AlfalfaGEDB | MS.gene06714

M. sativa cultivar XinJiangDaYe / MS.gene06714

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF00240.26 PF00454.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06714.t1	XP_003602240.2	96.7	579	19	0	1	579	1	579	0.00E+00	1136.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06714.t1	Q9FNF8	61.4	557	203	3	19	575	25	569	2.6e-199	696.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06714.t1	G7J6V9	96.7	579	19	0	1	579	1	579	0.0e+00	1136.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052611	MS.gene06714	0.80636	8.54E-50	-1.69E-46
MS.gene057444	MS.gene06714	0.823664	1.23E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06714.t1	MTR_3g091400	96.718	579	19	0	1	579	1	579	0.0	1154
MS.gene06714.t1	MTR_8g099565	59.478	575	203	6	25	577	25	591	0.0	670
MS.gene06714.t1	MTR_8g027610	57.895	570	216	6	19	575	30	588	0.0	650
MS.gene06714.t1	MTR_5g009120	56.432	583	237	8	1	574	3	577	0.0	635
MS.gene06714.t1	MTR_7g117395	56.890	566	221	7	26	578	36	591	0.0	624
MS.gene06714.t1	MTR_8g066090	41.156	294	153	5	247	534	146	425	1.59e-63	220
MS.gene06714.t1	MTR_0009s0120	39.262	298	157	5	247	534	148	431	9.95e-60	210
MS.gene06714.t1	MTR_7g017360	40.134	299	150	8	248	534	145	426	6.53e-57	202
MS.gene06714.t1	MTR_7g116360	32.484	157	102	4	22	177	72	225	9.84e-16	77.0
MS.gene06714.t1	MTR_7g116360	33.562	146	94	3	32	177	7	149	1.80e-15	76.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06714.t1	AT5G24240	61.400	557	203	3	19	575	25	569	0.0	701
MS.gene06714.t1	AT5G24240	61.400	557	203	3	19	575	25	569	0.0	701
MS.gene06714.t1	AT2G46500	60.536	560	199	5	16	575	24	561	0.0	685
MS.gene06714.t1	AT2G46500	60.536	560	199	5	16	575	24	561	0.0	685
MS.gene06714.t1	AT2G46500	55.443	395	155	4	16	410	24	397	5.02e-144	423
MS.gene06714.t1	AT2G40850	37.037	324	180	5	246	559	105	414	4.98e-61	212
MS.gene06714.t1	AT2G03890	39.394	297	157	5	247	534	151	433	2.47e-60	212
MS.gene06714.t1	AT3G56600	37.107	318	170	7	246	550	85	385	2.34e-59	206
MS.gene06714.t1	AT3G56600	37.107	318	170	7	246	550	88	388	2.57e-59	206
MS.gene06714.t1	AT3G56600	37.107	318	170	7	246	550	88	388	2.57e-59	206

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Find 148 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAGTCCCTCATATG+AGG	0.496194	3.3:+76270404	None:intergenic
AAACCAATTCGATCTTCAGA+GGG	0.648137	3.3:-76269675	MS.gene06714:CDS
AAAGAAATTCTCTAGTCGAT+TGG	0.496957	3.3:+76269790	None:intergenic
AAAGGCACACGAGTAGGGCA+AGG	0.653256	3.3:-76269516	MS.gene06714:CDS
AAATCTTGTGTTGGTGATTA+TGG	0.244958	3.3:-76270230	MS.gene06714:CDS
AACCATGATCAATTGGAATA+AGG	0.304154	3.3:+76269142	None:intergenic
AACTCCAAATCCTTCTCAAC+TGG	0.393740	3.3:+76269909	None:intergenic
AACTGGTCCACAGCTAAATT+TGG	0.266556	3.3:+76269852	None:intergenic
AACTTCCGGCGGAATGCGCC+CGG	0.461655	3.3:-76268197	MS.gene06714:CDS
AAGAACTAAACCAGTTGAGA+AGG	0.564865	3.3:-76269919	MS.gene06714:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAATTCTCTAGTCGAT+TGG	+	chr3.3:76268649-76268668	None:intergenic	30.0%
AACCATGATCAATTGGAATA+AGG	+	chr3.3:76269297-76269316	None:intergenic	30.0%
AACGGTTCATTAAACTTTAG+AGG	+	chr3.3:76269343-76269362	None:intergenic	30.0%
ACTAGGAAAAATTCAACCAA+AGG	+	chr3.3:76269847-76269866	None:intergenic	30.0%
ATATCATAACAATGAGGAGA+AGG	-	chr3.3:76269000-76269019	MS.gene06714:intron	30.0%
ATGTAACCTTAATTAGTTCC+TGG	+	chr3.3:76268718-76268737	None:intergenic	30.0%
ATGTGGTGATTATTGTAACA+TGG	-	chr3.3:76269980-76269999	MS.gene06714:CDS	30.0%
CATGTTAACAGTTATTCTAG+GGG	+	chr3.3:76269458-76269477	None:intergenic	30.0%
GAAACATTCTTATAACCTTC+AGG	+	chr3.3:76269085-76269104	None:intergenic	30.0%
GATTATTGTAACATGGAAGA+TGG	-	chr3.3:76269987-76270006	MS.gene06714:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	76267972	76270486	76267972	ID=MS.gene06714
chr3.3	mRNA	76267972	76270486	76267972	ID=MS.gene06714.t1;Parent=MS.gene06714
chr3.3	exon	76269125	76270486	76269125	ID=MS.gene06714.t1.exon1;Parent=MS.gene06714.t1
chr3.3	CDS	76269125	76270486	76269125	ID=cds.MS.gene06714.t1;Parent=MS.gene06714.t1
chr3.3	exon	76267972	76268349	76267972	ID=MS.gene06714.t1.exon2;Parent=MS.gene06714.t1
chr3.3	CDS	76267972	76268349	76267972	ID=cds.MS.gene06714.t1;Parent=MS.gene06714.t1

Gene Sequence

>MS.gene06714

ATGGCTTGTTTGGTACTTCATCCAATGCATGAAAATGGCGAATTTACCAGTAGTTTTAGTCCTCATATGAGGGACTCAATTTTGATTTACCTAACTGTTGGTGGATCTGTGATTCCCATGCATATTTTGGAGACGGATTCCATTGCTTCGGTGAAGCTGAGAATTCAAACCTTAGAAGGATTTTTTGTAAAGAAACTGAAACTGGTTTTTGAAGGGAAGGAATTGGCTCATAACAAATCTTGTGTTGGTGATTATGGTGTTGCTGATGGAAATGTGTTGCACTTAGTGCTAAGGCTTTCTGATCTTAAAGCTATTACTGTTAGGACTCTATGTGGAAAGGAGTTTGGGTTTTATGTTGAGAAGACTAGGAATGTGGGTTATGTGAAGCAGCAGATTGCAAAGAAAGGGCGAGGGGTCTTCGATCTTGCAGATCAAGAATTAGTATGGGAGGGTGAGGCACTTGAAGATCAGAGACTTATTGAGGACATCTGTAACGACAACGACGCTGTGATTCATTTGTTGGTCAGGATATCAGATATCAAGGTAAGAACTAAACCAGTTGAGAAGGATTTGGAGTTATCAATTGAGGCATTGTTTGCACATGATACAGTGCCAAATTTAGCTGTGGACCAGTTAGGGCCAGTGTCTATAACAAACAAGGTCATGAAGAGGAACCAATCGACTAGAGAATTTCTTTTGGAACCAATTTTTAATAATTCCAATATCAAAATTCCACCAGTGGTCCAGGAACTAATTAAGGTTACATTAGAGGGGTTAGAGAAAGGCCGTAAACCAATTCGATCTTCAGAGGGATCAGGGGGAACTTATCTCATGCAAGATTCATCTGGTTCAAAATATGTTTCAATTTTCAAGCCTACTGATGAGGAGCCAATGGCATTTAATAATCCCCGAGGATTACCTATCTCTGTGGATGGTGAAGGGTTAAAGAAAGGCACACGAGTAGGGCAAGGTGCATTGAGAGAAGTTGCAGCTTACATTTTAGATCATCCGAGGAAAGGAATTCGCTCATATCATAACAATGAGGAGAAGGGGTTTGCTGGAGTTCCACCAACTGTTATGGTCAGATGCATGCATGAAGGGTTCCACCATCCTGAAGGTTATAAGAATGTTTCAAGTAATGTAAAAATAGGATCACTTCAGATGTTTATGAGGAACATTGGAAGCTGTGAAGACATGGGCCCTAGAGCATTTCCGGTGGAAGAGGTACACAAGATCTCTGTGCTGGATATGAGGTTGGTAAATGCAGATAGACACGCTGGGAACATTTTGGTTGCCAAGAGTGGTGAAGATGGTCCAATTGTCCTTATTCCAATTGATCATGGTTATTGCCTTCCCGAGAGCGTGAGTCCTCTAAAGTTTAATGAACCGTTTCCCCCTTTTTTTTATTTGTGAAGATAATTTAAGCTGATGTTGTTTTGGGCAACTTGGCAGTGTCTTTCTTAGATCAGCTTCTCATGCTTATCCCCTAGAATAACTGTTAACATGCAGCAAAATTGTGGATGCAGTTCTCTGTTTTATATTTGCCACAATTCTCATTTTTATTTGCTTAGCAGATTTGTGTCACATTCAGATGATAATGATTTTTCTCAGATTGCCATTGGTTTTAGACTGGATAAACCGTAGGGTTTTGACTCTTCTTTAGTTCCACTACACTGCTTACTATCTTATAGTTTTGATATTGATTACTTTTACATAAGGAATTTTTATTATTGCTCATGATCCCTGTTGAACCTCTCTAATACCTTCGTAGCAACAATATTGCAATCATTTCCGGCAATGCTCGTCATTTATACTTCAAAACCTGTTGAATACTCTACACTTGATTTCTATCATCTTTGCACACTCTCTATACCTTTGGTTGAATTTTTCCTAGTCCTTCCTGATAATATGTACAAATATCTGCGTAATTGAGTATGAATCATGTTGTTCTATCAAATATATAAGTTGCCATTATAAATGCCTTTCCAAGTTAGTATAAAATTAATCTATGTGGTGATTATTGTAACATGGAAGATGGAGCAATAGTTATCATCAACTCTTCTTTCTTTGTTGTTGCTATTCTTAAAGGGGCTCATATATGAAATTTCTAAAGGCTGGTTTGTCCCCCATTTTGCAGTTTGAAGACTGCACTTTTGACTGGTTATACTGGCCACAAGCTCAAGAGCCTTACTCGCTAGACACCACTGAGTACATAAAATCTCTGGATGCAGAAGAAGATATTAAGCTTTTGAAGTCTCATGGATGGGAACTTCCGGCGGAATGCGCCCGGATTCTTCGTATATCAACCATGCTTCTTCAGAAAGGTGCAGAAAAAGGACTCACTCCTTTCTCCATTGGAAGCATCATGTGTCGAGAAACACTGAAGAAAAAGTCTGTCATTGAGCAGATTATTCACAAAGCAGAGGAAGCTGCACTTCCTGGAACAAGTGAAGCTGAATTCCTTGATCTTGTTTCAGTGATCATGGATAATCATTTAGAAGGGCTATTTCCATGA

Protein sequence

>MS.gene06714.t1

MACLVLHPMHENGEFTSSFSPHMRDSILIYLTVGGSVIPMHILETDSIASVKLRIQTLEGFFVKKLKLVFEGKELAHNKSCVGDYGVADGNVLHLVLRLSDLKAITVRTLCGKEFGFYVEKTRNVGYVKQQIAKKGRGVFDLADQELVWEGEALEDQRLIEDICNDNDAVIHLLVRISDIKVRTKPVEKDLELSIEALFAHDTVPNLAVDQLGPVSITNKVMKRNQSTREFLLEPIFNNSNIKIPPVVQELIKVTLEGLEKGRKPIRSSEGSGGTYLMQDSSGSKYVSIFKPTDEEPMAFNNPRGLPISVDGEGLKKGTRVGQGALREVAAYILDHPRKGIRSYHNNEEKGFAGVPPTVMVRCMHEGFHHPEGYKNVSSNVKIGSLQMFMRNIGSCEDMGPRAFPVEEVHKISVLDMRLVNADRHAGNILVAKSGEDGPIVLIPIDHGYCLPESFEDCTFDWLYWPQAQEPYSLDTTEYIKSLDAEEDIKLLKSHGWELPAECARILRISTMLLQKGAEKGLTPFSIGSIMCRETLKKKSVIEQIIHKAEEAALPGTSEAEFLDLVSVIMDNHLEGLFP