AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene057444


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 136 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAATCCAGCAACTATTTA+TGG 0.069649 2.4:-46862964 None:intergenic
AGAAAGCACTTGGTCTTATT+AGG 0.215397 2.4:-46862819 None:intergenic
AAGGAGTTCTATTCTGAAAT+TGG 0.237633 2.4:+46863708 MS.gene057444:CDS
TTGCAGTTAAGAGATTAAAA+AGG 0.259648 2.4:+46863667 MS.gene057444:CDS
AAGAGTGACGTTTATAGTTT+TGG 0.282002 2.4:+46864799 MS.gene057444:CDS
GTTTATGAGTTTGTAGCTAA+TGG 0.285632 2.4:+46863807 MS.gene057444:CDS
AGCATCATTCGCATCACTTC+AGG 0.312381 2.4:+46862908 MS.gene057444:CDS
TGAACAACGTGTGACATTCT+AGG 0.318462 2.4:-46865054 None:intergenic
GAACCGGACAATTCTGTCTT+AGG 0.336637 2.4:+46863096 MS.gene057444:CDS
CTAATGGGCCCTTAGATAAA+TGG 0.351205 2.4:+46863823 MS.gene057444:CDS
GTGATGTAGCCATTTATCTA+AGG 0.359817 2.4:-46863832 None:intergenic
GGCAAGCTTTAAGAGGAAAA+AGG 0.361076 2.4:+46863689 MS.gene057444:CDS
ATATAAGGATCCAAGAGTTC+AGG 0.364706 2.4:-46864934 None:intergenic
GGAGTTTGGAGCACACCTTA+TGG 0.365447 2.4:+46864660 MS.gene057444:CDS
GAGACATGTTGTAATAAATA+TGG 0.371184 2.4:+46862876 MS.gene057444:CDS
AACATTAGCCAAAGGGAATA+TGG 0.372680 2.4:-46863057 None:intergenic
TTTATGAGTTTGTAGCTAAT+GGG 0.377084 2.4:+46863808 MS.gene057444:CDS
GACATTCTAGGGCGCATAGA+AGG 0.377991 2.4:-46865042 None:intergenic
ATGCCCAAATGGTTGGGTTA+TGG 0.380103 2.4:+46862794 MS.gene057444:CDS
CCACTTAATTGTACCGGAAC+CGG 0.382108 2.4:+46863080 MS.gene057444:CDS
CAACATTAGCAGTAGTTGTA+TGG 0.382483 2.4:+46863445 MS.gene057444:CDS
CGCTTCATATGGCACAAACT+TGG 0.386602 2.4:-46864695 None:intergenic
CCCATCACAACCACCAGGTT+TGG 0.389287 2.4:-46863753 None:intergenic
GAAAGCACTTGGTCTTATTA+GGG 0.398585 2.4:-46862818 None:intergenic
AAGACAGAATTGTCCGGTTC+CGG 0.400139 2.4:-46863093 None:intergenic
GGTCCATAACCCAACCATTT+GGG 0.401462 2.4:-46862797 None:intergenic
GAGTTTGGAGCACACCTTAT+GGG 0.406213 2.4:+46864661 MS.gene057444:CDS
GGGGAGGTCGCAGCTTAGAT+TGG 0.408202 2.4:+46863862 MS.gene057444:CDS
GTGCTGCTGGACGAGGAGTT+TGG 0.414569 2.4:+46864646 MS.gene057444:CDS
GTAGATGAGGAAGATATATA+AGG 0.419173 2.4:-46864949 None:intergenic
AGACAAGGTCAACCACCTTC+TGG 0.419954 2.4:-46864999 None:intergenic
GGGTCCATAACCCAACCATT+TGG 0.423562 2.4:-46862798 None:intergenic
CTCTCATGCATCGCTTCATA+TGG 0.423953 2.4:-46864706 None:intergenic
TCTTTGTTGTAAGCTCGTTT+CGG 0.431786 2.4:-46864780 None:intergenic
CCAAGTGCTTTCTCCATGTT+GGG 0.434270 2.4:+46862829 MS.gene057444:CDS
GAATAAGTCCATATTCCCTT+TGG 0.434737 2.4:+46863049 MS.gene057444:CDS
AGTTCTATTCTGAAATTGGC+AGG 0.439600 2.4:+46863712 MS.gene057444:CDS
AGTGAAGGAAACCGCCTTGT+TGG 0.452771 2.4:+46863591 MS.gene057444:CDS
CTACTACTCGAAATAGTTAG+TGG 0.456858 2.4:+46864826 MS.gene057444:CDS
GTTGGCAGAGTATATTTGAA+TGG 0.459965 2.4:+46864881 MS.gene057444:CDS
GGAGCACACCTTATGGGTGT+TGG 0.462484 2.4:+46864667 MS.gene057444:CDS
ACCAAGTGCTTTCTCCATGT+TGG 0.466801 2.4:+46862828 MS.gene057444:CDS
GTGAATCCATAAATAGTTGC+TGG 0.473692 2.4:+46862958 MS.gene057444:CDS
TTACCACTGCAAGGATGATA+AGG 0.474079 2.4:-46863404 None:intergenic
TCGAGCTAGTAATGTGCTGC+TGG 0.476115 2.4:+46864633 MS.gene057444:CDS
CTGAAATTGGCAGGGTTGCA+AGG 0.476585 2.4:+46863721 MS.gene057444:CDS
ATGGCTTCTTGTATATAAGC+AGG 0.478581 2.4:+46863464 MS.gene057444:CDS
TCATCGCTACCCTGAACTCT+TGG 0.480687 2.4:+46864924 MS.gene057444:CDS
CATGAGAGGACTGTGATGGC+AGG 0.482521 2.4:+46864721 MS.gene057444:CDS
AGCACCATGCCCAAATGGTT+GGG 0.487078 2.4:+46862788 None:intergenic
CCGGTTCCGGTACAATTAAG+TGG 0.490246 2.4:-46863080 None:intergenic
AGACTCAACAACACTATGTC+GGG 0.496446 2.4:+46862993 MS.gene057444:CDS
TTGGCAGAGTATATTTGAAT+GGG 0.503697 2.4:+46864882 MS.gene057444:CDS
GGGAGGTCGCAGCTTAGATT+GGG 0.507395 2.4:+46863863 MS.gene057444:CDS
CCCAACATGGAGAAAGCACT+TGG 0.508122 2.4:-46862829 None:intergenic
ATCATCCTTGCAGTGGTAAG+TGG 0.508626 2.4:+46863408 MS.gene057444:CDS
GAACAACGTGTGACATTCTA+GGG 0.509502 2.4:-46865053 None:intergenic
TAGTAATGTGCTGCTGGACG+AGG 0.511455 2.4:+46864639 MS.gene057444:CDS
ATGGAAAATCTTTACAAAAG+AGG 0.512490 2.4:+46863542 MS.gene057444:CDS
TCTTTACAAAAGAGGAACTA+AGG 0.513394 2.4:+46863550 MS.gene057444:CDS
ATGTTGGGAGGCCTCAATCA+TGG 0.517825 2.4:+46862844 MS.gene057444:CDS
TCTCTATGTATACTTGACTT+AGG 0.520787 2.4:+46863200 MS.gene057444:CDS
TCCATAAATAGTTGCTGGAT+TGG 0.523670 2.4:+46862963 MS.gene057444:CDS
TATAAGGATCCAAGAGTTCA+GGG 0.526939 2.4:-46864933 None:intergenic
ATAAATAGTTGCTGGATTGG+TGG 0.527869 2.4:+46862966 MS.gene057444:CDS
AATGTTCCACTTAATTGTAC+CGG 0.527889 2.4:+46863074 MS.gene057444:CDS
TCCAAACCTGGTGGTTGTGA+TGG 0.531323 2.4:+46863752 MS.gene057444:CDS
TGTGCAGCACCATGCCCAAA+TGG 0.532948 2.4:+46862783 None:intergenic
TCTGAGTCATTCCATGATTG+AGG 0.533121 2.4:-46862855 None:intergenic
CACTAACTATTTCGAGTAGT+AGG 0.534554 2.4:-46864825 None:intergenic
CAACCTTTGAGCCATCAGCT+TGG 0.538607 2.4:-46863647 None:intergenic
TGATGTAGCCATTTATCTAA+GGG 0.539000 2.4:-46863831 None:intergenic
CTGCTGCTACACTTCCATCA+TGG 0.540207 2.4:+46863523 MS.gene057444:CDS
AGACTGGTGGTACGTACAGT+GGG 0.541773 2.4:+46863622 MS.gene057444:CDS
ACTGTACGTACCACCAGTCT+TGG 0.542271 2.4:-46863619 None:intergenic
CTTGTTGGAGATGCCAAGAC+TGG 0.542340 2.4:+46863606 MS.gene057444:CDS
TTCTGGATAGTACTAGTCTC+TGG 0.544812 2.4:-46864982 None:intergenic
TAAGTGGAACATTAGCCAAA+GGG 0.545922 2.4:-46863064 None:intergenic
GTAATCATATGCACTGCCAT+AGG 0.545967 2.4:+46863376 MS.gene057444:CDS
TGGACAAGCCAACACCCATA+AGG 0.547153 2.4:-46864675 None:intergenic
GCAGCTTAGATTGGGCTATG+AGG 0.548458 2.4:+46863871 MS.gene057444:CDS
TCTAAGCTGCGACCTCCCCT+TGG 0.552914 2.4:-46863858 None:intergenic
CAGCACCATGCCCAAATGGT+TGG 0.556216 2.4:+46862787 None:intergenic
ACAGAATCAACTGCTTGTGC+TGG 0.557567 2.4:-46864856 None:intergenic
AAGCAGTTGATTCTGTGGGT+TGG 0.558849 2.4:+46864863 MS.gene057444:CDS
CATGATGGAAGTGTAGCAGC+AGG 0.561796 2.4:-46863522 None:intergenic
TAATCATATGCACTGCCATA+GGG 0.562277 2.4:+46863377 MS.gene057444:CDS
ATTGCAACGACGCTTGCTCA+AGG 0.562585 2.4:+46863900 MS.gene057444:CDS
TACAGTGGGGTCCAAGCTGA+TGG 0.563912 2.4:+46863636 MS.gene057444:CDS
GGATGATAAGGTATTCCCTA+TGG 0.566165 2.4:-46863392 None:intergenic
ACATTCTAGGGCGCATAGAA+GGG 0.566800 2.4:-46865041 None:intergenic
GTTCCTAAGACAGAATTGTC+CGG 0.569173 2.4:-46863099 None:intergenic
ATGATTGAGGCCTCCCAACA+TGG 0.578662 2.4:-46862842 None:intergenic
TCGTTTCGGTACACAAACTC+TGG 0.578686 2.4:-46864766 None:intergenic
AGCACAAGCAGTTGATTCTG+TGG 0.580618 2.4:+46864858 MS.gene057444:CDS
AAGACTCAACAACACTATGT+CGG 0.583057 2.4:+46862992 MS.gene057444:CDS
ATGGGATGCTGCTATGATCA+TGG 0.583332 2.4:+46863771 MS.gene057444:CDS
AGTGCTTTCTCCATGTTGGG+AGG 0.583986 2.4:+46862832 MS.gene057444:CDS
TAGCGATGAGCTTGAACAAG+AGG 0.587250 2.4:-46864910 None:intergenic
GGTCCAAGCTGATGGCTCAA+AGG 0.587629 2.4:+46863644 MS.gene057444:CDS
ATGAGAGGACTGTGATGGCA+GGG 0.589701 2.4:+46864722 MS.gene057444:CDS
ATATCTCGATGAACAACTTG+TGG 0.590367 2.4:-46864610 None:intergenic
CATATGAAGCGATGCATGAG+AGG 0.590509 2.4:+46864707 MS.gene057444:CDS
ACATGTTGTAATAAATATGG+TGG 0.592356 2.4:+46862879 MS.gene057444:CDS
CCAAACCTGGTGGTTGTGAT+GGG 0.594189 2.4:+46863753 MS.gene057444:CDS
TTAAGTGGAACATTAGCCAA+AGG 0.596276 2.4:-46863065 None:intergenic
TGAGAGGACTGTGATGGCAG+GGG 0.596780 2.4:+46864723 MS.gene057444:CDS
TAAGTCAAGTATACATAGAG+AGG 0.599321 2.4:-46863198 None:intergenic
GCACAAGCAGTTGATTCTGT+GGG 0.611876 2.4:+46864859 MS.gene057444:CDS
AAGGCTTCGACATCCAAACC+TGG 0.613833 2.4:+46863740 MS.gene057444:CDS
TGGCTTCTTGTATATAAGCA+GGG 0.613910 2.4:+46863465 MS.gene057444:CDS
AATGGCTACATCACATACCA+AGG 0.615578 2.4:+46863841 MS.gene057444:CDS
CAGTCTTGGCATCTCCAACA+AGG 0.616001 2.4:-46863605 None:intergenic
TGGTATGATACTAGTAGATG+AGG 0.621129 2.4:-46864962 None:intergenic
CATGTTGTAATAAATATGGT+GGG 0.621839 2.4:+46862880 MS.gene057444:CDS
GAGAGGACTGTGATGGCAGG+GGG 0.623889 2.4:+46864724 MS.gene057444:CDS
AAGACTGGTGGTACGTACAG+TGG 0.625096 2.4:+46863621 MS.gene057444:CDS
TCACTCCACTTACCACTGCA+AGG 0.631760 2.4:-46863413 None:intergenic
ATACCTTATCATCCTTGCAG+TGG 0.635282 2.4:+46863401 MS.gene057444:CDS
GTTCTATTCTGAAATTGGCA+GGG 0.635807 2.4:+46863713 MS.gene057444:CDS
ATGGCTACATCACATACCAA+GGG 0.641272 2.4:+46863842 MS.gene057444:CDS
ATAACCCAACCATTTGGGCA+TGG 0.642347 2.4:-46862792 None:intergenic
GACTAGTACTATCCAGAAGG+TGG 0.651449 2.4:+46864987 MS.gene057444:CDS
AGCATCCCATCACAACCACC+AGG 0.652225 2.4:-46863758 None:intergenic
AGAGACTAGTACTATCCAGA+AGG 0.665219 2.4:+46864984 MS.gene057444:CDS
CATGGTCTGATGATTCACAA+TGG 0.687957 2.4:+46863027 MS.gene057444:CDS
CAAACTCATAAACAATGTAG+CGG 0.691608 2.4:-46863797 None:intergenic
GATGCATGAGAGGACTGTGA+TGG 0.695690 2.4:+46864717 MS.gene057444:CDS
GTTGGAGATGCCAAGACTGG+TGG 0.695895 2.4:+46863609 MS.gene057444:CDS
GCTGCGTGCATGAATAGACA+AGG 0.705355 2.4:-46865014 None:intergenic
AGTATACATAGAGAGGCATG+AGG 0.707905 2.4:-46863191 None:intergenic
CTACATCACATACCAAGGGG+AGG 0.714671 2.4:+46863846 MS.gene057444:CDS
GCTTCGACATCCAAACCTGG+TGG 0.728669 2.4:+46863743 MS.gene057444:CDS
TGGCTACATCACATACCAAG+GGG 0.729491 2.4:+46863843 MS.gene057444:CDS
TCTTGGCATCTCCAACAAGG+CGG 0.740266 2.4:-46863602 None:intergenic
GACTGGTGGTACGTACAGTG+GGG 0.742017 2.4:+46863623 MS.gene057444:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTCTTTTTTTTTTTTTTTTT+TGG + chr2.4:46864448-46864467 MS.gene057444:intron 10.0%
!! AACATATTTATTACATAAGA+CGG - chr2.4:46864241-46864260 None:intergenic 15.0%
!! ATTTAATTCATTCTTTCAAA+AGG + chr2.4:46863301-46863320 MS.gene057444:intron 15.0%
!! TATGAGAGAATAATTCTAAA+TGG - chr2.4:46864167-46864186 None:intergenic 20.0%
!! TGATTTACTAACAAGAAAAA+AGG + chr2.4:46864487-46864506 MS.gene057444:intron 20.0%
!!! AAGAAATACTTTTGTTTGAA+GGG - chr2.4:46864405-46864424 None:intergenic 20.0%
!!! ACATTTTGTATCTGAAAAAA+TGG - chr2.4:46863358-46863377 None:intergenic 20.0%
!!! TAAGAAATACTTTTGTTTGA+AGG - chr2.4:46864406-46864425 None:intergenic 20.0%
! ACATGTTGTAATAAATATGG+TGG + chr2.4:46862879-46862898 MS.gene057444:CDS 25.0%
! ATGGAAAATCTTTACAAAAG+AGG + chr2.4:46863542-46863561 MS.gene057444:CDS 25.0%
! ATTACGAAAAATTTCAGTGA+AGG + chr2.4:46863576-46863595 MS.gene057444:CDS 25.0%
! CATGTTGTAATAAATATGGT+GGG + chr2.4:46862880-46862899 MS.gene057444:CDS 25.0%
! GAAAATCTTGAAAACATACA+AGG - chr2.4:46864296-46864315 None:intergenic 25.0%
! GAGACATGTTGTAATAAATA+TGG + chr2.4:46862876-46862895 MS.gene057444:CDS 25.0%
! GATGTGATTTATTAATCCAA+TGG - chr2.4:46864031-46864050 None:intergenic 25.0%
! TGCAGTTAAGAGATTAAAAA+GGG + chr2.4:46863668-46863687 MS.gene057444:CDS 25.0%
! TTAGTAAATCAAACTCGTAA+AGG - chr2.4:46864478-46864497 None:intergenic 25.0%
! TTGCAGTTAAGAGATTAAAA+AGG + chr2.4:46863667-46863686 MS.gene057444:CDS 25.0%
! TTTATGAGTTTGTAGCTAAT+GGG + chr2.4:46863808-46863827 MS.gene057444:CDS 25.0%
!! TTTGTAAAGATTTTCCATGA+TGG - chr2.4:46863540-46863559 None:intergenic 25.0%
AAATCAGAAAGTCTTAGCAT+TGG - chr2.4:46864068-46864087 None:intergenic 30.0%
AATGTAAAATGAGAATCCGT+GGG - chr2.4:46863245-46863264 None:intergenic 30.0%
AATGTTCCACTTAATTGTAC+CGG + chr2.4:46863074-46863093 MS.gene057444:CDS 30.0%
CAAACTCATAAACAATGTAG+CGG - chr2.4:46863800-46863819 None:intergenic 30.0%
GAAAAAAACAAACTTGCGTA+TGG - chr2.4:46864009-46864028 None:intergenic 30.0%
GCTAAGACTTTCTGATTTAA+CGG + chr2.4:46864070-46864089 MS.gene057444:intron 30.0%
GTAGATGAGGAAGATATATA+AGG - chr2.4:46864952-46864971 None:intergenic 30.0%
GTTTATGAGTTTGTAGCTAA+TGG + chr2.4:46863807-46863826 MS.gene057444:CDS 30.0%
TAAGTCAAGTATACATAGAG+AGG - chr2.4:46863201-46863220 None:intergenic 30.0%
TCTAAATGGACATGTAGAAA+GGG - chr2.4:46864153-46864172 None:intergenic 30.0%
TCTCTATGTATACTTGACTT+AGG + chr2.4:46863200-46863219 MS.gene057444:CDS 30.0%
TCTTTACAAAAGAGGAACTA+AGG + chr2.4:46863550-46863569 MS.gene057444:CDS 30.0%
TGATGTAGCCATTTATCTAA+GGG - chr2.4:46863834-46863853 None:intergenic 30.0%
TTCTAAATGGACATGTAGAA+AGG - chr2.4:46864154-46864173 None:intergenic 30.0%
TTGGCAGAGTATATTTGAAT+GGG + chr2.4:46864882-46864901 MS.gene057444:CDS 30.0%
! AAGAGTGACGTTTATAGTTT+TGG + chr2.4:46864799-46864818 MS.gene057444:CDS 30.0%
!! AAGGAGTTCTATTCTGAAAT+TGG + chr2.4:46863708-46863727 MS.gene057444:CDS 30.0%
!!! GCAAGTTTGTTTTTTTCCAT+TGG + chr2.4:46864012-46864031 MS.gene057444:intron 30.0%
AAACTTGATACCCATTTCCA+GGG + chr2.4:46864322-46864341 MS.gene057444:intron 35.0%
AACATTAGCCAAAGGGAATA+TGG - chr2.4:46863060-46863079 None:intergenic 35.0%
AAGACTCAACAACACTATGT+CGG + chr2.4:46862992-46863011 MS.gene057444:CDS 35.0%
AAGACTTTCTGATTTAACGG+TGG + chr2.4:46864073-46864092 MS.gene057444:intron 35.0%
ACCAATCCAGCAACTATTTA+TGG - chr2.4:46862967-46862986 None:intergenic 35.0%
ATATAAGGATCCAAGAGTTC+AGG - chr2.4:46864937-46864956 None:intergenic 35.0%
ATATCTCGATGAACAACTTG+TGG - chr2.4:46864613-46864632 None:intergenic 35.0%
ATGGCTTCTTGTATATAAGC+AGG + chr2.4:46863464-46863483 MS.gene057444:CDS 35.0%
CAACATTAGCAGTAGTTGTA+TGG + chr2.4:46863445-46863464 MS.gene057444:CDS 35.0%
CTACTACTCGAAATAGTTAG+TGG + chr2.4:46864826-46864845 MS.gene057444:CDS 35.0%
GAATAAGTCCATATTCCCTT+TGG + chr2.4:46863049-46863068 MS.gene057444:CDS 35.0%
GAATGTAAAATGAGAATCCG+TGG - chr2.4:46863246-46863265 None:intergenic 35.0%
GTGAATCCATAAATAGTTGC+TGG + chr2.4:46862958-46862977 MS.gene057444:CDS 35.0%
GTGATGTAGCCATTTATCTA+AGG - chr2.4:46863835-46863854 None:intergenic 35.0%
GTTGGCAGAGTATATTTGAA+TGG + chr2.4:46864881-46864900 MS.gene057444:CDS 35.0%
TAAGTGGAACATTAGCCAAA+GGG - chr2.4:46863067-46863086 None:intergenic 35.0%
TAATCATATGCACTGCCATA+GGG + chr2.4:46863377-46863396 MS.gene057444:CDS 35.0%
TATAAGGATCCAAGAGTTCA+GGG - chr2.4:46864936-46864955 None:intergenic 35.0%
TCCATAAATAGTTGCTGGAT+TGG + chr2.4:46862963-46862982 MS.gene057444:CDS 35.0%
TGAAACCCAACAAACATATG+TGG - chr2.4:46864350-46864369 None:intergenic 35.0%
TGGCTTCTTGTATATAAGCA+GGG + chr2.4:46863465-46863484 MS.gene057444:CDS 35.0%
TGGTATGATACTAGTAGATG+AGG - chr2.4:46864965-46864984 None:intergenic 35.0%
TGTTGGGTTTCACTTAGTTA+TGG + chr2.4:46864358-46864377 MS.gene057444:intron 35.0%
TTAAGTGGAACATTAGCCAA+AGG - chr2.4:46863068-46863087 None:intergenic 35.0%
! AGCCCATAGCATTTTAAACT+CGG + chr2.4:46864517-46864536 MS.gene057444:intron 35.0%
! ATAAATAGTTGCTGGATTGG+TGG + chr2.4:46862966-46862985 MS.gene057444:CDS 35.0%
! CACCGAGTTTAAAATGCTAT+GGG - chr2.4:46864522-46864541 None:intergenic 35.0%
! CACTAACTATTTCGAGTAGT+AGG - chr2.4:46864828-46864847 None:intergenic 35.0%
! GCTCTTGTTTATATTACCCA+CGG + chr2.4:46863226-46863245 MS.gene057444:intron 35.0%
! TCTTTGTTGTAAGCTCGTTT+CGG - chr2.4:46864783-46864802 None:intergenic 35.0%
!! AGAAAGCACTTGGTCTTATT+AGG - chr2.4:46862822-46862841 None:intergenic 35.0%
!! AGTTCTATTCTGAAATTGGC+AGG + chr2.4:46863712-46863731 MS.gene057444:CDS 35.0%
!! GAAAGCACTTGGTCTTATTA+GGG - chr2.4:46862821-46862840 None:intergenic 35.0%
!! GTTCTATTCTGAAATTGGCA+GGG + chr2.4:46863713-46863732 MS.gene057444:CDS 35.0%
!! TAAAAAGGGCAAGCTTTAAG+AGG + chr2.4:46863682-46863701 MS.gene057444:CDS 35.0%
!!! TTTTTTTCTCCCGTTTCAAC+AGG + chr2.4:46864566-46864585 MS.gene057444:intron 35.0%
AATGGCTACATCACATACCA+AGG + chr2.4:46863841-46863860 MS.gene057444:CDS 40.0%
AGACTCAACAACACTATGTC+GGG + chr2.4:46862993-46863012 MS.gene057444:CDS 40.0%
AGAGACTAGTACTATCCAGA+AGG + chr2.4:46864984-46865003 MS.gene057444:CDS 40.0%
ATACCTTATCATCCTTGCAG+TGG + chr2.4:46863401-46863420 MS.gene057444:CDS 40.0%
ATGCAGAAACCTGTTGAAAC+GGG - chr2.4:46864578-46864597 None:intergenic 40.0%
ATGGCTACATCACATACCAA+GGG + chr2.4:46863842-46863861 MS.gene057444:CDS 40.0%
CATGCAGAAACCTGTTGAAA+CGG - chr2.4:46864579-46864598 None:intergenic 40.0%
CATGGTCTGATGATTCACAA+TGG + chr2.4:46863027-46863046 MS.gene057444:CDS 40.0%
GAAACTTGATACCCATTTCC+AGG + chr2.4:46864321-46864340 MS.gene057444:intron 40.0%
GAACAACGTGTGACATTCTA+GGG - chr2.4:46865056-46865075 None:intergenic 40.0%
GTAATCATATGCACTGCCAT+AGG + chr2.4:46863376-46863395 MS.gene057444:CDS 40.0%
GTTCCTAAGACAGAATTGTC+CGG - chr2.4:46863102-46863121 None:intergenic 40.0%
TCTGAGTCATTCCATGATTG+AGG - chr2.4:46862858-46862877 None:intergenic 40.0%
TGAACAACGTGTGACATTCT+AGG - chr2.4:46865057-46865076 None:intergenic 40.0%
TGTAGAAAGGGCCAAATCTA+CGG - chr2.4:46864141-46864160 None:intergenic 40.0%
TTACCACTGCAAGGATGATA+AGG - chr2.4:46863407-46863426 None:intergenic 40.0%
! AGTATACATAGAGAGGCATG+AGG - chr2.4:46863194-46863213 None:intergenic 40.0%
! CATTTTGCTCAAAGTCTGTG+TGG + chr2.4:46862936-46862955 MS.gene057444:CDS 40.0%
! CCACCGAGTTTAAAATGCTA+TGG - chr2.4:46864523-46864542 None:intergenic 40.0%
! CCATAGCATTTTAAACTCGG+TGG + chr2.4:46864520-46864539 MS.gene057444:intron 40.0%
! CTAATGGGCCCTTAGATAAA+TGG + chr2.4:46863823-46863842 MS.gene057444:CDS 40.0%
! GGATGATAAGGTATTCCCTA+TGG - chr2.4:46863395-46863414 None:intergenic 40.0%
! TTCTGGATAGTACTAGTCTC+TGG - chr2.4:46864985-46865004 None:intergenic 40.0%
!! GGCAAGCTTTAAGAGGAAAA+AGG + chr2.4:46863689-46863708 MS.gene057444:CDS 40.0%
AACAAACATATGTGGTGCCC+TGG - chr2.4:46864342-46864361 None:intergenic 45.0%
AAGACAGAATTGTCCGGTTC+CGG - chr2.4:46863096-46863115 None:intergenic 45.0%
ACAGAATCAACTGCTTGTGC+TGG - chr2.4:46864859-46864878 None:intergenic 45.0%
ACCAAGTGCTTTCTCCATGT+TGG + chr2.4:46862828-46862847 MS.gene057444:CDS 45.0%
AGCATCATTCGCATCACTTC+AGG + chr2.4:46862908-46862927 MS.gene057444:CDS 45.0%
ATAACCCAACCATTTGGGCA+TGG - chr2.4:46862795-46862814 None:intergenic 45.0%
ATATGTGGTGCCCTGGAAAT+GGG - chr2.4:46864335-46864354 None:intergenic 45.0%
ATCATCCTTGCAGTGGTAAG+TGG + chr2.4:46863408-46863427 MS.gene057444:CDS 45.0%
ATGCCCAAATGGTTGGGTTA+TGG + chr2.4:46862794-46862813 MS.gene057444:CDS 45.0%
ATGGGATGCTGCTATGATCA+TGG + chr2.4:46863771-46863790 MS.gene057444:CDS 45.0%
CATATGAAGCGATGCATGAG+AGG + chr2.4:46864707-46864726 MS.gene057444:CDS 45.0%
CCAAATCTACGGTACACAAG+TGG - chr2.4:46864130-46864149 None:intergenic 45.0%
CCAAGTGCTTTCTCCATGTT+GGG + chr2.4:46862829-46862848 MS.gene057444:CDS 45.0%
CCACTTAATTGTACCGGAAC+CGG + chr2.4:46863080-46863099 MS.gene057444:CDS 45.0%
CCACTTGTGTACCGTAGATT+TGG + chr2.4:46864127-46864146 MS.gene057444:intron 45.0%
CGCTTCATATGGCACAAACT+TGG - chr2.4:46864698-46864717 None:intergenic 45.0%
CTCTCATGCATCGCTTCATA+TGG - chr2.4:46864709-46864728 None:intergenic 45.0%
GAACCGGACAATTCTGTCTT+AGG + chr2.4:46863096-46863115 MS.gene057444:CDS 45.0%
GACTAGTACTATCCAGAAGG+TGG + chr2.4:46864987-46865006 MS.gene057444:CDS 45.0%
GGGCACCACATATGTTTGTT+GGG + chr2.4:46864342-46864361 MS.gene057444:intron 45.0%
GGTCCATAACCCAACCATTT+GGG - chr2.4:46862800-46862819 None:intergenic 45.0%
TAGCGATGAGCTTGAACAAG+AGG - chr2.4:46864913-46864932 None:intergenic 45.0%
TCGTTTCGGTACACAAACTC+TGG - chr2.4:46864769-46864788 None:intergenic 45.0%
TGGCTACATCACATACCAAG+GGG + chr2.4:46863843-46863862 MS.gene057444:CDS 45.0%
! AAGCAGTTGATTCTGTGGGT+TGG + chr2.4:46864863-46864882 MS.gene057444:CDS 45.0%
! ACACTATGTCGGGTTTTCAG+TGG + chr2.4:46863003-46863022 MS.gene057444:CDS 45.0%
! AGCACAAGCAGTTGATTCTG+TGG + chr2.4:46864858-46864877 MS.gene057444:CDS 45.0%
! AGGGCACCACATATGTTTGT+TGG + chr2.4:46864341-46864360 MS.gene057444:intron 45.0%
! GAGTTTGGAGCACACCTTAT+GGG + chr2.4:46864661-46864680 MS.gene057444:CDS 45.0%
! GCACAAGCAGTTGATTCTGT+GGG + chr2.4:46864859-46864878 MS.gene057444:CDS 45.0%
!! ACATTCTAGGGCGCATAGAA+GGG - chr2.4:46865044-46865063 None:intergenic 45.0%
!!! ATCTTTTTTATTTTTATTTT+TGG + chr2.4:46863327-46863346 MS.gene057444:intron 5.0%
!!! TCTTTTTTATTTTTATTTTT+GGG + chr2.4:46863328-46863347 MS.gene057444:intron 5.0%
AAGACTGGTGGTACGTACAG+TGG + chr2.4:46863621-46863640 MS.gene057444:CDS 50.0%
AAGGCTTCGACATCCAAACC+TGG + chr2.4:46863740-46863759 MS.gene057444:CDS 50.0%
ACTGTACGTACCACCAGTCT+TGG - chr2.4:46863622-46863641 None:intergenic 50.0%
AGACAAGGTCAACCACCTTC+TGG - chr2.4:46865002-46865021 None:intergenic 50.0%
AGACTGGTGGTACGTACAGT+GGG + chr2.4:46863622-46863641 MS.gene057444:CDS 50.0%
AGTGAAGGAAACCGCCTTGT+TGG + chr2.4:46863591-46863610 MS.gene057444:CDS 50.0%
AGTGCTTTCTCCATGTTGGG+AGG + chr2.4:46862832-46862851 MS.gene057444:CDS 50.0%
ATGAGAGGACTGTGATGGCA+GGG + chr2.4:46864722-46864741 MS.gene057444:CDS 50.0%
ATGATTGAGGCCTCCCAACA+TGG - chr2.4:46862845-46862864 None:intergenic 50.0%
ATGTTGGGAGGCCTCAATCA+TGG + chr2.4:46862844-46862863 MS.gene057444:CDS 50.0%
ATTGCAACGACGCTTGCTCA+AGG + chr2.4:46863900-46863919 MS.gene057444:CDS 50.0%
CAACCTTTGAGCCATCAGCT+TGG - chr2.4:46863650-46863669 None:intergenic 50.0%
CAGTCTTGGCATCTCCAACA+AGG - chr2.4:46863608-46863627 None:intergenic 50.0%
CATATGTGGTGCCCTGGAAA+TGG - chr2.4:46864336-46864355 None:intergenic 50.0%
CCAAACCTGGTGGTTGTGAT+GGG + chr2.4:46863753-46863772 MS.gene057444:CDS 50.0%
CCGGTTCCGGTACAATTAAG+TGG - chr2.4:46863083-46863102 None:intergenic 50.0%
CTACATCACATACCAAGGGG+AGG + chr2.4:46863846-46863865 MS.gene057444:CDS 50.0%
CTGAAATTGGCAGGGTTGCA+AGG + chr2.4:46863721-46863740 MS.gene057444:CDS 50.0%
CTGCTGCTACACTTCCATCA+TGG + chr2.4:46863523-46863542 MS.gene057444:CDS 50.0%
CTTGTTGGAGATGCCAAGAC+TGG + chr2.4:46863606-46863625 MS.gene057444:CDS 50.0%
GATGCATGAGAGGACTGTGA+TGG + chr2.4:46864717-46864736 MS.gene057444:CDS 50.0%
GCAGCTTAGATTGGGCTATG+AGG + chr2.4:46863871-46863890 MS.gene057444:CDS 50.0%
GCTGCGTGCATGAATAGACA+AGG - chr2.4:46865017-46865036 None:intergenic 50.0%
GGGTCCATAACCCAACCATT+TGG - chr2.4:46862801-46862820 None:intergenic 50.0%
TCACTCCACTTACCACTGCA+AGG - chr2.4:46863416-46863435 None:intergenic 50.0%
TCATCGCTACCCTGAACTCT+TGG + chr2.4:46864924-46864943 MS.gene057444:CDS 50.0%
TCCAAACCTGGTGGTTGTGA+TGG + chr2.4:46863752-46863771 MS.gene057444:CDS 50.0%
TCGAGCTAGTAATGTGCTGC+TGG + chr2.4:46864633-46864652 MS.gene057444:CDS 50.0%
TCTTGGCATCTCCAACAAGG+CGG - chr2.4:46863605-46863624 None:intergenic 50.0%
TGGACAAGCCAACACCCATA+AGG - chr2.4:46864678-46864697 None:intergenic 50.0%
! CATGATGGAAGTGTAGCAGC+AGG - chr2.4:46863525-46863544 None:intergenic 50.0%
! GGAGTTTGGAGCACACCTTA+TGG + chr2.4:46864660-46864679 MS.gene057444:CDS 50.0%
! TAGTAATGTGCTGCTGGACG+AGG + chr2.4:46864639-46864658 MS.gene057444:CDS 50.0%
! TGTCGGGTTTTCAGTGGACA+TGG + chr2.4:46863009-46863028 MS.gene057444:CDS 50.0%
!! CCCAACATGGAGAAAGCACT+TGG - chr2.4:46862832-46862851 None:intergenic 50.0%
!! GACATTCTAGGGCGCATAGA+AGG - chr2.4:46865045-46865064 None:intergenic 50.0%
AGCATCCCATCACAACCACC+AGG - chr2.4:46863761-46863780 None:intergenic 55.0%
CATGAGAGGACTGTGATGGC+AGG + chr2.4:46864721-46864740 MS.gene057444:CDS 55.0%
CCCATCACAACCACCAGGTT+TGG - chr2.4:46863756-46863775 None:intergenic 55.0%
GACTGGTGGTACGTACAGTG+GGG + chr2.4:46863623-46863642 MS.gene057444:CDS 55.0%
GCTTCGACATCCAAACCTGG+TGG + chr2.4:46863743-46863762 MS.gene057444:CDS 55.0%
GGAGCACACCTTATGGGTGT+TGG + chr2.4:46864667-46864686 MS.gene057444:CDS 55.0%
GGGAGGTCGCAGCTTAGATT+GGG + chr2.4:46863863-46863882 MS.gene057444:CDS 55.0%
GGTCCAAGCTGATGGCTCAA+AGG + chr2.4:46863644-46863663 MS.gene057444:CDS 55.0%
GTGATGGCAGGGGGAACTTA+TGG + chr2.4:46864733-46864752 MS.gene057444:CDS 55.0%
GTTGGAGATGCCAAGACTGG+TGG + chr2.4:46863609-46863628 MS.gene057444:CDS 55.0%
TACAGTGGGGTCCAAGCTGA+TGG + chr2.4:46863636-46863655 MS.gene057444:CDS 55.0%
TGAGAGGACTGTGATGGCAG+GGG + chr2.4:46864723-46864742 MS.gene057444:CDS 55.0%
GAGAGGACTGTGATGGCAGG+GGG + chr2.4:46864724-46864743 MS.gene057444:CDS 60.0%
GGGGAGGTCGCAGCTTAGAT+TGG + chr2.4:46863862-46863881 MS.gene057444:CDS 60.0%
TCTAAGCTGCGACCTCCCCT+TGG - chr2.4:46863861-46863880 None:intergenic 60.0%
! GTGCTGCTGGACGAGGAGTT+TGG + chr2.4:46864646-46864665 MS.gene057444:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 46862790 46865113 46862790 ID=MS.gene057444
chr2.4 mRNA 46862790 46865113 46862790 ID=MS.gene057444.t1;Parent=MS.gene057444
chr2.4 exon 46862790 46863221 46862790 ID=MS.gene057444.t1.exon1;Parent=MS.gene057444.t1
chr2.4 CDS 46862790 46863221 46862790 ID=cds.MS.gene057444.t1;Parent=MS.gene057444.t1
chr2.4 exon 46863367 46863928 46863367 ID=MS.gene057444.t1.exon2;Parent=MS.gene057444.t1
chr2.4 CDS 46863367 46863928 46863367 ID=cds.MS.gene057444.t1;Parent=MS.gene057444.t1
chr2.4 exon 46864588 46865113 46864588 ID=MS.gene057444.t1.exon3;Parent=MS.gene057444.t1
chr2.4 CDS 46864588 46865113 46864588 ID=cds.MS.gene057444.t1;Parent=MS.gene057444.t1
Gene Sequence

>MS.gene057444

CACCATGCCCAAATGGTTGGGTTATGGACCCTAATAAGACCAAGTGCTTTCTCCATGTTGGGAGGCCTCAATCATGGAATGACTCAGAGACATGTTGTAATAAATATGGTGGGCATTTAGCATCATTCGCATCACTTCAGGAGTTACATTTTGCTCAAAGTCTGTGTGGTGAATCCATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACAACACTATGTCGGGTTTTCAGTGGACATGGTCTGATGATTCACAATGGAATAAGTCCATATTCCCTTTGGCTAATGTTCCACTTAATTGTACCGGAACCGGACAATTCTGTCTTAGGAACATCACAGAGTATTTATGTGCAGTAATGTCTAATAATTCAAAATCTCTCTTAAGTGAGAGATGTGATAATCCTCATGCCTCTCTATGTATACTTGACTTAGGTATGCTCTTGTTTATATTACCCACGGATTCTCATTTTACATTCATTAGAAATTCAGTATGTATATTTATCAATTATTTATTTAATTCATTCTTTCAAAAGGTTTATCTTTTTTATTTTTATTTTTGGGTGTGCCATTTTTTCAGATACAAAATGTAATCATATGCACTGCCATAGGGAATACCTTATCATCCTTGCAGTGGTAAGTGGAGTGATACTCTTGACAACATTAGCAGTAGTTGTATGGCTTCTTGTATATAAGCAGGGCAAGAAGAGAAGACGATCTAGAAAACTAACTGATCCTGCTGCTACACTTCCATCATGGAAAATCTTTACAAAAGAGGAACTAAGGTCAATTACGAAAAATTTCAGTGAAGGAAACCGCCTTGTTGGAGATGCCAAGACTGGTGGTACGTACAGTGGGGTCCAAGCTGATGGCTCAAAGGTTGCAGTTAAGAGATTAAAAAGGGCAAGCTTTAAGAGGAAAAAGGAGTTCTATTCTGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAACCTGGTGGTTGTGATGGGATGCTGCTATGATCATGGTGACCGCTACATTGTTTATGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGTCGCAGCTTAGATTGGGCTATGAGGATGAAAATTGCAACGACGCTTGCTCAAGGAATAGCGTAAGTTCAAAATATACTTATTCTTTGATAACTTTCTACAAGCTTTGTCTAATGTGCACAAGTAAATAAGTCTTGCACCATACGCAAGTTTGTTTTTTTCCATTGGATTAATAAATCACATCATATCACATTTGATCCAATGCTAAGACTTTCTGATTTAACGGTGGAAACAAGCTTGTGCATGATGCAAGACTTGTTCCACTTGTGTACCGTAGATTTGGCCCTTTCTACATGTCCATTTAGAATTATTCTCTCATAATTATACATGTTTTCACTCTATTAATAGAAGTATTCTTATGAAATCTAGCACCGTCTTATGTAATAAATATGTTGATAGCACATCTCTTATACAAATCTAGCACTGCCTTGTATGTTTTCAAGATTTTCATGAAGAAACTTGATACCCATTTCCAGGGCACCACATATGTTTGTTGGGTTTCACTTAGTTATGGATTATAGTTTCATGACTTCATCCCTTCAAACAAAAGTATTTCTTATAACTTGTTGAAATCTTTACGAGTCTTTTTTTTTTTTTTTTTTGGTCAACCTTTACGAGTTTGATTTACTAACAAGAAAAAAGGATTATATAGCCCATAGCATTTTAAACTCGGTGGATATATTAATCACAATTTGTTTATTTTTTTCTCCCGTTTCAACAGGTTTCTGCATGACAAAGTTAAGCCACAAGTTGTTCATCGAGATATTCGAGCTAGTAATGTGCTGCTGGACGAGGAGTTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCGATGCATGAGAGGACTGTGATGGCAGGGGGAACTTATGGATATCTTGCTCCAGAGTTTGTGTACCGAAACGAGCTTACAACAAAGAGTGACGTTTATAGTTTTGGTGTCCTACTACTCGAAATAGTTAGTGGACGTAGACCAGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCATCGCTACCCTGAACTCTTGGATCCTTATATATCTTCCTCATCTACTAGTATCATACCAGAGACTAGTACTATCCAGAAGGTGGTTGACCTTGTCTATTCATGCACGCAGCATGTCCCTTCTATGCGCCCTAGAATGTCACACGTTGTTCATCAGCTGCAACAGTTTACCCAGCCACCTTCAAAATAA

Protein sequence

>MS.gene057444.t1

HHAQMVGLWTLIRPSAFSMLGGLNHGMTQRHVVINMVGIUHHSHHFRSYILLKVCVVNPUIVAGLVEEDSTTLCRVFSGHGLMIHNGISPYSLWLMFHLIVPEPDNSVLGTSQSIYVQUCLIIQNLSUVRDVIILMPLYVYLTUIQNVIICTAIGNTLSSLQWUVEUYSUQHUQULYGFLYISRARREDDLENULILLLHFHHGKSLQKRNUGQLRKISVKETALLEMPRLVVRTVGSKLMAQRLQLRDUKGQALRGKRSSILKLAGLQGFDIQTWWLUWDAAMIMVTATLFMSLULMGPUINGYITYQGEVAAUIGLUGUKLQRRLLKEURFCMTKLSHKLFIEIFELVMCCWTRSLEHTLWVLACPSLCHMKRCMRGLUWQGELMDILLQSLCTETSLQQRVTFIVLVSYYSKULVDVDQHKQLILWVGRVYLNGLHLLFKLIATLNSWILIYLPHLLVSYQRLVLSRRWLTLSIHARSMSLLCALECHTLFISCNSLPSHLQN