAGATCACGAGGCATTCTGGTGTTTTGTTGGATTTATGAAAAAGGCCAGGCAGAATTTCAGGCTTGATGAGGTGGGTATTAGAAGGCAACTTGATATAGTTGCAAAAATAATCAAGTTTAAGGATTCCCACCTGTTTAGGCATTTGGAGAAGCTCCAGGCCGAGGATTGCTTTTTCGTTTACAGGATGGTGGTAGTATTGTTCAGAAGGGAGTTGACATTTGAACAGACTCTCTGCCTTTGGGAAGTAATGTGGGCAGATCAAGCAGCAATCAGAGCTGGTATAGGGAAATCTGCCTGGAGCAGAATTAGGCAGCGTGCTCCACCAACAGACGATTTATTGCTTTTTGCAATAGCAGCCTCAGTGTTACAAAGAAGGAAATTGATCCTTGAGAAGTATAGCAGCATGGATGATATCCTTACGGAATGCAATGGCATGGCAGGACACCTTGATGTTTGGAAGCTTCTGGATGATGCCCATAACTTGGTGGTCACCCTTCATGATAAAATGAAGATAGAAGCATCATTCCAATGA
Protein sequence

>MS.gene06648.t1

MFLSTNLNANNETPFFSDGAAAAKFTFMSTVATSPTTAVLFTTVAGIALVAVFFYGASRGRLKSPWSRRKRKRVLSPQQWKSLFAPDGRIRDRGMKFLKRVRSGGVDPSIRAEVWPFLLGVYDLDTTKQERDVIRTQNRKKYEKLRRQCRQLLKSNSGSFKLIDIGEVNYEGDGVSFIQDSGSPSSEDAASARESLSSGEQSPDFEYSDDPSVSLLEGDDAPSSSNADASALDTDSTDSDSSESPEVFQTFPSDDGLEENNAKTTSKDSSSPSQMKGGSTLRSREDFATWQRIIRLDAVRANAEWMPYSPSQAVVPESRAHRSAEAVGLKDYGHLDAGRIFHAARLVAILEAYALYDPEIGYCQGMSDLLSPIISVVSEDHEAFWCFVGFMKKARQNFRLDEVGIRRQLDIVAKIIKFKDSHLFRHLEKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVMWADQAAIRAGIGKSAWSRIRQRAPPTDDLLLFAIAASVLQRRKLILEKYSSMDDILTECNGMAGHLDVWKLLDDAHNLVVTLHDKMKIEASFQ