AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055356


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055356.t1 MTR_8g005295 92.427 515 36 1 1 515 1 512 0.0 981
MS.gene055356.t1 MTR_8g005285 88.155 515 44 1 1 515 1 498 0.0 929
MS.gene055356.t1 MTR_8g005325 50.398 502 179 9 19 515 38 474 1.54e-161 467
MS.gene055356.t1 MTR_8g005235 49.603 504 179 11 19 515 9 444 4.51e-159 459
MS.gene055356.t1 MTR_0209s0060 46.263 495 181 13 19 508 11 425 5.51e-134 395
MS.gene055356.t1 MTR_0209s0030 46.263 495 181 13 19 508 11 425 5.51e-134 395
MS.gene055356.t1 MTR_8g006525 46.245 506 188 13 12 512 4 430 4.15e-132 390
MS.gene055356.t1 MTR_8g005265 45.233 493 192 14 36 514 27 455 3.98e-127 379
MS.gene055356.t1 MTR_8g005225 42.748 524 223 12 1 513 1 458 1.02e-122 367
MS.gene055356.t1 MTR_3g079390 33.669 496 246 16 17 503 20 441 8.75e-65 217
MS.gene055356.t1 MTR_6g010920 31.557 488 220 17 32 508 21 405 2.27e-61 207
MS.gene055356.t1 MTR_6g009590 30.550 491 225 16 22 497 7 396 6.54e-60 203
MS.gene055356.t1 MTR_6g011050 30.508 472 217 14 36 497 24 394 3.11e-58 199
MS.gene055356.t1 MTR_4g112660 38.529 340 119 9 188 510 90 356 9.96e-57 193
MS.gene055356.t1 MTR_4g112660 46.429 84 41 3 36 118 6 86 1.01e-14 76.3
MS.gene055356.t1 MTR_6g009610 31.158 475 225 15 29 497 18 396 2.49e-56 194
MS.gene055356.t1 MTR_6g011060 29.757 494 235 15 25 503 14 410 4.20e-56 193
MS.gene055356.t1 MTR_0024s0080 30.753 465 217 14 38 497 27 391 1.49e-52 184
MS.gene055356.t1 MTR_6g010890 29.783 507 235 19 19 503 10 417 1.28e-51 181
MS.gene055356.t1 MTR_3g107590 30.526 475 225 14 34 496 24 405 6.41e-51 180
MS.gene055356.t1 MTR_6g010810 29.218 486 230 16 35 508 21 404 2.68e-48 172
MS.gene055356.t1 MTR_6g009170 29.376 497 231 17 22 496 7 405 8.95e-48 171
MS.gene055356.t1 MTR_2g036320 27.557 479 263 14 29 505 61 457 4.56e-44 163
MS.gene055356.t1 MTR_2g041180 27.542 472 260 13 36 505 50 441 8.75e-43 159
MS.gene055356.t1 MTR_2g035640 27.189 434 219 9 73 503 1 340 5.53e-38 143
MS.gene055356.t1 MTR_5g086340 25.684 475 272 10 37 508 33 429 2.09e-34 135
MS.gene055356.t1 MTR_5g016570 27.311 476 258 14 32 488 97 503 4.86e-32 129
MS.gene055356.t1 MTR_6g010850 28.889 405 181 14 109 503 33 340 1.33e-31 125
MS.gene055356.t1 MTR_7g011980 34.359 195 104 4 316 508 166 338 1.42e-25 108
MS.gene055356.t1 MTR_7g011980 31.579 171 66 4 29 199 18 137 6.73e-17 82.4
MS.gene055356.t1 MTR_7g060310 24.230 487 294 14 46 503 39 479 6.87e-24 105
MS.gene055356.t1 MTR_7g059540 22.593 509 272 15 38 503 29 458 9.34e-23 101
MS.gene055356.t1 MTR_7g059540 22.481 516 274 16 38 503 28 467 6.85e-22 99.0
MS.gene055356.t1 MTR_6g009580 30.374 214 120 4 289 496 29 219 3.81e-21 92.8
MS.gene055356.t1 MTR_7g060260 22.747 466 255 12 38 488 28 403 1.51e-19 91.7
MS.gene055356.t1 MTR_7g060115 23.029 482 268 15 53 505 44 451 1.50e-18 88.6
MS.gene055356.t1 MTR_7g060320 22.981 483 271 16 38 488 28 441 2.28e-18 88.2
MS.gene055356.t1 MTR_5g086230 30.939 181 103 4 37 213 29 191 4.87e-18 82.8
MS.gene055356.t1 MTR_7g059525 29.412 187 112 2 318 503 108 275 1.82e-17 83.2
MS.gene055356.t1 MTR_0182s0060 25.049 507 302 17 40 503 37 508 3.53e-17 84.7
MS.gene055356.t1 MTR_7g059520 30.994 171 98 3 318 487 5 156 3.59e-17 79.7
MS.gene055356.t1 MTR_7g060080 33.108 148 94 2 363 505 42 189 5.16e-17 79.7
MS.gene055356.t1 MTR_6g009600 32.593 135 67 2 318 451 23 134 1.37e-16 77.4
MS.gene055356.t1 MTR_7g446270 23.984 492 272 20 38 488 31 461 3.12e-16 81.6
MS.gene055356.t1 MTR_7g060220 23.404 470 258 14 38 488 27 413 5.22e-16 80.9
MS.gene055356.t1 MTR_7g059480 33.099 142 94 1 363 503 624 765 1.94e-15 79.7
MS.gene055356.t1 MTR_7g060840 32.000 150 91 3 367 515 287 426 2.13e-15 79.0
MS.gene055356.t1 MTR_5g086260 29.189 185 105 4 318 500 136 296 2.19e-15 77.4
MS.gene055356.t1 MTR_7g060020 34.507 142 89 3 367 505 291 431 3.22e-15 78.2
MS.gene055356.t1 MTR_5g087580 24.747 198 125 2 316 512 41 215 4.13e-15 75.1
MS.gene055356.t1 MTR_4g009340 31.176 170 104 4 36 205 42 198 7.03e-15 77.8
MS.gene055356.t1 MTR_4g009620 31.765 170 102 4 36 205 42 197 9.76e-14 73.9
MS.gene055356.t1 MTR_4g009590 27.895 190 124 4 36 225 42 218 1.41e-13 73.6
MS.gene055356.t1 MTR_4g009590 29.104 134 94 1 373 505 411 544 1.87e-11 67.0
MS.gene055356.t1 MTR_7g060160 34.014 147 83 5 367 505 263 403 1.60e-13 72.8
MS.gene055356.t1 MTR_8g042170 31.126 151 90 2 367 503 299 449 8.09e-13 70.9
MS.gene055356.t1 MTR_7g017620 28.788 198 126 6 4 200 9 192 3.02e-12 69.3
MS.gene055356.t1 MTR_7g017620 30.075 133 91 2 371 502 399 530 6.15e-11 65.1
MS.gene055356.t1 MTR_7g059810 26.266 316 170 11 184 488 158 421 3.52e-12 68.9
MS.gene055356.t1 MTR_2g036310 29.197 137 94 2 371 505 16 151 4.91e-12 64.7
MS.gene055356.t1 MTR_7g059510 29.078 141 97 2 369 506 282 422 5.63e-12 68.2
MS.gene055356.t1 MTR_7g067750 27.111 225 139 9 2 218 26 233 6.11e-12 68.6
MS.gene055356.t1 MTR_8g042830 21.386 332 201 8 184 504 124 406 1.28e-11 67.0
MS.gene055356.t1 MTR_3g466740 27.320 194 122 6 37 230 31 205 2.52e-11 66.2
MS.gene055356.t1 MTR_7g067600 27.273 176 114 3 37 209 29 193 8.05e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055356.t1 AT2G44930 29.960 494 240 9 36 508 84 492 1.27e-55 194
MS.gene055356.t1 AT3G60470 29.685 539 270 15 38 508 34 531 9.38e-55 192
MS.gene055356.t1 AT2G28580 28.921 491 244 10 36 508 41 444 3.20e-52 184
MS.gene055356.t1 AT2G28580 28.921 491 244 10 36 508 109 512 7.79e-52 185
MS.gene055356.t1 AT2G28580 28.803 493 242 11 36 508 123 526 1.09e-51 184
MS.gene055356.t1 AT2G28580 29.167 480 240 9 36 508 109 495 2.64e-51 183
MS.gene055356.t1 AT2G28580 29.046 482 238 10 36 508 123 509 3.08e-51 183
MS.gene055356.t1 AT4G31980 27.447 470 232 12 36 496 293 662 4.62e-46 171
MS.gene055356.t1 AT5G11290 25.519 482 265 15 24 503 22 411 6.68e-40 150
MS.gene055356.t1 AT1G67150 27.386 482 245 12 35 503 5 394 1.48e-39 148
MS.gene055356.t1 AT1G67150 27.386 482 245 12 35 503 5 394 1.48e-39 148
MS.gene055356.t1 AT1G67150 27.160 486 245 12 35 503 5 398 5.88e-39 147
MS.gene055356.t1 AT2G36430 24.835 455 260 11 36 488 45 419 6.16e-38 145
MS.gene055356.t1 AT3G50150 27.542 472 270 11 38 505 92 495 8.18e-38 145
MS.gene055356.t1 AT3G50170 25.819 519 304 13 2 503 69 523 2.89e-37 144
MS.gene055356.t1 AT3G47250 26.176 489 273 13 27 503 52 464 7.15e-37 142
MS.gene055356.t1 AT3G47250 26.176 489 273 13 27 503 52 464 7.15e-37 142
MS.gene055356.t1 AT3G47250 26.176 489 273 13 27 503 52 464 7.15e-37 142
MS.gene055356.t1 AT3G47210 28.412 447 213 11 25 458 82 434 3.95e-35 137
MS.gene055356.t1 AT3G50140 26.477 491 258 14 38 505 115 525 1.47e-34 137
MS.gene055356.t1 AT2G28580 27.488 422 197 11 36 437 123 455 5.76e-33 131
MS.gene055356.t1 AT3G50120 26.170 470 284 12 38 503 105 515 1.60e-32 130
MS.gene055356.t1 AT3G50130 26.652 454 269 12 38 488 141 533 1.32e-31 128
MS.gene055356.t1 AT3G50180 25.462 487 260 16 32 503 174 572 4.12e-28 118
MS.gene055356.t1 AT3G47200 25.470 479 261 13 25 488 35 432 2.29e-27 115
MS.gene055356.t1 AT3G47200 25.470 479 261 13 25 488 35 432 2.29e-27 115
MS.gene055356.t1 AT5G22540 23.226 465 257 13 36 488 31 407 5.09e-26 110
MS.gene055356.t1 AT3G44710 24.280 486 306 14 36 503 47 488 3.29e-25 109
MS.gene055356.t1 AT3G50190 23.789 475 258 13 38 503 98 477 6.62e-23 102
MS.gene055356.t1 AT5G11290 23.326 433 239 15 73 503 1 342 1.83e-22 99.4
MS.gene055356.t1 AT3G50170 29.439 214 121 5 2 205 69 262 1.37e-19 91.7
MS.gene055356.t1 AT1G65985 33.514 185 80 4 38 204 16 175 1.57e-19 91.7
MS.gene055356.t1 AT1G65985 37.903 124 76 1 368 490 304 427 3.02e-16 81.6
MS.gene055356.t1 AT1G65985 33.514 185 80 4 38 204 16 175 1.57e-19 91.7
MS.gene055356.t1 AT1G65985 37.903 124 76 1 368 490 304 427 3.02e-16 81.6
MS.gene055356.t1 AT1G67150 30.481 187 106 3 318 503 188 351 7.29e-19 88.6
MS.gene055356.t1 AT1G67150 31.694 183 94 5 35 207 5 166 4.16e-15 77.4
MS.gene055356.t1 AT5G22550 31.100 209 120 8 2 206 9 197 7.92e-19 89.7
MS.gene055356.t1 AT3G50160 31.285 179 103 4 32 210 100 258 2.41e-18 88.2
MS.gene055356.t1 AT3G50160 27.232 224 134 3 286 503 285 485 3.15e-16 81.6
MS.gene055356.t1 AT3G50150 31.429 175 99 4 38 210 92 247 1.07e-16 82.8
MS.gene055356.t1 AT3G50140 31.548 168 95 4 38 205 115 262 7.63e-16 80.1
MS.gene055356.t1 AT5G22560 26.882 186 103 4 36 207 47 213 4.19e-15 78.2
MS.gene055356.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.80e-13 70.9
MS.gene055356.t1 AT3G50190 27.717 184 110 5 38 221 98 258 6.80e-13 70.9
MS.gene055356.t1 AT3G50190 27.717 184 110 5 38 221 98 258 7.77e-13 70.5
MS.gene055356.t1 AT3G02645 32.203 118 79 1 373 489 380 497 1.53e-12 70.5
MS.gene055356.t1 AT3G44700 26.389 144 99 4 5 143 16 157 4.79e-11 63.2

Find 56 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAAGCATTATCAGAATATT+TGG 0.154201 8.2:+83521179 MS.gene055356:CDS
CTTGATACTGACATTGTTCT+AGG 0.157660 8.2:-83520958 None:intergenic
ATTAACTTTGTTACTGTTCT+TGG 0.162375 8.2:-83520734 None:intergenic
CTGCTAAACTTAACTCTTCT+AGG 0.239207 8.2:-83519866 None:intergenic
ACGTGAAACTAAGCTTGTTT+TGG 0.326591 8.2:+83520499 MS.gene055356:CDS
GACATTGTTCTAGGGCAATA+AGG 0.326811 8.2:-83520949 None:intergenic
GAAACATAATTGCATATATA+AGG 0.329067 8.2:-83520986 None:intergenic
GACTTTGTAGTTCTTGATCA+TGG 0.348123 8.2:-83520069 None:intergenic
ACCATTTCAAAGCGCGTCTT+AGG 0.348316 8.2:+83520879 MS.gene055356:CDS
TCTTTATTTCCAAGGTGAAT+TGG 0.350401 8.2:-83519969 None:intergenic
ATCAAATCAGTGAAATGTTT+AGG 0.353279 8.2:-83520647 None:intergenic
TTACCTTCCAGCTGATTTAA+CGG 0.361070 8.2:+83520679 MS.gene055356:CDS
AACATTTCACTGATTTGATA+AGG 0.390830 8.2:+83520651 MS.gene055356:CDS
ACTCCTCAATTAATCTCAAT+TGG 0.392658 8.2:+83519945 MS.gene055356:CDS
GTAACAAAGTTAATAGATTC+TGG 0.396787 8.2:+83520743 MS.gene055356:CDS
AAGAAACCGTTCATGGAAAT+CGG 0.400354 8.2:+83520214 MS.gene055356:CDS
GAAGTGGCAGTGCTTGTTAA+TGG 0.401978 8.2:+83521097 MS.gene055356:CDS
ATAGACGCTCATAGAAGAAA+TGG 0.406927 8.2:-83520028 None:intergenic
TCCTAAGACGCGCTTTGAAA+TGG 0.424576 8.2:-83520880 None:intergenic
TCTAAATCCGTTAAATCAGC+TGG 0.442093 8.2:-83520686 None:intergenic
AGCAATAACCATAGGTTTCA+AGG 0.443493 8.2:+83520623 MS.gene055356:CDS
CAGAGAAAATAACTCAGAAA+TGG 0.447228 8.2:-83520824 None:intergenic
ATCTGAAACTGAATATGAAA+TGG 0.454211 8.2:+83519818 MS.gene055356:CDS
GTTTAGGACCTTGAAACCTA+TGG 0.455366 8.2:-83520631 None:intergenic
ACAAGTTGATGTTGATTTGT+TGG 0.455972 8.2:+83521033 MS.gene055356:CDS
AGAGCTAGTTCTACTTTGGT+TGG 0.457619 8.2:+83521250 MS.gene055356:CDS
GGAAGTGATTGTGCATGAAA+TGG 0.461128 8.2:+83521063 MS.gene055356:CDS
GGACCAATTGAGATTAATTG+AGG 0.464532 8.2:-83519948 None:intergenic
TTGGAGAGCTAGTTCTACTT+TGG 0.466290 8.2:+83521246 MS.gene055356:CDS
AGTGGCTTAATTGGTGATGT+TGG 0.493716 8.2:+83520554 MS.gene055356:CDS
GTTGAAGTTCTTTATTTCCA+AGG 0.495312 8.2:-83519977 None:intergenic
TCTTAGGATTCCGCAATTGA+AGG 0.495495 8.2:+83520895 MS.gene055356:CDS
AGCAGATTGTAGCATCTACA+AGG 0.504878 8.2:+83519884 MS.gene055356:CDS
ATTACATTCTAACACAAGCT+TGG 0.511928 8.2:+83520300 MS.gene055356:CDS
TGTTGATTTGTTGGTGGAGA+AGG 0.512953 8.2:+83521042 MS.gene055356:CDS
TTGATACTGACATTGTTCTA+GGG 0.522905 8.2:-83520957 None:intergenic
ATGTTTCAATCTAAATGACT+TGG 0.523292 8.2:-83520270 None:intergenic
GAAGTGATTGTGCATGAAAT+GGG 0.523677 8.2:+83521064 MS.gene055356:CDS
TTAACGGATTTAGAAAAGAG+TGG 0.543465 8.2:+83520695 MS.gene055356:CDS
CACCAACCACAATGCAGCCA+TGG 0.546124 8.2:-83521209 None:intergenic
TGGTTCAAACATGAAAATGA+AGG 0.548134 8.2:-83520860 None:intergenic
TCAATTGGTCCAATTCACCT+TGG 0.558480 8.2:+83519960 MS.gene055356:CDS
TTAATTGGTGATGTTGGTAG+TGG 0.564871 8.2:+83520560 MS.gene055356:CDS
ACCACAATGCAGCCATGGTA+CGG 0.571593 8.2:-83521204 None:intergenic
AGTTGATGTTGATTTGTTGG+TGG 0.572996 8.2:+83521036 MS.gene055356:CDS
ATGTATCCGATTTCCATGAA+CGG 0.580945 8.2:-83520220 None:intergenic
TGGTCTTTGTAAACATGTTG+TGG 0.582048 8.2:+83521117 MS.gene055356:CDS
AATCTATGAGCAATAACCAT+AGG 0.583238 8.2:+83520615 MS.gene055356:CDS
GGCTCAGCAAAAGCATCACA+AGG 0.605591 8.2:+83520321 MS.gene055356:CDS
TACCATGGCTGCATTGTGGT+TGG 0.611964 8.2:+83521207 MS.gene055356:CDS
AATCCGTTAAATCAGCTGGA+AGG 0.622325 8.2:-83520682 None:intergenic
AATGGGAAGTGATAAAGAAG+TGG 0.638138 8.2:+83521081 MS.gene055356:CDS
GAATATTTGGAACCGTACCA+TGG 0.643141 8.2:+83521192 MS.gene055356:CDS
GTGTGATCAACCTTCAATTG+CGG 0.689659 8.2:-83520905 None:intergenic
GCTCAGCAAAAGCATCACAA+GGG 0.717992 8.2:+83520322 MS.gene055356:CDS
ACCGTACCATGGCTGCATTG+TGG 0.722473 8.2:+83521203 MS.gene055356:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGCATTATCAGAATATT+TGG + chr8.2:83521179-83521198 MS.gene055356:CDS 20.0%
!! GAAACATAATTGCATATATA+AGG - chr8.2:83520989-83521008 None:intergenic 20.0%
!!! AAATTTTTCTTTGCTTATGT+TGG - chr8.2:83520147-83520166 None:intergenic 20.0%
!!! AAGAAATATTATTTTGTGAG+TGG + chr8.2:83520536-83520555 MS.gene055356:CDS 20.0%
!!! AATTTTTCTTTGCTTATGTT+GGG - chr8.2:83520146-83520165 None:intergenic 20.0%
!!! TTTATCAGAATGTTTTTTCT+TGG - chr8.2:83520597-83520616 None:intergenic 20.0%
! ATCAAATCAGTGAAATGTTT+AGG - chr8.2:83520650-83520669 None:intergenic 25.0%
! ATGTTTCAATCTAAATGACT+TGG - chr8.2:83520273-83520292 None:intergenic 25.0%
! ATTAACTTTGTTACTGTTCT+TGG - chr8.2:83520737-83520756 None:intergenic 25.0%
! CATAAGCAAAGAAAAATTTG+TGG + chr8.2:83520148-83520167 MS.gene055356:CDS 25.0%
! GTAACAAAGTTAATAGATTC+TGG + chr8.2:83520743-83520762 MS.gene055356:CDS 25.0%
!! ATCTGAAACTGAATATGAAA+TGG + chr8.2:83519818-83519837 MS.gene055356:CDS 25.0%
!! ATTTGTGGAAACAATTTTGT+TGG + chr8.2:83520163-83520182 MS.gene055356:CDS 25.0%
!! CAAGATCAAGAAAACTTTTA+TGG - chr8.2:83520436-83520455 None:intergenic 25.0%
!!! AACATTTCACTGATTTGATA+AGG + chr8.2:83520651-83520670 MS.gene055356:CDS 25.0%
AATCTATGAGCAATAACCAT+AGG + chr8.2:83520615-83520634 MS.gene055356:CDS 30.0%
ACTCCTCAATTAATCTCAAT+TGG + chr8.2:83519945-83519964 MS.gene055356:CDS 30.0%
AGATTCATCAGCACAAAAAA+AGG - chr8.2:83520374-83520393 None:intergenic 30.0%
ATTACATTCTAACACAAGCT+TGG + chr8.2:83520300-83520319 MS.gene055356:CDS 30.0%
CAATGCAACAACACAAAAAT+AGG + chr8.2:83520000-83520019 MS.gene055356:CDS 30.0%
CAGAGAAAATAACTCAGAAA+TGG - chr8.2:83520827-83520846 None:intergenic 30.0%
TGGTTCAAACATGAAAATGA+AGG - chr8.2:83520863-83520882 None:intergenic 30.0%
TTGATACTGACATTGTTCTA+GGG - chr8.2:83520960-83520979 None:intergenic 30.0%
! ACACAACAGAATGTGTTTTA+AGG + chr8.2:83520924-83520943 MS.gene055356:CDS 30.0%
! GTTGAAGTTCTTTATTTCCA+AGG - chr8.2:83519980-83519999 None:intergenic 30.0%
! TATTTTGTGAGTGGCTTAAT+TGG + chr8.2:83520545-83520564 MS.gene055356:CDS 30.0%
! TCTTTATTTCCAAGGTGAAT+TGG - chr8.2:83519972-83519991 None:intergenic 30.0%
! TTTTGTTAAGAAACCGTTCA+TGG + chr8.2:83520207-83520226 MS.gene055356:CDS 30.0%
!! AAGCTTCTTGTTTCACTTTT+CGG - chr8.2:83519923-83519942 None:intergenic 30.0%
!! ACAAGTTGATGTTGATTTGT+TGG + chr8.2:83521033-83521052 MS.gene055356:CDS 30.0%
!! TTAACGGATTTAGAAAAGAG+TGG + chr8.2:83520695-83520714 MS.gene055356:CDS 30.0%
!!! CTATTTTTGTGTTGTTGCAT+TGG - chr8.2:83520002-83520021 None:intergenic 30.0%
AAGAAACCGTTCATGGAAAT+CGG + chr8.2:83520214-83520233 MS.gene055356:CDS 35.0%
AATGGGAAGTGATAAAGAAG+TGG + chr8.2:83521081-83521100 MS.gene055356:CDS 35.0%
AGCAATAACCATAGGTTTCA+AGG + chr8.2:83520623-83520642 MS.gene055356:CDS 35.0%
ATAGACGCTCATAGAAGAAA+TGG - chr8.2:83520031-83520050 None:intergenic 35.0%
ATGTATCCGATTTCCATGAA+CGG - chr8.2:83520223-83520242 None:intergenic 35.0%
CTGCTAAACTTAACTCTTCT+AGG - chr8.2:83519869-83519888 None:intergenic 35.0%
CTTGATACTGACATTGTTCT+AGG - chr8.2:83520961-83520980 None:intergenic 35.0%
GAAGTGATTGTGCATGAAAT+GGG + chr8.2:83521064-83521083 MS.gene055356:CDS 35.0%
GACTTTGTAGTTCTTGATCA+TGG - chr8.2:83520072-83520091 None:intergenic 35.0%
GGACCAATTGAGATTAATTG+AGG - chr8.2:83519951-83519970 None:intergenic 35.0%
TCTAAATCCGTTAAATCAGC+TGG - chr8.2:83520689-83520708 None:intergenic 35.0%
TGGTCTTTGTAAACATGTTG+TGG + chr8.2:83521117-83521136 MS.gene055356:CDS 35.0%
! TTACCTTCCAGCTGATTTAA+CGG + chr8.2:83520679-83520698 MS.gene055356:CDS 35.0%
!! ACGTGAAACTAAGCTTGTTT+TGG + chr8.2:83520499-83520518 MS.gene055356:CDS 35.0%
!! AGTTGATGTTGATTTGTTGG+TGG + chr8.2:83521036-83521055 MS.gene055356:CDS 35.0%
!! CTGAGTTATTTTCTCTGCTT+AGG + chr8.2:83520830-83520849 MS.gene055356:CDS 35.0%
!! TGGTGTATTTTAGAGATGCT+TGG + chr8.2:83521227-83521246 MS.gene055356:CDS 35.0%
!! TTAATTGGTGATGTTGGTAG+TGG + chr8.2:83520560-83520579 MS.gene055356:CDS 35.0%
!!! CTTCTTTTTTGTCGTCGTTA+GGG - chr8.2:83520412-83520431 None:intergenic 35.0%
!!! GTGAGTTTTGAGAAAGTTGT+GGG + chr8.2:83520767-83520786 MS.gene055356:CDS 35.0%
!!! TCTTCTTTTTTGTCGTCGTT+AGG - chr8.2:83520413-83520432 None:intergenic 35.0%
!!! TGAGTTTTGAGAAAGTTGTG+GGG + chr8.2:83520768-83520787 MS.gene055356:CDS 35.0%
!!! TGTGAGTTTTGAGAAAGTTG+TGG + chr8.2:83520766-83520785 MS.gene055356:CDS 35.0%
AATCCGTTAAATCAGCTGGA+AGG - chr8.2:83520685-83520704 None:intergenic 40.0%
AGCAGATTGTAGCATCTACA+AGG + chr8.2:83519884-83519903 MS.gene055356:CDS 40.0%
GGAAGTGATTGTGCATGAAA+TGG + chr8.2:83521063-83521082 MS.gene055356:CDS 40.0%
GTGTGATCAACCTTCAATTG+CGG - chr8.2:83520908-83520927 None:intergenic 40.0%
TCAATTGGTCCAATTCACCT+TGG + chr8.2:83519960-83519979 MS.gene055356:CDS 40.0%
TCTTAGGATTCCGCAATTGA+AGG + chr8.2:83520895-83520914 MS.gene055356:CDS 40.0%
! CACAAGGGACTTGATTTTGT+TGG + chr8.2:83520337-83520356 MS.gene055356:CDS 40.0%
! GAATATTTGGAACCGTACCA+TGG + chr8.2:83521192-83521211 MS.gene055356:CDS 40.0%
! GTTTAGGACCTTGAAACCTA+TGG - chr8.2:83520634-83520653 None:intergenic 40.0%
!! AGAGCTAGTTCTACTTTGGT+TGG + chr8.2:83521250-83521269 MS.gene055356:CDS 40.0%
!! AGTGGCTTAATTGGTGATGT+TGG + chr8.2:83520554-83520573 MS.gene055356:CDS 40.0%
!! GACATTGTTCTAGGGCAATA+AGG - chr8.2:83520952-83520971 None:intergenic 40.0%
!! TGTTGATTTGTTGGTGGAGA+AGG + chr8.2:83521042-83521061 MS.gene055356:CDS 40.0%
!! TTCACTTTTCGGAGATTGTG+AGG - chr8.2:83519912-83519931 None:intergenic 40.0%
!! TTGGAGAGCTAGTTCTACTT+TGG + chr8.2:83521246-83521265 MS.gene055356:CDS 40.0%
!!! GTTGGATGCTGTTTTCATCA+TGG + chr8.2:83520181-83520200 MS.gene055356:CDS 40.0%
ACCATTTCAAAGCGCGTCTT+AGG + chr8.2:83520879-83520898 MS.gene055356:CDS 45.0%
! GAAGTGGCAGTGCTTGTTAA+TGG + chr8.2:83521097-83521116 MS.gene055356:CDS 45.0%
!! GCTCAGCAAAAGCATCACAA+GGG + chr8.2:83520322-83520341 MS.gene055356:CDS 45.0%
!! TCCTAAGACGCGCTTTGAAA+TGG - chr8.2:83520883-83520902 None:intergenic 45.0%
ACCACAATGCAGCCATGGTA+CGG - chr8.2:83521207-83521226 None:intergenic 50.0%
TACCATGGCTGCATTGTGGT+TGG + chr8.2:83521207-83521226 MS.gene055356:CDS 50.0%
!! GGCTCAGCAAAAGCATCACA+AGG + chr8.2:83520321-83520340 MS.gene055356:CDS 50.0%
ACCGTACCATGGCTGCATTG+TGG + chr8.2:83521203-83521222 MS.gene055356:CDS 55.0%
CACCAACCACAATGCAGCCA+TGG - chr8.2:83521212-83521231 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 83519786 83521333 83519786 ID=MS.gene055356
chr8.2 mRNA 83519786 83521333 83519786 ID=MS.gene055356.t1;Parent=MS.gene055356
chr8.2 exon 83519786 83521333 83519786 ID=MS.gene055356.t1.exon1;Parent=MS.gene055356.t1
chr8.2 CDS 83519786 83521333 83519786 ID=cds.MS.gene055356.t1;Parent=MS.gene055356.t1
Gene Sequence

>MS.gene055356

ATGGCACATGCTAATACTTCTGTTGATGCTTTATCTGAAACTGAATATGAAATGGTGAAACACATCATTGACGTTGAAGTCCTAGAAGAGTTAAGTTTAGCAGATTGTAGCATCTACAAGGTTCCTCACAATCTCCGAAAAGTGAAACAAGAAGCTTACACTCCTCAATTAATCTCAATTGGTCCAATTCACCTTGGAAATAAAGAACTTCAACCAATGCAACAACACAAAAATAGGTATTTCCATTTCTTCTATGAGCGTCTATCTCAATTCAATCAACAATCCATGATCAAGAACTACAAAGTCTATCTTGAAAACAAAGAACAAGAAATAAGAAAATGTTATGCAGAGAAATTTCCCAACATAAGCAAAGAAAAATTTGTGGAAACAATTTTGTTGGATGCTGTTTTCATCATGGAGCTTTTGTTAAGAAACCGTTCATGGAAATCGGATACATCAAAACATGAACATGAATACAAGCAATCCAAGTCATTTAGATTGAAACATAGTGATGATTACATTCTAACACAAGCTTGGCTCAGCAAAAGCATCACAAGGGACTTGATTTTGTTGGAAAATCAGATACCTTTTTTTGTGCTGATGAATCTTTACGATACTGTCGTCCCTAACGACGACAAAAAAGAAGACCATAAAAGTTTTCTTGATCTTGCACTTGAGTATTTTGCATTCTACGACACACAGAAATCGTCATCACGTGAAACTAAGCTTGTTTTGGATAAGAATCAGACAAAGAAATATTATTTTGTGAGTGGCTTAATTGGTGATGTTGGTAGTGGTAATTCAGTTTCCAAGAAAAAACATTCTGATAAATCTATGAGCAATAACCATAGGTTTCAAGGTCCTAAACATTTCACTGATTTGATAAGGTTTTTTTACCTTCCAGCTGATTTAACGGATTTAGAAAAGAGTGGTTGTTCTCATACTTTTCCAAGAACAGTAACAAAGTTAATAGATTCTGGTGTGAGTTTTGAGAAAGTTGTGGGGAGAAGATTGCTAGAAATAACATTTGAGAAGAAACCATTTCTGAGTTATTTTCTCTGCTTAGGTTGTTTACCTTCATTTTCATGTTTGAACCATTTCAAAGCGCGTCTTAGGATTCCGCAATTGAAGGTTGATCACACAACAGAATGTGTTTTAAGGAACCTTATTGCCCTAGAACAATGTCAGTATCAAGAACAACCTTATATATGCAATTATGTTTCACTTGTTGATTCTCTTATACATACACAAGTTGATGTTGATTTGTTGGTGGAGAAGGAAGTGATTGTGCATGAAATGGGAAGTGATAAAGAAGTGGCAGTGCTTGTTAATGGTCTTTGTAAACATGTTGTGGTGAATTCAACTTGTTACTATGATATTATTAATAAGCTTAATAAGCATTATCAGAATATTTGGAACCGTACCATGGCTGCATTGTGGTTGGTGTATTTTAGAGATGCTTGGAGAGCTAGTTCTACTTTGGTTGGAATTGCTTTTCTTGTTTACACAGCATTCAACTTTGTACGTCTTGCTAGAATTCTCTTCTAA

Protein sequence

>MS.gene055356.t1

MAHANTSVDALSETEYEMVKHIIDVEVLEELSLADCSIYKVPHNLRKVKQEAYTPQLISIGPIHLGNKELQPMQQHKNRYFHFFYERLSQFNQQSMIKNYKVYLENKEQEIRKCYAEKFPNISKEKFVETILLDAVFIMELLLRNRSWKSDTSKHEHEYKQSKSFRLKHSDDYILTQAWLSKSITRDLILLENQIPFFVLMNLYDTVVPNDDKKEDHKSFLDLALEYFAFYDTQKSSSRETKLVLDKNQTKKYYFVSGLIGDVGSGNSVSKKKHSDKSMSNNHRFQGPKHFTDLIRFFYLPADLTDLEKSGCSHTFPRTVTKLIDSGVSFEKVVGRRLLEITFEKKPFLSYFLCLGCLPSFSCLNHFKARLRIPQLKVDHTTECVLRNLIALEQCQYQEQPYICNYVSLVDSLIHTQVDVDLLVEKEVIVHEMGSDKEVAVLVNGLCKHVVVNSTCYYDIINKLNKHYQNIWNRTMAALWLVYFRDAWRASSTLVGIAFLVYTAFNFVRLARILF