Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067057.t1 | XP_003601859.1 | 92 | 324 | 26 | 0 | 1 | 324 | 1 | 324 | 1.60E-165 | 592 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067057.t1 | Q8L9C4 | 49.8 | 307 | 151 | 3 | 8 | 313 | 13 | 317 | 7.3e-82 | 305.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067057.t1 | G7J2K3 | 92.0 | 324 | 26 | 0 | 1 | 324 | 1 | 324 | 1.2e-165 | 592.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053630 | MS.gene067057 | 0.813409 | 2.60E-51 | -1.69E-46 |
| MS.gene055356 | MS.gene067057 | 0.804162 | 2.47E-49 | -1.69E-46 |
| MS.gene058168 | MS.gene067057 | 0.80822 | 3.45E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067057.t1 | MTR_3g086190 | 91.975 | 324 | 26 | 0 | 1 | 324 | 1 | 324 | 0.0 | 616 |
| MS.gene067057.t1 | MTR_3g086210 | 52.288 | 306 | 143 | 3 | 7 | 311 | 14 | 317 | 2.87e-109 | 321 |
| MS.gene067057.t1 | MTR_8g089575 | 46.026 | 302 | 153 | 5 | 14 | 309 | 14 | 311 | 4.03e-84 | 256 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene067057.t1 | AT1G67730 | 50.162 | 309 | 147 | 4 | 8 | 313 | 13 | 317 | 1.81e-107 | 316 |
| MS.gene067057.t1 | AT1G24470 | 44.444 | 306 | 158 | 5 | 7 | 306 | 12 | 311 | 8.39e-86 | 261 |
| MS.gene067057.t1 | AT3G47350 | 31.897 | 232 | 139 | 11 | 46 | 268 | 46 | 267 | 2.94e-17 | 81.6 |
| MS.gene067057.t1 | AT3G47350 | 32.828 | 198 | 121 | 9 | 46 | 241 | 46 | 233 | 1.18e-16 | 79.7 |
| MS.gene067057.t1 | AT3G47360 | 34.197 | 193 | 117 | 7 | 50 | 241 | 51 | 234 | 2.54e-16 | 78.6 |
| MS.gene067057.t1 | AT5G65205 | 33.019 | 212 | 114 | 9 | 50 | 253 | 12 | 203 | 6.19e-16 | 77.0 |
| MS.gene067057.t1 | AT5G10050 | 32.057 | 209 | 120 | 9 | 50 | 253 | 11 | 202 | 9.72e-16 | 76.6 |
| MS.gene067057.t1 | AT3G03330 | 28.929 | 280 | 178 | 12 | 25 | 296 | 21 | 287 | 1.52e-14 | 73.6 |
| MS.gene067057.t1 | AT5G50690 | 29.915 | 234 | 147 | 11 | 1 | 228 | 1 | 223 | 2.18e-12 | 66.6 |
| MS.gene067057.t1 | AT5G50590 | 29.915 | 234 | 147 | 11 | 1 | 228 | 1 | 223 | 2.18e-12 | 66.6 |
| MS.gene067057.t1 | AT5G50690 | 29.958 | 237 | 143 | 12 | 1 | 228 | 1 | 223 | 2.69e-12 | 66.6 |
| MS.gene067057.t1 | AT5G50590 | 29.958 | 237 | 143 | 12 | 1 | 228 | 1 | 223 | 2.69e-12 | 66.6 |
| MS.gene067057.t1 | AT5G50600 | 26.906 | 223 | 143 | 10 | 24 | 242 | 29 | 235 | 4.41e-11 | 63.5 |
| MS.gene067057.t1 | AT5G50700 | 26.906 | 223 | 143 | 10 | 24 | 242 | 29 | 235 | 4.41e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTTGCTGTATTTATC+TGG | 0.218962 | 3.4:-80370816 | None:intergenic |
| GTGGGGAAGAAATAATTAAA+AGG | 0.234262 | 3.4:+80369207 | MS.gene067057:CDS |
| TCCATATCCAGTTGAGAAAA+TGG | 0.256156 | 3.4:-80368950 | None:intergenic |
| GTTCTCTGCATGCACCAATT+TGG | 0.257486 | 3.4:+80369981 | MS.gene067057:CDS |
| GAGATCATAGATAGAGGTTT+TGG | 0.260229 | 3.4:+80369140 | MS.gene067057:CDS |
| GAAAATTCCTGATGTATTCT+TGG | 0.266263 | 3.4:+80370911 | MS.gene067057:CDS |
| TGCTTCTGATCCTTTGATTT+GGG | 0.273639 | 3.4:-80370991 | None:intergenic |
| ATGCTTCTGATCCTTTGATT+TGG | 0.286947 | 3.4:-80370992 | None:intergenic |
| TAGCTGCTTGTATTCCAAAT+TGG | 0.299344 | 3.4:-80369995 | None:intergenic |
| GCTATTATTAACATTGGTTC+TGG | 0.322146 | 3.4:+80369419 | MS.gene067057:CDS |
| TGAGGTTGATTTGGATTTGA+TGG | 0.331496 | 3.4:+80369313 | MS.gene067057:CDS |
| ACAGCAAAGCATGCACAAAA+TGG | 0.347107 | 3.4:+80370826 | MS.gene067057:CDS |
| GCTAGTAGGAAGAAATTATC+AGG | 0.382917 | 3.4:-80368885 | None:intergenic |
| AACTCAAAGAATATGGATCA+TGG | 0.413665 | 3.4:+80368997 | MS.gene067057:CDS |
| CTACTAGCTACAACCCTCTT+AGG | 0.414187 | 3.4:+80368900 | MS.gene067057:CDS |
| TTGCTGTATTTATCTGGTGT+TGG | 0.417488 | 3.4:-80370810 | None:intergenic |
| AGGGTTGAAGAAGCAATATA+TGG | 0.423073 | 3.4:+80369227 | MS.gene067057:CDS |
| ACCTATTCCGTCGGTGGAGC+CGG | 0.423748 | 3.4:-80369030 | None:intergenic |
| TGGGGAAGAAATAATTAAAA+GGG | 0.429047 | 3.4:+80369208 | MS.gene067057:CDS |
| GGACTCAACATTCTCTTAGT+TGG | 0.429233 | 3.4:+80369083 | MS.gene067057:CDS |
| TTGCTTTACTTGCGTAAAAG+AGG | 0.440044 | 3.4:+80370954 | MS.gene067057:CDS |
| ATCTGCAGTCATTTCTCATA+AGG | 0.441313 | 3.4:+80370889 | MS.gene067057:CDS |
| GATGTTGCTTCAAGTTTAAG+AGG | 0.454000 | 3.4:-80369113 | None:intergenic |
| GGCTATTGAGTTTGCATCGA+AGG | 0.454752 | 3.4:+80369061 | MS.gene067057:CDS |
| TAGATATGCAAAATATTAGT+GGG | 0.462830 | 3.4:+80369189 | MS.gene067057:CDS |
| ACCGGCTCCACCGACGGAAT+AGG | 0.463211 | 3.4:+80369029 | MS.gene067057:CDS |
| ATGACTGCAGATTGTGAAAG+AGG | 0.476374 | 3.4:-80370878 | None:intergenic |
| TAGGAATCCAAGAATACATC+AGG | 0.482800 | 3.4:-80370918 | None:intergenic |
| AAAGGAGCTATTATTAACAT+TGG | 0.495088 | 3.4:+80369413 | MS.gene067057:CDS |
| GCAATATATGGTTTAGATGT+GGG | 0.498444 | 3.4:+80369239 | MS.gene067057:CDS |
| TGAATGTTGAAGCAACAACT+TGG | 0.501215 | 3.4:+80369351 | MS.gene067057:CDS |
| AGGAATTGACATCCAGTGTC+AGG | 0.503731 | 3.4:+80370017 | MS.gene067057:CDS |
| TCAAAAGAGATCATAGATAG+AGG | 0.505199 | 3.4:+80369134 | MS.gene067057:CDS |
| CTAAGAGGGTTGTAGCTAGT+AGG | 0.507413 | 3.4:-80368899 | None:intergenic |
| GGCTTTACCTATTCCGTCGG+TGG | 0.518033 | 3.4:-80369036 | None:intergenic |
| ATAGATATGCAAAATATTAG+TGG | 0.521164 | 3.4:+80369188 | MS.gene067057:CDS |
| AAACAGAGATGAAGCCTAAG+AGG | 0.530377 | 3.4:-80368914 | None:intergenic |
| AGCAATATATGGTTTAGATG+TGG | 0.530533 | 3.4:+80369238 | MS.gene067057:CDS |
| AGTGTGACAAGAGGATATGA+AGG | 0.532299 | 3.4:-80369458 | None:intergenic |
| TTTAGTTAATGGTGCTGGTG+TGG | 0.543103 | 3.4:+80369265 | MS.gene067057:CDS |
| GGATCATGGGCTATAATCAC+CGG | 0.545103 | 3.4:+80369011 | MS.gene067057:CDS |
| ACTCAAAGAATATGGATCAT+GGG | 0.546852 | 3.4:+80368998 | MS.gene067057:CDS |
| AAAGCATGCACAAAATGGAT+TGG | 0.549128 | 3.4:+80370831 | MS.gene067057:CDS |
| ATCAAGGACTCCCAAATCAA+AGG | 0.561610 | 3.4:+80370981 | MS.gene067057:CDS |
| GCTATTGAGTTTGCATCGAA+GGG | 0.567050 | 3.4:+80369062 | MS.gene067057:CDS |
| CATGGCTTTACCTATTCCGT+CGG | 0.570181 | 3.4:-80369039 | None:intergenic |
| ATAATCACCGGCTCCACCGA+CGG | 0.570600 | 3.4:+80369023 | MS.gene067057:CDS |
| TGCAGATTGTGAAAGAGGTA+AGG | 0.571426 | 3.4:-80370873 | None:intergenic |
| GCGTAAAAGAGGACTCATCA+AGG | 0.575238 | 3.4:+80370965 | MS.gene067057:CDS |
| ATGTTGCTTCAAGTTTAAGA+GGG | 0.582534 | 3.4:-80369112 | None:intergenic |
| AAGCAAATTACGCAACATGT+AGG | 0.583318 | 3.4:-80370937 | None:intergenic |
| CGATGCAAACTCAATAGCCA+TGG | 0.598436 | 3.4:-80369057 | None:intergenic |
| GGCAACAGAGAACCTGACAC+TGG | 0.604575 | 3.4:-80370029 | None:intergenic |
| AACAGAGATGAAGCCTAAGA+GGG | 0.614837 | 3.4:-80368913 | None:intergenic |
| GCTGCATAAAGTGTGACAAG+AGG | 0.621587 | 3.4:-80369467 | None:intergenic |
| AATTTGGAATACAAGCAGCT+AGG | 0.635752 | 3.4:+80369997 | MS.gene067057:CDS |
| CGACGGAATAGGTAAAGCCA+TGG | 0.648160 | 3.4:+80369040 | MS.gene067057:CDS |
| AGATATGCAAAATATTAGTG+GGG | 0.650967 | 3.4:+80369190 | MS.gene067057:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGAAATGAAACATA+AGG | + | chr3.4:80370158-80370177 | MS.gene067057:intron | 15.0% |
| !! | ACAAAATTATATAGAGTGAA+AGG | - | chr3.4:80369739-80369758 | None:intergenic | 20.0% |
| !! | AGATTATTCATCAAAACATA+AGG | - | chr3.4:80370067-80370086 | None:intergenic | 20.0% |
| !! | AGTATGATTAAGAAGAAAAA+AGG | + | chr3.4:80369395-80369414 | MS.gene067057:CDS | 20.0% |
| !! | AGTTTATCACCATTAATTAA+AGG | - | chr3.4:80370137-80370156 | None:intergenic | 20.0% |
| !! | ATAGATATGCAAAATATTAG+TGG | + | chr3.4:80369188-80369207 | MS.gene067057:CDS | 20.0% |
| !! | CATAAAAAACTCAAAGAATA+TGG | + | chr3.4:80368990-80369009 | MS.gene067057:CDS | 20.0% |
| !! | GATTATTCATCAAAACATAA+GGG | - | chr3.4:80370066-80370085 | None:intergenic | 20.0% |
| !! | GTTTAGAAAGAATAAGAAAA+GGG | - | chr3.4:80369593-80369612 | None:intergenic | 20.0% |
| !! | GTTTATCACCATTAATTAAA+GGG | - | chr3.4:80370136-80370155 | None:intergenic | 20.0% |
| !! | TACTTTCTTTCTAATCTAAA+AGG | - | chr3.4:80369627-80369646 | None:intergenic | 20.0% |
| !! | TAGATATGCAAAATATTAGT+GGG | + | chr3.4:80369189-80369208 | MS.gene067057:CDS | 20.0% |
| !! | TCAAGATATGAATTCATATT+TGG | - | chr3.4:80369935-80369954 | None:intergenic | 20.0% |
| !! | TGAAATGAATTTGAATATAC+AGG | + | chr3.4:80370734-80370753 | MS.gene067057:intron | 20.0% |
| !! | TTAATTAATACAACTACTTC+AGG | - | chr3.4:80369910-80369929 | None:intergenic | 20.0% |
| !! | TTACATAAATAACAATGAAG+AGG | - | chr3.4:80369873-80369892 | None:intergenic | 20.0% |
| !! | TTCAATGTAATTATATGTGT+TGG | + | chr3.4:80370432-80370451 | MS.gene067057:intron | 20.0% |
| !!! | ATGTAAAGTATATTTTCATG+TGG | + | chr3.4:80370243-80370262 | MS.gene067057:intron | 20.0% |
| !!! | TATTCTTTGAGTTTTTTATG+TGG | - | chr3.4:80368990-80369009 | None:intergenic | 20.0% |
| !!! | TGTAAAGTATATTTTCATGT+GGG | + | chr3.4:80370244-80370263 | MS.gene067057:intron | 20.0% |
| !!! | TTTTTCTTCTTAATCATACT+AGG | - | chr3.4:80369395-80369414 | None:intergenic | 20.0% |
| ! | AAAATCACTGTAACATACAA+TGG | - | chr3.4:80370573-80370592 | None:intergenic | 25.0% |
| ! | AAAGGAGCTATTATTAACAT+TGG | + | chr3.4:80369413-80369432 | MS.gene067057:CDS | 25.0% |
| ! | ACATAAAAAAAGAGTTAGGT+TGG | - | chr3.4:80370314-80370333 | None:intergenic | 25.0% |
| ! | AGATATGCAAAATATTAGTG+GGG | + | chr3.4:80369190-80369209 | MS.gene067057:CDS | 25.0% |
| ! | CAAATTTACACTAATAGACA+TGG | - | chr3.4:80369713-80369732 | None:intergenic | 25.0% |
| ! | GGTTTAGAAAGAATAAGAAA+AGG | - | chr3.4:80369594-80369613 | None:intergenic | 25.0% |
| ! | TCATGAAAAAATCTAGCATA+AGG | - | chr3.4:80369296-80369315 | None:intergenic | 25.0% |
| ! | TGGGGAAGAAATAATTAAAA+GGG | + | chr3.4:80369208-80369227 | MS.gene067057:CDS | 25.0% |
| !! | ATTTTTGTTGACACAAACAA+TGG | - | chr3.4:80370762-80370781 | None:intergenic | 25.0% |
| !!! | AACATAAGGTAATTGATTTG+AGG | + | chr3.4:80370172-80370191 | MS.gene067057:intron | 25.0% |
| !!! | AACCTAACTCTTTTTTTATG+TGG | + | chr3.4:80370313-80370332 | MS.gene067057:intron | 25.0% |
| !!! | ATTTTTTCATGAGGTTGATT+TGG | + | chr3.4:80369304-80369323 | MS.gene067057:CDS | 25.0% |
| !!! | TGTAATTTTTAGTCCATGTT+TGG | + | chr3.4:80370526-80370545 | MS.gene067057:intron | 25.0% |
| !!! | TTATGCTAGATTTTTTCATG+AGG | + | chr3.4:80369295-80369314 | MS.gene067057:CDS | 25.0% |
| !!! | TTTTTTATCTTCCAACTTGA+AGG | + | chr3.4:80370276-80370295 | MS.gene067057:intron | 25.0% |
| AACAAAAATGACAAGGATGA+GGG | + | chr3.4:80370773-80370792 | MS.gene067057:CDS | 30.0% | |
| AACTCAAAGAATATGGATCA+TGG | + | chr3.4:80368997-80369016 | MS.gene067057:CDS | 30.0% | |
| ACTCAAAGAATATGGATCAT+GGG | + | chr3.4:80368998-80369017 | MS.gene067057:CDS | 30.0% | |
| AGCAATATATGGTTTAGATG+TGG | + | chr3.4:80369238-80369257 | MS.gene067057:CDS | 30.0% | |
| CACCACATAAAAAAAGAGTT+AGG | - | chr3.4:80370318-80370337 | None:intergenic | 30.0% | |
| GAAAATTCCTGATGTATTCT+TGG | + | chr3.4:80370911-80370930 | MS.gene067057:CDS | 30.0% | |
| GCAATATATGGTTTAGATGT+GGG | + | chr3.4:80369239-80369258 | MS.gene067057:CDS | 30.0% | |
| GTGGGGAAGAAATAATTAAA+AGG | + | chr3.4:80369207-80369226 | MS.gene067057:CDS | 30.0% | |
| TACTCACACCCTTTAATTAA+TGG | + | chr3.4:80370125-80370144 | MS.gene067057:intron | 30.0% | |
| TCAAAAGAGATCATAGATAG+AGG | + | chr3.4:80369134-80369153 | MS.gene067057:CDS | 30.0% | |
| TTCTTTCTAAACCATGCTTA+TGG | + | chr3.4:80369601-80369620 | MS.gene067057:intron | 30.0% | |
| TTGTGTCAACAAAAATGACA+AGG | + | chr3.4:80370766-80370785 | MS.gene067057:CDS | 30.0% | |
| ! | ATGTTGCTTCAAGTTTAAGA+GGG | - | chr3.4:80369115-80369134 | None:intergenic | 30.0% |
| ! | GTAATTATATGTGTTGGTGT+CGG | + | chr3.4:80370438-80370457 | MS.gene067057:intron | 30.0% |
| ! | TCTTTTTCCATTTTCTCAAC+TGG | + | chr3.4:80368943-80368962 | MS.gene067057:CDS | 30.0% |
| !! | AAAAAAGAGTTAGGTTGGTA+TGG | - | chr3.4:80370309-80370328 | None:intergenic | 30.0% |
| !! | ATGGATTGGCTATGAAAAAT+TGG | + | chr3.4:80370845-80370864 | MS.gene067057:CDS | 30.0% |
| !! | GCTATTATTAACATTGGTTC+TGG | + | chr3.4:80369419-80369438 | MS.gene067057:CDS | 30.0% |
| !! | TATAGGTACAAAGGTATCTA+AGG | - | chr3.4:80370688-80370707 | None:intergenic | 30.0% |
| !!! | GATGTGGGAATTTTAGTTAA+TGG | + | chr3.4:80369254-80369273 | MS.gene067057:CDS | 30.0% |
| AAAGCATGCACAAAATGGAT+TGG | + | chr3.4:80370831-80370850 | MS.gene067057:CDS | 35.0% | |
| AACATAAGGGAAAAGAAGAG+AGG | - | chr3.4:80370053-80370072 | None:intergenic | 35.0% | |
| AAGCAAATTACGCAACATGT+AGG | - | chr3.4:80370940-80370959 | None:intergenic | 35.0% | |
| AATCTAAAAGGCCATAAGCA+TGG | - | chr3.4:80369615-80369634 | None:intergenic | 35.0% | |
| AGGGTTGAAGAAGCAATATA+TGG | + | chr3.4:80369227-80369246 | MS.gene067057:CDS | 35.0% | |
| ATCTCAAGGTATAGGTACAA+AGG | - | chr3.4:80370697-80370716 | None:intergenic | 35.0% | |
| ATCTGCAGTCATTTCTCATA+AGG | + | chr3.4:80370889-80370908 | MS.gene067057:CDS | 35.0% | |
| ATGCTTCTGATCCTTTGATT+TGG | - | chr3.4:80370995-80371014 | None:intergenic | 35.0% | |
| CAACAAAAATGACAAGGATG+AGG | + | chr3.4:80370772-80370791 | MS.gene067057:CDS | 35.0% | |
| CAGAATACATCTCAAGGTAT+AGG | - | chr3.4:80370705-80370724 | None:intergenic | 35.0% | |
| GCTAGTAGGAAGAAATTATC+AGG | - | chr3.4:80368888-80368907 | None:intergenic | 35.0% | |
| GTATCAATGACCAACATCTT+TGG | - | chr3.4:80370108-80370127 | None:intergenic | 35.0% | |
| TAAGCTCAGAATACATCTCA+AGG | - | chr3.4:80370711-80370730 | None:intergenic | 35.0% | |
| TACTCCTAACTTATGAAGCA+CGG | - | chr3.4:80370486-80370505 | None:intergenic | 35.0% | |
| TAGCTGCTTGTATTCCAAAT+TGG | - | chr3.4:80369998-80370017 | None:intergenic | 35.0% | |
| TAGGAATCCAAGAATACATC+AGG | - | chr3.4:80370921-80370940 | None:intergenic | 35.0% | |
| TCCATATCCAGTTGAGAAAA+TGG | - | chr3.4:80368953-80368972 | None:intergenic | 35.0% | |
| TGAATGTTGAAGCAACAACT+TGG | + | chr3.4:80369351-80369370 | MS.gene067057:CDS | 35.0% | |
| TTGCTGTATTTATCTGGTGT+TGG | - | chr3.4:80370813-80370832 | None:intergenic | 35.0% | |
| TTGCTTTACTTGCGTAAAAG+AGG | + | chr3.4:80370954-80370973 | MS.gene067057:CDS | 35.0% | |
| ! | AATTTGGAATACAAGCAGCT+AGG | + | chr3.4:80369997-80370016 | MS.gene067057:CDS | 35.0% |
| ! | CATGCTTTGCTGTATTTATC+TGG | - | chr3.4:80370819-80370838 | None:intergenic | 35.0% |
| ! | GAGATCATAGATAGAGGTTT+TGG | + | chr3.4:80369140-80369159 | MS.gene067057:CDS | 35.0% |
| ! | GATGTTGCTTCAAGTTTAAG+AGG | - | chr3.4:80369116-80369135 | None:intergenic | 35.0% |
| ! | TATTTTGCTGACAGTGTGTT+AGG | - | chr3.4:80369670-80369689 | None:intergenic | 35.0% |
| ! | TCCATTTTCTCAACTGGATA+TGG | + | chr3.4:80368949-80368968 | MS.gene067057:CDS | 35.0% |
| ! | TGCTTCTGATCCTTTGATTT+GGG | - | chr3.4:80370994-80371013 | None:intergenic | 35.0% |
| !! | GTGCTTGAGTTGAATATGTT+AGG | + | chr3.4:80370335-80370354 | MS.gene067057:intron | 35.0% |
| !! | TGAGGTTGATTTGGATTTGA+TGG | + | chr3.4:80369313-80369332 | MS.gene067057:CDS | 35.0% |
| !!! | GGAATTTTAGTTAATGGTGC+TGG | + | chr3.4:80369260-80369279 | MS.gene067057:CDS | 35.0% |
| AAACAGAGATGAAGCCTAAG+AGG | - | chr3.4:80368917-80368936 | None:intergenic | 40.0% | |
| AACAGAGATGAAGCCTAAGA+GGG | - | chr3.4:80368916-80368935 | None:intergenic | 40.0% | |
| AACTCACGTCAATCCAAACA+TGG | - | chr3.4:80370542-80370561 | None:intergenic | 40.0% | |
| ACAGCAAAGCATGCACAAAA+TGG | + | chr3.4:80370826-80370845 | MS.gene067057:CDS | 40.0% | |
| AGTGTGACAAGAGGATATGA+AGG | - | chr3.4:80369461-80369480 | None:intergenic | 40.0% | |
| ATCAAGGACTCCCAAATCAA+AGG | + | chr3.4:80370981-80371000 | MS.gene067057:CDS | 40.0% | |
| ATGACTGCAGATTGTGAAAG+AGG | - | chr3.4:80370881-80370900 | None:intergenic | 40.0% | |
| ATGGTAGGTTTCCTTCAAGT+TGG | - | chr3.4:80370290-80370309 | None:intergenic | 40.0% | |
| GACAACTCATCCAAAGATGT+TGG | + | chr3.4:80370095-80370114 | MS.gene067057:intron | 40.0% | |
| GCTATTGAGTTTGCATCGAA+GGG | + | chr3.4:80369062-80369081 | MS.gene067057:CDS | 40.0% | |
| GGACTCAACATTCTCTTAGT+TGG | + | chr3.4:80369083-80369102 | MS.gene067057:CDS | 40.0% | |
| TGCAGATTGTGAAAGAGGTA+AGG | - | chr3.4:80370876-80370895 | None:intergenic | 40.0% | |
| !! | AAGAGTTAGGTTGGTATGGT+AGG | - | chr3.4:80370305-80370324 | None:intergenic | 40.0% |
| !! | TTTAGTTAATGGTGCTGGTG+TGG | + | chr3.4:80369265-80369284 | MS.gene067057:CDS | 40.0% |
| AGGAATTGACATCCAGTGTC+AGG | + | chr3.4:80370017-80370036 | MS.gene067057:CDS | 45.0% | |
| AGTGTGTTAGGCTTAGGCAA+AGG | - | chr3.4:80369658-80369677 | None:intergenic | 45.0% | |
| ATGTACACTGACACGTCGAT+AGG | + | chr3.4:80370383-80370402 | MS.gene067057:intron | 45.0% | |
| CGATGCAAACTCAATAGCCA+TGG | - | chr3.4:80369060-80369079 | None:intergenic | 45.0% | |
| CTAAGAGGGTTGTAGCTAGT+AGG | - | chr3.4:80368902-80368921 | None:intergenic | 45.0% | |
| CTACTAGCTACAACCCTCTT+AGG | + | chr3.4:80368900-80368919 | MS.gene067057:CDS | 45.0% | |
| GCGTAAAAGAGGACTCATCA+AGG | + | chr3.4:80370965-80370984 | MS.gene067057:CDS | 45.0% | |
| GCTGCATAAAGTGTGACAAG+AGG | - | chr3.4:80369470-80369489 | None:intergenic | 45.0% | |
| GGCTATTGAGTTTGCATCGA+AGG | + | chr3.4:80369061-80369080 | MS.gene067057:CDS | 45.0% | |
| GTGTCCGTGCTTCATAAGTT+AGG | + | chr3.4:80370479-80370498 | MS.gene067057:intron | 45.0% | |
| GTTCTCTGCATGCACCAATT+TGG | + | chr3.4:80369981-80370000 | MS.gene067057:CDS | 45.0% | |
| TGTACACTGACACGTCGATA+GGG | + | chr3.4:80370384-80370403 | MS.gene067057:intron | 45.0% | |
| ! | CATGGCTTTACCTATTCCGT+CGG | - | chr3.4:80369042-80369061 | None:intergenic | 45.0% |
| ! | GGATCATGGGCTATAATCAC+CGG | + | chr3.4:80369011-80369030 | MS.gene067057:CDS | 45.0% |
| CGACGGAATAGGTAAAGCCA+TGG | + | chr3.4:80369040-80369059 | MS.gene067057:CDS | 50.0% | |
| GCTGACAGTGTGTTAGGCTT+AGG | - | chr3.4:80369664-80369683 | None:intergenic | 50.0% | |
| GTCAGTGTACATGTCGTGTC+AGG | - | chr3.4:80370375-80370394 | None:intergenic | 50.0% | |
| TATGAAGCACGGACACTCCT+CGG | - | chr3.4:80370475-80370494 | None:intergenic | 50.0% | |
| GGCAACAGAGAACCTGACAC+TGG | - | chr3.4:80370032-80370051 | None:intergenic | 55.0% | |
| GGCTTTACCTATTCCGTCGG+TGG | - | chr3.4:80369039-80369058 | None:intergenic | 55.0% | |
| TGTCGGACGTGTCTAATCCG+AGG | + | chr3.4:80370455-80370474 | MS.gene067057:intron | 55.0% | |
| !! | ATAATCACCGGCTCCACCGA+CGG | + | chr3.4:80369023-80369042 | MS.gene067057:CDS | 55.0% |
| ACCTATTCCGTCGGTGGAGC+CGG | - | chr3.4:80369033-80369052 | None:intergenic | 60.0% | |
| ! | ACCGGCTCCACCGACGGAAT+AGG | + | chr3.4:80369029-80369048 | MS.gene067057:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 80368876 | 80371037 | 80368876 | ID=MS.gene067057 |
| chr3.4 | mRNA | 80368876 | 80371037 | 80368876 | ID=MS.gene067057.t1;Parent=MS.gene067057 |
| chr3.4 | exon | 80368876 | 80369498 | 80368876 | ID=MS.gene067057.t1.exon1;Parent=MS.gene067057.t1 |
| chr3.4 | CDS | 80368876 | 80369498 | 80368876 | ID=cds.MS.gene067057.t1;Parent=MS.gene067057.t1 |
| chr3.4 | exon | 80369969 | 80370038 | 80369969 | ID=MS.gene067057.t1.exon2;Parent=MS.gene067057.t1 |
| chr3.4 | CDS | 80369969 | 80370038 | 80369969 | ID=cds.MS.gene067057.t1;Parent=MS.gene067057.t1 |
| chr3.4 | exon | 80370756 | 80371037 | 80370756 | ID=MS.gene067057.t1.exon3;Parent=MS.gene067057.t1 |
| chr3.4 | CDS | 80370756 | 80371037 | 80370756 | ID=cds.MS.gene067057.t1;Parent=MS.gene067057.t1 |
| Gene Sequence |
| Protein sequence |
